Psyllid ID: psy6984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG
Secondary Structure (PSIPRED)
ccccccEEcEEEEEccccEEEEEEccccccEEEEccccccEEEEccccccccccEEcEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEcccccccEEEEEEccccEEEEEccccccccEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccEEEEEEEcccccccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEccccccccccEEEEEccccccEEEEEEccEccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEcc
Coil and Loop (DISEMBL)
mstetlqlrgtlnghngwvtqiatnpkfpdtilscsrdnTLIIWKLTrddtnygvpqkrlkghshfISDIvlssdgnyalsgswdktLRLWDLAAGKTTRRFEDHTKDVLSVAFsvdnrqivsssRDKTIKLWNTLAHCKFTivedghsdwvscvrfspnhqnpiivsaGWDRMVKVWNLTncklkinhsghtgylntvtvspdgslcasggkdmnamlwdlndgkhlhtLVHNDIITalcfspnrsfqkIKLDISRTlqksnlilypinhgkmetpffSLFRDVLSVAFsvdnrqivsssRDKTIKLWNTLAHCKFTIVDLETKKMVEElrpdvvsqstkadppmclslawstdgqtlfagysdntiRVWQVSVTSRGG
Flexible Loop (DISEMBL)
mstetlqlrgtlnghngwVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLsvafsvdnrqivsssrdktIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSvdnrqivsssrdktiKLWNTLAHCKFTIVDLETKKMVEELRPdvvsqstkadppMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG
Low Complexity Region (SEG)
MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG
Disordered region (IsUnstruct)
*********GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL*************PMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV*****
Disordered Region (DISOPRED)
MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS***
Disordered Region (DISEMBL)
MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG
Disordered Region (DISPRO)
****TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
O18640	318	Guanine nucleotide-bindin	yes	N/A	0.828	0.990	0.696	1e-140
O42248	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.609	1e-129
O42249	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.593	1e-124
P63245	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.590	1e-124
P63246	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.590	1e-124
P68040	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.590	1e-124
Q4R7Y4	317	Guanine nucleotide-bindin	N/A	N/A	0.831	0.996	0.590	1e-124
P63244	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.590	1e-124
P63247	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.590	1e-124
P63243	317	Guanine nucleotide-bindin	yes	N/A	0.831	0.996	0.590	1e-124

>sp|O18640|GBLP_DROME Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2

 Score =  499 bits (1286), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/376 (69%), Positives = 279/376 (74%), Gaps = 61/376 (16%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD-DTNYGVPQKRLK 61
           +ETLQLRGTL GHNGWVTQIATNPK PDTI+S SRD TLI+WKLTRD DTNYG PQKRL 
Sbjct: 2   SETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLY 61

Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
           GHSHFISD+VLSSDGNYALSGSWD+TLRLWDLAAGKTTRRFE HTKDVLSVAFS DNRQI
Sbjct: 62  GHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQI 121

Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT 181
           VS SRDKTIKLWNTLA CKFTI EDGH+DWVSCVRFSPNH NPIIVS GWDR VKVWNL 
Sbjct: 122 VSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLA 181

Query: 182 NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241
           NCKLK NH GH GYLNTVTVSPDGSLC SGGKD  A+LWDLNDGK+L+TL HNDII ALC
Sbjct: 182 NCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALC 241

Query: 242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS 301
                                                FS  R  L VA+           
Sbjct: 242 -------------------------------------FSPNRYWLCVAYG---------- 254

Query: 302 RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA 361
              +IK+W           DL  KK VEELRP+VVS ++KAD P CLSLAWSTDGQTLFA
Sbjct: 255 --PSIKIW-----------DLACKKTVEELRPEVVSPTSKADQPQCLSLAWSTDGQTLFA 301

Query: 362 GYSDNTIRVWQVSVTS 377
           GYSDNTIRVWQVSV++
Sbjct: 302 GYSDNTIRVWQVSVSA 317

Drosophila melanogaster (taxid: 7227)

>sp|O42248|GBLP_DANRE Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Danio rerio GN=gnb2l1 PE=2 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/376 (60%), Positives = 267/376 (71%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + +RGTL GH+GWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTVRGTLKGHSGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSADNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+TI +D H++WVSCVRFSPN  NPIIVS GWD+MVKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTIQDDSHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   D I ALCF
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDTINALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+ELR D+++ ++KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELRQDIITTNSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN IRVWQV++ +R
Sbjct: 302 YTDNLIRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes (By similarity). Required for VANGL2 membrane localization, inhibits Wnt signaling and regulates cellular polarization and oriented cell division during gastrulation.

Danio rerio (taxid: 7955)

>sp|O42249|GBLP_ORENI Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Oreochromis niloticus GN=gnb2l1 PE=2 SV=1

 Score =  446 bits (1147), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/376 (59%), Positives = 265/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + +RGTL GH+GWVTQIAT PK+PD ILS SRD ++I+WKLTRD+TNYG+PQ+ LKG
Sbjct: 2   TEQMTVRGTLKGHSGWVTQIATTPKYPDMILSASRDKSIIMWKLTRDETNYGIPQRSLKG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSG+WD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGAWDGTLRLWDLTTGLTTRRFVGHTKDVLSVAFSADNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+TI ++GH++WVSCVRFSPN  NPIIVS GWD+MVKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTIQDEGHTEWVSCVRFSPNSSNPIIVSCGWDKMVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           DV++      NR  + ++ 
Sbjct: 228 ------------------------YTLDSG-----------DVINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+ELR +V+S ++KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELRQEVISTNSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN IRVWQV++ +R
Sbjct: 302 YTDNLIRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Required for VANGL2 membrane localization, inhibits Wnt signaling and regulates cellular polarization and oriented cell division during gastrulation.

Oreochromis niloticus (taxid: 8128)

>sp|P63245|GBLP_RAT Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Component of the 40S ribosomal subunit involved in translational repression. Binds to and stabilizes activated protein kinase C (PKC), increasing PKC-mediated phosphorylation. May recruit activated PKC to the ribosome, leading to phosphorylation of EIF6. Inhibits the activity of SRC kinases including SRC, LCK and YES1. Inhibits cell growth by prolonging the G0/G1 phase of the cell cycle. Enhances phosphorylation of BMAL1 by PRKCA and inhibits transcriptional activity of the BMAL1-CLOCK heterodimer. Facilitates ligand-independent nuclear translocation of AR following PKC activation, represses AR transactivation activity and is required for phosphorylation of AR by SRC. Modulates IGF1R-dependent integrin signaling and promotes cell spreading and contact with the extracellular matrix. Involved in PKC-dependent translocation of ADAM12 to the cell membrane. Promotes the ubiquitination and proteasome-mediated degradation of proteins such as CLEC1B and HIF1A. Required for VANGL2 membrane localization, inhibits Wnt signaling, and regulates cellular polarization and oriented cell division during gastrulation. Required for PTK2/FAK1 phosphorylation and dephosphorylation. Regulates internalization of the muscarinic receptor CHRM2. Promotes apoptosis by increasing oligomerization of BAX and disrupting the interaction of BAX with the anti-apoptotic factor BCL2L. Inhibits TRPM6 channel activity. Regulates cell surface expression of some GPCRs such as TBXA2R. Plays a role in regulation of FLT1-mediated cell migration.

Rattus norvegicus (taxid: 10116)

>sp|P63246|GBLP_PIG Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Component of the 40S ribosomal subunit involved in translational repression. Binds to and stabilizes activated protein kinase C (PKC), increasing PKC-mediated phosphorylation. May recruit activated PKC to the ribosome, leading to phosphorylation of EIF6. Inhibits the activity of SRC kinases including SRC, LCK and YES1. Inhibits cell growth by prolonging the G0/G1 phase of the cell cycle. Enhances phosphorylation of BMAL1 by PRKCA and inhibits transcriptional activity of the BMAL1-CLOCK heterodimer. Facilitates ligand-independent nuclear translocation of AR following PKC activation, represses AR transactivation activity and is required for phosphorylation of AR by SRC. Modulates IGF1R-dependent integrin signaling and promotes cell spreading and contact with the extracellular matrix. Involved in PKC-dependent translocation of ADAM12 to the cell membrane. Promotes the ubiquitination and proteasome-mediated degradation of proteins such as CLEC1B and HIF1A. Required for VANGL2 membrane localization, inhibits Wnt signaling, and regulates cellular polarization and oriented cell division during gastrulation. Required for PTK2/FAK1 phosphorylation and dephosphorylation. Regulates internalization of the muscarinic receptor CHRM2. Promotes apoptosis by increasing oligomerization of BAX and disrupting the interaction of BAX with the anti-apoptotic factor BCL2L. Inhibits TRPM6 channel activity. Regulates cell surface expression of some GPCRs such as TBXA2R. Plays a role in regulation of FLT1-mediated cell migration.

Sus scrofa (taxid: 9823)

>sp|P68040|GBLP_MOUSE Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Mus musculus GN=Gnb2l1 PE=1 SV=3

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Component of the 40S ribosomal subunit involved in translational repression. Binds to and stabilizes activated protein kinase C (PKC), increasing PKC-mediated phosphorylation. May recruit activated PKC to the ribosome, leading to phosphorylation of EIF6. Inhibits the activity of SRC kinases including SRC, LCK and YES1. Inhibits cell growth by prolonging the G0/G1 phase of the cell cycle. Enhances phosphorylation of BMAL1 by PRKCA and inhibits transcriptional activity of the BMAL1-CLOCK heterodimer. Facilitates ligand-independent nuclear translocation of AR following PKC activation, represses AR transactivation activity and is required for phosphorylation of AR by SRC. Modulates IGF1R-dependent integrin signaling and promotes cell spreading and contact with the extracellular matrix. Involved in PKC-dependent translocation of ADAM12 to the cell membrane. Promotes the ubiquitination and proteasome-mediated degradation of proteins such as CLEC1B and HIF1A. Required for VANGL2 membrane localization, inhibits Wnt signaling, and regulates cellular polarization and oriented cell division during gastrulation. Required for PTK2/FAK1 phosphorylation and dephosphorylation. Regulates internalization of the muscarinic receptor CHRM2. Promotes apoptosis by increasing oligomerization of BAX and disrupting the interaction of BAX with the anti-apoptotic factor BCL2L. Inhibits TRPM6 channel activity. Regulates cell surface expression of some GPCRs such as TBXA2R. Plays a role in regulation of FLT1-mediated cell migration.

Mus musculus (taxid: 10090)

>sp|Q4R7Y4|GBLP_MACFA Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Component of the 40S ribosomal subunit involved in translational repression. Binds to and stabilizes activated protein kinase C (PKC), increasing PKC-mediated phosphorylation. May recruit activated PKC to the ribosome, leading to phosphorylation of EIF6. Inhibits the activity of SRC kinases including SRC, LCK and YES1. Inhibits cell growth by prolonging the G0/G1 phase of the cell cycle. Enhances phosphorylation of BMAL1 by PRKCA and inhibits transcriptional activity of the BMAL1-CLOCK heterodimer. Facilitates ligand-independent nuclear translocation of AR following PKC activation, represses AR transactivation activity and is required for phosphorylation of AR by SRC. Modulates IGF1R-dependent integrin signaling and promotes cell spreading and contact with the extracellular matrix. Involved in PKC-dependent translocation of ADAM12 to the cell membrane. Promotes the ubiquitination and proteasome-mediated degradation of proteins such as CLEC1B and HIF1A. Required for VANGL2 membrane localization, inhibits Wnt signaling, and regulates cellular polarization and oriented cell division during gastrulation. Required for PTK2/FAK1 phosphorylation and dephosphorylation. Regulates internalization of the muscarinic receptor CHRM2. Promotes apoptosis by increasing oligomerization of BAX and disrupting the interaction of BAX with the anti-apoptotic factor BCL2L. Inhibits TRPM6 channel activity. Regulates cell surface expression of some GPCRs such as TBXA2R. Plays a role in regulation of FLT1-mediated cell migration.

Macaca fascicularis (taxid: 9541)

>sp|P63244|GBLP_HUMAN Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Homo sapiens GN=GNB2L1 PE=1 SV=3

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Component of the 40S ribosomal subunit involved in translational repression. Binds to and stabilizes activated protein kinase C (PKC), increasing PKC-mediated phosphorylation. May recruit activated PKC to the ribosome, leading to phosphorylation of EIF6. Inhibits the activity of SRC kinases including SRC, LCK and YES1. Inhibits cell growth by prolonging the G0/G1 phase of the cell cycle. Enhances phosphorylation of BMAL1 by PRKCA and inhibits transcriptional activity of the BMAL1-CLOCK heterodimer. Facilitates ligand-independent nuclear translocation of AR following PKC activation, represses AR transactivation activity and is required for phosphorylation of AR by SRC. Modulates IGF1R-dependent integrin signaling and promotes cell spreading and contact with the extracellular matrix. Involved in PKC-dependent translocation of ADAM12 to the cell membrane. Promotes the ubiquitination and proteasome-mediated degradation of proteins such as CLEC1B and HIF1A. Required for VANGL2 membrane localization, inhibits Wnt signaling, and regulates cellular polarization and oriented cell division during gastrulation. Required for PTK2/FAK1 phosphorylation and dephosphorylation. Regulates internalization of the muscarinic receptor CHRM2. Promotes apoptosis by increasing oligomerization of BAX and disrupting the interaction of BAX with the anti-apoptotic factor BCL2L. Inhibits TRPM6 channel activity. Regulates cell surface expression of some GPCRs such as TBXA2R. Plays a role in regulation of FLT1-mediated cell migration. Binds to Y.pseudotuberculosis yopK which leads to inhibition of phagocytosis and survival of bacteria following infection of host cells. Enhances phosphorylation of HIV-1 Nef by PKCs. Promotes migration of breast carcinoma cells by binding to and activating RHOA.

Homo sapiens (taxid: 9606)

>sp|P63247|GBLP_CHICK Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Gallus gallus GN=GNB2L1 PE=2 SV=1

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes.

Gallus gallus (taxid: 9031)

>sp|P63243|GBLP_BOVIN Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Bos taurus GN=GNB2L1 PE=2 SV=3

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

Involved in the recruitment, assembly and/or regulation of a variety of signaling molecules. Interacts with a wide variety of proteins and plays a role in many cellular processes. Component of the 40S ribosomal subunit involved in translational repression. Binds to and stabilizes activated protein kinase C (PKC), increasing PKC-mediated phosphorylation. May recruit activated PKC to the ribosome, leading to phosphorylation of EIF6. Inhibits the activity of SRC kinases including SRC, LCK and YES1. Inhibits cell growth by prolonging the G0/G1 phase of the cell cycle. Enhances phosphorylation of BMAL1 by PRKCA and inhibits transcriptional activity of the BMAL1-CLOCK heterodimer. Facilitates ligand-independent nuclear translocation of AR following PKC activation, represses AR transactivation activity and is required for phosphorylation of AR by SRC. Modulates IGF1R-dependent integrin signaling and promotes cell spreading and contact with the extracellular matrix. Involved in PKC-dependent translocation of ADAM12 to the cell membrane. Promotes the ubiquitination and proteasome-mediated degradation of proteins such as CLEC1B and HIF1A. Required for VANGL2 membrane localization, inhibits Wnt signaling, and regulates cellular polarization and oriented cell division during gastrulation. Required for PTK2/FAK1 phosphorylation and dephosphorylation. Regulates internalization of the muscarinic receptor CHRM2. Promotes apoptosis by increasing oligomerization of BAX and disrupting the interaction of BAX with the anti-apoptotic factor BCL2L. Inhibits TRPM6 channel activity. Regulates cell surface expression of some GPCRs such as TBXA2R. Plays a role in regulation of FLT1-mediated cell migration.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
114319093	317	receptor for activated protein kinase C-	0.831	0.996	0.723	1e-151
327387363	317	guanine nucleotide-binding protein subun	0.831	0.996	0.723	1e-151
307189949	317	Guanine nucleotide-binding protein subun	0.831	0.996	0.723	1e-151
156548258	317	PREDICTED: guanine nucleotide-binding pr	0.831	0.996	0.723	1e-151
383852414	317	PREDICTED: guanine nucleotide-binding pr	0.828	0.993	0.722	1e-150
340712505	317	PREDICTED: guanine nucleotide-binding pr	0.831	0.996	0.720	1e-150
48104663	317	PREDICTED: receptor of activated protein	0.831	0.996	0.720	1e-150
91089633	318	PREDICTED: similar to receptor for activ	0.828	0.990	0.720	1e-149
308512771	320	receptor for activated protein kinase C	0.831	0.987	0.714	1e-149
322799004	320	hypothetical protein SINV_09390 [Solenop	0.831	0.987	0.715	1e-149

>gi|114319093|gb|ABI63548.1| receptor for activated protein kinase C-like [Blattella germanica]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/376 (72%), Positives = 294/376 (78%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           +ETLQLRGTL GHNGWVTQIATNPK+PD ILSCSRD TLI+WKLTRD+TNYGVPQKRL G
Sbjct: 2   SETLQLRGTLRGHNGWVTQIATNPKYPDMILSCSRDKTLIVWKLTRDETNYGVPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+VLSSDGNYALSGSWDKTLRLWDLAAG+TTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHFVSDVVLSSDGNYALSGSWDKTLRLWDLAAGRTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI +DGHSDWVSCVRFSPNH NPIIVSAGWD++VKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPNHSNPIIVSAGWDKVVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLKINH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CKLKINHIGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAF 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE+K MVEELRP+VVSQ++KA+PP CLSLAWSTDGQTLFAG
Sbjct: 253 GPSIKIW-----------DLESKDMVEELRPEVVSQTSKAEPPQCLSLAWSTDGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           Y DNTIRVWQVSV +R
Sbjct: 302 YFDNTIRVWQVSVFAR 317

Source: Blattella germanica

Species: Blattella germanica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327387363|gb|AEA72283.1| guanine nucleotide-binding protein subunit beta-like protein [Solenopsis invicta]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/376 (72%), Positives = 295/376 (78%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TETLQLRGTL GHNGWVTQIATNPK+PD ILS SRD TLI+WKLTRD+ NYG+PQKRL G
Sbjct: 2   TETLQLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEANYGIPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHFISD+VLSSDGNYALSGSWDKTLRLWDLAAG+TTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGRTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI +DGH+DWVSCVRFSPNH NPIIVSAGWDR+VKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQDDGHTDWVSCVRFSPNHANPIIVSAGWDRVVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           C+LKINHSGHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CRLKINHSGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAF 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
              IK+W           DLETK+MVEEL+P+VVS ++KA+PP+CLSLAWSTDGQTLFAG
Sbjct: 253 GPWIKIW-----------DLETKEMVEELKPEVVSATSKAEPPLCLSLAWSTDGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           YSDNTIRVWQVSV+SR
Sbjct: 302 YSDNTIRVWQVSVSSR 317

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189949|gb|EFN74185.1| Guanine nucleotide-binding protein subunit beta-like protein [Camponotus floridanus]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/376 (72%), Positives = 294/376 (78%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TETLQLRGTL GHNGWVTQIATNPK+PD ILS SRD TLI+WKLTRD+ NYG+PQKRL G
Sbjct: 2   TETLQLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEANYGIPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHFISD+VLSSDGNYALSGSWDKTLRLWDLA G+TTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAVGRTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI +DGH+DWVSCVRFSPNH NPIIVSAGWDR+VKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQDDGHTDWVSCVRFSPNHANPIIVSAGWDRIVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           C+LKINHSGHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CRLKINHSGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAF 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
              IK+W           DLETK+MVEEL+P+VVS ++KA+PP+CLSLAWSTDGQTLFAG
Sbjct: 253 GPWIKIW-----------DLETKEMVEELKPEVVSATSKAEPPLCLSLAWSTDGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           YSDNTIRVWQVSVTSR
Sbjct: 302 YSDNTIRVWQVSVTSR 317

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548258|ref|XP_001600152.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Nasonia vitripennis]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/376 (72%), Positives = 293/376 (77%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TETLQLRGTL GHNGWVTQIATNPK+PD ILS SRD TLI+WKLTRD+ NYGVPQKRL G
Sbjct: 2   TETLQLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEANYGVPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHFISD+VLSSDGNYALSGSWDKTLRLWDLAAG+TTRRFEDHT+DVLSVAFSVDNRQIV
Sbjct: 62  HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGRTTRRFEDHTQDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI EDGHSDWVSCVRFSPNH NPIIVSAGWDR+VKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQEDGHSDWVSCVRFSPNHSNPIIVSAGWDRVVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           C+LKINH+GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CRLKINHNGHTGYLNTVTVSPDGSLCASGGKDNKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAY 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
              IK+W           DLE K+MVEEL+PDVVS ++KA+PP CLSLAWSTDGQTLFAG
Sbjct: 253 GPWIKIW-----------DLEGKEMVEELKPDVVSTTSKAEPPQCLSLAWSTDGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           YSDNTIRVWQVS++SR
Sbjct: 302 YSDNTIRVWQVSISSR 317

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852414|ref|XP_003701723.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Megachile rotundata]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/375 (72%), Positives = 293/375 (78%), Gaps = 60/375 (16%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TETLQLRGTL GHNGWVTQIATNPK+PD ILS SRD TLI+WKLTRD+ NYG+PQKRL G
Sbjct: 2   TETLQLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEANYGIPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSH+ISD+VLSSDGNYALSGSWDKTLRLWDLAAG+TTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHYISDVVLSSDGNYALSGSWDKTLRLWDLAAGRTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI EDGH+DWVSCVRFSPNH NPIIVSAGWD++VKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQEDGHTDWVSCVRFSPNHSNPIIVSAGWDKLVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLKINHSGHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAF 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
              IK+W           DLETK+MVEEL+P+VVS ++KA+PP CLSLAWSTDGQTLFAG
Sbjct: 253 GPWIKIW-----------DLETKEMVEELKPEVVSATSKAEPPHCLSLAWSTDGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTS 377
           YSDNTIRVWQVSV+S
Sbjct: 302 YSDNTIRVWQVSVSS 316

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712505|ref|XP_003394799.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Bombus terrestris] gi|350399843|ref|XP_003485657.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Bombus impatiens]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/376 (72%), Positives = 294/376 (78%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TETLQLRGTL GHNGWVTQIATNPK+PD ILS SRD TLI+WKLTRD+ NYG+PQKRL G
Sbjct: 2   TETLQLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEANYGIPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHFISD+VLSSDGNYALSGSWDKTLRLWDLAAG+TTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGRTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI +DGH+DWVSCVRFSPNH NPIIVSAGWD++VKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQDDGHTDWVSCVRFSPNHSNPIIVSAGWDKLVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           C+LKINHSGHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CRLKINHSGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAF 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
              IK+W           DLETK+MVEEL+P+VVS ++KA+PP CLSLAWSTDGQTLFAG
Sbjct: 253 GPWIKIW-----------DLETKEMVEELKPEVVSATSKAEPPHCLSLAWSTDGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           YSDNTIRVWQVSV+SR
Sbjct: 302 YSDNTIRVWQVSVSSR 317

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48104663|ref|XP_392962.1| PREDICTED: receptor of activated protein kinase C 1 isoform 1 [Apis mellifera] gi|380016950|ref|XP_003692430.1| PREDICTED: guanine nucleotide-binding protein subunit beta-like protein-like [Apis florea]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/376 (72%), Positives = 293/376 (77%), Gaps = 60/376 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TETLQLRGTL GHNGWVTQIATNPK+PD ILS SRD TLI+WKLTRD+ NYG+PQKRL G
Sbjct: 2   TETLQLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEANYGIPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHFISD+VLSSDGNYALSGSWDKTLRLWDLAAG+TTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGRTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI +DGH+DWVSCVRFSPNH NPIIVSAGWD++VKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQDDGHTDWVSCVRFSPNHSNPIIVSAGWDKLVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           C+LKINH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CRLKINHCGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAF 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
              IK+W           DLETK+MVEEL+P+VVS ++KA+PP CLSLAWSTDGQTLFAG
Sbjct: 253 GPWIKIW-----------DLETKEMVEELKPEVVSATSKAEPPHCLSLAWSTDGQTLFAG 301

Query: 363 YSDNTIRVWQVSVTSR 378
           YSDNTIRVWQVSVTSR
Sbjct: 302 YSDNTIRVWQVSVTSR 317

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089633|ref|XP_973579.1| PREDICTED: similar to receptor for activated protein kinase C-like [Tribolium castaneum] gi|270012613|gb|EFA09061.1| hypothetical protein TcasGA2_TC006776 [Tribolium castaneum]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 271/376 (72%), Positives = 294/376 (78%), Gaps = 61/376 (16%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           +ETLQL+GTL GHNGW+TQIATNPK+PD ILS SRD TLI+WKLTRD+T YGVPQKRL G
Sbjct: 2   SETLQLKGTLLGHNGWITQIATNPKYPDLILSASRDKTLIVWKLTRDETCYGVPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHFISD+VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI +DGHSDWVSCVRFSPNH NPIIVSAGWDRMVKVWNLTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPNHSNPIIVSAGWDRMVKVWNLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           C+LKINHSGHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CRLKINHSGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAF 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQS-TKADPPMCLSLAWSTDGQTLFA 361
             +IK+W           DLE+K+MVEELRP+VVSQ  +KA+PP CLSLAWSTDGQTLFA
Sbjct: 253 GPSIKIW-----------DLESKEMVEELRPEVVSQPLSKAEPPQCLSLAWSTDGQTLFA 301

Query: 362 GYSDNTIRVWQVSVTS 377
           GYSDNTIRVWQVS+++
Sbjct: 302 GYSDNTIRVWQVSISA 317

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308512771|gb|ADO33039.1| receptor for activated protein kinase C RACK isoform 1 [Biston betularia]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/378 (71%), Positives = 294/378 (77%), Gaps = 62/378 (16%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TETL+LRGTL GHNGWVTQIATNPK+PD ILS SRD TLI+WKLTRD+TNYGVPQKRL G
Sbjct: 2   TETLKLRGTLCGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGVPQKRLYG 61

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHFISD+VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV
Sbjct: 62  HSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 121

Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTLA CK+TI +DGHSDWVSCVRFSPNH NPIIVSAGWDR VKVW+LTN
Sbjct: 122 SGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPNHANPIIVSAGWDRTVKVWHLTN 181

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLKINH GH+GYLNTVTVSPDGSLCASGGKDM AMLWDLNDGKHLHTL HNDIITALCF
Sbjct: 182 CKLKINHLGHSGYLNTVTVSPDGSLCASGGKDMKAMLWDLNDGKHLHTLDHNDIITALCF 241

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           SP                                                 NR  + ++ 
Sbjct: 242 SP-------------------------------------------------NRYWLCAAY 252

Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ--STKADPPMCLSLAWSTDGQTLF 360
             +IK+W           DLE+K+MVEEL+P++++Q  S K+DPP CLSLAWSTDGQTLF
Sbjct: 253 GPSIKIW-----------DLESKEMVEELKPEIINQNQSQKSDPPQCLSLAWSTDGQTLF 301

Query: 361 AGYSDNTIRVWQVSVTSR 378
           AGYSDN IRVWQVSV++R
Sbjct: 302 AGYSDNIIRVWQVSVSAR 319

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799004|gb|EFZ20464.1| hypothetical protein SINV_09390 [Solenopsis invicta]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 271/379 (71%), Positives = 294/379 (77%), Gaps = 63/379 (16%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDN---TLIIWKLTRDDTNYGVPQKR 59
           TETLQLRGTL GHNGWVTQIATNPK+PD ILS SR     TLI+WKLTRD+ NYG+PQKR
Sbjct: 2   TETLQLRGTLRGHNGWVTQIATNPKYPDMILSSSRGKYHKTLIVWKLTRDEANYGIPQKR 61

Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GHSHFISD+VLSSDGNYALSGSWDKTLRLWDLAAG+TTRRFEDHTKDVLSVAFSVDNR
Sbjct: 62  LYGHSHFISDVVLSSDGNYALSGSWDKTLRLWDLAAGRTTRRFEDHTKDVLSVAFSVDNR 121

Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
           QIVS SRDKTIKLWNTLA CK+TI +DGH+DWVSCVRFSPNH NPIIVSAGWDR+VKVWN
Sbjct: 122 QIVSGSRDKTIKLWNTLAECKYTIQDDGHTDWVSCVRFSPNHANPIIVSAGWDRVVKVWN 181

Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
           LTNC+LKINHSGHTGYLNTVTVSPDGSLCASGGKD  AMLWDLNDGKHLHTL HNDIITA
Sbjct: 182 LTNCRLKINHSGHTGYLNTVTVSPDGSLCASGGKDCKAMLWDLNDGKHLHTLDHNDIITA 241

Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
           LCFSP                                                 NR  + 
Sbjct: 242 LCFSP-------------------------------------------------NRYWLC 252

Query: 300 SSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTL 359
           ++    IK+W           DLETK+MVEEL+P+VVS ++KA+PP+CLSLAWSTDGQTL
Sbjct: 253 AAFGPWIKIW-----------DLETKEMVEELKPEVVSATSKAEPPLCLSLAWSTDGQTL 301

Query: 360 FAGYSDNTIRVWQVSVTSR 378
           FAGYSDNTIRVWQVSV+SR
Sbjct: 302 FAGYSDNTIRVWQVSVSSR 320

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
FB|FBgn0020618	318	Rack1 "Receptor of activated p	0.786	0.940	0.716	9.8e-119
WB|WBGene00010556	325	rack-1 [Caenorhabditis elegans	0.647	0.756	0.669	1.9e-110
UNIPROTKB|Q21215	325	rack-1 "Guanine nucleotide-bin	0.647	0.756	0.669	1.9e-110
UNIPROTKB|G8JL27	320	GNB2L1 "Guanine nucleotide-bin	0.807	0.959	0.644	1.9e-108
UNIPROTKB|P63247	317	GNB2L1 "Guanine nucleotide-bin	0.807	0.968	0.644	1.9e-108
UNIPROTKB|P63243	317	GNB2L1 "Guanine nucleotide-bin	0.807	0.968	0.644	1.9e-108
UNIPROTKB|F1PLR0	317	GNB2L1 "Uncharacterized protei	0.807	0.968	0.644	1.9e-108
UNIPROTKB|P63244	317	GNB2L1 "Guanine nucleotide-bin	0.807	0.968	0.644	1.9e-108
UNIPROTKB|P63246	317	GNB2L1 "Guanine nucleotide-bin	0.807	0.968	0.644	1.9e-108
UNIPROTKB|B1N1C2	317	GNB2L1 "Uncharacterized protei	0.807	0.968	0.644	1.9e-108

FB|FBgn0020618 Rack1 "Receptor of activated protein kinase C 1" [Drosophila melanogaster (taxid:7227)]

 Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
 Identities = 228/318 (71%), Positives = 256/318 (80%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD-DTNYGVPQKRLK 61
             +ETLQLRGTL GHNGWVTQIATNPK PDTI+S SRD TLI+WKLTRD DTNYG PQKRL 
Sbjct:     2 SETLQLRGTLIGHNGWVTQIATNPKDPDTIISASRDKTLIVWKLTRDEDTNYGYPQKRLY 61

Query:    62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
             GHSHFISD+VLSSDGNYALSGSWD+TLRLWDLAAGKTTRRFE HTKDVLSVAFS DNRQI
Sbjct:    62 GHSHFISDVVLSSDGNYALSGSWDQTLRLWDLAAGKTTRRFEGHTKDVLSVAFSADNRQI 121

Query:   122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT 181
             VS SRDKTIKLWNTLA CKFTI EDGH+DWVSCVRFSPNH NPIIVS GWDR VKVWNL 
Sbjct:   122 VSGSRDKTIKLWNTLAECKFTIQEDGHTDWVSCVRFSPNHSNPIIVSCGWDRTVKVWNLA 181

Query:   182 NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241
             NCKLK NH GH GYLNTVTVSPDGSLC SGGKD  A+LWDLNDGK+L+TL HNDII ALC
Sbjct:   182 NCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHNDIINALC 241

Query:   242 FSPNRSF------QKIKL-DIS--RTLQKSNL-ILYPINHGKMETPFFSLFRDVLSVAFS 291
             FSPNR +        IK+ D++  +T+++    ++ P +  K + P        LS+A+S
Sbjct:   242 FSPNRYWLCVAYGPSIKIWDLACKKTVEELRPEVVSPTS--KADQP------QCLSLAWS 293

Query:   292 VDNRQIVSSSRDKTIKLW 309
              D + + +   D TI++W
Sbjct:   294 TDGQTLFAGYSDNTIRVW 311

GO:0005080 "protein kinase C binding" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IGI

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0016243 "regulation of autophagic vacuole size" evidence=IMP

WB|WBGene00010556 rack-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 910 (325.4 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
 Identities = 168/251 (66%), Positives = 202/251 (80%)

Query:     1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDT-ILSCSRDNTLIIWKLTR----DDTNYGV 55
             M  E ++L GTL GH GWVTQIAT  +   T +LS SRD T+++W +      D+   G 
Sbjct:     1 MVQEQMKLTGTLEGHTGWVTQIATYTRNDKTTVLSSSRDKTILVWDVDSVAPVDEGPIGR 60

Query:    56 PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115
             P + L GH+HF+SD+V+SSDG +ALSGSWDKTLRLWDL  G +TR+F  HTKDVLSVAFS
Sbjct:    61 PVRSLTGHNHFVSDVVISSDGQFALSGSWDKTLRLWDLNQGVSTRQFISHTKDVLSVAFS 120

Query:   116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175
              DNRQIVS SRDK+IKLWNTLA CK+TI +D H+DWVS VRFSP++++P+IVSAGWD++V
Sbjct:   121 ADNRQIVSGSRDKSIKLWNTLAQCKYTITDDCHTDWVSTVRFSPSNRDPVIVSAGWDKVV 180

Query:   176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
             KVWNL NC+LK NH GHTGY+NTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL  ND
Sbjct:   181 KVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGND 240

Query:   236 IITALCFSPNR 246
             +I A+ FSPNR
Sbjct:   241 VINAMSFSPNR 251

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006997 "nucleus organization" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0000281 "cytokinesis after mitosis" evidence=IMP

GO:0040038 "polar body extrusion after meiotic divisions" evidence=IMP

GO:0051304 "chromosome separation" evidence=IMP

GO:0000776 "kinetochore" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0033365 "protein localization to organelle" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IGI;IMP

GO:0030426 "growth cone" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0044297 "cell body" evidence=IDA

GO:0030334 "regulation of cell migration" evidence=IMP

UNIPROTKB|Q21215 rack-1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Caenorhabditis elegans (taxid:6239)]

 Score = 910 (325.4 bits), Expect = 1.9e-110, Sum P(2) = 1.9e-110
 Identities = 168/251 (66%), Positives = 202/251 (80%)

Query:     1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDT-ILSCSRDNTLIIWKLTR----DDTNYGV 55
             M  E ++L GTL GH GWVTQIAT  +   T +LS SRD T+++W +      D+   G 
Sbjct:     1 MVQEQMKLTGTLEGHTGWVTQIATYTRNDKTTVLSSSRDKTILVWDVDSVAPVDEGPIGR 60

Query:    56 PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115
             P + L GH+HF+SD+V+SSDG +ALSGSWDKTLRLWDL  G +TR+F  HTKDVLSVAFS
Sbjct:    61 PVRSLTGHNHFVSDVVISSDGQFALSGSWDKTLRLWDLNQGVSTRQFISHTKDVLSVAFS 120

Query:   116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175
              DNRQIVS SRDK+IKLWNTLA CK+TI +D H+DWVS VRFSP++++P+IVSAGWD++V
Sbjct:   121 ADNRQIVSGSRDKSIKLWNTLAQCKYTITDDCHTDWVSTVRFSPSNRDPVIVSAGWDKVV 180

Query:   176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
             KVWNL NC+LK NH GHTGY+NTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL  ND
Sbjct:   181 KVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGND 240

Query:   236 IITALCFSPNR 246
             +I A+ FSPNR
Sbjct:   241 VINAMSFSPNR 251

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|G8JL27 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Gallus gallus (taxid:9031)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 199/309 (64%), Positives = 236/309 (76%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct:     5 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 64

Query:    63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
             HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct:    65 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 124

Query:   123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
             S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct:   125 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 184

Query:   183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
             CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   DII ALCF
Sbjct:   185 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF 244

Query:   243 SPNRSFQKIKLDISRTLQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
             SPNR +       S  +   +  +I+  +    + T   +      S+A+S D + + + 
Sbjct:   245 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 304

Query:   301 SRDKTIKLW 309
               D  +++W
Sbjct:   305 YTDNLVRVW 313

GO:0001891 "phagocytic cup" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050765 "negative regulation of phagocytosis" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

UNIPROTKB|P63247 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Gallus gallus (taxid:9031)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 199/309 (64%), Positives = 236/309 (76%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct:     2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query:    63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
             HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct:    62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query:   123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
             S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct:   122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query:   183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
             CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   DII ALCF
Sbjct:   182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF 241

Query:   243 SPNRSFQKIKLDISRTLQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
             SPNR +       S  +   +  +I+  +    + T   +      S+A+S D + + + 
Sbjct:   242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query:   301 SRDKTIKLW 309
               D  +++W
Sbjct:   302 YTDNLVRVW 310

GO:0007165 "signal transduction" evidence=TAS

GO:0001891 "phagocytic cup" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0050765 "negative regulation of phagocytosis" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

UNIPROTKB|P63243 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Bos taurus (taxid:9913)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 199/309 (64%), Positives = 236/309 (76%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct:     2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query:    63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
             HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct:    62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query:   123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
             S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct:   122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query:   183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
             CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   DII ALCF
Sbjct:   182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF 241

Query:   243 SPNRSFQKIKLDISRTLQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
             SPNR +       S  +   +  +I+  +    + T   +      S+A+S D + + + 
Sbjct:   242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query:   301 SRDKTIKLW 309
               D  +++W
Sbjct:   302 YTDNLVRVW 310

GO:0030971 "receptor tyrosine kinase binding" evidence=ISS

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=ISS

GO:0050765 "negative regulation of phagocytosis" evidence=ISS

GO:0043547 "positive regulation of GTPase activity" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0001891 "phagocytic cup" evidence=ISS

GO:0042169 "SH2 domain binding" evidence=ISS

GO:0005080 "protein kinase C binding" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0032464 "positive regulation of protein homooligomerization" evidence=ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0043204 "perikaryon" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

UNIPROTKB|F1PLR0 GNB2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 199/309 (64%), Positives = 236/309 (76%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct:     2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query:    63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
             HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct:    62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query:   123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
             S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct:   122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query:   183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
             CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   DII ALCF
Sbjct:   182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF 241

Query:   243 SPNRSFQKIKLDISRTLQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
             SPNR +       S  +   +  +I+  +    + T   +      S+A+S D + + + 
Sbjct:   242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query:   301 SRDKTIKLW 309
               D  +++W
Sbjct:   302 YTDNLVRVW 310

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0050765 "negative regulation of phagocytosis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0042169 "SH2 domain binding" evidence=IEA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IEA

GO:0008200 "ion channel inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

UNIPROTKB|P63244 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Homo sapiens (taxid:9606)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 199/309 (64%), Positives = 236/309 (76%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct:     2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query:    63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
             HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct:    62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query:   123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
             S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct:   122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query:   183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
             CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   DII ALCF
Sbjct:   182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF 241

Query:   243 SPNRSFQKIKLDISRTLQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
             SPNR +       S  +   +  +I+  +    + T   +      S+A+S D + + + 
Sbjct:   242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query:   301 SRDKTIKLW 309
               D  +++W
Sbjct:   302 YTDNLVRVW 310

GO:0007049 "cell cycle" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0090003 "regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0043204 "perikaryon" evidence=IEA

GO:0005102 "receptor binding" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0030496 "midbody" evidence=IDA

GO:0043025 "neuronal cell body" evidence=ISS

GO:0042169 "SH2 domain binding" evidence=IDA

GO:0030971 "receptor tyrosine kinase binding" evidence=IDA

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=IDA

GO:0030308 "negative regulation of cell growth" evidence=IDA

GO:0051726 "regulation of cell cycle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005080 "protein kinase C binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0032464 "positive regulation of protein homooligomerization" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP;IDA

GO:0030335 "positive regulation of cell migration" evidence=IDA

GO:0043547 "positive regulation of GTPase activity" evidence=IDA

GO:0001891 "phagocytic cup" evidence=IDA

GO:0050765 "negative regulation of phagocytosis" evidence=IMP

GO:0008200 "ion channel inhibitor activity" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IMP

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=IMP

GO:0017148 "negative regulation of translation" evidence=ISS

GO:0061099 "negative regulation of protein tyrosine kinase activity" evidence=IDA

UNIPROTKB|P63246 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1" [Sus scrofa (taxid:9823)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 199/309 (64%), Positives = 236/309 (76%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct:     2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query:    63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
             HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct:    62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query:   123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
             S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct:   122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query:   183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
             CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   DII ALCF
Sbjct:   182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF 241

Query:   243 SPNRSFQKIKLDISRTLQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
             SPNR +       S  +   +  +I+  +    + T   +      S+A+S D + + + 
Sbjct:   242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query:   301 SRDKTIKLW 309
               D  +++W
Sbjct:   302 YTDNLVRVW 310

GO:0061099 "negative regulation of protein tyrosine kinase activity" evidence=ISS

GO:0005080 "protein kinase C binding" evidence=ISS

GO:0030496 "midbody" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0001891 "phagocytic cup" evidence=ISS

GO:0042169 "SH2 domain binding" evidence=ISS

GO:0030971 "receptor tyrosine kinase binding" evidence=ISS

GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0050765 "negative regulation of phagocytosis" evidence=ISS

GO:0043547 "positive regulation of GTPase activity" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0032464 "positive regulation of protein homooligomerization" evidence=ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0001934 "positive regulation of protein phosphorylation" evidence=ISS

GO:2000543 "positive regulation of gastrulation" evidence=ISS

GO:2000114 "regulation of establishment of cell polarity" evidence=ISS

GO:0051302 "regulation of cell division" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0043204 "perikaryon" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0007369 "gastrulation" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

UNIPROTKB|B1N1C2 GNB2L1 "Uncharacterized protein" [Meleagris gallopavo (taxid:9103)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 199/309 (64%), Positives = 236/309 (76%)

Query:     3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct:     2 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61

Query:    63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
             HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct:    62 HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121

Query:   123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
             S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct:   122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181

Query:   183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
             CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL+TL   DII ALCF
Sbjct:   182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCF 241

Query:   243 SPNRSFQKIKLDISRTLQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
             SPNR +       S  +   +  +I+  +    + T   +      S+A+S D + + + 
Sbjct:   242 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301

Query:   301 SRDKTIKLW 309
               D  +++W
Sbjct:   302 YTDNLVRVW 310

GO:0005737 "cytoplasm" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93134	GBLP_BIOGL	No assigned EC number	0.5744	0.8289	0.9968	N/A	N/A
O42249	GBLP_ORENI	No assigned EC number	0.5930	0.8315	0.9968	yes	N/A
O42248	GBLP_DANRE	No assigned EC number	0.6090	0.8315	0.9968	yes	N/A
Q4R7Y4	GBLP_MACFA	No assigned EC number	0.5904	0.8315	0.9968	N/A	N/A
O18640	GBLP_DROME	No assigned EC number	0.6968	0.8289	0.9905	yes	N/A
P46800	GBLP_DICDI	No assigned EC number	0.4613	0.7973	0.9209	yes	N/A
Q21215	GBLP_CAEEL	No assigned EC number	0.5406	0.8289	0.9692	yes	N/A
Q6L4F8	GBLPB_ORYSJ	No assigned EC number	0.4935	0.8131	0.9196	yes	N/A
Q39836	GBLP_SOYBN	No assigned EC number	0.4973	0.8157	0.9538	yes	N/A
Q10281	GBLP_SCHPO	No assigned EC number	0.5222	0.7947	0.9617	yes	N/A
O24076	GBLP_MEDSA	No assigned EC number	0.5026	0.8157	0.9538	N/A	N/A
O24456	GBLPA_ARATH	No assigned EC number	0.5143	0.8184	0.9510	yes	N/A
P38011	GBLP_YEAST	No assigned EC number	0.4433	0.8078	0.9623	yes	N/A
Q39336	GBLP_BRANA	No assigned EC number	0.5078	0.8157	0.9480	N/A	N/A
Q01369	GBLP_NEUCR	No assigned EC number	0.5297	0.8157	0.9810	N/A	N/A
P63243	GBLP_BOVIN	No assigned EC number	0.5904	0.8315	0.9968	yes	N/A
P62884	GBLP_LEIIN	No assigned EC number	0.4153	0.7868	0.9583	yes	N/A
P25387	GBLP_CHLRE	No assigned EC number	0.5469	0.8131	0.9716	N/A	N/A
P63247	GBLP_CHICK	No assigned EC number	0.5904	0.8315	0.9968	yes	N/A
P63246	GBLP_PIG	No assigned EC number	0.5904	0.8315	0.9968	yes	N/A
P63245	GBLP_RAT	No assigned EC number	0.5904	0.8315	0.9968	yes	N/A
P63244	GBLP_HUMAN	No assigned EC number	0.5904	0.8315	0.9968	yes	N/A
P68040	GBLP_MOUSE	No assigned EC number	0.5904	0.8315	0.9968	yes	N/A
Q25306	GBLP_LEIMA	No assigned EC number	0.4153	0.7868	0.9583	yes	N/A
Q25189	GBLP_HYDVU	No assigned EC number	0.5904	0.8289	0.9936	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	380
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-84
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-48
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-36
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-34
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-11
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-05
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-04
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  258 bits (661), Expect = 2e-84
 Identities = 125/366 (34%), Positives = 168/366 (45%), Gaps = 78/366 (21%)

Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           LR TL GH G VT +A +P     + + S D T+ +W     D   G   + LKGH+  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVW-----DLETGELLRTLKGHTGPV 54

Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
            D+  S+DG Y  SGS DKT+RLWDL  G+  R    HT  V SVAFS D R + SSSRD
Sbjct: 55  RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD 114

Query: 128 KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI 187
           KTIK+W+ +   K      GH+DWV+ V FSP+     + S+  D  +K+W+L   K   
Sbjct: 115 KTIKVWD-VETGKCLTTLRGHTDWVNSVAFSPDGT--FVASSSQDGTIKLWDLRTGKCVA 171

Query: 188 NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNR 246
             +GHTG +N+V  SPDG    S   D    LWDL+ GK L TL  H + + ++ FSP+ 
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231

Query: 247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI 306
                                                             + S S D TI
Sbjct: 232 YL------------------------------------------------LASGSEDGTI 243

Query: 307 KLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN 366
           ++W           DL T + V+ L                 SLAWS DG+ L +G +D 
Sbjct: 244 RVW-----------DLRTGECVQTL---------SGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 367 TIRVWQ 372
           TIR+W 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  165 bits (419), Expect = 2e-48
 Identities = 79/221 (35%), Positives = 115/221 (52%), Gaps = 11/221 (4%)

Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
             ET +   TL GH  +V+ +A +P     + S SRD T+ +W     D   G     L+
Sbjct: 79  DLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVW-----DVETGKCLTTLR 132

Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
           GH+ +++ +  S DG +  S S D T++LWDL  GK       HT +V SVAFS D  ++
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKL 192

Query: 122 VSSSRDKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
           +SSS D TIKLW+     C  T+   GH + V+ V FSP+    ++ S   D  ++VW+L
Sbjct: 193 LSSSSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGY--LLASGSEDGTIRVWDL 248

Query: 181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
              +     SGHT  + ++  SPDG   ASG  D    +WD
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  134 bits (339), Expect = 1e-36
 Identities = 80/279 (28%), Positives = 115/279 (41%), Gaps = 76/279 (27%)

Query: 99  TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS 158
            R  + HT  V  VAFS D + + + S D TIK+W+ L   +      GH+  V  V  S
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD-LETGELLRTLKGHTGPVRDVAAS 60

Query: 159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAM 218
            +     + S   D+ +++W+L   +     +GHT Y+++V  SPDG + +S  +D    
Sbjct: 61  ADGTY--LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK 118

Query: 219 LWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
           +WD+  GK L TL  H D                                          
Sbjct: 119 VWDVETGKCLTTLRGHTD------------------------------------------ 136

Query: 278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP--DV 335
                  V SVAFS D   + SSS+D TIKLW           DL T K V  L      
Sbjct: 137 ------WVNSVAFSPDGTFVASSSQDGTIKLW-----------DLRTGKCVATLTGHTGE 179

Query: 336 VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           V+           S+A+S DG+ L +  SD TI++W +S
Sbjct: 180 VN-----------SVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  133 bits (335), Expect = 6e-35
 Identities = 116/378 (30%), Positives = 171/378 (45%), Gaps = 41/378 (10%)

Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSC--SRDNTLIIWKLTRDDTNYGVPQKR 59
                 ++     H+  V+++A +    ++IL    S D T+ +W L+      G   + 
Sbjct: 95  DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS----TPGKLIRT 150

Query: 60  LKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN 118
           L+GHS  ++ +  S DG    SGS  D T++LWDL  GK       HT  V S+AFS D 
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 119 R-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
              I S S D TI+LW+            GHSD V    FSP+    ++ S   D  +++
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPD--GSLLASGSSDGTIRL 267

Query: 178 WNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV---H 233
           W+L +    +   SGH+  + +V  SPDG L ASG  D    LWDL  GK L +L    H
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Query: 234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD 293
              +++L FSP+ S          T++  +L                   +VLSV+FS D
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK------TLEGHSNVLSVSFSPD 381

Query: 294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS 353
            R + S S D T++LW+         +D  T +                      SL +S
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR--------------------VTSLDFS 421

Query: 354 TDGQTLFAGYSDNTIRVW 371
            DG++L +G SDNTIR+W
Sbjct: 422 PDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  132 bits (332), Expect = 2e-34
 Identities = 102/314 (32%), Positives = 150/314 (47%), Gaps = 19/314 (6%)

Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
            +   +L  TL GH+  VT +A +P         S D T+ +W     D   G P   L 
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW-----DLRTGKPLSTLA 195

Query: 62  GHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNR 119
           GH+  +S +  S DG     SGS D T+RLWDL+ GK  R     H+  V+S +FS D  
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGS 254

Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
            + S S D TI+LW+  +         GHS  V  V FSP+ +  ++ S   D  V++W+
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK--LLASGSSDGTVRLWD 312

Query: 180 LTN--CKLKINHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHTLVHNDI 236
           L        +   GH G +++++ SPDGSL  SGG  D    LWDL  GK L TL  +  
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372

Query: 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ 296
           + ++ FSP+         +S       + L+ ++ G +          V S+ FS D + 
Sbjct: 373 VLSVSFSPDGRV------VSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426

Query: 297 IVSSSRDKTIKLWN 310
           + S S D TI+LW+
Sbjct: 427 LASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  113 bits (283), Expect = 8e-28
 Identities = 112/377 (29%), Positives = 171/377 (45%), Gaps = 39/377 (10%)

Query: 9   RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS 68
              L GH   +T IA +P     +LS S D T+ +W L   +      +         ++
Sbjct: 58  SLLLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 69  DIVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR- 126
                 +     S S D T++LWDL+  GK  R  E H++ V S+AFS D + + S S  
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176

Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
           D TIKLW+     K      GH+D VS + FSP+    +I S   D  +++W+L+  KL 
Sbjct: 177 DGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKLL 234

Query: 187 INH-SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV--HNDIITALCFS 243
            +  SGH+  + +   SPDGSL ASG  D    LWDL     L   +  H+  + ++ FS
Sbjct: 235 RSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 244 PNRSFQKIKLDISRTLQKSNLILYPINHGK--METPFFSLFRDVLSVAFSVDNRQIVSS- 300
           P+         ++       + L+ +  GK             V S++FS D   +VS  
Sbjct: 294 PDGKL------LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347

Query: 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF 360
           S D TI+LW           DL T K ++ L                LS+++S DG+ + 
Sbjct: 348 SDDGTIRLW-----------DLRTGKPLKTLEGHS----------NVLSVSFSPDGRVVS 386

Query: 361 AGYSDNTIRVWQVSVTS 377
           +G +D T+R+W +S  S
Sbjct: 387 SGSTDGTVRLWDLSTGS 403

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  108 bits (269), Expect = 5e-26
 Identities = 88/328 (26%), Positives = 137/328 (41%), Gaps = 29/328 (8%)

Query: 52  NYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS 111
           N     K+ +      S  +LS   + +                  ++     H   + S
Sbjct: 11  NKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITS 70

Query: 112 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG-HSDWVSCVRF-SPNHQNPIIVSA 169
           +AFS D   ++S S D TIKLW+     K     +G H   VS +   SP+  + ++ S+
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 170 GWDRMVKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKH 227
             D  VK+W+L+     I    GH+  + ++  SPDG L ASG   D    LWDL  GK 
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 228 LHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL 286
           L TL  H D +++L FSP+            T++     L+ ++ GK+     S   D +
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR-----LWDLSTGKLLRSTLSGHSDSV 245

Query: 287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
             +FS D   + S S D TI+LW+  +              V                  
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL----------------- 288

Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
             S+A+S DG+ L +G SD T+R+W + 
Sbjct: 289 --SVAFSPDGKLLASGSSDGTVRLWDLE 314

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.9 bits (224), Expect = 4e-20
 Identities = 73/223 (32%), Positives = 104/223 (46%), Gaps = 13/223 (5%)

Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           LR TL+GH+  V  +++       + S S D T+ +W L           + L GHS  +
Sbjct: 234 LRSTLSGHSDSV--VSSFSPDGSLLASGSSDGTIRLWDLRSS----SSLLRTLSGHSSSV 287

Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKT--TRRFEDHTKDVLSVAFSVDNRQIVSS- 124
             +  S DG    SGS D T+RLWDL  GK   +   + H   V S++FS D   +VS  
Sbjct: 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347

Query: 125 SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK 184
           S D TI+LW+        +        V  V FSP+ +  ++ S   D  V++W+L+   
Sbjct: 348 SDDGTIRLWDL--RTGKPLKTLEGHSNVLSVSFSPDGR--VVSSGSTDGTVRLWDLSTGS 403

Query: 185 LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
           L  N  GHT  + ++  SPDG   ASG  D    LWDL     
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 81.7 bits (200), Expect = 6e-17
 Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 9/181 (4%)

Query: 11  TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
           TL+GH+  V  +A +P     + S S D T+ +W L   +T   +    LKGH   +S +
Sbjct: 279 TLSGHSSSVLSVAFSPD-GKLLASGSSDGTVRLWDL---ETGKLLSSLTLKGHEGPVSSL 334

Query: 71  VLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT 129
             S DG+     GS D T+RLWDL  GK  +  E H+ +VLSV+FS D R + S S D T
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGT 393

Query: 130 IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH 189
           ++LW+ L+        DGH+  V+ + FSP+ +   + S   D  +++W+L      ++ 
Sbjct: 394 VRLWD-LSTGSLLRNLDGHTSRVTSLDFSPDGK--SLASGSSDNTIRLWDLKTSLKSVSF 450

Query: 190 S 190
           S
Sbjct: 451 S 451

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 4e-11
 Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 1   MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
           + T  L    TL GH G V+ ++ +P     +   S D T+ +W L            + 
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG------KPLKT 366

Query: 61  KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
                 +  +  S DG    SGS D T+RLWDL+ G   R  + HT  V S+ FS D + 
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426

Query: 121 IVSSSRDKTIKLWN 134
           + S S D TI+LW+
Sbjct: 427 LASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 96  GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN 134
           GK  R  + HT  V SVAFS D   + S S D T+++W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 54 GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWD 92
          G   + LKGH+  ++ +  S DGN   SGS D T+R+WD
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 108 DVLSVAFS-VDNRQIVSSSRDKTIKLWNTLA-----HCKFTIVE-DGHSDWVSCVRFSPN 160
            ++ VAF+  D +++ ++S D TI  W         +    IV   GH+  V  V F P+
Sbjct: 77  PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS 136

Query: 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220
             N ++ SAG D +V VW++   K       H+  + ++  + DGSL  +  KD    + 
Sbjct: 137 AMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII 195

Query: 221 DLNDGK 226
           D  DG 
Sbjct: 196 DPRDGT 201

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 54 GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWD 92
          G   K LKGH+  ++ +  S DG Y  SGS D T++LWD
Sbjct: 2  GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 96  GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN 134
           G+  +  + HT  V SVAFS D + + S S D TIKLW+
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
            K      GH+  V+ V FSP+    ++ S   D  V+VW+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGN--LLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 12/148 (8%)

Query: 81  SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-SVDNRQIVSSSRDKTIKLWNTLAHC 139
           S +++  +++WD+A  +     ++H K V S+ + S D   + S S D ++KLW+     
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609

Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGY 195
               ++   +  + CV+F P+     +     D  V  ++L N KL     I HS    Y
Sbjct: 610 SIGTIKTKAN--ICCVQF-PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY 666

Query: 196 LNTVTVSPDGSLCASGGKDMNAMLWDLN 223
           +  V    D S   S   D    LWDL+
Sbjct: 667 VRFV----DSSTLVSSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
            GH+  V+ V FSP+ +   + S   D  +K+W+
Sbjct: 9   KGHTGPVTSVAFSPDGK--YLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
            KL     GHTG + +V  SPDG+L ASG  D    +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 58/278 (20%), Positives = 107/278 (38%), Gaps = 34/278 (12%)

Query: 14  GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD--DTNYGVPQKRLKGHSHFISDIV 71
           G  G +  +A NP  P  + + S D T++ W +  +    N   P   L+GH+  +  + 
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 72  LSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI 130
                   L S   D  + +WD+  GK     + H+  + S+ +++D   + ++S+DK +
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 131 KLWNTLAHCKFTIVEDGHSD-------WVSCVRFSPNHQNPII---VSAGWDRMVKVWNL 180
              N +     TIV    +         +   R     ++ II    S    R + +W+ 
Sbjct: 193 ---NIIDPRDGTIVSSVEAHASAKSQRCLWAKR-----KDLIITLGCSKSQQRQIMLWDT 244

Query: 181 TNCKLKINHSGHTGYLN--TVTVSP----DGSLCASGGK-DMNAMLWDLNDGKHL--HTL 231
                K+     T  L+  +    P    D +L   G K + N   ++L + +     + 
Sbjct: 245 R----KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300

Query: 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPI 269
              +    LC  P  S    K +I+R    +   LY I
Sbjct: 301 SSVEPHKGLCMMPKWSLDTRKCEIARFYALTYHSLYTI 338

Length = 493

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGV---PQKRLKGHSHFIS 68
           L GH   +  +  NP F + + S S D T+ +W++  +D +      PQ  LKGH   IS
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 69  DIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFE 103
            I  +    Y + S  +D  + +WD+   K  R F+
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQ 163

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 285 VLSVAFSVDNRQIVSSSRDKTIKLWN 310
           V SVAFS D   + S S D T+++W+
Sbjct: 14  VTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 16/32 (50%), Positives = 18/32 (56%)

Query: 190 SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
            GHTG + +V  SPDG   ASG  D    LWD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 10/148 (6%)

Query: 166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLND 224
           + S+ ++ +V+VW++   +L      H   + ++  S  D +L ASG  D +  LW +N 
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD 284
           G  + T+     I  + F P+ S + +    +       +  Y + + K+  P  ++   
Sbjct: 608 GVSIGTIKTKANICCVQF-PSESGRSLAFGSA----DHKVYYYDLRNPKL--PLCTMIGH 660

Query: 285 VLSVAFS--VDNRQIVSSSRDKTIKLWN 310
             +V++   VD+  +VSSS D T+KLW+
Sbjct: 661 SKTVSYVRFVDSSTLVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 5  TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK 45
          + +L  TL GH G VT +A +P     + S S D T+ +W 
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 7  QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK 45
          +L  TL GH G VT +A +P     + S S D T+ +W 
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 285 VLSVAFSVDNRQIVSSSRDKTIKLWN 310
           V SVAFS D + + S S D TIKLW+
Sbjct: 15  VTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 19/204 (9%)

Query: 19  VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGN 77
           ++ I  N      + S + +  + +W + R           +K H   +  I  SS D  
Sbjct: 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQL-----VTEMKEHEKRVWSIDYSSADPT 589

Query: 78  YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTL 136
              SGS D +++LW +  G +    +    ++  V F  ++ R +   S D  +  ++ L
Sbjct: 590 LLASGSDDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSESGRSLAFGSADHKVYYYD-L 647

Query: 137 AHCKFTIVED-GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS----- 190
            + K  +    GHS  VS VRF     +  +VS+  D  +K+W+L+     IN +     
Sbjct: 648 RNPKLPLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704

Query: 191 -GHTGYLNTVTVSPDGSLCASGGK 213
            GHT   N V +S      A+G +
Sbjct: 705 MGHTNVKNFVGLSVSDGYIATGSE 728

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
KOG0279|consensus	315		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0272|consensus	459		100.0
KOG0318|consensus	603		100.0
KOG0272|consensus	459		100.0
KOG0286|consensus	343		100.0
KOG0273|consensus	524		100.0
KOG0645|consensus	312		100.0
KOG0315|consensus	311		100.0
KOG0318|consensus	603		100.0
KOG0291|consensus	893		100.0
KOG0284|consensus	464		100.0
KOG0291|consensus	893		100.0
KOG0285|consensus	460		100.0
KOG0296|consensus	399		100.0
KOG0295|consensus	406		100.0
KOG0286|consensus	343		100.0
KOG0265|consensus	338		100.0
KOG0263|consensus	707		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0319|consensus	775		100.0
KOG0279|consensus	315		100.0
KOG0319|consensus	775		100.0
KOG0263|consensus	707		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0316|consensus	307		100.0
KOG0266|consensus	456		100.0
KOG0643|consensus	327		100.0
KOG0293|consensus	519		100.0
KOG0315|consensus	311		100.0
KOG0273|consensus	524		100.0
KOG0282|consensus	503		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0276|consensus	794		100.0
KOG0295|consensus	406		100.0
KOG0265|consensus	338		100.0
KOG0284|consensus	464		100.0
KOG0313|consensus	423		100.0
KOG0281|consensus	499		100.0
KOG0306|consensus	888		100.0
KOG0266|consensus	456		100.0
KOG0288|consensus	459		100.0
KOG0278|consensus	334		100.0
KOG0276|consensus	794		100.0
KOG0278|consensus	334		100.0
KOG0310|consensus	487		100.0
KOG0293|consensus	519		100.0
KOG0268|consensus	433		100.0
KOG1407|consensus	313		100.0
KOG0292|consensus	1202		100.0
KOG0282|consensus	503		100.0
KOG0275|consensus	508		100.0
KOG0296|consensus	399		100.0
KOG0306|consensus	888		100.0
KOG1539|consensus	910		100.0
KOG0292|consensus	1202		100.0
KOG0645|consensus	312		100.0
KOG0285|consensus	460		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0277|consensus	311		100.0
KOG0283|consensus	712		100.0
KOG0305|consensus	484		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281|consensus	499		100.0
KOG0973|consensus	942		100.0
KOG0308|consensus	735		100.0
KOG0316|consensus	307		99.98
KOG0277|consensus	311		99.98
KOG0289|consensus	506		99.98
KOG0301|consensus	745		99.98
KOG1539|consensus	910		99.98
KOG0640|consensus	430		99.98
KOG0299|consensus	479		99.98
KOG0647|consensus	347		99.97
KOG0275|consensus	508		99.97
KOG0313|consensus	423		99.97
KOG1446|consensus	311		99.97
KOG0973|consensus	942		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1063|consensus	764		99.97
KOG0640|consensus	430		99.97
KOG0772|consensus	641		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0264|consensus	422		99.97
KOG0268|consensus	433		99.97
KOG0274|consensus	537		99.97
KOG0305|consensus	484		99.97
KOG0643|consensus	327		99.97
KOG0639|consensus	705		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1408|consensus	1080		99.97
KOG0308|consensus	735		99.97
KOG1036|consensus	323		99.97
KOG1446|consensus	311		99.97
KOG1407|consensus	313		99.97
KOG0641|consensus	350		99.97
KOG0283|consensus	712		99.97
KOG0300|consensus	481		99.96
KOG0294|consensus	362		99.96
KOG1332|consensus	299		99.96
KOG2106|consensus	626		99.96
KOG0772|consensus	641		99.96
KOG0310|consensus	487		99.96
KOG2096|consensus	420		99.96
KOG2106|consensus	626		99.96
KOG1332|consensus	299		99.96
KOG0299|consensus	479		99.96
KOG0288|consensus	459		99.96
KOG2096|consensus	420		99.95
KOG4283|consensus	397		99.95
KOG0264|consensus	422		99.95
KOG0294|consensus	362		99.95
KOG0301|consensus	745		99.95
KOG0274|consensus	537		99.95
KOG0641|consensus	350		99.95
KOG0300|consensus	481		99.95
KOG1408|consensus	1080		99.95
KOG4328|consensus	498		99.95
KOG1063|consensus	764		99.95
KOG0269|consensus	839		99.95
KOG2048|consensus	691		99.94
KOG0647|consensus	347		99.94
KOG2055|consensus	514		99.94
KOG0289|consensus	506		99.94
KOG2445|consensus	361		99.94
KOG0650|consensus	733		99.94
KOG0646|consensus	476		99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG2445|consensus	361		99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1274|consensus	933		99.93
KOG4283|consensus	397		99.93
KOG1274|consensus	933		99.93
KOG1036|consensus	323		99.93
KOG0269|consensus	839		99.93
KOG0321|consensus	720		99.93
KOG0267|consensus	825		99.93
KOG0267|consensus	825		99.92
KOG1445|consensus	1012		99.92
KOG1273|consensus	405		99.92
KOG2048|consensus	691		99.92
KOG0646|consensus	476		99.92
KOG0270|consensus	463		99.91
KOG0302|consensus	440		99.91
KOG0639|consensus	705		99.91
KOG1273|consensus	405		99.91
KOG0307|consensus	1049		99.91
KOG1007|consensus	370		99.9
KOG1034|consensus	385		99.9
KOG1538|consensus	1081		99.9
KOG1009|consensus	434		99.89
KOG0302|consensus	440		99.89
KOG4378|consensus	673		99.89
KOG0303|consensus	472		99.89
KOG0642|consensus	577		99.88
KOG2919|consensus	406		99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG4227|consensus	609		99.87
KOG0321|consensus	720		99.87
KOG1188|consensus	376		99.87
KOG0270|consensus	463		99.87
KOG1007|consensus	370		99.86
KOG1034|consensus	385		99.86
KOG1963|consensus	792		99.86
KOG1524|consensus	737		99.86
KOG4378|consensus	673		99.85
KOG4328|consensus	498		99.85
KOG2055|consensus	514		99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1188|consensus	376		99.84
KOG1009|consensus	434		99.83
KOG0290|consensus	364		99.83
KOG0644|consensus	1113		99.83
KOG0307|consensus	1049		99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG0650|consensus	733		99.8
KOG1240|consensus	1431		99.8
KOG1538|consensus	1081		99.8
KOG0303|consensus	472		99.8
KOG1310|consensus	758		99.8
KOG0642|consensus	577		99.79
KOG0649|consensus	325		99.79
KOG1517|consensus	1387		99.79
KOG1587|consensus	555		99.78
KOG2110|consensus	391		99.78
KOG0322|consensus	323		99.78
KOG0644|consensus	1113		99.77
KOG0290|consensus	364		99.77
KOG1445|consensus	1012		99.76
KOG1587|consensus	555		99.76
KOG0771|consensus	398		99.75
KOG1334|consensus	559		99.74
KOG1523|consensus	361		99.74
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG0771|consensus	398		99.74
KOG1240|consensus	1431		99.73
KOG1310|consensus	758		99.73
KOG1963|consensus	792		99.73
KOG0649|consensus	325		99.73
KOG2919|consensus	406		99.71
KOG2110|consensus	391		99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG1517|consensus	1387		99.7
KOG4227|consensus	609		99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG1524|consensus	737		99.66
KOG1523|consensus	361		99.66
KOG2139|consensus	445		99.66
KOG3881|consensus	412		99.65
KOG2394|consensus	636		99.65
KOG1409|consensus	404		99.64
KOG1354|consensus	433		99.63
KOG0322|consensus	323		99.63
KOG2111|consensus	346		99.6
KOG4497|consensus	447		99.6
PRK02889	427	tolB translocation protein TolB; Provisional	99.59
KOG1334|consensus	559		99.58
KOG4497|consensus	447		99.57
PRK04922	433	tolB translocation protein TolB; Provisional	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
KOG1354|consensus	433		99.56
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.56
KOG1272|consensus	545		99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
KOG2111|consensus	346		99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
KOG3881|consensus	412		99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
KOG2394|consensus	636		99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
KOG2139|consensus	445		99.5
KOG1272|consensus	545		99.49
KOG1064|consensus	2439		99.49
KOG2315|consensus	566		99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG2321|consensus	703		99.47
KOG0974|consensus	967		99.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.44
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
KOG0974|consensus	967		99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
KOG4190|consensus	1034		99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
KOG1409|consensus	404		99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
KOG4547|consensus	541		99.29
KOG2321|consensus	703		99.29
PRK04792	448	tolB translocation protein TolB; Provisional	99.27
KOG0280|consensus	339		99.27
KOG2314|consensus	698		99.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.27
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.26
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.26
KOG2041|consensus	1189		99.26
KOG2314|consensus	698		99.26
KOG4547|consensus	541		99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.23
KOG0882|consensus	558		99.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
PRK04792	448	tolB translocation protein TolB; Provisional	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.19
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.18
KOG2315|consensus	566		99.18
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.16
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
COG4946	668	Uncharacterized protein related to the periplasmic	99.14
KOG4714|consensus	319		99.14
KOG4190|consensus	1034		99.12
KOG0280|consensus	339		99.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.09
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.08
KOG3914|consensus	390		99.07
KOG1064|consensus	2439		99.06
KOG0309|consensus	1081		99.06
PRK04043	419	tolB translocation protein TolB; Provisional	98.97
KOG2041|consensus	1189		98.96
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.94
KOG4532|consensus	344		98.92
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.9
KOG1912|consensus	1062		98.9
KOG0882|consensus	558		98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.89
KOG3914|consensus	390		98.89
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.86
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
KOG0309|consensus	1081		98.86
KOG4532|consensus	344		98.85
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.78
KOG1912|consensus	1062		98.78
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.77
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.76
KOG2695|consensus	425		98.64
KOG4714|consensus	319		98.63
KOG2695|consensus	425		98.63
KOG3617|consensus	1416		98.62
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.59
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.56
KOG1832|consensus	1516		98.55
KOG1920|consensus	1265		98.55
KOG1275|consensus	1118		98.54
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.54
KOG1645|consensus	463		98.5
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.42
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.39
KOG2066|consensus	846		98.34
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.34
KOG2114|consensus	933		98.33
PRK02888	635	nitrous-oxide reductase; Validated	98.32
KOG2066|consensus	846		98.3
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.3
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.28
KOG3617|consensus	1416		98.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
KOG1832|consensus	1516		98.17
KOG1275|consensus	1118		98.13
KOG1920|consensus	1265		98.11
KOG2114|consensus	933		98.1
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.01
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.0
KOG1645|consensus	463		97.94
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.86
KOG3621|consensus	726		97.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.84
KOG4649|consensus	354		97.83
KOG1008|consensus	783		97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
COG3391	381	Uncharacterized conserved protein [Function unknow	97.76
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.76
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.75
PRK02888	635	nitrous-oxide reductase; Validated	97.74
KOG4640|consensus	665		97.63
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.58
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.56
KOG1008|consensus	783		97.54
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.51
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.49
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.47
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.44
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.42
KOG2395|consensus	644		97.42
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.41
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.41
KOG3621|consensus	726		97.37
KOG4640|consensus	665		97.36
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.3
KOG2444|consensus	238		97.25
PRK13616	591	lipoprotein LpqB; Provisional	97.17
KOG4649|consensus	354		97.15
COG3391	381	Uncharacterized conserved protein [Function unknow	97.06
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.02
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.99
PRK13616	591	lipoprotein LpqB; Provisional	96.85
KOG2444|consensus	238		96.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.79
KOG2395|consensus	644		96.7
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.63
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.63
KOG2079|consensus	1206		96.57
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.49
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.48
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.06
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.99
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.97
KOG2079|consensus	1206		95.91
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.81
PHA02713	557	hypothetical protein; Provisional	95.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.47
KOG1916|consensus	1283		95.03
KOG4499|consensus	310		94.99
PHA02713	557	hypothetical protein; Provisional	94.93
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.39
KOG2377|consensus	657		94.35
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.16
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.06
KOG1897|consensus	1096		94.05
KOG4441|consensus	571		93.89
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.87
PHA03098	534	kelch-like protein; Provisional	93.83
KOG4499|consensus	310		93.59
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.44
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.26
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.2
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.11
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.11
COG5167	776	VID27 Protein involved in vacuole import and degra	93.1
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.01
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.98
KOG4460|consensus	741		92.91
COG5276	370	Uncharacterized conserved protein [Function unknow	92.82
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.44
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.4
KOG4441|consensus	571		91.98
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.85
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.64
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.53
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.42
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.1
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	90.76
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.36
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.23
COG5167	776	VID27 Protein involved in vacuole import and degra	90.06
PHA03098	534	kelch-like protein; Provisional	90.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.64
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.26
PRK13684	334	Ycf48-like protein; Provisional	89.26
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.22
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.89
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.67
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.47
KOG2247|consensus	615		88.35
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	88.27
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.03
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.99
COG4590	733	ABC-type uncharacterized transport system, permeas	87.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	87.29
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	87.11
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.05
KOG3630|consensus	1405		86.62
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.62
KOG4460|consensus	741		86.51
PHA02790	480	Kelch-like protein; Provisional	86.47
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.38
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.16
KOG2280|consensus	829		86.14
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.93
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.53
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.42
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.51
KOG2377|consensus	657		83.41
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.35
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.15
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	81.88
PRK10115	686	protease 2; Provisional	81.87
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.8
KOG1900|consensus	1311		81.55
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.38
KOG1900|consensus	1311		81.35
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	81.31
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.18
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.65
KOG3630|consensus	1405		80.17
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	80.14

>KOG0279|consensus

Probab=100.00  E-value=7.4e-60  Score=367.15  Aligned_cols=312  Identities=67%  Similarity=1.146  Sum_probs=281.3

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      +.+.+..+|+||+++|+.++..+..++.+++++.|.++.+|++..++..++.++++++||...|+.+..++||+++++++
T Consensus         3 e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    3 EQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             hhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            56788999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      +|+.+++||+.+++..+.+.+|...|.+++|++|.+.+++|++|+++++|++...+.....+..+.++|.|++|+|+..+
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999988888777999999999999888


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                      ++++++++|++||+||++++++...+.+|.+.++.++++|||.+.++|+.||.+.+||++.++.++.+.+...|.+++|+
T Consensus       163 p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs  242 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS  242 (315)
T ss_pred             cEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999988777776666666665


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE  323 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  323 (380)
                      |+                                                ...|+.+ .+-.|+|||.           +
T Consensus       243 pn------------------------------------------------rywL~~a-t~~sIkIwdl-----------~  262 (315)
T KOG0279|consen  243 PN------------------------------------------------RYWLCAA-TATSIKIWDL-----------E  262 (315)
T ss_pred             CC------------------------------------------------ceeEeec-cCCceEEEec-----------c
Confidence            54                                                3334433 3456999975           5


Q ss_pred             cceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         324 TKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +...+++++++..........+.|.+++||+||+.|++|-.|+.|++|.+..
T Consensus       263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            5556666666665555667788899999999999999999999999999864

>KOG0271|consensus

Probab=100.00  E-value=4.8e-55  Score=354.13  Aligned_cols=330  Identities=29%  Similarity=0.541  Sum_probs=284.9

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .+...+.||.+.|.++.|+|+ +..|+||+.|.++|+||+..+     .|..+.++|.+.|.|++|+|||+.||+|+.||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg  179 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG  179 (480)
T ss_pred             eeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCC-----CcceeecCCccEEEEEEECCCcchhhccccCC
Confidence            356789999999999999997 789999999999999998654     35667899999999999999999999999999


Q ss_pred             cEEEEECCCCcee-eeecccCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          87 TLRLWDLAAGKTT-RRFEDHTKDVLSVAFSV-----DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        87 ~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~-----~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      +|++||..+++.. +.+.+|...|++++|.|     ..+++|+++.||.++|||+..+..... ..+|+..|+|++|-- 
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~-lsgHT~~VTCvrwGG-  257 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT-LSGHTASVTCVRWGG-  257 (480)
T ss_pred             eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE-eccCccceEEEEEcC-
Confidence            9999999887664 56899999999999964     678999999999999999876655444 459999999999953 


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEc-----------CCC------------------------
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVS-----------PDG------------------------  205 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~-----------~~~------------------------  205 (380)
                        ..++++|+.|++|++|+...+++...+++|...|+.++.+           |.+                        
T Consensus       258 --~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~  335 (480)
T KOG0271|consen  258 --EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS  335 (480)
T ss_pred             --CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence              3489999999999999999999988999999999999887           223                        


Q ss_pred             -CEEEEEcCCCcEEEEECCCCc-EEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984         206 -SLCASGGKDMNAMLWDLNDGK-HLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF  282 (380)
Q Consensus       206 -~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (380)
                       +.+++|+.|.++.+|+....+ ++..+ .|...|+.+.|||++.+.      +...-+.++.+|+-.+|+....|.+|-
T Consensus       336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I------ASaSFDkSVkLW~g~tGk~lasfRGHv  409 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI------ASASFDKSVKLWDGRTGKFLASFRGHV  409 (480)
T ss_pred             cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE------EEeecccceeeeeCCCcchhhhhhhcc
Confidence             359999999999999865443 44433 688899999999998873      334457889999999999999999999


Q ss_pred             cceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE
Q psy6984         283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG  362 (380)
Q Consensus       283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g  362 (380)
                      ..|+.++|+.|.++|+||+.|.++++|++           .++++...         .+.|...|+++.|+|||+.+++|
T Consensus       410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V-----------~tkKl~~D---------LpGh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  410 AAVYQVAWSADSRLLVSGSKDSTLKVWDV-----------RTKKLKQD---------LPGHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             ceeEEEEeccCccEEEEcCCCceEEEEEe-----------eeeeeccc---------CCCCCceEEEEEecCCCceeecC
Confidence            99999999999999999999999999975           34444332         24577889999999999999999


Q ss_pred             eeCCeEEEEE
Q psy6984         363 YSDNTIRVWQ  372 (380)
Q Consensus       363 ~~dg~v~iw~  372 (380)
                      +.|..+++|.
T Consensus       470 gkdkv~~lw~  479 (480)
T KOG0271|consen  470 GKDKVLRLWR  479 (480)
T ss_pred             CCceEEEeec
Confidence            9999999995

>KOG0271|consensus

Probab=100.00  E-value=6.3e-47  Score=307.06  Aligned_cols=297  Identities=28%  Similarity=0.441  Sum_probs=248.5

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..+.||...|.|+.|+|+|.+|++|+-|.++++||+.+..+..++++|..-|.|++|+|||+.||+|+.||.|++||..+
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCC---CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNH---QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      +........+|..+|.+++|.|-+   ....|++++.||.|+|||+..+.......+|+.+|+|+.|-.+| ++++|++|
T Consensus       189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~D  267 (480)
T KOG0271|consen  189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQD  267 (480)
T ss_pred             CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCC
Confidence            776666667999999999998743   33479999999999999999999999999999999999997654 88999999


Q ss_pred             CcEEEEECCCCcEEEEEE-ecCceEEEEeecCc-----------cc---------------cee----eeeeeeeccccc
Q psy6984         215 MNAMLWDLNDGKHLHTLV-HNDIITALCFSPNR-----------SF---------------QKI----KLDISRTLQKSN  263 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~-----------~~---------------~~~----~~~~~~~~~~~~  263 (380)
                      ++|++|+...|...+.+. |...|+.++.+.+.           ..               .+.    .........+..
T Consensus       268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t  347 (480)
T KOG0271|consen  268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT  347 (480)
T ss_pred             ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence            999999999988777774 66778888876321           11               000    011223445677


Q ss_pred             eEEEEcCCce-eeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCC
Q psy6984         264 LILYPINHGK-METPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKA  342 (380)
Q Consensus       264 ~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (380)
                      +++|+....+ ....+.+|..-|..+.||||++++||++.|..|++|+..++..           +..         .+.
T Consensus       348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-----------las---------fRG  407 (480)
T KOG0271|consen  348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-----------LAS---------FRG  407 (480)
T ss_pred             EEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch-----------hhh---------hhh
Confidence            8888765443 5566778888899999999999999999999999998644432           222         234


Q ss_pred             CCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         343 DPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       343 ~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      |-..|+.++||.|.++|++||.|.++++|+|.+
T Consensus       408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             ccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence            556789999999999999999999999999864

>KOG0272|consensus

Probab=100.00  E-value=2.5e-47  Score=312.96  Aligned_cols=289  Identities=24%  Similarity=0.398  Sum_probs=248.1

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC--CCEEEEEeCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD--GNYALSGSWD   85 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d   85 (380)
                      +...--|-..+|..+.++++ ++.|+|||.+|.++||+.+...     ....+.||...|.++.|+|.  +..+||++.|
T Consensus       167 l~~SQ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~-----~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  167 LVCSQVGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCN-----LLQTLRGHTSRVGAAVFHPVDSDLNLATASAD  240 (459)
T ss_pred             hhhhhccCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcc-----eeEEEeccccceeeEEEccCCCccceeeeccC
Confidence            44444466789999999997 7899999999999999876432     24568999999999999997  5689999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      |.+++|++.+..++..+.+|...|..++|+|+|++|+|++.|.+-++||+.++.... ..++|+..|.+++|+|++.  +
T Consensus       241 gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGS--L  317 (459)
T KOG0272|consen  241 GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGS--L  317 (459)
T ss_pred             CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCc--e
Confidence            999999999999999999999999999999999999999999999999988776543 3469999999999999875  7


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecC
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPN  245 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~  245 (380)
                      ++|||.|..-|+||+++++.+..+.+|..+|.+++|+|+|..+|+|+.|++++|||++..+.++++              
T Consensus       318 ~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i--------------  383 (459)
T KOG0272|consen  318 AATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI--------------  383 (459)
T ss_pred             eeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec--------------
Confidence            899999999999999999999999999999999999999999999999999999999865543332              


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee-cCCEEEEeeCCCcEEEEecccceeeeEeeccc
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLET  324 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~  324 (380)
                                                       ..|..-|+.+.|+| .|.+|+|++.|+++++|...+           
T Consensus       384 ---------------------------------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-----------  419 (459)
T KOG0272|consen  384 ---------------------------------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-----------  419 (459)
T ss_pred             ---------------------------------ccccchhhheEecccCCeEEEEcccCcceeeecCCC-----------
Confidence                                             12334466778887 678899999999999996422           


Q ss_pred             ceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         325 KKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ...+         +.-..|...|.++..++|++.+++++.|+++++|.
T Consensus       420 ~~~~---------ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  420 WSPL---------KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccc---------hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            2222         22346778899999999999999999999999996

>KOG0318|consensus

Probab=100.00  E-value=2.5e-42  Score=291.01  Aligned_cols=344  Identities=19%  Similarity=0.324  Sum_probs=267.2

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      .+-..++.||+..|+++++-|..|.+++|||+|++|.+|+-++-    .+ ...++.|..+|+|+.|+|||+++++++.|
T Consensus       137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF----KF-k~s~r~HskFV~~VRysPDG~~Fat~gsD  211 (603)
T KOG0318|consen  137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF----KF-KSSFREHSKFVNCVRYSPDGSRFATAGSD  211 (603)
T ss_pred             CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe----ee-eecccccccceeeEEECCCCCeEEEecCC
Confidence            34467899999999999999998999999999999999975432    22 12467899999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCC---cCcEEEEEEcc
Q psy6984          86 KTLRLWDLAAGKTTRRFE---DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGH---SDWVSCVRFSP  159 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~  159 (380)
                      |.|.+||-.+++.+..+.   .|.+.|.+++|+||++.++|++.|.+++|||.........+..+.   ...+.|+--  
T Consensus       212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--  289 (603)
T KOG0318|consen  212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--  289 (603)
T ss_pred             ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--
Confidence            999999999999999987   899999999999999999999999999999987765544433222   233555432  


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--Eec---
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL--VHN---  234 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~---  234 (380)
                         +..|++.+.+|+|.+++...+.......||...|+++..+|++.+|.+|++||.|.-|+..++..-...  .|.   
T Consensus       290 ---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI  366 (603)
T KOG0318|consen  290 ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI  366 (603)
T ss_pred             ---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence               236899999999999999999888889999999999999999999999999999999998765422110  011   


Q ss_pred             ---------------------------------------CceEEEEeecCcccceee-----------------------
Q psy6984         235 ---------------------------------------DIITALCFSPNRSFQKIK-----------------------  252 (380)
Q Consensus       235 ---------------------------------------~~i~~~~~~~~~~~~~~~-----------------------  252 (380)
                                                             .+...++..+++....+.                       
T Consensus       367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~  446 (603)
T KOG0318|consen  367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES  446 (603)
T ss_pred             EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence                                                   111222222221111000                       


Q ss_pred             ---------eeeeeeccccceEEEEcCCcee--eeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984         253 ---------LDISRTLQKSNLILYPINHGKM--ETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       253 ---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                               .......+++.+.+|.+..+..  +..+..|..++++++||||+.|||+|...+.|.+|+...+..     
T Consensus       447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~-----  521 (603)
T KOG0318|consen  447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV-----  521 (603)
T ss_pred             ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce-----
Confidence                     0122234566788888877543  345677888999999999999999999999999998654321     


Q ss_pred             cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeecc
Q psy6984         322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR  378 (380)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~~  378 (380)
                       .+..             ...|...|.+++|||+++++|+|+-|..|.||++..|..
T Consensus       522 -~~~~-------------w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  522 -KTNR-------------WAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             -ecce-------------eeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence             1111             223566789999999999999999999999999987653

>KOG0272|consensus

Probab=100.00  E-value=6.5e-45  Score=298.81  Aligned_cols=252  Identities=28%  Similarity=0.445  Sum_probs=228.2

Q ss_pred             eeeEEeEEecCcccceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      ++.++..+|.||+..|.++.|+|. ....+|||+.||++++|+++..     .+...+.+|...|..++|+|+|++|+|+
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-----~~l~~l~gH~~RVs~VafHPsG~~L~Ta  279 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-----TPLQDLEGHLARVSRVAFHPSGKFLGTA  279 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-----cchhhhhcchhhheeeeecCCCceeeec
Confidence            456789999999999999999998 4678999999999999998754     2456789999999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      +.|.+-++||+.++..+...++|...|.+++|.|||.+++||+.|..-+|||++++..+..+ .+|...|..+.|+|++.
T Consensus       280 sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L-~gH~k~I~~V~fsPNGy  358 (459)
T KOG0272|consen  280 SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL-AGHIKEILSVAFSPNGY  358 (459)
T ss_pred             ccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe-cccccceeeEeECCCce
Confidence            99999999999999988888999999999999999999999999999999999998877665 47999999999999875


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                        .++||+.|++++|||++.......+++|..-|+.+.|+| .|.+|++++.|+++++|...+..+++            
T Consensus       359 --~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k------------  424 (459)
T KOG0272|consen  359 --HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK------------  424 (459)
T ss_pred             --EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch------------
Confidence              699999999999999999888888999999999999999 78899999999999999876654432            


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                                                         .+.+|.+.|.+++.+||+.+++|++.|+++++|.
T Consensus       425 -----------------------------------sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  425 -----------------------------------SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             -----------------------------------hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence                                               3446777889999999999999999999999994

>KOG0286|consensus

Probab=100.00  E-value=3.6e-42  Score=270.21  Aligned_cols=294  Identities=25%  Similarity=0.439  Sum_probs=249.2

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      .++...+|+||.+.|+++.|.++ .++|+++|.||.+.|||.-..+....     ++-....|..++|+|.|+++|+|+.
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~ha-----ipl~s~WVMtCA~sPSg~~VAcGGL  117 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHA-----IPLPSSWVMTCAYSPSGNFVACGGL  117 (343)
T ss_pred             eeeeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeE-----EecCceeEEEEEECCCCCeEEecCc
Confidence            34566899999999999999998 68999999999999999655443332     2334567999999999999999999


Q ss_pred             CCcEEEEECCCC------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          85 DKTLRLWDLAAG------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        85 d~~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                      |....||++.+.      +..+.+.+|.+-+.|+.|-+ ..+|+|+|.|.+..+||+.++..... ..+|...|-++.+.
T Consensus       118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~-f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQV-FHGHTGDVMSLSLS  195 (343)
T ss_pred             CceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEE-ecCCcccEEEEecC
Confidence            999999999854      45567889999999999976 56789999999999999988766544 45999999999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      |. +.+.+++|+.|+..++||++.+..+..+.+|...|+++.|.|+|.-|++|+.|+..++||++..+.+..+.++.   
T Consensus       196 p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~---  271 (343)
T KOG0286|consen  196 PS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS---  271 (343)
T ss_pred             CC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc---
Confidence            95 33479999999999999999999999999999999999999999999999999999999999877665543211   


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                                                                ...+|++++||..|++|+.|..|.++.+||..++....
T Consensus       272 ------------------------------------------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg  309 (343)
T KOG0286|consen  272 ------------------------------------------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG  309 (343)
T ss_pred             ------------------------------------------ccCCceeEEEcccccEEEeeecCCceeEeeccccceEE
Confidence                                                      11357899999999999999999999999986655433


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ++                    ..|...|.++..+|||..|++||=|..+|||.
T Consensus       310 ~L--------------------~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  310 VL--------------------AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             Ee--------------------eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            32                    24566788999999999999999999999994

>KOG0273|consensus

Probab=100.00  E-value=7.9e-41  Score=278.38  Aligned_cols=338  Identities=24%  Similarity=0.349  Sum_probs=273.4

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCC-CCCcc---ccc-ccccCC----CcceEEEEEccCCCEEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD-DTNYG---VPQ-KRLKGH----SHFISDIVLSSDGNYALS   81 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~-~~~~~---~~~-~~~~~h----~~~v~~~~~~~~~~~l~s   81 (380)
                      .+.+|+..|...+|+|.....+++++.|-+.++|++... .....   +.. .+..++    ...|++++|+.+|+.||+
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat  252 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT  252 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence            344599999999999986559999999999999998641 10000   000 011112    246999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      |+.||.+++|+. +|..+..+..|+++|.+++|+.+|.++++++.|+++.+||..++...+... -|+...-.+.|-.+ 
T Consensus       253 G~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~-  329 (524)
T KOG0273|consen  253 GSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSN-  329 (524)
T ss_pred             eecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEecC-
Confidence            999999999995 577888899999999999999999999999999999999987766655543 35544345666543 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITAL  240 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~  240 (380)
                        ..|++++.|+.|+++.+....+...+.+|.+.|+++.|+|.|.+|++++.|++++||+.......+.+ .|...|..+
T Consensus       330 --~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~  407 (524)
T KOG0273|consen  330 --DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTI  407 (524)
T ss_pred             --ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeE
Confidence              25899999999999999988888899999999999999999999999999999999998777766666 477889999


Q ss_pred             EeecCcccce---eeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984         241 CFSPNRSFQK---IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       241 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                      .|+|.++...   ....++....++.+.+|++..+.+...|..|..+|++++|||+|+|+|+|+.||.|.+|++..    
T Consensus       408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~----  483 (524)
T KOG0273|consen  408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT----  483 (524)
T ss_pred             eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc----
Confidence            9999875422   223344455678899999999999999999999999999999999999999999999998643    


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                             .++....+          ....|+.++|+.+|..|.+.-.||.+++-|+.
T Consensus       484 -------~~l~~s~~----------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  484 -------GKLVKSYQ----------GTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             -------hheeEeec----------CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence                   33333222          22347899999999999988899999998864

>KOG0645|consensus

Probab=100.00  E-value=2.1e-40  Score=257.64  Aligned_cols=300  Identities=23%  Similarity=0.386  Sum_probs=239.1

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      +.++..++||.++|-.++|+|..+..|||||.|+.||+|+....+. +......-.+|+..|..++|+|.|++|++||.|
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD   82 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD   82 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence            5678899999999999999997566899999999999999874221 221111224899999999999999999999999


Q ss_pred             CcEEEEECCCC--ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEccCC
Q psy6984          86 KTLRLWDLAAG--KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        86 ~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .++.||.-..+  +.+..+++|..+|.|++|+++|.+||++++|+.|=||.......+  ..+.+.|+..|..+.|+|..
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            99999986644  567889999999999999999999999999999999987644333  33557899999999999953


Q ss_pred             CCCEEEEEeCCCeEEEEeCC---CceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLT---NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                        .+|++++.|.+||+|+-.   ...+...+.+|...+++++|+|.|..|++++.|+.++||...+.-            
T Consensus       163 --dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------  228 (312)
T KOG0645|consen  163 --DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------  228 (312)
T ss_pred             --ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------
Confidence              489999999999999876   245677888999999999999999999999999999999753110            


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                           +                                  ..|..+++.+.|.  ...++|++.|+.|+++.-.....  
T Consensus       229 -----~----------------------------------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d--  265 (312)
T KOG0645|consen  229 -----S----------------------------------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD--  265 (312)
T ss_pred             -----c----------------------------------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC--
Confidence                 0                                  0122456677786  56799999999999996321100  


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecC-CCEEEEEeeCCeEEEEEee
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD-GQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~g~~dg~v~iw~~~  374 (380)
                           .      -..+.......+|...|.+++|+|. ...|++|+.||.|++|.+.
T Consensus       266 -----~------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  266 -----E------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             -----C------chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                 0      0011222345677788999999995 6678899999999999875

>KOG0315|consensus

Probab=100.00  E-value=1.2e-40  Score=255.89  Aligned_cols=279  Identities=25%  Similarity=0.409  Sum_probs=219.6

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccC
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHT  106 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~  106 (380)
                      +-+|+|+|.|.+||+|..........     ++-....|+.+.+.||++.||+++. ..|++||+++++  ++..+++|.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rT-----iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRT-----IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEE-----EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccC
Confidence            45899999999999998765443222     2222335999999999999999886 589999998765  578899999


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee
Q psy6984         107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK  186 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  186 (380)
                      +.|+++.|..+|+.+++|+.||+++|||++......  ...|..+|+++..+|+..  .|++|..+|.|++||+......
T Consensus        84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR--~~~~~spVn~vvlhpnQt--eLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR--NYQHNSPVNTVVLHPNQT--ELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             CceEEEEEeecCeEEEecCCCceEEEEeccCcccch--hccCCCCcceEEecCCcc--eEEeecCCCcEEEEEccCCccc
Confidence            999999999999999999999999999988733322  235668899999999754  5899999999999999876443


Q ss_pred             Ee-eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984         187 IN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI  265 (380)
Q Consensus       187 ~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (380)
                      .. .+.....|.++.+.|||.+++.+...|.+++|++...+....+                                  
T Consensus       160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l----------------------------------  205 (311)
T KOG0315|consen  160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL----------------------------------  205 (311)
T ss_pred             cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc----------------------------------
Confidence            32 2344568999999999999999999999999998663221111                                  


Q ss_pred             EEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCC
Q psy6984         266 LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPP  345 (380)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (380)
                             +....+..|.+.+..+.+|||+++|+++|.|.+++||+...-.+           ++        .....+..
T Consensus       206 -------~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-----------le--------~~l~gh~r  259 (311)
T KOG0315|consen  206 -------EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-----------LE--------LVLTGHQR  259 (311)
T ss_pred             -------eEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee-----------eE--------EEeecCCc
Confidence                   01122345556788899999999999999999999998643211           10        11245667


Q ss_pred             ceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984         346 MCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       346 ~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~  377 (380)
                      ++.+++||.||++|+||+.|+.+++|+++...
T Consensus       260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             eEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            89999999999999999999999999997654

>KOG0318|consensus

Probab=100.00  E-value=9.3e-39  Score=269.51  Aligned_cols=339  Identities=22%  Similarity=0.354  Sum_probs=268.9

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      +-.++..+++.|..-|+++.++|+ +++|+|++.||++.+||-...+....  ...-.+|++.|.++.|+||+++++|++
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~--l~~~~aHkGsIfalsWsPDs~~~~T~S  254 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGE--LEDSDAHKGSIFALSWSPDSTQFLTVS  254 (603)
T ss_pred             CCeeeeecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEE--ecCCCCccccEEEEEECCCCceEEEec
Confidence            345678899999999999999998 79999999999999999665433221  122458999999999999999999999


Q ss_pred             CCCcEEEEECCCCceee-------------------------------------------eecccCCCeEEEEEeCCCCE
Q psy6984          84 WDKTLRLWDLAAGKTTR-------------------------------------------RFEDHTKDVLSVAFSVDNRQ  120 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~-------------------------------------------~~~~h~~~v~~~~~~~~~~~  120 (380)
                      .|.+++|||+.++++.+                                           .+.+|.+.|++++.+||+.+
T Consensus       255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~  334 (603)
T KOG0318|consen  255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT  334 (603)
T ss_pred             CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence            99999999998764322                                           23589999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce----------------
Q psy6984         121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK----------------  184 (380)
Q Consensus       121 ~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----------------  184 (380)
                      |++|+.||.|.-|+...+........+|.+.|.+++....+   .+++.++|.++++.++....                
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~---~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~l  411 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG---ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGL  411 (603)
T ss_pred             EEeeccCceEEEEecCCccccccccccccceEEEEeecCCC---cEEEEecCCeEEEEecccCcccccceeecCCCceeE
Confidence            99999999999999877766666667899999999887643   48999999999999774210                


Q ss_pred             --------e-------eEeeeCC--------ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE---EEEEecCceE
Q psy6984         185 --------L-------KINHSGH--------TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL---HTLVHNDIIT  238 (380)
Q Consensus       185 --------~-------~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~i~  238 (380)
                              .       +..++.+        .-...+++++|++..++.|++|+.+++|.+......   ....|.++++
T Consensus       412 av~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  412 AVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT  491 (603)
T ss_pred             EEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCce
Confidence                    0       0001111        124567899999999999999999999998765533   4456899999


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec-cccceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS-LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                      .+++||++.|.+..-      ....+.+|+....++...... |...|.+++|+|++..+|||+-|-.|.+|++..+.+.
T Consensus       492 ~vaySpd~~yla~~D------a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGD------ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             EEEECCCCcEEEEec------cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence            999999998754332      345678899988877654444 7788999999999999999999999999987543322


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                                         .....+|...+..+.|- |...|++.+.|..|++|+++
T Consensus       566 -------------------i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  566 -------------------IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             -------------------eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence                               11234566668899995 66678888899999999986

>KOG0291|consensus

Probab=100.00  E-value=2.4e-37  Score=271.34  Aligned_cols=337  Identities=20%  Similarity=0.343  Sum_probs=270.1

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .+..++.||...|++|.|+.+ .++|++||.|.++|+|.++..+.   .....+.+|.++|..+.|..+...+++.+.||
T Consensus       136 vl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG  211 (893)
T KOG0291|consen  136 VLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVSKDG  211 (893)
T ss_pred             eEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEecCc
Confidence            477888999999999999987 68999999999999999876543   23455789999999999999999999999999


Q ss_pred             cEEEEECCC-----------------------Cce-e----------eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy6984          87 TLRLWDLAA-----------------------GKT-T----------RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKL  132 (380)
Q Consensus        87 ~i~vwd~~~-----------------------~~~-~----------~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~i  132 (380)
                      .+.+|....                       ++. .          .-+......+++.+|++....+++|-..|...+
T Consensus       212 ~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~L  291 (893)
T KOG0291|consen  212 ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGL  291 (893)
T ss_pred             eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEE
Confidence            999998761                       100 0          001122245777777777667777776666666


Q ss_pred             EeCCCc------------------------------------------ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984         133 WNTLAH------------------------------------------CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus       133 wd~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      |++..-                                          .......++|...+.|++++|+++  +++||+
T Consensus       292 yelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq--~iaTG~  369 (893)
T KOG0291|consen  292 YELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ--LIATGA  369 (893)
T ss_pred             EecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc--EEEecc
Confidence            653111                                          112234468999999999999986  799999


Q ss_pred             CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE--EEeecCccc
Q psy6984         171 WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA--LCFSPNRSF  248 (380)
Q Consensus       171 ~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~--~~~~~~~~~  248 (380)
                      .||.||+||...+-+...+..|+..++.+.|+..|+.+++++.||+|+.||+...+..+++..+.++..  ++..|.+..
T Consensus       370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel  449 (893)
T KOG0291|consen  370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL  449 (893)
T ss_pred             CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999987777654  444454543


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV  328 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  328 (380)
                      .     .+.......+.+|++.+|++...+.+|.++|.+++|+|++..|+|+|-|.+||+|++....          ..+
T Consensus       450 V-----~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----------~~v  514 (893)
T KOG0291|consen  450 V-----CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----------GTV  514 (893)
T ss_pred             E-----EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC----------cee
Confidence            2     2334456789999999999999999999999999999999999999999999999975321          122


Q ss_pred             EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         329 EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++++          ....++.++|+|||+-|+++.-||.|.+||+.
T Consensus       515 Etl~----------i~sdvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  515 ETLE----------IRSDVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             eeEe----------eccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence            2222          12246789999999999999999999999974

>KOG0284|consensus

Probab=100.00  E-value=2e-40  Score=271.41  Aligned_cols=285  Identities=22%  Similarity=0.364  Sum_probs=235.7

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .-...|+.+.|.|+ +..|++|+..|.+.+|+...-  ++   ...++.|...|.++.|++++.++++|+.+|.|++|+.
T Consensus        94 Kvkc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~f--nF---EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp  167 (464)
T KOG0284|consen   94 KVKCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSF--NF---ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP  167 (464)
T ss_pred             ccccceeeEEEcCC-CceeEeecccccEEEecCcee--eH---HHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence            33468999999998 789999999999999986321  11   2246799999999999999999999999999999998


Q ss_pred             CCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          94 AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        94 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      +-+........|..+|++++|+|....|+++|.||+|+|||....+....+ .+|.-.|.|+.|+|.  ..++++++.|.
T Consensus       168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~--kgLiasgskDn  244 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPT--KGLIASGSKDN  244 (464)
T ss_pred             chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCc--cceeEEccCCc
Confidence            766555555556699999999999999999999999999997655444444 588888999999996  44899999999


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeee
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKL  253 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  253 (380)
                      .|++||.+++.++....+|...|..+.|+|++++|+++|.|..++++|+++-+.+                         
T Consensus       245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-------------------------  299 (464)
T KOG0284|consen  245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-------------------------  299 (464)
T ss_pred             eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH-------------------------
Confidence            9999999999999999999999999999999999999999999999998743322                         


Q ss_pred             eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeec-CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeC
Q psy6984         254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELR  332 (380)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  332 (380)
                                            ..+.+|..+++++.|+|- ...|.+|+.||.|..|......           .     
T Consensus       300 ----------------------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-----------p-----  341 (464)
T KOG0284|consen  300 ----------------------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE-----------P-----  341 (464)
T ss_pred             ----------------------HHhhcchhhheeeccccccccceeeccCCCceEEEeccccc-----------c-----
Confidence                                  123345567778888884 4678889999999999752100           0     


Q ss_pred             cccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         333 PDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                         ......+|...|++++|+|=|.+|++|+.|.++++|.=
T Consensus       342 ---~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  342 ---LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ---ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence               11234678888999999999999999999999999953

>KOG0291|consensus

Probab=100.00  E-value=4.1e-38  Score=276.11  Aligned_cols=316  Identities=25%  Similarity=0.427  Sum_probs=252.0

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEe-eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSC-SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~-~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      +..++++.|.--...|..++++.. ++.||-| +.-|.+.||+...+.  |-+   ..++|-..+++++++|||+++|||
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~t-GDWiA~g~~klgQLlVweWqsEs--YVl---KQQgH~~~i~~l~YSpDgq~iaTG  368 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNST-GDWIAFGCSKLGQLLVWEWQSES--YVL---KQQGHSDRITSLAYSPDGQLIATG  368 (893)
T ss_pred             CCceEEEEeecccceeeEEEeccc-CCEEEEcCCccceEEEEEeeccc--eee---eccccccceeeEEECCCCcEEEec
Confidence            456788888877789999999977 5666654 566899999986543  222   247999999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      +.||.|+|||...+-+..++..|+..|+.+.|+..++.++++|-||+|+.||+.....+............|++..|.+.
T Consensus       369 ~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe  448 (893)
T KOG0291|consen  369 AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE  448 (893)
T ss_pred             cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999999999998777666665555556678999888653


Q ss_pred             CCEEEEEeCCC-eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-EEEEEEecCceEEE
Q psy6984         163 NPIIVSAGWDR-MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK-HLHTLVHNDIITAL  240 (380)
Q Consensus       163 ~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~  240 (380)
                        ++..|+.|. .|.+|++.++++.-.+.||.++|.+++|+|.+..|++++-|.+|++||+-... ....+         
T Consensus       449 --lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---------  517 (893)
T KOG0291|consen  449 --LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---------  517 (893)
T ss_pred             --EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE---------
Confidence              666677664 59999999999999999999999999999999999999999999999973321 11111         


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEe
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  320 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  320 (380)
                                                             .+...++.++|+|+|+.|+.+.-||.|.+||.....+...+
T Consensus       518 ---------------------------------------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  518 ---------------------------------------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             ---------------------------------------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence                                                   12345778999999999999999999999999877766554


Q ss_pred             ecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         321 DLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +......-.+...+..+....+......++++|+||..|++|+..+.|+||++..
T Consensus       559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence            4332211111112222222223345677999999999999999999999999863

>KOG0285|consensus

Probab=100.00  E-value=1.2e-38  Score=256.92  Aligned_cols=297  Identities=25%  Similarity=0.490  Sum_probs=245.2

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      +++...+.||.++|.++++.|- .+.|+||+.|+++++||+....     ....++||...|..+++++--.||++++.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~-----LkltltGhi~~vr~vavS~rHpYlFs~ged  214 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQ-----LKLTLTGHIETVRGVAVSKRHPYLFSAGED  214 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCe-----EEEeecchhheeeeeeecccCceEEEecCC
Confidence            5688899999999999999997 6899999999999999987643     234678999999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      +.|+.||+..++.++.+-+|-..|.|++.+|.-..+++|++|.++++||+++......+ .+|...|..+.+.|..  +.
T Consensus       215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~d--pq  291 (460)
T KOG0285|consen  215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTD--PQ  291 (460)
T ss_pred             CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCC--Cc
Confidence            99999999999999999999999999999999999999999999999999887665444 5899999999998754  45


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeec
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP  244 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~  244 (380)
                      +++|+.|++|++||++.++-......|...+.+++.+|....||+++.| .|+-|++..+..+..+. +.+.        
T Consensus       292 vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~i--------  362 (460)
T KOG0285|consen  292 VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAI--------  362 (460)
T ss_pred             eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccce--------
Confidence            9999999999999999998888888899999999999999999999998 58889887765443321 1222        


Q ss_pred             CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeeccc
Q psy6984         245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLET  324 (380)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~  324 (380)
                                                              +.+++... ..++++|+..|.+.+||...+........  
T Consensus       363 ----------------------------------------intl~~ns-D~v~~~G~dng~~~fwdwksg~nyQ~~~t--  399 (460)
T KOG0285|consen  363 ----------------------------------------INTLSVNS-DGVLVSGGDNGSIMFWDWKSGHNYQRGQT--  399 (460)
T ss_pred             ----------------------------------------eeeeeecc-CceEEEcCCceEEEEEecCcCcccccccc--
Confidence                                                    23333333 35788999999999999877655432211  


Q ss_pred             ceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         325 KKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                           ..++..     -.....|++.+|...|..|++|..|.+|++|.=
T Consensus       400 -----~vqpGS-----l~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  400 -----IVQPGS-----LESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             -----cccCCc-----cccccceeEEeecccCceEEeccCCcceEEEec
Confidence                 011111     123345788999999999999999999999964

>KOG0296|consensus

Probab=100.00  E-value=7.2e-37  Score=247.28  Aligned_cols=332  Identities=15%  Similarity=0.246  Sum_probs=269.1

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ..+|.+|.+.|.+++.+|+ .++++||+.|....+|+......     ...+.+|++.|+++.|+.||.+||||+.+|.|
T Consensus        57 ~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge~-----~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGEF-----AGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             eeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEccCCcc-----eeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            3578999999999999996 68999999999999999876542     34578999999999999999999999999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      +||...++....++......+.-+.|+|-+..|+.|+.||.+-+|.+..+ ....+..+|...++|=.|.|+++  .+++
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGK--r~~t  207 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGK--RILT  207 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCc--eEEE
Confidence            99999999888888666677889999999999999999999999998775 34445568999999999999865  5899


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE---------ecCceE
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV---------HNDIIT  238 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~i~  238 (380)
                      +..||+|++||++++........ ......++.++..+..++.|+.++.+++-+..+++.+....         +.+.+.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            99999999999999887665542 23356788899999999999999999999988888765543         233444


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                      ++.+.|......+   .+...-++.+.+|++.+.+.. ....|...|+.+.|-+ ..+|++++.||.|+.||..++..  
T Consensus       288 sve~~~~ss~lpL---~A~G~vdG~i~iyD~a~~~~R-~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l--  360 (399)
T KOG0296|consen  288 SVESIPSSSKLPL---AACGSVDGTIAIYDLAASTLR-HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL--  360 (399)
T ss_pred             hhhhcccccccch---hhcccccceEEEEecccchhh-eeccCCCceEEEEEcC-cchheeeccCceEEeeeccccce--
Confidence            5555443221110   223445788999999876654 3456777899999998 78999999999999998755432  


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                               ....         ..|...|++++.+|++++++|+|.|+..+||++.
T Consensus       361 ---------~~~y---------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  361 ---------KFTY---------TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ---------EEEE---------ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence                     2222         3466678999999999999999999999999874

>KOG0295|consensus

Probab=100.00  E-value=6.1e-38  Score=253.33  Aligned_cols=292  Identities=28%  Similarity=0.477  Sum_probs=246.2

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      .+++.+.+.||...|+.+.++|. -..+++++.|++|++||......     ...++||.+.|.++.|+..|++|++++.
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~-----e~~LrGHt~sv~di~~~a~Gk~l~tcSs  170 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGEL-----ERSLRGHTDSVFDISFDASGKYLATCSS  170 (406)
T ss_pred             CCCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhh-----hhhhhccccceeEEEEecCccEEEecCC
Confidence            45677888999999999999998 46899999999999999765432     4568999999999999999999999999


Q ss_pred             CCcEEEEECCC-CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          85 DKTLRLWDLAA-GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        85 d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      |-.+++||..+ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|+..++...... .+|.++|.-++.+.++. 
T Consensus       171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGt-  248 (406)
T KOG0295|consen  171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGT-  248 (406)
T ss_pred             ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCee-
Confidence            99999999976 4566777889999999999999999999999999999998877665444 58999999999887654 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC---------------CCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD---------------GSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                       ++++++.|.+|++|-+.+......+.+|.-+|.+++|.|.               +.++.+++.|+.|++||+.++..+
T Consensus       249 -i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL  327 (406)
T KOG0295|consen  249 -IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL  327 (406)
T ss_pred             -EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence             8899999999999999988777778889999999998653               258889999999999999888665


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      .++                                               .+|..-|..++|+|.|+||+|+..|+++++
T Consensus       328 ~tL-----------------------------------------------~ghdnwVr~~af~p~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  328 FTL-----------------------------------------------VGHDNWVRGVAFSPGGKYILSCADDKTLRV  360 (406)
T ss_pred             EEE-----------------------------------------------ecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence            444                                               234455778889999999999999999999


Q ss_pred             EecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         309 WNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       309 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ||+....           ....         .++|+..|.++.|..+-.++++|+-|..+++|.
T Consensus       361 wdl~~~~-----------cmk~---------~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  361 WDLKNLQ-----------CMKT---------LEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEeccce-----------eeec---------cCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            9864332           2221         235666788999999999999999999999995

>KOG0286|consensus

Probab=100.00  E-value=4.8e-37  Score=241.39  Aligned_cols=253  Identities=27%  Similarity=0.424  Sum_probs=218.8

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..++||.+.|.++.|++|+++|++++.||.+.|||.-+.+....++--..-|..++|+|.|+++|.|+-|+...||++..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~  128 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST  128 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence            46899999999999999999999999999999999988877777766667799999999999999999999999999764


Q ss_pred             c--c---eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC-CCCEEEEE
Q psy6984         138 H--C---KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASG  211 (380)
Q Consensus       138 ~--~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  211 (380)
                      .  .   .......+|+..+.|..|..+.   .|+|++.|.+..+||+++++....+.+|.+.|.+++++| +++.+++|
T Consensus       129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~---~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg  205 (343)
T KOG0286|consen  129 RDAEGNVRVSRELAGHTGYLSCCRFLDDN---HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG  205 (343)
T ss_pred             ccccccceeeeeecCccceeEEEEEcCCC---ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence            3  1   2233346899999999998754   589999999999999999999999999999999999999 99999999


Q ss_pred             cCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEe
Q psy6984         212 GKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFS  291 (380)
Q Consensus       212 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  291 (380)
                      +-|+..++||++.+...+.                                               |++|..+|.+++|.
T Consensus       206 ~cD~~aklWD~R~~~c~qt-----------------------------------------------F~ghesDINsv~ff  238 (343)
T KOG0286|consen  206 GCDKSAKLWDVRSGQCVQT-----------------------------------------------FEGHESDINSVRFF  238 (343)
T ss_pred             ccccceeeeeccCcceeEe-----------------------------------------------ecccccccceEEEc
Confidence            9999999999998765443                                               34566778889999


Q ss_pred             ecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEE
Q psy6984         292 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW  371 (380)
Q Consensus       292 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw  371 (380)
                      |+|.-|++|+.|++.|+||+...+++.++..+.                  ....+.+++||..|++|++|..|..+.+|
T Consensus       239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~------------------~~~gitSv~FS~SGRlLfagy~d~~c~vW  300 (343)
T KOG0286|consen  239 PSGDAFATGSDDATCRLYDLRADQELAVYSHDS------------------IICGITSVAFSKSGRLLFAGYDDFTCNVW  300 (343)
T ss_pred             cCCCeeeecCCCceeEEEeecCCcEEeeeccCc------------------ccCCceeEEEcccccEEEeeecCCceeEe
Confidence            999999999999999999998887777664221                  12347899999999999999999999999


Q ss_pred             Eeeeecc
Q psy6984         372 QVSVTSR  378 (380)
Q Consensus       372 ~~~~~~~  378 (380)
                      |.-+.++
T Consensus       301 Dtlk~e~  307 (343)
T KOG0286|consen  301 DTLKGER  307 (343)
T ss_pred             eccccce
Confidence            9865544

>KOG0265|consensus

Probab=100.00  E-value=1.6e-37  Score=244.91  Aligned_cols=284  Identities=27%  Similarity=0.381  Sum_probs=238.5

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      -.+.||++.|+.+.|+|+ +.+||||+.|..|.+|++..+..++..    +++|.+.|..+.|.+|++.+++++.|..|+
T Consensus        41 m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~----lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWV----LKGHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             hhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceee----eccccceeEeeeeccCCCEEEEecCCceEE
Confidence            357899999999999996 789999999999999998877666543    579999999999999999999999999999


Q ss_pred             EEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      .||+++|+..++++.|..-|..+.-+.-|. .+.+++.|+++++||++++......+  ....+.++.|.....  .+++
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~--qv~s  191 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSD--QVIS  191 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEeccccc--ceee
Confidence            999999999999999999888887544444 56689999999999998765544332  234578888887655  4889


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc----EEEEEE---ec--CceEE
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK----HLHTLV---HN--DIITA  239 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~---~~--~~i~~  239 (380)
                      |+-|+.|++||++.........||...|+.+..+|+|.++.+-+.|..+++||++...    .+..+.   |.  ...-.
T Consensus       192 ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~  271 (338)
T KOG0265|consen  192 GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK  271 (338)
T ss_pred             ccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence            9999999999999999999999999999999999999999999999999999987532    233332   22  22345


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      .+|+|+..+..      ....+..+++|+.........+.+|.+.|..++|+|....+.+++.|.+|++
T Consensus       272 cswsp~~~~i~------ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  272 CSWSPNGTKIT------AGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             eeccCCCCccc------cccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            66888766532      2345677899999888888899999999999999999999999999999876

>KOG0263|consensus

Probab=100.00  E-value=1.1e-37  Score=275.20  Aligned_cols=254  Identities=26%  Similarity=0.418  Sum_probs=216.8

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC---------C--C---------------cccccccccCCC
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD---------T--N---------------YGVPQKRLKGHS   64 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~---------~--~---------------~~~~~~~~~~h~   64 (380)
                      ++..-...++|..++++ ...||.|-.|..|++|.+....         .  .               .......+.||.
T Consensus       373 T~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            34334567999999988 5688888899999999987311         0  0               001123478999


Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      ++|..+.|+|+.++|++++.|+++++|.+.+...+..+++|..+|.++.|+|-|-+|||+|.|++.++|......... +
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR-i  530 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR-I  530 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999999865543333 3


Q ss_pred             eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         145 EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      ..+|-..|.|+.|+|+..  ++++|+.|.+||+||..++..+..+.||.++|.+++|+|+|++|++|+.|+.|.+||+.+
T Consensus       531 faghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             hcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            458888899999999754  899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                      ++.+..                                               +.+|.+.|.++.||.+|..||+|+.|.
T Consensus       609 ~~~v~~-----------------------------------------------l~~Ht~ti~SlsFS~dg~vLasgg~Dn  641 (707)
T KOG0263|consen  609 GSLVKQ-----------------------------------------------LKGHTGTIYSLSFSRDGNVLASGGADN  641 (707)
T ss_pred             Ccchhh-----------------------------------------------hhcccCceeEEEEecCCCEEEecCCCC
Confidence            765433                                               334456678899999999999999999


Q ss_pred             cEEEEecccce
Q psy6984         305 TIKLWNTLAHC  315 (380)
Q Consensus       305 ~v~iw~~~~~~  315 (380)
                      +|++||+....
T Consensus       642 sV~lWD~~~~~  652 (707)
T KOG0263|consen  642 SVRLWDLTKVI  652 (707)
T ss_pred             eEEEEEchhhc
Confidence            99999976543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.8e-36  Score=287.96  Aligned_cols=309  Identities=19%  Similarity=0.264  Sum_probs=231.6

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC---cccccccccCCCcceEEEEEcc-CCCEEEEEeCCC
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN---YGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDK   86 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~   86 (380)
                      .+.+|.+.|++++|+|+ +++|++|+.|++|++|++......   ...+...+. +...+.+++|++ ++++|++++.||
T Consensus       478 ~~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence            35569999999999997 689999999999999997532100   001111222 345788999987 578999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      .|++||+.+++.+..+..|.+.|.+++|+| ++.+|++|+.|+.|++||+........+. .+ ..+.++.|.+.. ..+
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~-~~v~~v~~~~~~-g~~  632 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TK-ANICCVQFPSES-GRS  632 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cC-CCeEEEEEeCCC-CCE
Confidence            999999999999999999999999999996 78899999999999999987765554443 23 468899996542 347


Q ss_pred             EEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeec
Q psy6984         166 IVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSP  244 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~  244 (380)
                      |++|+.|+.|++||+++.+ ......+|...|.++.|. ++.++++++.|+.|++||+..+...               .
T Consensus       633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~---------------~  696 (793)
T PLN00181        633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG---------------I  696 (793)
T ss_pred             EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc---------------c
Confidence            9999999999999998765 345567899999999997 6889999999999999998643100               0


Q ss_pred             CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeeccc
Q psy6984         245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLET  324 (380)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~  324 (380)
                                                ..+....+.+|...+.+++|+|++++|++|+.|+.|++|+......+..+....
T Consensus       697 --------------------------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~  750 (793)
T PLN00181        697 --------------------------NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT  750 (793)
T ss_pred             --------------------------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence                                      000011223444567789999999999999999999999864432221111111


Q ss_pred             ceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         325 KKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      ...+.       ......+...|.+++|+|++.+|++|+.||.|+||++
T Consensus       751 ~~~~~-------~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        751 IDPVS-------GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCccc-------ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            10000       0011234557899999999999999999999999986

>KOG0319|consensus

Probab=100.00  E-value=3e-37  Score=270.19  Aligned_cols=339  Identities=24%  Similarity=0.411  Sum_probs=267.2

Q ss_pred             eeeEEeEEecC-cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC--EEE
Q psy6984           4 ETLQLRGTLNG-HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN--YAL   80 (380)
Q Consensus         4 ~~~~~~~~~~~-h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~   80 (380)
                      ++.+++..+.. |+++|-.++++|. +.++++|+.||.++|||+....     ....++||.+.|..+.|+|+-+  .|+
T Consensus        92 ~tgk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~-----~th~fkG~gGvVssl~F~~~~~~~lL~  165 (775)
T KOG0319|consen   92 PTGKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGY-----CTHSFKGHGGVVSSLLFHPHWNRWLLA  165 (775)
T ss_pred             ccchHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEeeCCE-----EEEEecCCCceEEEEEeCCccchhhee
Confidence            44456666676 9999999999998 5899999999999999987543     2456899999999999999765  489


Q ss_pred             EEeCCCcEEEEECCCCce-eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-------------------
Q psy6984          81 SGSWDKTLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-------------------  140 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-------------------  140 (380)
                      +|..|+.+++||+.+... +..+..|...|++++|++|+..++++++|..+.+||+.....                   
T Consensus       166 sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~  245 (775)
T KOG0319|consen  166 SGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREE  245 (775)
T ss_pred             ecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechh
Confidence            999999999999986555 777889999999999999999999999999999998411000                   


Q ss_pred             ------EE------------------------------------------------------------------------
Q psy6984         141 ------FT------------------------------------------------------------------------  142 (380)
Q Consensus       141 ------~~------------------------------------------------------------------------  142 (380)
                            ..                                                                        
T Consensus       246 ~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE  325 (775)
T KOG0319|consen  246 LGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE  325 (775)
T ss_pred             cCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence                  00                                                                        


Q ss_pred             ---------------------------------EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce----e
Q psy6984         143 ---------------------------------IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK----L  185 (380)
Q Consensus       143 ---------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----~  185 (380)
                                                       .+..+|++.|.++....  ++.+|+||+.|.++++|.+++..    +
T Consensus       326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~  403 (775)
T KOG0319|consen  326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLC  403 (775)
T ss_pred             heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc--cCcEEEEecCCceEEEEEecCCcchhhh
Confidence                                             00024444444444222  22478999999999999884321    2


Q ss_pred             eEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE----EE------EEEecCceEEEEeecCcccceeeee
Q psy6984         186 KINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKH----LH------TLVHNDIITALCFSPNRSFQKIKLD  254 (380)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~----~~------~~~~~~~i~~~~~~~~~~~~~~~~~  254 (380)
                      .....+|...|.+++++..+ .+|+++|.|.++++|++...+.    +.      ...|...|++++.+|+.+.      
T Consensus       404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL------  477 (775)
T KOG0319|consen  404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL------  477 (775)
T ss_pred             hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce------
Confidence            33456899999999997655 4789999999999999876221    11      1247888999999998765      


Q ss_pred             eeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcc
Q psy6984         255 ISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPD  334 (380)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  334 (380)
                      ++....+....+|.+........+.+|...++++.|+|..+.|+|+|.|++|+||.+.           +..++.++   
T Consensus       478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is-----------~fSClkT~---  543 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS-----------TFSCLKTF---  543 (775)
T ss_pred             EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec-----------cceeeeee---
Confidence            3445577888999999999999999999999999999999999999999999999764           33444333   


Q ss_pred             cccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         335 VVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                            ..|...|..+.|-.+|+.|+++++||.+++|++.+.
T Consensus       544 ------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  544 ------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             ------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence                  334556788999999999999999999999998653

>KOG0279|consensus

Probab=100.00  E-value=1.1e-36  Score=237.84  Aligned_cols=259  Identities=28%  Similarity=0.422  Sum_probs=207.7

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      +.......|.||+-.|+.+..+++ +++++++|.|+++|+||+....     +..++.||...|.+++|++|.+++++|+
T Consensus        51 ~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~-----~t~~f~GH~~dVlsva~s~dn~qivSGS  124 (315)
T KOG0279|consen   51 KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGE-----STRRFVGHTKDVLSVAFSTDNRQIVSGS  124 (315)
T ss_pred             ccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEecCCc-----EEEEEEecCCceEEEEecCCCceeecCC
Confidence            334567889999999999999998 7999999999999999987542     3456889999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeecc-cCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFED-HTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      .|.+|++|+...+........ +.+-|.|+.|+|+  ...+++++.|++|++||+.+.+ ......+|+..++.+.++|+
T Consensus       125 rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpD  203 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPD  203 (315)
T ss_pred             CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCC
Confidence            999999999876544443333 3778999999998  6789999999999999976543 33444589999999999998


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL  240 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~  240 (380)
                      +.  ++++|+.||.+.+||++..+.. ...+|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+..+..-.+.
T Consensus       204 Gs--lcasGgkdg~~~LwdL~~~k~l-ysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~  279 (315)
T KOG0279|consen  204 GS--LCASGGKDGEAMLWDLNEGKNL-YSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSS  279 (315)
T ss_pred             CC--EEecCCCCceEEEEEccCCcee-EeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccccc
Confidence            75  7899999999999999988774 445688899999999987666655 4456999999998877655422111000


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                                         ..+                   ...-.+++|++||..|++|..|+.|++|.+
T Consensus       280 -------------------~~~-------------------~~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  280 -------------------KAG-------------------DPICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             -------------------ccC-------------------CcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence                               000                   011347899999999999999999999964

>KOG0319|consensus

Probab=100.00  E-value=2.1e-36  Score=264.91  Aligned_cols=339  Identities=24%  Similarity=0.371  Sum_probs=273.2

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCC-CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      .+...+.+.|.||.|.|.++.|+|.. ...|++|..|+++++||+.....    ....++.|...|+++.|++|+.-+++
T Consensus       134 i~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  134 IKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILHKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             eeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhhhhheeeeeeccCCceEEE
Confidence            34567889999999999999999972 35689999999999999874432    23456789999999999999988999


Q ss_pred             EeCCCcEEEEECCCCc-----------------------------------------------------e----------
Q psy6984          82 GSWDKTLRLWDLAAGK-----------------------------------------------------T----------   98 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~-----------------------------------------------------~----------   98 (380)
                      ++.|..|.|||+..-+                                                     .          
T Consensus       210 ~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~  289 (775)
T KOG0319|consen  210 VGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA  289 (775)
T ss_pred             eccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence            9999888898863210                                                     0          


Q ss_pred             --------------------------------------------------------------------eeeecccCCCeE
Q psy6984          99 --------------------------------------------------------------------TRRFEDHTKDVL  110 (380)
Q Consensus        99 --------------------------------------------------------------------~~~~~~h~~~v~  110 (380)
                                                                                          -+.+.+|...|.
T Consensus       290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vl  369 (775)
T KOG0319|consen  290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVL  369 (775)
T ss_pred             ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhhee
Confidence                                                                                001346777888


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCCcceE---EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee--
Q psy6984         111 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF---TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL--  185 (380)
Q Consensus       111 ~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--  185 (380)
                      ++....+|.+++|++.|+++++|.+...+..   .....+|+..|.+++++..+ ..+|++++.|+++++|++...+.  
T Consensus       370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~~~~  448 (775)
T KOG0319|consen  370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSKETA  448 (775)
T ss_pred             eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC-ccEEEEecCCceEEEecCCCccccc
Confidence            8886667889999999999999976433222   22346899999999997654 46899999999999999976211  


Q ss_pred             ---e----EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeee
Q psy6984         186 ---K----INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISR  257 (380)
Q Consensus       186 ---~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~  257 (380)
                         .    .....|...|++++++|+.+++||||+|.+.++|+++.......+. |.-.+-++.|+|..+.      .+.
T Consensus       449 ~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~------laT  522 (775)
T KOG0319|consen  449 FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL------LAT  522 (775)
T ss_pred             ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce------eEe
Confidence               1    1234688999999999999999999999999999999888777774 7888999999997654      334


Q ss_pred             eccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCccccc
Q psy6984         258 TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVS  337 (380)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (380)
                      ...+..+.+|.+.+......+.+|...|..+.|-.+++.|+||+.||-+++|++.++.-..                   
T Consensus       523 ~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~-------------------  583 (775)
T KOG0319|consen  523 CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM-------------------  583 (775)
T ss_pred             ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh-------------------
Confidence            4568889999999999999999999999999999999999999999999999875432221                   


Q ss_pred             ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         338 QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       338 ~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                       ....|...|++++-+|.+.+++||+.||.|.+|.
T Consensus       584 -tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  584 -TLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             -hhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence             2245677788999999999999999999999995

>KOG0263|consensus

Probab=100.00  E-value=5.1e-37  Score=271.07  Aligned_cols=242  Identities=28%  Similarity=0.478  Sum_probs=208.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCc-------------------------------eeeeecccCCCeEEEE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-------------------------------TTRRFEDHTKDVLSVA  113 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-------------------------------~~~~~~~h~~~v~~~~  113 (380)
                      ..++|+.|++|++.||.|-.|..|++|.+...+                               ..+++-+|.++|...+
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s  458 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS  458 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence            357899999999999999999999999987421                               1234678999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCc
Q psy6984         114 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT  193 (380)
Q Consensus       114 ~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  193 (380)
                      |+|+.++|+++|.|+++|+|.+.+...... ..+|..+|++++|+|.+  .+|+|++.|++-++|..........+.+|.
T Consensus       459 FsPd~rfLlScSED~svRLWsl~t~s~~V~-y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifaghl  535 (707)
T KOG0263|consen  459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVI-YKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFAGHL  535 (707)
T ss_pred             ecccccceeeccCCcceeeeecccceeEEE-ecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhcccc
Confidence            999999999999999999999888766554 45999999999999864  589999999999999998888888889999


Q ss_pred             cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984         194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK  273 (380)
Q Consensus       194 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (380)
                      ..+.|+.|+|+..|+++||.|.++++||+.+|..++.                                           
T Consensus       536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi-------------------------------------------  572 (707)
T KOG0263|consen  536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI-------------------------------------------  572 (707)
T ss_pred             cccceEEECCcccccccCCCCceEEEEEcCCCcEEEE-------------------------------------------
Confidence            9999999999999999999999999999988765432                                           


Q ss_pred             eeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEe
Q psy6984         274 METPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS  353 (380)
Q Consensus       274 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  353 (380)
                          |.+|.++|.+++|||+|++|++|+.||.|++||+..+.           ++..         ...|...+.++.||
T Consensus       573 ----F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-----------~v~~---------l~~Ht~ti~SlsFS  628 (707)
T KOG0263|consen  573 ----FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS-----------LVKQ---------LKGHTGTIYSLSFS  628 (707)
T ss_pred             ----ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-----------chhh---------hhcccCceeEEEEe
Confidence                23567789999999999999999999999999874432           2221         23356678999999


Q ss_pred             cCCCEEEEEeeCCeEEEEEeeee
Q psy6984         354 TDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       354 ~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      .||..||+|+.|+.|++||+..+
T Consensus       629 ~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  629 RDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999998654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-35  Score=250.97  Aligned_cols=287  Identities=38%  Similarity=0.630  Sum_probs=244.9

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ..++.+|.+.|+++.++|+ +++|++++.||.+++|++....     ....+..|...+..+.|+|+++++++++.|+.|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i   75 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTI   75 (289)
T ss_pred             chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence            3567899999999999998 6899999999999999986543     233456788889999999999999999999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ++||+.+++....+..|...+.++.|++++..+++++.|+.+.+||+......... ..|...+.++.++|++  .++++
T Consensus        76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~l~~  152 (289)
T cd00200          76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDG--TFVAS  152 (289)
T ss_pred             EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcC--CEEEE
Confidence            99999988888888899989999999999888888888999999998755444333 3678889999999973  36777


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRS  247 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~  247 (380)
                      ++.|+.|++||++..+....+..|...+.++.++|+++.+++++.|+.+++||+..++.+..+ .+...+..++|+|++.
T Consensus       153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  232 (289)
T cd00200         153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY  232 (289)
T ss_pred             EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence            777999999999987777777788889999999999999999999999999999988888877 6777899999999844


Q ss_pred             cceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         248 FQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      +...      ...++.+.+|+...++....+..+...+.+++|+|++++|++++.||.|++|+
T Consensus       233 ~~~~------~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         233 LLAS------GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEE------EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            3221      12467899999988877777777778899999999999999999999999995

>KOG0316|consensus

Probab=100.00  E-value=7e-36  Score=228.02  Aligned_cols=287  Identities=23%  Similarity=0.386  Sum_probs=227.8

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      ..+.|.+|.++|..+.++.+ +++.+||+.|.+||+|+..+.     ...+++.+|...|..++.+.|...+++++.|..
T Consensus         9 r~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             hceeecccccceEEEEEccC-CCEEEEcCCCceEEeeccccc-----ceeeeecCCCceeeeccccccccccccCCCCce
Confidence            45678999999999999998 799999999999999986543     245678899999999999999999999999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      +.+||+++|+..+++.+|.+.|..++|+.+...+++|+.|..+++||-+.... ..++.....+.|.++.++..    .+
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h----eI  158 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH----EI  158 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc----EE
Confidence            99999999999999999999999999999999999999999999999765322 22333345667888888643    58


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecC
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN  245 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~  245 (380)
                      ++|+.||++|.||++.+.+.....+|  +|+++.|+++++..+.++.|+.+++.|-.+|+.+.... |...         
T Consensus       159 vaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~---------  227 (307)
T KOG0316|consen  159 VAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM---------  227 (307)
T ss_pred             EeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc---------
Confidence            99999999999999998887666554  79999999999999999999999999999887654332 1100         


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK  325 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  325 (380)
                       .                                    --...+++.....+++|++||.|++||+....++..+..   
T Consensus       228 -e------------------------------------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~---  267 (307)
T KOG0316|consen  228 -E------------------------------------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV---  267 (307)
T ss_pred             -e------------------------------------eeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc---
Confidence             0                                    011345566677899999999999999865544332211   


Q ss_pred             eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                                      .....+.++.++|.-.-++++. ++.+..|.
T Consensus       268 ----------------~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~  297 (307)
T KOG0316|consen  268 ----------------VSTVIVTDLSCHPTMDDFITAT-GHGDLFWY  297 (307)
T ss_pred             ----------------CCceeEEeeecccCccceeEec-CCceecee
Confidence                            1122367889999877666654 44455553

>KOG0266|consensus

Probab=100.00  E-value=4.4e-35  Score=264.43  Aligned_cols=297  Identities=32%  Similarity=0.520  Sum_probs=237.6

Q ss_pred             eEEeEEecCc-ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           6 LQLRGTLNGH-NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         6 ~~~~~~~~~h-~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      +.+...+.+| ...|+++.++++ +..+++++.|+.+++|+......   .....+.+|...|++++|+|+++++++++.
T Consensus       148 ~~~~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  148 FSLEQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             ceeeeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCcEEEEecC
Confidence            3346667666 788999999998 67899999999999999743221   123445899999999999999999999999


Q ss_pred             CCcEEEEEC-CCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          85 DKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        85 d~~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      |+.|+|||+ ..+..++.+.+|...|++++|+|+++.+++|+.|++|++||+.++..... ..+|.+.|.+++|++++. 
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~-l~~hs~~is~~~f~~d~~-  301 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK-LKGHSDGISGLAFSPDGN-  301 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe-eeccCCceEEEEECCCCC-
Confidence            999999999 55688999999999999999999999999999999999999987555444 458999999999999765 


Q ss_pred             CEEEEEeCCCeEEEEeCCCce--eeEeeeCCcc--ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCK--LKINHSGHTG--YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIIT  238 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~  238 (380)
                       +|++++.|+.|++||+.++.  +.....++..  .++.+.|+|++.+++++..|+.+++||+..+....... |...+ 
T Consensus       302 -~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~-  379 (456)
T KOG0266|consen  302 -LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV-  379 (456)
T ss_pred             -EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc-
Confidence             78889999999999999988  3445555544  48999999999999999999999999998877654442 11100 


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                                                                  ..+.+..+++.++++++|+.|+.|++|+......+.
T Consensus       380 --------------------------------------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~  415 (456)
T KOG0266|consen  380 --------------------------------------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ  415 (456)
T ss_pred             --------------------------------------------eeEecccccCCCCeEEEEeCCceEEEEeCCccchhh
Confidence                                                        012233446789999999999999999865422211


Q ss_pred             EeecccceEEEeeCcccccccCCCC-CCceEEEEEecCCCEEEEEe--eCCeEEEEEee
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKAD-PPMCLSLAWSTDGQTLFAGY--SDNTIRVWQVS  374 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~g~--~dg~v~iw~~~  374 (380)
                      .                    ...| ...+..++|+|..+++++++  .|+.+++|...
T Consensus       416 ~--------------------l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  416 R--------------------LEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             h--------------------hcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            1                    1122 34567889999999999887  79999999754

>KOG0643|consensus

Probab=100.00  E-value=4.5e-36  Score=233.12  Aligned_cols=292  Identities=21%  Similarity=0.291  Sum_probs=232.2

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      -|.||+.+++.|.++.+ +++|++|++|.++.||--..     +.....+.||++.|+|+.++.+.+++++|+.|.++++
T Consensus         5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~n-----GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLN-----GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccCccccceEEecCC-CcEEEEecCCCCceEEEecC-----CceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            47899999999999987 79999999999999995321     2234568999999999999999999999999999999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcc------eEEEeeCCCcCcEEEEEEcc
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHC------KFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~  159 (380)
                      ||+.+|+.+..++. ..+|..+.|+++|++++....+     +.|.++|++...      ........+...++.+.|.|
T Consensus        79 WDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   79 WDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            99999999998764 5679999999999988776543     578899876321      11222234567888999998


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCcee-eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKL-KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      -+.  +|++|..||.|.+||++++.. +.....|...|+.+.++||..++++++.|.+-++||..+-+.++++....+++
T Consensus       158 l~~--~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN  235 (327)
T KOG0643|consen  158 LGE--TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVN  235 (327)
T ss_pred             cCC--EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccc
Confidence            654  799999999999999998744 44556789999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCcccceeee-----eeee---eccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         239 ALCFSPNRSFQKIKL-----DISR---TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      +.+++|-..+..+.-     ++..   ...+...+.|++.-.+......+|.++|.+++|+|+|+..+||++||.||+..
T Consensus       236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            999999644322211     0100   11112222233222333455678889999999999999999999999999985


Q ss_pred             c
Q psy6984         311 T  311 (380)
Q Consensus       311 ~  311 (380)
                      .
T Consensus       316 F  316 (327)
T KOG0643|consen  316 F  316 (327)
T ss_pred             e
Confidence            4

>KOG0293|consensus

Probab=100.00  E-value=3e-36  Score=247.32  Aligned_cols=291  Identities=19%  Similarity=0.330  Sum_probs=237.1

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd  134 (380)
                      +.+..|.+.|+-+.||++|+|||+++.|.+..+|++....   ...++.+|..+|.-+.|+||.+++++++.|..+.+||
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            3568999999999999999999999999999999886543   4778899999999999999999999999999999999


Q ss_pred             CCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         135 TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      ..++........++...+.+.+|.|++.  .+++|+.|+++..||+.......-..-....|.++++.+||+++++...|
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d  375 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD  375 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCc--eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence            9888777777667778899999999986  48999999999999998654322211123468999999999999999999


Q ss_pred             CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccc--eeEEEEee
Q psy6984         215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD--VLSVAFSV  292 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~  292 (380)
                      ..|++++.++.........+.+++++++|.++.+...      .+....+.+|++...+....+++|...  +..-+|--
T Consensus       376 ~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv------nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  376 KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV------NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             cceeeechhhhhhhccccccCceeEEEEcCCCcEEEE------EcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            9999999877655556667889999999999887543      345778999999988888888887655  33345543


Q ss_pred             -cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC-CEEEEEeeCCeEEE
Q psy6984         293 -DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG-QTLFAGYSDNTIRV  370 (380)
Q Consensus       293 -~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~g~~dg~v~i  370 (380)
                       +..+++|||+|+.|+||+...+           +.+..+         ..|...|.+|+|+|.. +++|+|+.||+|||
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~sg-----------kll~~L---------sGHs~~vNcVswNP~~p~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRISG-----------KLLAVL---------SGHSKTVNCVSWNPADPEMFASASDDGTIRI  509 (519)
T ss_pred             CCcceEEecCCCceEEEEEccCC-----------ceeEee---------cCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence             4588999999999999975433           333323         3456678999999965 57889999999999


Q ss_pred             EEeeee
Q psy6984         371 WQVSVT  376 (380)
Q Consensus       371 w~~~~~  376 (380)
                      |-....
T Consensus       510 Wg~~~~  515 (519)
T KOG0293|consen  510 WGPSDN  515 (519)
T ss_pred             ecCCcc
Confidence            987643

>KOG0315|consensus

Probab=100.00  E-value=1.7e-34  Score=222.14  Aligned_cols=263  Identities=21%  Similarity=0.367  Sum_probs=213.0

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      +..+..+++--.+-|+.++..|+ ...||+++. -.||+||+...+..   |...+.+|...|+.+.|..||+++++||.
T Consensus        29 tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~---Pv~t~e~h~kNVtaVgF~~dgrWMyTgse  103 (311)
T KOG0315|consen   29 TGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPN---PVATFEGHTKNVTAVGFQCDGRWMYTGSE  103 (311)
T ss_pred             cCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCC---ceeEEeccCCceEEEEEeecCeEEEecCC
Confidence            45567777666677999999998 567777775 59999999875432   56678999999999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      ||.++|||++.-...+.+ .|..+|.++..+|+...|+++..+|.|++||+................|.++.+.|++.  
T Consensus       104 Dgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs--  180 (311)
T KOG0315|consen  104 DGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS--  180 (311)
T ss_pred             CceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc--
Confidence            999999999985555555 46799999999999999999999999999998776443333334456799999999876  


Q ss_pred             EEEEEeCCCeEEEEeCCCc------eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         165 IIVSAGWDRMVKVWNLTNC------KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      .++.+...|...+|++-+.      +.+..++.|.+.+..+.+||++++||+++.|.+++||+.+..-.           
T Consensus       181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k-----------  249 (311)
T KOG0315|consen  181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK-----------  249 (311)
T ss_pred             EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee-----------
Confidence            6888888999999998653      33445778999999999999999999999999999999765310           


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                                                         .+..+.+|.+-+++.+||.||+||+||+.|+++++|+...+.++.
T Consensus       250 -----------------------------------le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  250 -----------------------------------LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             -----------------------------------eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence                                               112223444567889999999999999999999999987766655


Q ss_pred             Eee
Q psy6984         319 IVD  321 (380)
Q Consensus       319 ~~~  321 (380)
                      .++
T Consensus       295 qy~  297 (311)
T KOG0315|consen  295 QYQ  297 (311)
T ss_pred             ecC
Confidence            543

>KOG0273|consensus

Probab=100.00  E-value=2e-34  Score=240.35  Aligned_cols=278  Identities=23%  Similarity=0.383  Sum_probs=240.0

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      +..|++++|+.+ ++.||+|+.||.+|+|+.....      ...+..|+.+|.++.|+..|+||++++.|+.+.+||..+
T Consensus       235 nkdVT~L~Wn~~-G~~LatG~~~G~~riw~~~G~l------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  235 NKDVTSLDWNND-GTLLATGSEDGEARIWNKDGNL------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             cCCcceEEecCC-CCeEEEeecCcEEEEEecCchh------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence            367999999987 7899999999999999976432      345778999999999999999999999999999999999


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      +...+.+..|..+-.++.|-. ...+++.+.|+.|+++.+........+ .+|...|.++.|+|.+.  +|++++.|+++
T Consensus       308 g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~--LLaS~SdD~Tl  383 (524)
T KOG0273|consen  308 GTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGS--LLASCSDDGTL  383 (524)
T ss_pred             ceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCc--eEEEecCCCee
Confidence            999999999988878888864 457899999999999986554443333 46999999999999654  89999999999


Q ss_pred             EEEeCCCceeeEeeeCCccceEEEEEcCCCC---------EEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecC
Q psy6984         176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGS---------LCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN  245 (380)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~  245 (380)
                      +||.+........+.+|...|..+.|+|.|.         .+++++.|..+++||+..+.+++.+ .|.++|.+++|+|+
T Consensus       384 kiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~  463 (524)
T KOG0273|consen  384 KIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN  463 (524)
T ss_pred             EeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence            9999988877778889999999999998753         6899999999999999999999998 89999999999999


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      +.+.+      ....++.+.+|++..++......+ ...|..++|+.+|..|..+-.|+.+.+-|+
T Consensus       464 g~ylA------sGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  464 GRYLA------SGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             CcEEE------ecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            98744      344578899999999987665433 345899999999999999999999988764

>KOG0282|consensus

Probab=100.00  E-value=2e-36  Score=253.07  Aligned_cols=285  Identities=22%  Similarity=0.411  Sum_probs=230.6

Q ss_pred             cccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCC-CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984          59 RLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  136 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~  136 (380)
                      .+.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+.+|..+++++.|+.+++||+.
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE  288 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE  288 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc
Confidence            5689999999999999 899999999999999999976 88999999999999999999999999999999999999999


Q ss_pred             CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      ++........+  ..+.|+.|+|+++ ..|++|+.|+.|+.||+++++.+..+..|.+.|..+.|-++|+.+++.+.|+.
T Consensus       289 TG~~~~~f~~~--~~~~cvkf~pd~~-n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  289 TGQVLSRFHLD--KVPTCVKFHPDNQ-NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             cceEEEEEecC--CCceeeecCCCCC-cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence            88777665443  3478999999874 58889999999999999999988888889999999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEEecC--ceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce---eeeeeeccc--cceeEEE
Q psy6984         217 AMLWDLNDGKHLHTLVHND--IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK---METPFFSLF--RDVLSVA  289 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~v~~~~  289 (380)
                      +++|+.+.+-.+......+  ...++..+|++.+.+.      ..-+..+.++.+...-   ....+.+|.  +-...+.
T Consensus       366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a------Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA------QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             EEEEEcCCCccchhhcchhhccCcceecCCCCCeehh------hccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            9999998887776654333  3567777888766332      1223445555543211   112333443  3355789


Q ss_pred             EeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC-CEEEEEeeCCeE
Q psy6984         290 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG-QTLFAGYSDNTI  368 (380)
Q Consensus       290 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~g~~dg~v  368 (380)
                      |||||++|++|+.||.+.+||..           +.+++..         ..+|.++|..+.|+|.. ..+|+++-||.|
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwk-----------t~kl~~~---------lkah~~~ci~v~wHP~e~Skvat~~w~G~I  499 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWK-----------TTKLVSK---------LKAHDQPCIGVDWHPVEPSKVATCGWDGLI  499 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeech-----------hhhhhhc---------cccCCcceEEEEecCCCcceeEecccCcee
Confidence            99999999999999999999753           2222222         24567789999999985 467888999999


Q ss_pred             EEEE
Q psy6984         369 RVWQ  372 (380)
Q Consensus       369 ~iw~  372 (380)
                      ++|+
T Consensus       500 kiwd  503 (503)
T KOG0282|consen  500 KIWD  503 (503)
T ss_pred             EecC
Confidence            9996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.9e-33  Score=241.26  Aligned_cols=285  Identities=35%  Similarity=0.574  Sum_probs=237.0

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      .+++|...|+++.|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|+++.+++++.|+.+++|+....
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            46789999999999999999999999999999999988888888889999999999999999999999999999998764


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAM  218 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  218 (380)
                      ...... ..|...+.++.+++++  .++++++.++.|++||+.+.+....+..|...+.++.++|+++++++++.|+.++
T Consensus        84 ~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          84 ECVRTL-TGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             cceEEE-eccCCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            433333 3677789999999873  4677777799999999998777777778888999999999999999998899999


Q ss_pred             EEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984         219 LWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       219 i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  297 (380)
                      +||++.++.+..+. +...+..+.|+|++.....      ...++.+.+|+...++....+..+...+.+++|+|++.++
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~------~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  234 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS------SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL  234 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEE------ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence            99999887776664 4558999999998743222      2236789999998877776666777789999999999999


Q ss_pred             EEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       298 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ++++.||.|++|+...+....           .+         ..+...+.+++|+|++++|++++.||.|++|+
T Consensus       235 ~~~~~~~~i~i~~~~~~~~~~-----------~~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         235 ASGSEDGTIRVWDLRTGECVQ-----------TL---------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCCcEEEEEcCCceeEE-----------Ec---------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            988889999999865432211           11         12344678999999999999999999999996

>KOG0276|consensus

Probab=100.00  E-value=2.7e-34  Score=247.34  Aligned_cols=289  Identities=22%  Similarity=0.361  Sum_probs=250.9

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .+..++..|+.+|.++.+||.. ..++++-..|.|.+|+.+.+..     .+.+.--.-+|.++.|-+-.+++++|+.|.
T Consensus         4 ~~krk~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtm-----VksfeV~~~PvRa~kfiaRknWiv~GsDD~   77 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTM-----VKSFEVSEVPVRAAKFIARKNWIVTGSDDM   77 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCC-ceEEEeeecCeeEEEeccccee-----eeeeeecccchhhheeeeccceEEEecCCc
Confidence            3556777899999999999985 4777788899999999765321     223344455788889988899999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      .|+||+.++.+.+..++.|..-|++++.+|...+++|+|.|-+|++||-...-...+..++|+-.|-+++|+|...+ .+
T Consensus        78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n-tF  156 (794)
T KOG0276|consen   78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN-TF  156 (794)
T ss_pred             eEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc-ce
Confidence            99999999999999999999999999999999999999999999999988877777888899999999999998654 79


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC--CEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEee
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG--SLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFS  243 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~  243 (380)
                      ++++-|++|++|.+........+.+|...|+++.+-+.|  .++++|+.|..+++||..+.+++.++. |...|+.++|+
T Consensus       157 aS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh  236 (794)
T KOG0276|consen  157 ASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH  236 (794)
T ss_pred             eeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec
Confidence            999999999999999998888999999999999998744  699999999999999999999988885 78889999999


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      |.-+.      +.....++.+++|...+-+.+..+--..+.+++++-.+.++.++.|...|.|.+
T Consensus       237 p~lpi------iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  237 PELPI------IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CCCcE------EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            97654      334557899999999988888777666788999999998888898888787654

>KOG0295|consensus

Probab=100.00  E-value=4.1e-35  Score=237.05  Aligned_cols=256  Identities=27%  Similarity=0.430  Sum_probs=219.8

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      +..+.++...|+||...|.+|+++.. +.++++||.|-.+++||....    ....+.+.+|...|.+++|-|.|+++++
T Consensus       136 D~~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~----~~c~ks~~gh~h~vS~V~f~P~gd~ilS  210 (406)
T KOG0295|consen  136 DTETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTF----FRCIKSLIGHEHGVSSVFFLPLGDHILS  210 (406)
T ss_pred             EccchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHH----HHHHHHhcCcccceeeEEEEecCCeeee
Confidence            45677889999999999999999986 799999999999999997532    1123457899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      ++.|.+|+.|++.++-.+..+.+|..-|..++.+-||..+|+++.|.++++|-..+...... ...|+-.|.|++|.|..
T Consensus       211 ~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~-lR~hEh~vEci~wap~~  289 (406)
T KOG0295|consen  211 CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE-LREHEHPVECIAWAPES  289 (406)
T ss_pred             cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh-hhccccceEEEEecccc
Confidence            99999999999999999999999999999999999999999999999999998766533222 23577789999997631


Q ss_pred             -------------CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         162 -------------QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       162 -------------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                                   ...++.+++.|++||+||+.++.+...+.+|...|..++|+|.|+||+++..|+.+++||+.+.+..
T Consensus       290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm  369 (406)
T KOG0295|consen  290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM  369 (406)
T ss_pred             cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence                         2248899999999999999999999999999999999999999999999999999999999988766


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      +.+.                                               .|..-+.+++|+.+-.+++||+-|.++++
T Consensus       370 k~~~-----------------------------------------------ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv  402 (406)
T KOG0295|consen  370 KTLE-----------------------------------------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKV  402 (406)
T ss_pred             eccC-----------------------------------------------CCcceeEEEecCCCCceEEeccccceeee
Confidence            5442                                               11122456777777889999999999999


Q ss_pred             Ee
Q psy6984         309 WN  310 (380)
Q Consensus       309 w~  310 (380)
                      |.
T Consensus       403 wE  404 (406)
T KOG0295|consen  403 WE  404 (406)
T ss_pred             ee
Confidence            95

>KOG0265|consensus

Probab=100.00  E-value=1.2e-33  Score=223.16  Aligned_cols=286  Identities=22%  Similarity=0.346  Sum_probs=226.5

Q ss_pred             cccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy6984          55 VPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW  133 (380)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw  133 (380)
                      .+...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.++|..+.|.+|++.+++++.|++++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            3455678999999999999999999999999999999964 345566778999999999999999999999999999999


Q ss_pred             eCCCcceEEEeeCCCcCcEEEEEEccCCCCC-EEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEc
Q psy6984         134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP-IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       134 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      |..+++.... ..+|...|+.+.  |...+. ++.+++.|+++|+||+++......+. ...+++++.|...+..+.+|+
T Consensus       118 D~~tG~~~rk-~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg  193 (338)
T KOG0265|consen  118 DAETGKRIRK-HKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG  193 (338)
T ss_pred             ecccceeeeh-hccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc
Confidence            9988766543 347888888776  444333 45689999999999999766554432 355789999999999999999


Q ss_pred             CCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee----eeeeecc----cc
Q psy6984         213 KDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM----ETPFFSL----FR  283 (380)
Q Consensus       213 ~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~----~~  283 (380)
                      -|+.|++||++.....+.+ .|.+.|+.+..++++.+..-      ..-+..+.+|++.....    ...+.++    ..
T Consensus       194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls------nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  194 IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS------NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             ccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc------ccccceEEEEEecccCCCCceEEEeecchhhhhh
Confidence            9999999999999888877 48999999999999876432      12345667777653221    2222222    23


Q ss_pred             ceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe
Q psy6984         284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY  363 (380)
Q Consensus       284 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~  363 (380)
                      ....++|+|++..+..|+.|+.|++||....+.+..                    .+.|.+.|..++|+|...+|.+++
T Consensus       268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk--------------------lpGh~gsvn~~~Fhp~e~iils~~  327 (338)
T KOG0265|consen  268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK--------------------LPGHYGSVNEVDFHPTEPIILSCS  327 (338)
T ss_pred             hcceeeccCCCCccccccccceEEEeecccccEEEE--------------------cCCcceeEEEeeecCCCcEEEEec
Confidence            466789999999999999999999998644332222                    234566788999999999999999


Q ss_pred             eCCeEEE
Q psy6984         364 SDNTIRV  370 (380)
Q Consensus       364 ~dg~v~i  370 (380)
                      .|.+|.+
T Consensus       328 sdk~i~l  334 (338)
T KOG0265|consen  328 SDKTIYL  334 (338)
T ss_pred             cCceeEe
Confidence            9998865

>KOG0284|consensus

Probab=100.00  E-value=1.4e-35  Score=242.97  Aligned_cols=250  Identities=24%  Similarity=0.399  Sum_probs=214.0

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEEEEeC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~   84 (380)
                      .++...++.|...|.++.|+++ +..+++|+.+|.|++|+.....      .+.+++|. ..|.+++|+|+...+++++.
T Consensus       128 fnFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmnn------Vk~~~ahh~eaIRdlafSpnDskF~t~Sd  200 (464)
T KOG0284|consen  128 FNFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMNN------VKIIQAHHAEAIRDLAFSPNDSKFLTCSD  200 (464)
T ss_pred             eeHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchhh------hHHhhHhhhhhhheeccCCCCceeEEecC
Confidence            3455667899999999999997 7899999999999999865432      22344454 88999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      ||.|+|||....+..+.+.+|.-.|.+++|+|.-.++++++.|..|++||.+++.++..+ .+|...|..+.|+|++  +
T Consensus       201 Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~--N  277 (464)
T KOG0284|consen  201 DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNG--N  277 (464)
T ss_pred             CCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCC--C
Confidence            999999999999888899999999999999999999999999999999998887665443 4788999999999987  5


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                      +|+|++.|..++++|++..+....+.+|...++++.|+| ...+|.+|+.||.|..|.+...+++.              
T Consensus       278 ~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--------------  343 (464)
T KOG0284|consen  278 WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--------------  343 (464)
T ss_pred             eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc--------------
Confidence            899999999999999998887788899999999999999 45688899999999999875322211              


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                                                      ..-..|...|++++|+|-|-.|++|+.|+++++|.-
T Consensus       344 --------------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  344 --------------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             --------------------------------CCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence                                            111245567999999999999999999999999963

>KOG0313|consensus

Probab=100.00  E-value=1e-33  Score=230.17  Aligned_cols=285  Identities=30%  Similarity=0.485  Sum_probs=220.5

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc---CCCEEEEEeCCCcEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS---DGNYALSGSWDKTLRL   90 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~v   90 (380)
                      -|.++|.++...   ++.|+||+.||++++|+....      ....+.||.+.|..+++..   ....|++++.|..+++
T Consensus       103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L  173 (423)
T KOG0313|consen  103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL  173 (423)
T ss_pred             cchhhhhhhccc---CceEEEeecCCeeEEEecCCc------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence            477899998876   458999999999999997643      2345789999999877642   2346999999999999


Q ss_pred             EECCCCce----eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc------------------------ceEE
Q psy6984          91 WDLAAGKT----TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH------------------------CKFT  142 (380)
Q Consensus        91 wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~------------------------~~~~  142 (380)
                      |..+.++.    ++...+|.+.|.+++..++|..+++||.|..++||+....                        ....
T Consensus       174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            99887643    3344699999999999999999999999999999982110                        0112


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      ....+|.++|.++.|.+.   ..++++++|.+|+.||+.++.......+ ....++++.+|..++|++|+.|..+++||.
T Consensus       254 vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             EEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCC
Confidence            344689999999999873   3789999999999999999887766654 457899999999999999999999999999


Q ss_pred             CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEee
Q psy6984         223 NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSS  301 (380)
Q Consensus       223 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~  301 (380)
                      +++.-        .+                                    ....+.+|..-|.++.|+|... .|++|+
T Consensus       330 R~~~g--------s~------------------------------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S  365 (423)
T KOG0313|consen  330 RTGDG--------SV------------------------------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGS  365 (423)
T ss_pred             CCCCC--------ce------------------------------------eEEeeecchhhhhheecCCCCceEEEEEe
Confidence            87631        00                                    1123345555677888888654 589999


Q ss_pred             CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         302 RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       302 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      .|+++++||..... ..+++                  ...|...|+++.|+ ++..|++|+.|..|+|+.-..
T Consensus       366 ~D~t~klWDvRS~k-~plyd------------------I~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  366 YDNTVKLWDVRSTK-APLYD------------------IAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             cCCeEEEEEeccCC-Cccee------------------eccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence            99999999864322 00111                  12356678999996 677899999999999997543

>KOG0281|consensus

Probab=100.00  E-value=3.3e-35  Score=236.49  Aligned_cols=279  Identities=29%  Similarity=0.449  Sum_probs=220.0

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      ...|.|+...   ++.+++|..|++|++||.....     ....+.||++.|.|+.|.  .+.+++|+.|.+|+|||+++
T Consensus       197 skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~-----c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  197 SKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLE-----CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             CCceEEEEec---chhhhcccccCceEEeccccHH-----HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC
Confidence            3578888875   4589999999999999975432     245678999999999884  56999999999999999999


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE--EeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT--IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ++++..+..|..+|..+.|+  ..+++++|.|.++.+||+.......  ....+|...|+.+.|..    .++++++.|.
T Consensus       267 ge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~----kyIVsASgDR  340 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIVSASGDR  340 (499)
T ss_pred             CchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----ceEEEecCCc
Confidence            99999999999999999997  4589999999999999976543221  22348888999999864    3899999999


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeee
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKL  253 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  253 (380)
                      +|++|++.+++.+..+.+|...|.|+.+  .++++++|+.|.+|++||++.|..+..+                      
T Consensus       341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL----------------------  396 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL----------------------  396 (499)
T ss_pred             eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH----------------------
Confidence            9999999999999999999999998876  5889999999999999999887655433                      


Q ss_pred             eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCc
Q psy6984         254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP  333 (380)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  333 (380)
                                               .+|..-|.++.|  |.+.+++|+.||+|++||+.+....+..  ...-.+     
T Consensus       397 -------------------------eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~--~~~~Cl-----  442 (499)
T KOG0281|consen  397 -------------------------EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP--ASTLCL-----  442 (499)
T ss_pred             -------------------------hchHHhhhheee--cCceeeeccccceEEEEecccccCCccc--ccchHH-----
Confidence                                     233334556666  5677999999999999997553221100  000000     


Q ss_pred             ccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         334 DVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                          .....|.+.|+.+.|  |...+++.+.|.+|-|||..
T Consensus       443 ----~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  443 ----RTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ----HhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence                112235667888887  67788899999999999963

>KOG0306|consensus

Probab=100.00  E-value=9.4e-33  Score=242.54  Aligned_cols=330  Identities=23%  Similarity=0.401  Sum_probs=261.2

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ++.-+++||...|+.+.+... +..|++||.|+.|.+||+-.+.     ...++.||.+.|+...|..+.+.+++.+.|+
T Consensus        98 ~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDlV~E~-----Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs  171 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDLVGEE-----GLFRLRGHKDSITQALFLNGDSFLVSVSKDS  171 (888)
T ss_pred             ceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEeccce-----eeEEeecchHHHhHHhccCCCeEEEEeccCc
Confidence            567789999999999999976 7899999999999999986543     2346789999999999999889999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC------------------------cceEE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA------------------------HCKFT  142 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~------------------------~~~~~  142 (380)
                      .|++||+.+..+..+...|.+.+..+++.+  +.+++++.|+.+++|++..                        +....
T Consensus       172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~  249 (888)
T KOG0306|consen  172 MIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREIN  249 (888)
T ss_pred             eEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeE
Confidence            999999999999999999999999999987  7899999999999997400                        00000


Q ss_pred             --------------------------------------------------------------------------------
Q psy6984         143 --------------------------------------------------------------------------------  142 (380)
Q Consensus       143 --------------------------------------------------------------------------------  142 (380)
                                                                                                      
T Consensus       250 l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~  329 (888)
T KOG0306|consen  250 LVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVT  329 (888)
T ss_pred             EeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEE
Confidence                                                                                            


Q ss_pred             -------------------------------------EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee
Q psy6984         143 -------------------------------------IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL  185 (380)
Q Consensus       143 -------------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  185 (380)
                                                           ....+|...|..++++.+.  .++++ +..+.+++|+..+.+.
T Consensus       330 ~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~S-ga~~SikiWn~~t~kc  406 (888)
T KOG0306|consen  330 PSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLAS-GAGESIKIWNRDTLKC  406 (888)
T ss_pred             ecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeee-cCCCcEEEEEccCcce
Confidence                                                 0001344445566665542  23344 4467899998864332


Q ss_pred             eE----------------------------------------eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC-
Q psy6984         186 KI----------------------------------------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND-  224 (380)
Q Consensus       186 ~~----------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-  224 (380)
                      ..                                        ..+.|.+.|++++.+||++.+++||.|.+|++||... 
T Consensus       407 iRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~  486 (888)
T KOG0306|consen  407 IRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV  486 (888)
T ss_pred             eEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence            11                                        1246899999999999999999999999999998631 


Q ss_pred             ----CcE--------EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         225 ----GKH--------LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       225 ----~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                          +..        ..++..++.+.++.+||++.+.++.+      -++.+.+|-+++-+....+++|.-+|.|+..||
T Consensus       487 ~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~  560 (888)
T KOG0306|consen  487 VSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP  560 (888)
T ss_pred             eccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe------ccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence                111        13445688899999999999866543      467788999999999999999999999999999


Q ss_pred             cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         293 DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       293 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      |++.++|||.|..|++|-+.-+           .+         ..+..+|...|.++.|-|+..++++++.||.|+-||
T Consensus       561 DSklivTgSADKnVKiWGLdFG-----------DC---------HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  561 DSKLIVTGSADKNVKIWGLDFG-----------DC---------HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             CcCeEEeccCCCceEEeccccc-----------hh---------hhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            9999999999999999964211           11         112345777789999999999999999999999997


Q ss_pred             e
Q psy6984         373 V  373 (380)
Q Consensus       373 ~  373 (380)
                      -
T Consensus       621 g  621 (888)
T KOG0306|consen  621 G  621 (888)
T ss_pred             h
Confidence            4

>KOG0266|consensus

Probab=100.00  E-value=7.5e-33  Score=249.99  Aligned_cols=249  Identities=29%  Similarity=0.470  Sum_probs=205.6

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce
Q psy6984          63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  140 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~  140 (380)
                      |...|.++.|+++|+++++++.|+.+++|+..+.+  ..+.+.+|...|.+++|+|+++++++++.|+++++||+.....
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence            36779999999999999999999999999997777  7777789999999999999999999999999999999855544


Q ss_pred             EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                      ......+|...|.+++|+|.+  .++++|+.|++|++||++++++...+.+|...|++++|+++++++++++.|+.|++|
T Consensus       238 ~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vw  315 (456)
T KOG0266|consen  238 NLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVW  315 (456)
T ss_pred             EEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEE
Confidence            445556999999999999987  489999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCcEE--EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEE
Q psy6984         221 DLNDGKHL--HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV  298 (380)
Q Consensus       221 d~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  298 (380)
                      |+.++...  ..+...                                            .... .+.+++|+|++++++
T Consensus       316 d~~~~~~~~~~~~~~~--------------------------------------------~~~~-~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  316 DLETGSKLCLKLLSGA--------------------------------------------ENSA-PVTSVQFSPNGKYLL  350 (456)
T ss_pred             ECCCCceeeeecccCC--------------------------------------------CCCC-ceeEEEECCCCcEEE
Confidence            99888632  111000                                            0011 467899999999999


Q ss_pred             EeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         299 SSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       299 s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +++.|+.+++|++........+......                 .-.+.+...++.|+++++|+.|+.|++|++..
T Consensus       351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  351 SASLDRTLKLWDLRSGKSVGTYTGHSNL-----------------VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             EecCCCeEEEEEccCCcceeeecccCCc-----------------ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            9999999999987654332222111110                 01233556689999999999999999999863

>KOG0288|consensus

Probab=100.00  E-value=2.2e-34  Score=236.36  Aligned_cols=291  Identities=22%  Similarity=0.353  Sum_probs=231.8

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      ..+..|.+.++.+.|.++ .+.|++|+.|..|++|++......   ....+.|-.+.|+.+.|.++++++++++.|+.++
T Consensus       169 ~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~---~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSE---LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhh---hhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            346789999999999987 579999999999999998765422   2345677778899999999999999999999999


Q ss_pred             EEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      +|++...+...++.+|.+.|+++.|.-....+++|+.|.++++||+...........  ...+..|+..+    ..+++|
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~~----~~~~Sg  318 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCSI----SDVISG  318 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEecc----eeeeec
Confidence            999999999999999999999999987777799999999999999876544322221  22244455442    257899


Q ss_pred             eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccc
Q psy6984         170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQ  249 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~  249 (380)
                      ..|+.||+||.+........+.+. .|+++..+++|..+.+.+.|..+.++|+++.+....+...           +.  
T Consensus       319 H~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-----------g~--  384 (459)
T KOG0288|consen  319 HFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-----------GF--  384 (459)
T ss_pred             ccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc-----------cc--
Confidence            999999999999988888877665 8999999999999999999999999999887655443211           00  


Q ss_pred             eeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEE
Q psy6984         250 KIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVE  329 (380)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  329 (380)
                                                    ....+.+.+.|||++.|+++||.||.|+||+..++.           +..
T Consensus       385 ------------------------------k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK-----------lE~  423 (459)
T KOG0288|consen  385 ------------------------------KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK-----------LEK  423 (459)
T ss_pred             ------------------------------ccccccceeEECCCCceeeeccCCCcEEEEEccCce-----------EEE
Confidence                                          001235678999999999999999999999875543           222


Q ss_pred             eeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         330 ELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      .+..       ...++.|++++|+|.|..|++++.++.+.+|.
T Consensus       424 ~l~~-------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  424 VLSL-------STSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             Eecc-------CCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            1111       11233688999999999999999999999994

>KOG0278|consensus

Probab=100.00  E-value=1.8e-34  Score=222.19  Aligned_cols=292  Identities=22%  Similarity=0.299  Sum_probs=242.8

Q ss_pred             eEEeEEecCcccceEEEEeCCC--CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPK--FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~--~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      .+...+..||..+|..++++|-  ++-+|+++++||.=.+-+-+..+-     ..++.||...|+....+.+..+.++++
T Consensus         4 ~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----igtfeghkgavw~~~l~~na~~aasaa   78 (334)
T KOG0278|consen    4 RQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----IGTFEGHKGAVWSATLNKNATRAASAA   78 (334)
T ss_pred             ccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----EEeeeccCcceeeeecCchhhhhhhhc
Confidence            3455677899999999999873  456899999999877654433321     346789999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .|-+-+|||.-+|..+..++ |+.-|.+++|+.|..+|++|+.++.+++||+...........+|+..|..+-|+.... 
T Consensus        79 adftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~-  156 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK-  156 (334)
T ss_pred             ccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc-
Confidence            99999999999998888874 7778999999999999999999999999998776555555678999999999987543 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                       .+++...|++||+||.+++..+..+. -...|+++.++++|+++.++ +.+.|.+||..+-..++....+..|.+..++
T Consensus       157 -~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~  233 (334)
T KOG0278|consen  157 -CILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLH  233 (334)
T ss_pred             -eEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcccccccccc
Confidence             57888999999999999988776554 35679999999999987655 5678999999999999999889999999999


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeee-eccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF-FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                      |+..+...      ...+.-++.|+++++.....+ .+|.++|.|+.|+|+|...++||+||+|++|.+..
T Consensus       234 P~k~~fVa------Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  234 PKKEFFVA------GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             CCCceEEe------cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            98643221      223455677888888877775 78899999999999999999999999999997643

>KOG0276|consensus

Probab=100.00  E-value=1e-32  Score=237.68  Aligned_cols=221  Identities=25%  Similarity=0.392  Sum_probs=189.5

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++..++..+.-.+-+|.+..|-+. .+.+++|++|..||||+.....     ..+.+..|.++|.+++.+|..-+++|+|
T Consensus        43 etqtmVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfnynt~e-----kV~~FeAH~DyIR~iavHPt~P~vLtsS  116 (794)
T KOG0276|consen   43 ETQTMVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFNYNTGE-----KVKTFEAHSDYIRSIAVHPTLPYVLTSS  116 (794)
T ss_pred             ccceeeeeeeecccchhhheeeec-cceEEEecCCceEEEEecccce-----eeEEeeccccceeeeeecCCCCeEEecC
Confidence            344455555555567777777665 5789999999999999976543     3456889999999999999999999999


Q ss_pred             CCCcEEEEECCCC-ceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          84 WDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        84 ~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .|-.|++||...+ .+.+.+++|..-|.+++|.| |.+.+|+++-|++|++|.+........ .++|...|+|+.+-+.+
T Consensus       117 DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT-l~gHekGVN~Vdyy~~g  195 (794)
T KOG0276|consen  117 DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT-LEGHEKGVNCVDYYTGG  195 (794)
T ss_pred             CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee-eeccccCcceEEeccCC
Confidence            9999999999875 57788999999999999999 667899999999999999765443333 34999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      ..++|+||+.|.+|++||..+..++..+.||...|+.+.|+|.-.++++|+.||+++||...+.+...++
T Consensus       196 dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  196 DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999998776544433

>KOG0278|consensus

Probab=100.00  E-value=5.9e-34  Score=219.41  Aligned_cols=288  Identities=23%  Similarity=0.333  Sum_probs=242.6

Q ss_pred             cccCCCcceEEEEEc---cCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          59 RLKGHSHFISDIVLS---SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~---~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      ...||..+|..++|+   |+|-+|++++.|+.=.+-+-.+|.-+.++++|+++|....++.+....|+++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            457899999999987   58999999999999999888999999999999999999999999999999999999999998


Q ss_pred             CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-eEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-KINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      .++..+..+  .|.-.|..++|+.+..  .|++|+.+..+|+||++..+. ...+.+|.+.|..+.|-...+.+++++.|
T Consensus        89 ~tgdelhsf--~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd  164 (334)
T KOG0278|consen   89 VTGDELHSF--EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD  164 (334)
T ss_pred             hhhhhhhhh--hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence            877666554  3555789999998754  699999999999999987653 34677899999999999988999999999


Q ss_pred             CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      +.|++||.++++.++.+..+.+++++..++++.+..+.       ..+.+..|+..+-.... .+.....|.+..++|+.
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-------~gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-------YGSSVKFWDAKSFGLLK-SYKMPCNVESASLHPKK  236 (334)
T ss_pred             CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-------cCceeEEecccccccee-eccCccccccccccCCC
Confidence            99999999999999999999999999999998775443       23566677776544332 23344568899999999


Q ss_pred             CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         295 RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       295 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ..++.|++|..++-||..++..+..                   ....|.++|.++.|||||...|+||.||+|++|...
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~-------------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGS-------------------YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeee-------------------cccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            9999999999999998766544322                   124567789999999999999999999999999986


Q ss_pred             eec
Q psy6984         375 VTS  377 (380)
Q Consensus       375 ~~~  377 (380)
                      ...
T Consensus       298 ~~~  300 (334)
T KOG0278|consen  298 PGK  300 (334)
T ss_pred             CCC
Confidence            543

>KOG0310|consensus

Probab=100.00  E-value=2.1e-32  Score=229.37  Aligned_cols=281  Identities=25%  Similarity=0.433  Sum_probs=224.4

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      .+.|++++|+|..|.-+|.++. -.+.+|+....     .+.+.+....+.|+++.|-.||++|++|+..|.|+|+|..+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~-----~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~   99 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR-----SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS   99 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchh-----hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence            4689999999987766666664 37788875422     12333455667899999999999999999999999999877


Q ss_pred             CceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      ...++.+..|..++..+.|+|++. .+++|+.|+.+++||+.+... .....+|++.|.|.+++|... .+++|||.||.
T Consensus       100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~-hivvtGsYDg~  177 (487)
T KOG0310|consen  100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPAND-HIVVTGSYDGK  177 (487)
T ss_pred             HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCC-eEEEecCCCce
Confidence            777888999999999999999655 566888999999999887764 555679999999999999654 37899999999


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeee
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD  254 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  254 (380)
                      ||+||++..........|..+|..+.+-|.|..+++++.. .+++||+-+|.+.                          
T Consensus       178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql--------------------------  230 (487)
T KOG0310|consen  178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL--------------------------  230 (487)
T ss_pred             EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee--------------------------
Confidence            9999999874444444688999999999999999988764 8999998765422                          


Q ss_pred             eeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcc
Q psy6984         255 ISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPD  334 (380)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  334 (380)
                                          ...+.+|...|+|+++..++..|+||+-||.|++|++..           -+++..+.  
T Consensus       231 --------------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~-----------~Kvv~s~~--  277 (487)
T KOG0310|consen  231 --------------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN-----------YKVVHSWK--  277 (487)
T ss_pred             --------------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccc-----------eEEEEeee--
Confidence                                223345677899999999999999999999999998422           22333222  


Q ss_pred             cccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         335 VVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                              .+++|.+++.|||++.++.|..||.+.+-+
T Consensus       278 --------~~~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  278 --------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             --------cccceeeEEecCCCceEEEecccceeeeeh
Confidence                    245688999999999999999999887653

>KOG0293|consensus

Probab=100.00  E-value=3.4e-33  Score=229.48  Aligned_cols=290  Identities=24%  Similarity=0.360  Sum_probs=232.6

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ...|..|.+.|..+.|+++ +++|||++.|.+..+|++..+.. .. ..+++.+|..+|..+.||||.+||++++.|..+
T Consensus       217 ~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~-~k-l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~  293 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVH-FK-LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL  293 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcc-ee-eeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence            3467789999999999998 79999999999999999875543 22 235688999999999999999999999999999


Q ss_pred             EEEECCCCceeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984          89 RLWDLAAGKTTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      .+||+.+|.....+.. |...+.+++|.|||..+++|+.|+++..||+..... ...+.-....|.++++.+++.  .++
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk--~vl  370 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGK--YVL  370 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCc--EEE
Confidence            9999999998887753 457899999999999999999999999999765432 222333446799999999876  566


Q ss_pred             EEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-e--cCceEEEEeec
Q psy6984         168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-H--NDIITALCFSP  244 (380)
Q Consensus       168 s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~i~~~~~~~  244 (380)
                      +.+.|..|++++.......... ....+|++..+|.+++++++.-.+..+++||++....+.... |  ...+-.-||.-
T Consensus       371 ~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  371 LVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             EEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            7778999999998764333222 234579999999999999999999999999998766554432 2  22233344432


Q ss_pred             Cc-ccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEec
Q psy6984         245 NR-SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWNT  311 (380)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~  311 (380)
                      .. .+      +..+..++.+++|....+++...+.+|...|.+++|+|... .|||+|.||+||||..
T Consensus       450 ~~~~f------iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  450 GNDKF------IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             CCcce------EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            21 11      44556788999999999999999999999999999999765 6899999999999964

>KOG0268|consensus

Probab=100.00  E-value=4.7e-34  Score=230.86  Aligned_cols=286  Identities=22%  Similarity=0.382  Sum_probs=222.4

Q ss_pred             cccCCCcceEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          59 RLKGHSHFISDIVLSSDG-NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      .+.||.++|.|++=+|.. ..+++|+.||.|+|||+...++...+..|.+.|..|++..  ..+++++.|++|+.|-...
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence            468999999999999976 7899999999999999999999999999999999999876  7789999999999998654


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCc
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMN  216 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~  216 (380)
                      ...-.+.  + ...+..+..+.  ....++|+|  ..|.|||.....++..+.--...|.++.|+|-. ..|++++.|+.
T Consensus       139 ~p~~til--g-~s~~~gIdh~~--~~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  139 PPLHTIL--G-KSVYLGIDHHR--KNSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             Ccceeee--c-ccccccccccc--ccccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence            3221221  1 11233344333  234677776  568999997766666665556679999999965 46778889999


Q ss_pred             EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc-eeeeeeeccccceeEEEEeecCC
Q psy6984         217 AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG-KMETPFFSLFRDVLSVAFSVDNR  295 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~  295 (380)
                      |.+||++.+.+++.+......+.++|+| ..+.+..     ...+.+++.|+...- .......+|.+.|.+++|||.|+
T Consensus       212 IvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~-----a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVA-----ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ  285 (433)
T ss_pred             eEEEecccCCccceeeeeccccceecCc-cccceee-----ccccccceehhhhhhcccchhhcccceeEEEeccCCCcc
Confidence            9999999999999998888899999999 5444332     234677777776432 22344567778899999999999


Q ss_pred             EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         296 QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       296 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      .++|||.|.+|+||....+....++  .+++|.                 -|+++.||.|.+++++||.|+.|++|....
T Consensus       286 EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq-----------------~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  286 EFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQ-----------------HVFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             hhccccccceEEEeecCCCcchhhh--hHhhhh-----------------eeeEEEEeccccEEEecCCCcceeeeecch
Confidence            9999999999999987665544443  223332                 377999999999999999999999998765


Q ss_pred             ecc
Q psy6984         376 TSR  378 (380)
Q Consensus       376 ~~~  378 (380)
                      .++
T Consensus       347 sek  349 (433)
T KOG0268|consen  347 SEK  349 (433)
T ss_pred             hhh
Confidence            444

>KOG1407|consensus

Probab=100.00  E-value=6.3e-32  Score=209.45  Aligned_cols=287  Identities=23%  Similarity=0.336  Sum_probs=222.8

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTL   88 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i   88 (380)
                      ..+++|.+.|.+++|+-+ +..|++|+.|+++++|+++..+..   ......+|.+.|..++|+| ...++++++.|..|
T Consensus        14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~---~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFR---KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI   89 (313)
T ss_pred             HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhh---hhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence            567899999999999987 789999999999999999876322   2345789999999999986 56899999999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ++||.+.+++........+.+ -+.|+|+|.+++.+..|..|.+.|.++.......  ...-.++-+.|+ +... +++.
T Consensus        90 r~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~-~~nd-~Ffl  164 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWN-NSND-LFFL  164 (313)
T ss_pred             EEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeec-CCCC-EEEE
Confidence            999999999998876655544 5789999999999999999999997765443222  223346667777 3333 5554


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      ....|.|.|......+.+..+..|.....|+.|+|+|++||+|+.|..+.+||+..--.+..                  
T Consensus       165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~------------------  226 (313)
T KOG1407|consen  165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERC------------------  226 (313)
T ss_pred             ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhee------------------
Confidence            45578999999998898999999999999999999999999999999999999854222111                  


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV  328 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  328 (380)
                                                   +..+.-+|..+.||.||++||+||+|..|-|=++           ++...+
T Consensus       227 -----------------------------isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v-----------etGd~~  266 (313)
T KOG1407|consen  227 -----------------------------ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV-----------ETGDRV  266 (313)
T ss_pred             -----------------------------eccccCceEEEEeccCcceeeccCccceEEeEec-----------ccCCeE
Confidence                                         1122346778999999999999999998877654           444444


Q ss_pred             EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC---------CeEEEEEe
Q psy6984         329 EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD---------NTIRVWQV  373 (380)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d---------g~v~iw~~  373 (380)
                      .+++.+          +.-..|+|+|...+||-++.|         |.|++|-+
T Consensus       267 ~eI~~~----------~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  267 WEIPCE----------GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             EEeecc----------CCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence            444321          223689999999999866543         56777754

>KOG0292|consensus

Probab=100.00  E-value=3.2e-32  Score=243.17  Aligned_cols=288  Identities=24%  Similarity=0.425  Sum_probs=230.6

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      |..-+.+|..++|||+. ..++++-..|.|++||..-     .....++..|.++|..+.|+|++.++++|+.|-.|+||
T Consensus         5 fEskSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM-----~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVW   78 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRM-----GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVW   78 (1202)
T ss_pred             hhcccccccceecCCCC-CEEEEeecCceeeeehhhh-----hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEE
Confidence            33446789999999994 5888888999999998653     23456788999999999999999999999999999999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                      +..+.+++.++.+|..-|+.+.|++.-..++++|.|.+|+||+..+...+..+ .+|.-.|-|.+|+|..  .++++++-
T Consensus        79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptE--DlIVSaSL  155 (1202)
T KOG0292|consen   79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTE--DLIVSASL  155 (1202)
T ss_pred             ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCcc--ceEEEecc
Confidence            99999999999999999999999999999999999999999998887766554 4899999999999964  37999999


Q ss_pred             CCeEEEEeCCCc-----------------------------eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         172 DRMVKVWNLTNC-----------------------------KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       172 d~~v~iwd~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      |.+||+||+...                             .......||...|+.++|+|.-.++++|+.|+.|++|.+
T Consensus       156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm  235 (1202)
T KOG0292|consen  156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM  235 (1202)
T ss_pred             cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence            999999998421                             112345689999999999999999999999999999987


Q ss_pred             CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         223 NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       223 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      ...+                                       .|.+      ...++|...|.++-|+|....++|.|+
T Consensus       236 netK---------------------------------------aWEv------DtcrgH~nnVssvlfhp~q~lIlSnsE  270 (1202)
T KOG0292|consen  236 NETK---------------------------------------AWEV------DTCRGHYNNVSSVLFHPHQDLILSNSE  270 (1202)
T ss_pred             cccc---------------------------------------ceee------hhhhcccCCcceEEecCccceeEecCC
Confidence            5432                                       1211      123578889999999999999999999


Q ss_pred             CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       303 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      |++|++||+.....+..+           +.         ....-+.++-+|..+++|+|- |+-+.+|.++
T Consensus       271 DksirVwDm~kRt~v~tf-----------rr---------endRFW~laahP~lNLfAAgH-DsGm~VFkle  321 (1202)
T KOG0292|consen  271 DKSIRVWDMTKRTSVQTF-----------RR---------ENDRFWILAAHPELNLFAAGH-DSGMIVFKLE  321 (1202)
T ss_pred             CccEEEEecccccceeee-----------ec---------cCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence            999999987544332221           11         112234456677777776554 4445555543

>KOG0282|consensus

Probab=100.00  E-value=1.2e-33  Score=236.51  Aligned_cols=289  Identities=21%  Similarity=0.298  Sum_probs=237.3

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      +++++.||+..|+++.|.|....+|++++.|+.|+||++-.+..    ...++.+|..+|.++.|+++|..+++++.|+.
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~----~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR----CLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc----eehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            67899999999999999997688999999999999999865321    24568999999999999999999999999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      |++||+++|+.+..+.. ...+.|+.|.||+ +.+++|..|+.|+.||++.+... .....|-..|..+.|.+++.  .+
T Consensus       282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv-qeYd~hLg~i~~i~F~~~g~--rF  357 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV-QEYDRHLGAILDITFVDEGR--RF  357 (503)
T ss_pred             eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH-HHHHhhhhheeeeEEccCCc--eE
Confidence            99999999999998753 3567899999998 78899999999999999876533 22345777899999999765  68


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE---EE---EecCceEE
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH---TL---VHNDIITA  239 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~---~~~~~i~~  239 (380)
                      ++.+.|+.+++|+.+.......... +.-...++..+|++++++.-+.|+.|.++.+...-+..   .+   ........
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence            9999999999999987654433221 22345678899999999999999999999864432221   11   23556778


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEe
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWN  310 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~  310 (380)
                      +.|||++.+...      +..++.+.+|+.++.++...+..|.+.+..+.|+|... .+|||+-||.|++|+
T Consensus       438 v~fSpDG~~l~S------GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  438 VDFSPDGRTLCS------GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEEcCCCCeEEe------ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            899999987443      34578899999999999888888889999999999764 689999999999995

>KOG0275|consensus

Probab=100.00  E-value=8.4e-34  Score=226.58  Aligned_cols=283  Identities=22%  Similarity=0.363  Sum_probs=229.8

Q ss_pred             CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee--------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy6984          62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF--------EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW  133 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw  133 (380)
                      +....+.|..|+|||+||++|+.||.|.+||..+|+..+.+        .-+..+|.|+.|+.|...+|+|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45566889999999999999999999999999999876543        2467889999999999999999999999999


Q ss_pred             eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       134 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      .+.++.++...+.+|+..|+|+.|+.++.  .+++++.|.++|+-.+++++....+.||...|+...|.++|..+++++.
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs  368 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS  368 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence            99888887777789999999999998765  5889999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc---ccceeE
Q psy6984         214 DMNAMLWDLNDGKHLHTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL---FRDVLS  287 (380)
Q Consensus       214 d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~  287 (380)
                      ||++++|+..+.+.+.++.   .+.+++++..-|..+-..+.+.     ..+.+++..+. |.....+.+.   .++..+
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-----rsntv~imn~q-GQvVrsfsSGkREgGdFi~  442 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN  442 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-----CCCeEEEEecc-ceEEeeeccCCccCCceEE
Confidence            9999999999998887775   3556777777776655444332     22334444443 3444444332   245678


Q ss_pred             EEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCe
Q psy6984         288 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNT  367 (380)
Q Consensus       288 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~  367 (380)
                      ...||.|.++++.++|+.++.+....+.--..           +         ..|...+..++.+|..+.||+-+.||.
T Consensus       443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~t-----------l---------~VhEkdvIGl~HHPHqNllAsYsEDgl  502 (508)
T KOG0275|consen  443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERT-----------L---------PVHEKDVIGLTHHPHQNLLASYSEDGL  502 (508)
T ss_pred             EEecCCCcEEEEEccCcEEEEEEeecCceeee-----------e---------ecccccccccccCcccchhhhhcccch
Confidence            88999999999999999999998655432111           1         123334567888999999999999999


Q ss_pred             EEEEE
Q psy6984         368 IRVWQ  372 (380)
Q Consensus       368 v~iw~  372 (380)
                      +++|.
T Consensus       503 lKLWk  507 (508)
T KOG0275|consen  503 LKLWK  507 (508)
T ss_pred             hhhcC
Confidence            99995

>KOG0296|consensus

Probab=100.00  E-value=1.4e-31  Score=216.83  Aligned_cols=293  Identities=17%  Similarity=0.250  Sum_probs=241.0

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      .+.++...+.||+..|+++.|+.+ +.+||||+-+|.|+||+........     .+..-.+.+.-+.|+|-+..|+.|+
T Consensus        94 ~~ge~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~-----~~~~e~~dieWl~WHp~a~illAG~  167 (399)
T KOG0296|consen   94 STGEFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQW-----KLDQEVEDIEWLKWHPRAHILLAGS  167 (399)
T ss_pred             cCCcceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEE-----EeecccCceEEEEecccccEEEeec
Confidence            345678899999999999999987 7899999999999999986543221     2223455678899999999999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .||++.+|.+.++...+.+.+|..++++=.|.|+|++++++..||+|++|+..+...+..+........+|+.++..+. 
T Consensus       168 ~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-  246 (399)
T KOG0296|consen  168 TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-  246 (399)
T ss_pred             CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-
Confidence            9999999999988888889999999999999999999999999999999998887666555433334466777776543 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeee--------CCccceEEEE---EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHS--------GHTGYLNTVT---VSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~--------~~~~~i~~~~---~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                       .+++|..++.+++-+..+++.+....        .+...+.++.   ++..-.+.|+|+.||+|.|||+...+.-+.+.
T Consensus       247 -~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~  325 (399)
T KOG0296|consen  247 -TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE  325 (399)
T ss_pred             -eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc
Confidence             67888889998888887777655443        3344444444   44456688999999999999999988888889


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      |+..|..+.|-+ ..+..      ....++.++.|+.++|.....+.+|...|.+++++|+.+.++|+|.|++.++|+.
T Consensus       326 he~~V~~l~w~~-t~~l~------t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  326 HEDGVTKLKWLN-TDYLL------TACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             CCCceEEEEEcC-cchhe------eeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence            999999999988 33322      2335788999999999999999999999999999999999999999999999863

>KOG0306|consensus

Probab=100.00  E-value=5.9e-32  Score=237.57  Aligned_cols=286  Identities=24%  Similarity=0.397  Sum_probs=232.5

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      .++.||...|.+++++.+ ...+++|+ .+++++|+.+......+     +.  .+.+.+..|-|.++++++|...|.+.
T Consensus       367 i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~t~kciRT-----i~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~  437 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRDTLKCIRT-----IT--CGYILASKFVPGDRYIVLGTKNGELQ  437 (888)
T ss_pred             eeeccchhheeEEEeecC-ceeeeecC-CCcEEEEEccCcceeEE-----ec--cccEEEEEecCCCceEEEeccCCceE
Confidence            356799999999999976 34555555 57999999765433221     22  23788999999999999999999999


Q ss_pred             EEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-------cceEEEe----eCCCcCcEEEEEEc
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-------HCKFTIV----EDGHSDWVSCVRFS  158 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-------~~~~~~~----~~~~~~~v~~~~~~  158 (380)
                      +||+.+...+...+.|.++|.+++.+||+..+++||.|.+|++||..-       +.+...+    ...-++.|-|+.++
T Consensus       438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence            999999999999999999999999999999999999999999998421       1111000    01234669999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      |++.  +|+.+=-|.+|++|-+.+.++...+.||.-+|.|+.++||++.++|||.|..|++|-+.-|.+           
T Consensus       518 pdgk--~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC-----------  584 (888)
T KOG0306|consen  518 PDGK--LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----------  584 (888)
T ss_pred             CCCc--EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh-----------
Confidence            9875  788899999999999999999999999999999999999999999999999999997654432           


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                                                          ...++.|...|.++.|-|....+.|||.|+.|+.||..      
T Consensus       585 ------------------------------------HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~------  622 (888)
T KOG0306|consen  585 ------------------------------------HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE------  622 (888)
T ss_pred             ------------------------------------hhhhhcccCceeEEEEcccceeEEEecCcceEEeechh------
Confidence                                                23455666778899999999999999999999999742      


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                           ...++..+         ..|...+++++-+|+|.+++++|.|..||+|.-
T Consensus       623 -----kFe~iq~L---------~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  623 -----KFEEIQKL---------DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             -----hhhhheee---------ccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence                 22233222         345667888999999999999999999999964

>KOG1539|consensus

Probab=100.00  E-value=9.4e-31  Score=232.50  Aligned_cols=341  Identities=21%  Similarity=0.326  Sum_probs=263.3

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .-.+.|++|...+.|=+.++.|+.+|.+++|++.....     ..+++++...|+++.-+|--+.++.|..+|.|.++++
T Consensus       157 ~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl  231 (910)
T KOG1539|consen  157 VEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV-----VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL  231 (910)
T ss_pred             ccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE-----EEEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence            33344999977667778899999999999999986553     3456788899999999999999999999999999999


Q ss_pred             CCCceeeeecccCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984          94 AAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus        94 ~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      +.++.+.+++.-.+.|+.++|..||.. +++|+..|.+-+||+............|...+..+.|.|.  .+++++.+.|
T Consensus       232 K~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~--epVl~ta~~D  309 (910)
T KOG1539|consen  232 KFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG--EPVLVTAGAD  309 (910)
T ss_pred             ccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC--CceEeeccCC
Confidence            999999999866799999999999985 5667777999999999888888888899888888999885  4689999999


Q ss_pred             CeEEEEeCCC--c--eeeEeeeCCccceEEEEEc-CCCCEEEEEcCCCcEEEEECCCC-------c--------EE----
Q psy6984         173 RMVKVWNLTN--C--KLKINHSGHTGYLNTVTVS-PDGSLCASGGKDMNAMLWDLNDG-------K--------HL----  228 (380)
Q Consensus       173 ~~v~iwd~~~--~--~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~-------~--------~~----  228 (380)
                      ..+++|=..+  +  +......||..+..++.|. .+|..+.+++.|+.++.+++...       +        +.    
T Consensus       310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~  389 (910)
T KOG1539|consen  310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS  389 (910)
T ss_pred             CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence            9999885543  2  4455667999999999988 68888999999988877755210       0        00    


Q ss_pred             ---------E--------------------------------------EEEec------CceEEEEeecCcccceeeeee
Q psy6984         229 ---------H--------------------------------------TLVHN------DIITALCFSPNRSFQKIKLDI  255 (380)
Q Consensus       229 ---------~--------------------------------------~~~~~------~~i~~~~~~~~~~~~~~~~~~  255 (380)
                               .                                      .+.+.      ..+.+++.++++.+..++   
T Consensus       390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG---  466 (910)
T KOG1539|consen  390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG---  466 (910)
T ss_pred             hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe---
Confidence                     0                                      00001      223444444444443332   


Q ss_pred             eeeccccceEEEEcCCceeeeee---eccccceeEEEEeecCCEEEEeeCCCcEEEEecccce-----------------
Q psy6984         256 SRTLQKSNLILYPINHGKMETPF---FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-----------------  315 (380)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~-----------------  315 (380)
                         ..++.+.+|+...|.....+   ..|.++|++++....++.++|++.+|.+++|+..+..                 
T Consensus       467 ---~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h  543 (910)
T KOG1539|consen  467 ---YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH  543 (910)
T ss_pred             ---ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence               34667788888888777666   4778899999999999999999999999999975432                 


Q ss_pred             -------------eeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         316 -------------KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       316 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                                   .+.++|..+.+++.         .-..|...+++++|||||++|++++.|++||+||+.++
T Consensus       544 r~s~l~a~~~ddf~I~vvD~~t~kvvR---------~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  544 RVSDLLAIALDDFSIRVVDVVTRKVVR---------EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             ehhhhhhhhcCceeEEEEEchhhhhhH---------HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence                         12333333333322         22457888999999999999999999999999998754

>KOG0292|consensus

Probab=100.00  E-value=7.4e-31  Score=234.52  Aligned_cols=322  Identities=21%  Similarity=0.370  Sum_probs=239.6

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .|+..|.+|.|+|..+.|||. ..+|++|++|-+|+||+.+..+..     -++.||-++|..+.|++.--+++++|.|.
T Consensus        42 tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk~rrcl-----ftL~GHlDYVRt~~FHheyPWIlSASDDQ  115 (1202)
T KOG0292|consen   42 TLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYKTRRCL-----FTLLGHLDYVRTVFFHHEYPWILSASDDQ  115 (1202)
T ss_pred             hHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecccceeh-----hhhccccceeEEeeccCCCceEEEccCCC
Confidence            467789999999999999998 579999999999999998755433     35789999999999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC----------------------------c
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA----------------------------H  138 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~----------------------------~  138 (380)
                      +|+||++.+++++..+.+|..-|.|..|+|....++++|-|.+||+||...                            .
T Consensus       116 TIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~D  195 (1202)
T KOG0292|consen  116 TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTD  195 (1202)
T ss_pred             eEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcC
Confidence            999999999999999999999999999999999999999999999999421                            0


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      .....+.++|...|+-++|+|.  .+++++|+.|+.|++|.+...+.  +-...+|...|.++.|+|...++++.|.|+.
T Consensus       196 aVVK~VLEGHDRGVNwaAfhpT--lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks  273 (1202)
T KOG0292|consen  196 AVVKHVLEGHDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS  273 (1202)
T ss_pred             eeeeeeecccccccceEEecCC--cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc
Confidence            1122345789999999999995  45899999999999999876443  2245689999999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEEe-cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC
Q psy6984         217 AMLWDLNDGKHLHTLVH-NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR  295 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  295 (380)
                      |++||+...+.++++.+ ++.--.++.+|.....+.+       .++...+|-+..          ..+..++    +++
T Consensus       274 irVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-------HDsGm~VFkleR----------Erpa~~v----~~n  332 (1202)
T KOG0292|consen  274 IRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-------HDSGMIVFKLER----------ERPAYAV----NGN  332 (1202)
T ss_pred             EEEEecccccceeeeeccCCeEEEEEecCCcceeeee-------cCCceEEEEEcc----------cCceEEE----cCC
Confidence            99999999888888854 4555566666654332211       234444443321          1222222    344


Q ss_pred             EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEE-EEe-eCCeEEEEEe
Q psy6984         296 QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF-AGY-SDNTIRVWQV  373 (380)
Q Consensus       296 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~g~-~dg~v~iw~~  373 (380)
                      .|.-.- |+.|+.+|+.+.....+..+....               .......++.++|....+. +.+ ..|.-.++.+
T Consensus       333 ~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g---------------~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i  396 (1202)
T KOG0292|consen  333 GLFYVK-DRFIRSYDLRTQKDTAVASLRRPG---------------TLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI  396 (1202)
T ss_pred             EEEEEc-cceEEeeeccccccceeEeccCCC---------------cccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence            444433 888888887654333332221110               0122346788898766544 333 3444445544

>KOG0645|consensus

Probab=100.00  E-value=3.5e-30  Score=200.81  Aligned_cols=245  Identities=23%  Similarity=0.380  Sum_probs=194.0

Q ss_pred             ccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEEECCCCce---eeee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy6984          58 KRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLWDLAAGKT---TRRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKL  132 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~---~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~i  132 (380)
                      ..+.+|.+.+..++|+|. |..||+++.|..|++|+...+..   ...+ .+|++.|++++|+|.|++|++||.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            356899999999999998 88999999999999999875322   2222 469999999999999999999999999999


Q ss_pred             EeCCCcc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc---eeeEeeeCCccceEEEEEcCCCCEE
Q psy6984         133 WNTLAHC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC---KLKINHSGHTGYLNTVTVSPDGSLC  208 (380)
Q Consensus       133 wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l  208 (380)
                      |.-.... ......++|.+.|.|++|++++.  +|++++.|+.|-+|.+...   +....+.+|...|..+.|+|...+|
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            9743221 22334569999999999999764  8999999999999998743   4455678899999999999999999


Q ss_pred             EEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEE
Q psy6984         209 ASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV  288 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  288 (380)
                      +++++|.+|++|+-..+.                    .+                        .....+.+|...|+++
T Consensus       166 ~S~SYDnTIk~~~~~~dd--------------------dW------------------------~c~~tl~g~~~TVW~~  201 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDD--------------------DW------------------------ECVQTLDGHENTVWSL  201 (312)
T ss_pred             EEeccCCeEEEEeecCCC--------------------Ce------------------------eEEEEecCccceEEEE
Confidence            999999999999754211                    11                        0112233455678999


Q ss_pred             EEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeE
Q psy6984         289 AFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI  368 (380)
Q Consensus       289 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v  368 (380)
                      +|+|.|..|++++.|++|+||....       +                 -...|...++.+.|.  ...|++|+.|+.|
T Consensus       202 ~F~~~G~rl~s~sdD~tv~Iw~~~~-------~-----------------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i  255 (312)
T KOG0645|consen  202 AFDNIGSRLVSCSDDGTVSIWRLYT-------D-----------------LSGMHSRALYDVPWD--NGVIASGGGDDAI  255 (312)
T ss_pred             EecCCCceEEEecCCcceEeeeecc-------C-----------------cchhcccceEeeeec--ccceEeccCCCEE
Confidence            9999999999999999999996321       0                 112234457788897  6679999999999


Q ss_pred             EEEEee
Q psy6984         369 RVWQVS  374 (380)
Q Consensus       369 ~iw~~~  374 (380)
                      ++|.-+
T Consensus       256 ~lf~~s  261 (312)
T KOG0645|consen  256 RLFKES  261 (312)
T ss_pred             EEEEec
Confidence            999765

>KOG0285|consensus

Probab=100.00  E-value=1.8e-31  Score=215.63  Aligned_cols=259  Identities=25%  Similarity=0.440  Sum_probs=216.7

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      +..+.+|..+|.||...|..+++++.. .++++++.|+.|+-||+....     ....+.||-..|.|+..+|.-+.|++
T Consensus       179 Dlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nk-----vIR~YhGHlS~V~~L~lhPTldvl~t  252 (460)
T KOG0285|consen  179 DLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNK-----VIRHYHGHLSGVYCLDLHPTLDVLVT  252 (460)
T ss_pred             EcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhh-----hHHHhccccceeEEEeccccceeEEe
Confidence            356778999999999999999999874 599999999999999986432     24457899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      |+.|..++|||+++...+..+.+|..+|..+.+.|-...+++||.|++|++||+..+.....+. .|...+.+++.+|..
T Consensus       253 ~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e  331 (460)
T KOG0285|consen  253 GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKE  331 (460)
T ss_pred             cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCch
Confidence            9999999999999999999999999999999999988899999999999999998776655443 677789999999864


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                        ..|++++.| .|+.|++..+.+...+.+|...|++++.+.|+ ++++|+..|.+.+||.+++-..+.....-      
T Consensus       332 --~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~v------  401 (460)
T KOG0285|consen  332 --NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIV------  401 (460)
T ss_pred             --hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccc------
Confidence              357777765 79999999999888899999999999999887 66789999999999998875432221000      


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                       .|.                           .     ......|++.+|...|..|+||..|.+|++|.
T Consensus       402 -qpG---------------------------S-----l~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  402 -QPG---------------------------S-----LESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             -cCC---------------------------c-----cccccceeEEeecccCceEEeccCCcceEEEe
Confidence             000                           0     01123577889999999999999999999996

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.4e-30  Score=231.12  Aligned_cols=244  Identities=19%  Similarity=0.353  Sum_probs=189.4

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC--cccccccccCCCcceEEEEEccCC-CEEEEEeCCCc
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRLKGHSHFISDIVLSSDG-NYALSGSWDKT   87 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~   87 (380)
                      .+.||.+.|+++.|+|..+++|++|+.||+|++|++......  ...+...+.+|...|.+++|+|++ ++|++++.|+.
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            478999999999999954689999999999999998754211  112344678999999999999985 69999999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc-EEEEEEccCCCCCEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-VSCVRFSPNHQNPII  166 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l  166 (380)
                      |+|||+.+++....+..|...|.+++|+|++..+++++.|+.|++||.++....... .+|... ...+.|.++..  .+
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl-~~H~~~~~~~~~w~~~~~--~i  226 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV-EAHASAKSQRCLWAKRKD--LI  226 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE-ecCCCCcceEEEEcCCCC--eE
Confidence            999999999999899999999999999999999999999999999998876554433 356543 34566777543  45


Q ss_pred             EEEe----CCCeEEEEeCCCceeeEe-ee-CCccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEEEE--ecCce
Q psy6984         167 VSAG----WDRMVKVWNLTNCKLKIN-HS-GHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHTLV--HNDII  237 (380)
Q Consensus       167 ~s~~----~d~~v~iwd~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~--~~~~i  237 (380)
                      ++++    .|+.|++||+++...... .. .+...+....|+++++++++++ .|+.|++||+.+++.+....  ...++
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~  306 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH  306 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence            5543    479999999987543222 22 2234566677899999998887 49999999999988766543  45678


Q ss_pred             EEEEeecCcccceeeeeeee
Q psy6984         238 TALCFSPNRSFQKIKLDISR  257 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~  257 (380)
                      ..++|.|........+++.+
T Consensus       307 ~g~~~~pk~~~dv~~~Ei~r  326 (493)
T PTZ00421        307 KGLCMMPKWSLDTRKCEIAR  326 (493)
T ss_pred             cceEecccccccccceeeeE
Confidence            89999997665555555443

>KOG0277|consensus

Probab=100.00  E-value=1.6e-31  Score=206.47  Aligned_cols=242  Identities=25%  Similarity=0.443  Sum_probs=197.7

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~   94 (380)
                      ++.+..++|++...+.+++|+.||++++||+...    ..|...++.|...|.++.+++ ..+.++++++|++|++|+..
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence            5788999999988899999999999999996533    236677899999999999997 46678899999999999999


Q ss_pred             CCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      -.+.++++.+|...|...+|+| .++.++++|.|+++++||++...+... ...|...+.|..|+.-. ..+++||+.|+
T Consensus       136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~  213 (311)
T KOG0277|consen  136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYN-HNVLATGGVDN  213 (311)
T ss_pred             CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccC-CcEEEecCCCc
Confidence            9999999999999999999998 567899999999999999876555444 45788789999998753 45899999999


Q ss_pred             eEEEEeCCCce-eeEeeeCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEE-EEEEecCceEEEEeecCcccce
Q psy6984         174 MVKVWNLTNCK-LKINHSGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHL-HTLVHNDIITALCFSPNRSFQK  250 (380)
Q Consensus       174 ~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~  250 (380)
                      .||.||+++.+ .+..+.+|.-.|..+.|||. -..|+++++|.+++|||...+... .+..                  
T Consensus       214 ~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~------------------  275 (311)
T KOG0277|consen  214 LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD------------------  275 (311)
T ss_pred             eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh------------------
Confidence            99999998754 45567899999999999995 458999999999999998754321 1111                  


Q ss_pred             eeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee-cCCEEEEeeCCCcEEEEe
Q psy6984         251 IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV-DNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~  310 (380)
                                                   .|.+-+..+.||+ +..++|+++-|+.+++|+
T Consensus       276 -----------------------------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  276 -----------------------------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             -----------------------------ccceEEeccccccccCceeeecccccceeeec
Confidence                                         1111233455655 467899999999999996

>KOG0283|consensus

Probab=100.00  E-value=4.2e-31  Score=235.64  Aligned_cols=242  Identities=27%  Similarity=0.453  Sum_probs=199.0

Q ss_pred             cc-CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC--------------------------------C----------
Q psy6984          60 LK-GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA--------------------------------G----------   96 (380)
Q Consensus        60 ~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--------------------------------~----------   96 (380)
                      +. .|.+.|+++.|++||+|||+||.|+.|+||.+..                                .          
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 8999999999999999999999999999998755                                0          


Q ss_pred             ------------------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          97 ------------------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        97 ------------------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                                        ++...+.+|.+.|.+++|+. ..+|+++|.|++||+|++....++..+  .|.+.|+|++|+
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFn  418 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFN  418 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEec
Confidence                              11234568999999999987 458999999999999998776666554  699999999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE---e--
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV---H--  233 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~--  233 (380)
                      |... .+|++|+-|+.||||++...+....... ..-|+++++.|+|++.+.|+.+|.+++|+....+......   +  
T Consensus       419 PvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~  496 (712)
T KOG0283|consen  419 PVDD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK  496 (712)
T ss_pred             ccCC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence            9865 4899999999999999998776654433 3679999999999999999999999999988766554332   1  


Q ss_pred             ----cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc--cceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         234 ----NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF--RDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       234 ----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                          ...|+.+.+.|..+-     .+..+..+..+++|+..+..+...+.+..  ..-....|+.||++++++++|..|+
T Consensus       497 Kk~~~~rITG~Q~~p~~~~-----~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY  571 (712)
T KOG0283|consen  497 KKKQGKRITGLQFFPGDPD-----EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY  571 (712)
T ss_pred             ccccCceeeeeEecCCCCC-----eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence                226999998876543     45667789999999998777776665543  2345788999999999999999999


Q ss_pred             EEec
Q psy6984         308 LWNT  311 (380)
Q Consensus       308 iw~~  311 (380)
                      +|++
T Consensus       572 iW~~  575 (712)
T KOG0283|consen  572 IWKN  575 (712)
T ss_pred             EEeC
Confidence            9996

>KOG0305|consensus

Probab=100.00  E-value=1.4e-30  Score=226.45  Aligned_cols=278  Identities=21%  Similarity=0.363  Sum_probs=232.7

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR  100 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  100 (380)
                      -++|+..  +.+|.|.. ..|.+|+-.....     ......+.+.|+++.|+++|++|++|..+|.|.|||..+.+.+.
T Consensus       182 lldWss~--n~laValg-~~vylW~~~s~~v-----~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  182 LLDWSSA--NVLAVALG-QSVYLWSASSGSV-----TELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             HhhcccC--CeEEEEec-ceEEEEecCCCce-----EEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc
Confidence            3456633  46666654 5899998654321     11112237889999999999999999999999999999999999


Q ss_pred             eecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         101 RFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       101 ~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                      .+.. |...|-+++|.  +..+.+|+.|+.|..+|++..........+|...|+.+.|++++.  +|++|+.|+.+.|||
T Consensus       254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWD  329 (484)
T ss_pred             cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC--eeccCCCccceEecc
Confidence            9988 99999999998  678999999999999998765444334568999999999999865  799999999999999


Q ss_pred             CCCceeeEeeeCCccceEEEEEcC-CCCEEEEEc--CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeee
Q psy6984         180 LTNCKLKINHSGHTGYLNTVTVSP-DGSLCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDIS  256 (380)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  256 (380)
                      ....+....+..|...|.+++|+| ...+||+|+  .|+.|++||..++..+..+.....|+++.|++...-..    ..
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~----st  405 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELL----ST  405 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEE----Ee
Confidence            988888888999999999999999 566888864  69999999999999999999999999999999763222    22


Q ss_pred             eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         257 RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                      .+..+..+.+|.....+....+.+|...|..+++||||..+++|+.|.++++|+..+.
T Consensus       406 hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  406 HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            2334568899999998888899999999999999999999999999999999987653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.1e-30  Score=246.91  Aligned_cols=253  Identities=20%  Similarity=0.274  Sum_probs=199.6

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~   94 (380)
                      ...|.++.|++..+.+|++++.||+|++||+....     ....+.+|...|++++|+| ++.+|++|+.|+.|++||+.
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~  606 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN  606 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence            46789999998656899999999999999986432     2345678999999999996 78999999999999999999


Q ss_pred             CCceeeeecccCCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFS-VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      +++....+..+ ..+.++.|+ +++..+++|+.|+.|++||+...........+|...|.++.|.+ +  ..|++++.|+
T Consensus       607 ~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~--~~lvs~s~D~  682 (793)
T PLN00181        607 QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S--STLVSSSTDN  682 (793)
T ss_pred             CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C--CEEEEEECCC
Confidence            98888877654 679999995 57999999999999999998765432333457888999999963 2  3789999999


Q ss_pred             eEEEEeCCCc------eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcc
Q psy6984         174 MVKVWNLTNC------KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRS  247 (380)
Q Consensus       174 ~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~  247 (380)
                      +|++||++..      .....+.+|...+..+.++|++.+|++|+.|+.+++|+.....++..+...         ....
T Consensus       683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~---------~~~~  753 (793)
T PLN00181        683 TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK---------TIDP  753 (793)
T ss_pred             EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc---------cCCc
Confidence            9999999742      345567789999999999999999999999999999998765433222110         0000


Q ss_pred             cceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         248 FQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      .                      .+   .....+...|.+++|+|++.+|++|+.||.|++|++
T Consensus       754 ~----------------------~~---~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        754 V----------------------SG---LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             c----------------------cc---cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            0                      00   001122345889999999999999999999999974

>KOG0281|consensus

Probab=100.00  E-value=1.9e-32  Score=220.58  Aligned_cols=252  Identities=27%  Similarity=0.463  Sum_probs=202.6

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++.++...|.||+|.|.|+.+..   ..+++||.|.+|++||+...     .+..++.+|.+.|..+.|+  ..++++++
T Consensus       225 n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tg-----e~l~tlihHceaVLhlrf~--ng~mvtcS  294 (499)
T KOG0281|consen  225 NSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTG-----EPLNTLIHHCEAVLHLRFS--NGYMVTCS  294 (499)
T ss_pred             ccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCC-----chhhHHhhhcceeEEEEEe--CCEEEEec
Confidence            34567778999999999999874   48999999999999998653     3567788999999999997  46999999


Q ss_pred             CCCcEEEEECCCCc---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          84 WDKTLRLWDLAAGK---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        84 ~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      .|.+|.+||+....   ..+.+.+|..+|..+.|+  .++++++|.|+++++|++.+.... ....+|...|.|+.+.  
T Consensus       295 kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv-Rtl~gHkRGIAClQYr--  369 (499)
T KOG0281|consen  295 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV-RTLNGHKRGIACLQYR--  369 (499)
T ss_pred             CCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee-hhhhcccccceehhcc--
Confidence            99999999997643   334567999999999885  569999999999999997665443 3446899999999884  


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL  240 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~  240 (380)
                        ..++++|++|.+||+||+..+.+...+.||..-|.++.|+  .+.+++|++||+|++||+..+...     .++...+
T Consensus       370 --~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldp-----ra~~~~~  440 (499)
T KOG0281|consen  370 --DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDP-----RAPASTL  440 (499)
T ss_pred             --CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCC-----cccccch
Confidence              3488999999999999999999988899999999999995  578999999999999999765321     1111111


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                      |                                 ...+..|.+.|..+.|  |...+++++.|.+|-+||+..+
T Consensus       441 C---------------------------------l~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  441 C---------------------------------LRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             H---------------------------------HHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence            1                                 1122344556777887  5778999999999999998654

>KOG0973|consensus

Probab=100.00  E-value=3e-30  Score=236.00  Aligned_cols=288  Identities=23%  Similarity=0.350  Sum_probs=228.0

Q ss_pred             cceEEEEEccCCCEEEEEe--CCCcEEEEECCC------------CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy6984          65 HFISDIVLSSDGNYALSGS--WDKTLRLWDLAA------------GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI  130 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v  130 (380)
                      ..|..+..+|||..++||+  .|+.+.||+...            .+.+.....|.+.|.|+.|+|||++||+|+.|+.|
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v   93 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV   93 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence            3488999999999999999  999999998642            23345567899999999999999999999999999


Q ss_pred             EEEeCCC---c--------------ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCc
Q psy6984         131 KLWNTLA---H--------------CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT  193 (380)
Q Consensus       131 ~iwd~~~---~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  193 (380)
                      .+|+...   .              -+......+|...|..++|+|++.  +|++++.|++|-+|+.++.+....+.+|.
T Consensus        94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF~~~~vl~~H~  171 (942)
T KOG0973|consen   94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTFELLKVLRGHQ  171 (942)
T ss_pred             EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccceeeeeeeccc
Confidence            9998541   0              012233457999999999999754  89999999999999999998888999999


Q ss_pred             cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-------ecCceEEEEeecCcccceeeeeeeeeccccceEE
Q psy6984         194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-------HNDIITALCFSPNRSFQKIKLDISRTLQKSNLIL  266 (380)
Q Consensus       194 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (380)
                      +.|-.+.|+|-|+|||+-+.|+.|++|++.+-...+.+.       .......+.|||++.+......+-  .....+.+
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n--~~~~~~~I  249 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN--GGKSTIAI  249 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc--CCcceeEE
Confidence            999999999999999999999999999977654444432       234578899999998865433322  23445556


Q ss_pred             EEcCCceeeeeeeccccceeEEEEeec-----CC------------EEEEeeCCCcEEEEecccceeeeEeecccceEEE
Q psy6984         267 YPINHGKMETPFFSLFRDVLSVAFSVD-----NR------------QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVE  329 (380)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  329 (380)
                      .+-.+.+....+.+|..++.+++|+|-     .+            .+|+|+.|++|-+|.....+.+.++         
T Consensus       250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi---------  320 (942)
T KOG0973|consen  250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI---------  320 (942)
T ss_pred             EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---------
Confidence            666666777889999999999999873     12            5788999999999986433322211         


Q ss_pred             eeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         330 ELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                                .......|.+++|+|||..|+++|.||+|.+..++.
T Consensus       321 ----------~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  321 ----------HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ----------hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence                      112234578999999999999999999999987753

>KOG0308|consensus

Probab=100.00  E-value=5.5e-31  Score=228.01  Aligned_cols=345  Identities=20%  Similarity=0.346  Sum_probs=248.7

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc-cccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC--c
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP-QKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG--K   97 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~   97 (380)
                      .+...+..+++|+|||.||.|++|++..+......+ ...++.|.+.|++++...+++.|+++|.|.+|++|+...+  -
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            444555556789999999999999987543322222 4567899999999999999999999999999999999876  4


Q ss_pred             eeeeecccCCCeEEEEE-eCCCCEEEEEeCCCcEEEEeCCCcce-----E-----EEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          98 TTRRFEDHTKDVLSVAF-SVDNRQIVSSSRDKTIKLWNTLAHCK-----F-----TIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        98 ~~~~~~~h~~~v~~~~~-~~~~~~~~s~~~d~~v~iwd~~~~~~-----~-----~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      +...+..|...|.|++. .++...+|+|+-|+.|.+||+.....     .     .....++.+.|.+++.++++  ..+
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~--t~i  186 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG--TII  186 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc--eEE
Confidence            66778899999999999 78889999999999999999865422     0     11122677889999999876  378


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecC
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN  245 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~  245 (380)
                      ++|+.++.+++||.++++....+.||...|..+..++||..+++++.||.|++||+...+.+.++ .|.+.+-++..+|+
T Consensus       187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS  266 (735)
T ss_pred             EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC
Confidence            99999999999999999999999999999999999999999999999999999999988888877 46777777776654


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK  325 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  325 (380)
                      ...      +..+..+++++..++........+....-+|..+..+.....+=.++.|+.|+-|.......+.+..-.-.
T Consensus       267 f~~------vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~  340 (735)
T KOG0308|consen  267 FTH------VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDF  340 (735)
T ss_pred             cce------EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCc
Confidence            322      22233456666666655433334444445566666664444444556799999997644332221100000


Q ss_pred             eEEEeeCccccc-----ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         326 KMVEELRPDVVS-----QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       326 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                       .....+.....     ......+..+...+.-.|.|++.|-...|.+.+||+-
T Consensus       341 -~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl  393 (735)
T KOG0308|consen  341 -FSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL  393 (735)
T ss_pred             -ccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence             00000000000     0111122233344455688999999999999999985

>KOG0316|consensus

Probab=99.98  E-value=2e-30  Score=198.30  Aligned_cols=243  Identities=23%  Similarity=0.389  Sum_probs=198.1

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..+.+|+..|..+.|+-||+|.++++.|..|++|+...+.+++++.+|..+|.+++.+.|...+++++.|+.+.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc--eeeEeeeCCccceEEEEEcCCCCEEEEEcCCC
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC--KLKINHSGHTGYLNTVTVSPDGSLCASGGKDM  215 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  215 (380)
                      ++....+ .+|...|+.++|+...  .++++|+.|..+++||.++.  ++++.+......|.++.++  +..+++|+.||
T Consensus        91 Gkv~Rr~-rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG  165 (307)
T KOG0316|consen   91 GKVDRRF-RGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG  165 (307)
T ss_pred             Ceeeeec-ccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence            8766554 4899999999999764  48999999999999999864  3444444556678877765  56789999999


Q ss_pred             cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC
Q psy6984         216 NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR  295 (380)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  295 (380)
                      +++.||++.|+...-                                                 ....+|+++.|++|++
T Consensus       166 tvRtydiR~G~l~sD-------------------------------------------------y~g~pit~vs~s~d~n  196 (307)
T KOG0316|consen  166 TVRTYDIRKGTLSSD-------------------------------------------------YFGHPITSVSFSKDGN  196 (307)
T ss_pred             cEEEEEeecceeehh-------------------------------------------------hcCCcceeEEecCCCC
Confidence            999999987753200                                                 0124688999999999


Q ss_pred             EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCc--eEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         296 QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM--CLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       296 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      .++.++.|+++++-|-.++           +++...         ..|..+  -..++++....++++|++||.|.+||+
T Consensus       197 c~La~~l~stlrLlDk~tG-----------klL~sY---------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  197 CSLASSLDSTLRLLDKETG-----------KLLKSY---------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             EEEEeeccceeeecccchh-----------HHHHHh---------cccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence            9999999999999864333           332211         112211  235678888899999999999999997


Q ss_pred             e
Q psy6984         374 S  374 (380)
Q Consensus       374 ~  374 (380)
                      .
T Consensus       257 v  257 (307)
T KOG0316|consen  257 V  257 (307)
T ss_pred             c
Confidence            5

>KOG0277|consensus

Probab=99.98  E-value=1.9e-30  Score=200.58  Aligned_cols=285  Identities=22%  Similarity=0.348  Sum_probs=215.1

Q ss_pred             EEEEeCCCCCCeEEEee-------CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEE
Q psy6984          20 TQIATNPKFPDTILSCS-------RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLW   91 (380)
Q Consensus        20 ~~i~~~~~~~~~l~t~~-------~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vw   91 (380)
                      .++.|+|-.+++||.+.       ..|.+.+-++....   ++....-..-.+.+..++|+++ .+.+++++-||++++|
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~---gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK---GIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLF   88 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCC---CeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEe
Confidence            46778887777766543       46788888775221   1222222234567899999986 4678899999999999


Q ss_pred             ECCC-CceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          92 DLAA-GKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        92 d~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      |+.. .+++..++.|..+|.++.|++ +.+.++++|.|++|++|+......... ..+|...|...+|+|...+ +++++
T Consensus        89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-f~gh~~~Iy~a~~sp~~~n-lfas~  166 (311)
T KOG0277|consen   89 DLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-FNGHNSCIYQAAFSPHIPN-LFASA  166 (311)
T ss_pred             ccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-ecCCccEEEEEecCCCCCC-eEEEc
Confidence            9753 467888999999999999987 556788899999999999776665554 4589999999999997654 88999


Q ss_pred             eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      +.|+++++||++.......+..|...|.++.|+. +.+.+++|+.|+.|+.||++.-+..                    
T Consensus       167 Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--------------------  226 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--------------------  226 (311)
T ss_pred             cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc--------------------
Confidence            9999999999988665666888999999999998 6678999999999999999764311                    


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEEEecccceeeeEeecccceE
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM  327 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~  327 (380)
                                                ...+.+|.-.|..++|||.. ..|+|++.|-++||||...+.          ..
T Consensus       227 --------------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d----------s~  270 (311)
T KOG0277|consen  227 --------------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD----------SA  270 (311)
T ss_pred             --------------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch----------hh
Confidence                                      01122344457778888864 578999999999999864221          11


Q ss_pred             EEeeCcccccccCCCCCCceEEEEEecC-CCEEEEEeeCCeEEEEEee
Q psy6984         328 VEELRPDVVSQSTKADPPMCLSLAWSTD-GQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~g~~dg~v~iw~~~  374 (380)
                      +         .....|...+..+.||+- +.++|+.+=|..+.||+..
T Consensus       271 ~---------e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p~  309 (311)
T KOG0277|consen  271 I---------ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNPG  309 (311)
T ss_pred             h---------hhhhccceEEeccccccccCceeeecccccceeeeccc
Confidence            1         112235556778889985 6678888899999999864

>KOG0289|consensus

Probab=99.98  E-value=2.2e-30  Score=214.21  Aligned_cols=278  Identities=21%  Similarity=0.339  Sum_probs=234.0

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      ..|+++...|. .+.++||+.|..+.++|.+.+.     ....++||...|+.+.++|+...+++++.|..|+||.....
T Consensus       220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q-----~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQ-----ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CCeeEEeecCC-CCcceecCCCCceEEEecchhh-----hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            57899998887 5789999999999999876543     34568999999999999999999999999999999999887


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCC-CcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      ........|..+|+.+..+|.|.+|++++.|++.-+.|...+..+...... ..-.+++++|+|++  .+|.+|..|+.|
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg--Lifgtgt~d~~v  371 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG--LIFGTGTPDGVV  371 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--eEEeccCCCceE
Confidence            777777899999999999999999999999999999998887776655432 22348899999986  478899999999


Q ss_pred             EEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC--ceEEEEeecCcccceeee
Q psy6984         176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND--IITALCFSPNRSFQKIKL  253 (380)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~  253 (380)
                      ++||+.+......+++|.++|.+++|+.+|-++++++.|+.|++||++.-+...++..++  .+.+++|.+.+.+..+. 
T Consensus       372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-  450 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-  450 (506)
T ss_pred             EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-
Confidence            999999988888999999999999999999999999999999999999888777776544  48999999988875543 


Q ss_pred             eeeeeccccceEEEEcC----CceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         254 DISRTLQKSNLILYPIN----HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       254 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                             ...+++|.+.    .......+..+.+....+.|....++++++|.|..++++.
T Consensus       451 -------g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  451 -------GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             -------cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence                   3455565554    2333444555566788899999999999999999888763

>KOG0301|consensus

Probab=99.98  E-value=6e-30  Score=223.16  Aligned_cols=283  Identities=27%  Similarity=0.430  Sum_probs=221.9

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEE-EEEcc-CCCEEEEE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISD-IVLSS-DGNYALSG   82 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~s~   82 (380)
                      ..+|.+++.||...|..++..+.  ..++++|.||++++|+.....  + +....+.+|.+.|.. +++.+ ++-++++|
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~--~-l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g   77 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQ--Y-LETHAFEGPKGFIANSICYAESDKGRLVVG   77 (745)
T ss_pred             cceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcc--c-ccceecccCcceeeccceeccccCcceEee
Confidence            46799999999999999887754  589999999999999864322  1 233456788888877 88775 55679999


Q ss_pred             eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      +.|+.|.+|.+....+...+.+|...|.+++...++. +++||.|.++++|... +..  ...++|+..|+.+...|.. 
T Consensus        78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-~l~--~~l~gH~asVWAv~~l~e~-  152 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-ELV--YSLQGHTASVWAVASLPEN-  152 (745)
T ss_pred             cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch-hhh--cccCCcchheeeeeecCCC-
Confidence            9999999999999999999999999999999888777 9999999999999532 222  2246899999999998864 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                        .++||+.|.+||+|.-  ++....+.+|...|..+++-|++ .|++++.||.|++|++ +++.+...           
T Consensus       153 --~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~-----------  215 (745)
T KOG0301|consen  153 --TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM-----------  215 (745)
T ss_pred             --cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-----------
Confidence              5899999999999976  45667788999999999998865 5679999999999998 44443322           


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL  322 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  322 (380)
                                                          .+|..-+++++..+++..++|+++|++++||+..          
T Consensus       216 ------------------------------------~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~----------  249 (745)
T KOG0301|consen  216 ------------------------------------HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD----------  249 (745)
T ss_pred             ------------------------------------eccceEEEEEEecCCCCeEEEecCCceEEEeecC----------
Confidence                                                2333345566667788999999999999999742          


Q ss_pred             ccceEEEeeCcccccccCCCCCC-ceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         323 ETKKMVEELRPDVVSQSTKADPP-MCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                         .+...+.          ++. .|+++..-++|+ |++|++||.||||..+
T Consensus       250 ---e~~q~I~----------lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  250 ---ECVQVIT----------LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ---ceEEEEe----------cCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence               1111111          122 366777777788 5668899999999876

>KOG1539|consensus

Probab=99.98  E-value=6.5e-29  Score=220.91  Aligned_cols=335  Identities=21%  Similarity=0.287  Sum_probs=248.1

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCE-EEE
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNY-ALS   81 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s   81 (380)
                      ..+..++++++++...|+++.-.|. =+.++.|-.+|+|.++++..+.....     ++.-.+.|+.+.|..||+. +++
T Consensus       189 vrt~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~s-----Fk~d~g~VtslSFrtDG~p~las  262 (910)
T KOG1539|consen  189 VRTGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMS-----FKQDWGRVTSLSFRTDGNPLLAS  262 (910)
T ss_pred             eccCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEE-----EEccccceeEEEeccCCCeeEEe
Confidence            3456689999999999999999998 47899999999999999987653322     2222478999999999975 567


Q ss_pred             EeCCCcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEE---------------------------
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLW---------------------------  133 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw---------------------------  133 (380)
                      |...|.+.+||++..+...... .|.+.|....|-|....+++++.|+.+++|                           
T Consensus       263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf  342 (910)
T KOG1539|consen  263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF  342 (910)
T ss_pred             ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence            7778999999998766554443 454555555555555555555555555544                           


Q ss_pred             --------------------eCCCc-------c--------eEE------------------------------------
Q psy6984         134 --------------------NTLAH-------C--------KFT------------------------------------  142 (380)
Q Consensus       134 --------------------d~~~~-------~--------~~~------------------------------------  142 (380)
                                          ++...       .        +..                                    
T Consensus       343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~  422 (910)
T KOG1539|consen  343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR  422 (910)
T ss_pred             eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence                                21000       0        000                                    


Q ss_pred             ---Eee----------CCC------cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee---eCCccceEEEE
Q psy6984         143 ---IVE----------DGH------SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH---SGHTGYLNTVT  200 (380)
Q Consensus       143 ---~~~----------~~~------~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~i~~~~  200 (380)
                         .+.          -.+      ...+.+++.++.++  +.+.|.+.|.|-+|++.++.....+   +.|.++|..++
T Consensus       423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN--F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla  500 (910)
T KOG1539|consen  423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN--FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA  500 (910)
T ss_pred             eEEEEeccCcccccEEecCccccccCcceEEEEEeccCc--eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE
Confidence               000          001      12355666666554  6778999999999999998766655   57999999999


Q ss_pred             EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec
Q psy6984         201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS  280 (380)
Q Consensus       201 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (380)
                      .+.-++.+++++.+|.+++||......+..+.....+..+..+-.....++      ...+..+.+++..+.++.+.+.+
T Consensus       501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~------~~ddf~I~vvD~~t~kvvR~f~g  574 (910)
T KOG1539|consen  501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI------ALDDFSIRVVDVVTRKVVREFWG  574 (910)
T ss_pred             ecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh------hcCceeEEEEEchhhhhhHHhhc
Confidence            999999999999999999999998887777777777776665544333222      23567789999999999999999


Q ss_pred             cccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEE
Q psy6984         281 LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF  360 (380)
Q Consensus       281 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  360 (380)
                      |...|++++|||||++|++++.|++||+||+.++..+..           +..          ...|.++.|||+|.+||
T Consensus       575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~-----------~~v----------d~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG-----------LLV----------DSPCTSLSFSPNGDFLA  633 (910)
T ss_pred             cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee-----------Eec----------CCcceeeEECCCCCEEE
Confidence            999999999999999999999999999998755544433           322          12467899999999999


Q ss_pred             EEeeC-CeEEEEE
Q psy6984         361 AGYSD-NTIRVWQ  372 (380)
Q Consensus       361 ~g~~d-g~v~iw~  372 (380)
                      |...| ..|.+|-
T Consensus       634 T~Hvd~~gIylWs  646 (910)
T KOG1539|consen  634 TVHVDQNGIYLWS  646 (910)
T ss_pred             EEEecCceEEEEE
Confidence            99988 5799994

>KOG0640|consensus

Probab=99.98  E-value=3.1e-30  Score=204.93  Aligned_cols=294  Identities=19%  Similarity=0.290  Sum_probs=224.1

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCC------------CCCCcc-cccccccCCCcceEEEEEccC
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTR------------DDTNYG-VPQKRLKGHSHFISDIVLSSD   75 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~------------~~~~~~-~~~~~~~~h~~~v~~~~~~~~   75 (380)
                      ...+..|.+++.+.+|+|+ +.+++|||.|-+|++.|+++            .+.... ....++..|.+.|+++.|+|-
T Consensus       105 t~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            3456789999999999998 78999999999999999872            011111 112356789999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceee--eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE--eeCCCcCc
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI--VEDGHSDW  151 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~--~~~~~~~~  151 (380)
                      ...|++|+.|++|+++|...-...+  ++-....+|.+++|+|.|.+++.|....++++||+.+.+.+..  -.+.|+..
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            9999999999999999997543222  2223456899999999999999999999999999887655433  23578899


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-eCCc-cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-SGHT-GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      |+++.+++++.  +.++++.||.|++||--+.+++..+ ..|. ..|++..|..+|+++++.+.|..+++|.+.+++.+.
T Consensus       264 i~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  264 ITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             eeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence            99999999764  7899999999999998776665443 2453 479999999999999999999999999999999887


Q ss_pred             EEEecC------ceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee-eeeccccceeEEEEeecCCEEEEeeC
Q psy6984         230 TLVHND------IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET-PFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       230 ~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      ......      .-+...|+-...|.     +........+.-|+..+..... -..+|.+.+..+..||.+..|++|+.
T Consensus       342 ~YtGAg~tgrq~~rtqAvFNhtEdyV-----l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd  416 (430)
T KOG0640|consen  342 EYTGAGTTGRQKHRTQAVFNHTEDYV-----LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD  416 (430)
T ss_pred             EEecCCcccchhhhhhhhhcCccceE-----EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence            654211      11122222222221     1112234566778776654332 33577788999999999999999999


Q ss_pred             CCcEEEEe
Q psy6984         303 DKTIKLWN  310 (380)
Q Consensus       303 dg~v~iw~  310 (380)
                      |..+|+|-
T Consensus       417 D~raRFWy  424 (430)
T KOG0640|consen  417 DFRARFWY  424 (430)
T ss_pred             cceeeeee
Confidence            99999994

>KOG0299|consensus

Probab=99.98  E-value=1.1e-29  Score=211.53  Aligned_cols=297  Identities=25%  Similarity=0.387  Sum_probs=223.3

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-c-----------ccccccc-cCCCcceEEEEEccC
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-Y-----------GVPQKRL-KGHSHFISDIVLSSD   75 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~-----------~~~~~~~-~~h~~~v~~~~~~~~   75 (380)
                      ...+..|.-.|++++++|+ .++.++++.||+|.-|++...... +           ..+.+.. ++|...+.++++++|
T Consensus       135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD  213 (479)
T ss_pred             ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence            3566789999999999998 689999999999999998654321 1           1122222 488889999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEE
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCV  155 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  155 (380)
                      |+||++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+.+++|++..-.- .....+|.+.|..|
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGI  292 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeee
Confidence            99999999999999999999999999999999999999988888999999999999998643222 12234788888887


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND  235 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  235 (380)
                      .....  ...+..|+.|+++++|++.... ...+.++.+.+.|++|-. ...|++|+.+|.|.+|++...+++.......
T Consensus       293 daL~r--eR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH  368 (479)
T KOG0299|consen  293 DALSR--ERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAH  368 (479)
T ss_pred             chhcc--cceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccc
Confidence            76543  3355567799999999995533 345677888899999865 4578899999999999998888776543211


Q ss_pred             ceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         236 IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       236 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      .+.     |..                              ....+..-|++++..|...++++|+.+|.||+|.+.++.
T Consensus       369 gv~-----~~~------------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  369 GVI-----PEL------------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             ccc-----CCc------------------------------cccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence            110     000                              000111347789999999999999999999999876542


Q ss_pred             eeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe
Q psy6984         316 KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY  363 (380)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~  363 (380)
                      .       ....+..+          .-.+.|.+++|+++|+.|++|-
T Consensus       414 r-------~i~~l~~l----------s~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  414 R-------AINLLYSL----------SLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             c-------ccceeeec----------ccccEEEEEEEccCCCEEEEec
Confidence            1       11112211          1345788999999999777653

>KOG0647|consensus

Probab=99.97  E-value=3.9e-29  Score=197.88  Aligned_cols=282  Identities=22%  Similarity=0.341  Sum_probs=206.7

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      -++.|.+|+|+|....+++++|.||+||+|++.....   ...+....|..+|.+++|+.||..+++|+.|+.+++||+.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCc---ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            4678999999996556777899999999999875321   1235567899999999999999999999999999999999


Q ss_pred             CCceeeeecccCCCeEEEEEeCCCC--EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFSVDNR--QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~~~~~--~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      +++ ...+..|.++|..+.|-+...  .|+|||.|+++++||++.......+..  .+.+.++..    ..++++.+..+
T Consensus       103 S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--PeRvYa~Dv----~~pm~vVata~  175 (347)
T KOG0647|consen  103 SGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--PERVYAADV----LYPMAVVATAE  175 (347)
T ss_pred             CCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec--cceeeehhc----cCceeEEEecC
Confidence            984 455678999999999976554  799999999999999987666554432  334555443    34578888889


Q ss_pred             CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccce
Q psy6984         173 RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQK  250 (380)
Q Consensus       173 ~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  250 (380)
                      +.|.+|++++......  ...-.-.+.+++..++....+.|+-.|++-+..+..+.+...+...                
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk----------------  239 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK----------------  239 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE----------------
Confidence            9999999977543221  1122346788998888888899999999999988765332211100                


Q ss_pred             eeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEe
Q psy6984         251 IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE  330 (380)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  330 (380)
                          -.+.....+-.+|                .|.+++|+|....|+|+|.||++-+||.....++             
T Consensus       240 ----CHR~~~~~~~~VY----------------aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL-------------  286 (347)
T KOG0647|consen  240 ----CHRSTNSVNDDVY----------------AVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL-------------  286 (347)
T ss_pred             ----EeccCCCCCCceE----------------EecceEeecccceEEEecCCceEEEecchhhhhh-------------
Confidence                0000000000122                3568999999999999999999999985332211             


Q ss_pred             eCcccccccCCCCCCceEEEEEecCCCEEEEE
Q psy6984         331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG  362 (380)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g  362 (380)
                             ...+.++..|.+++|+.+|.++|-+
T Consensus       287 -------k~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  287 -------KTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             -------hccCcCCCccceeEecCCCCEEEEE
Confidence                   1234566778899999999998743

>KOG0275|consensus

Probab=99.97  E-value=7.1e-31  Score=209.91  Aligned_cols=286  Identities=23%  Similarity=0.355  Sum_probs=234.1

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccc---ccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGV---PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      |...-+-|..|+|+ +.+|++||.||-|.||+.........+   .+..+.-+.+.|.|+.|+.|...|++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            55667888999998 799999999999999998654322111   12345668889999999999999999999999999


Q ss_pred             EECCCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          91 WDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        91 wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      |.+.+|++++.+. .|...|+|+.|+.|+..+++++.|.++++--+..+..+.. ..+|+..|+.+.|.+++.  .++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-frGHsSyvn~a~ft~dG~--~iisa  366 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-FRGHSSYVNEATFTDDGH--HIISA  366 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHH-hcCccccccceEEcCCCC--eEEEe
Confidence            9999999999986 8999999999999999999999999999998766654433 358999999999999875  68999


Q ss_pred             eCCCeEEEEeCCCceeeEeee--CCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEe----cCceEEEEe
Q psy6984         170 GWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVH----NDIITALCF  242 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~  242 (380)
                      +.||+|++|+.++.++...++  +...+|+++..-| +.+.++++...+++++-++. |+.+..+..    ...-.+.+.
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l  445 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL  445 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence            999999999999877665443  3455788888777 55689999999999999874 666666642    223345567


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      +|.+.+.-      ....++-++.+.+..|+++..+.-|...+..++.+|..+.+++-++||.+++|.
T Consensus       446 SpkGewiY------cigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  446 SPKGEWIY------CIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cCCCcEEE------EEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            88876632      222456678888999999999999999999999999999999999999999994

>KOG0313|consensus

Probab=99.97  E-value=1.7e-29  Score=205.75  Aligned_cols=251  Identities=27%  Similarity=0.445  Sum_probs=197.5

Q ss_pred             eEEeEEecCcccceEEEEeCCCCC--CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~--~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      .+....+.||.++|.+++|...++  ..|+++|.|.++++|..+.+.... ...+..+||...|.++...++|..+++|+
T Consensus       134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~-~~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV-KALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh-hHHhHhcccccceeEEEecCCCCeEEeec
Confidence            456788899999999888765532  359999999999999987543221 12334569999999999999999999999


Q ss_pred             CCCcEEEEECCC-------------------------CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          84 WDKTLRLWDLAA-------------------------GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        84 ~d~~i~vwd~~~-------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      .|.+|.||+..+                         +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+..+
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence            999999999321                         123445789999999999987 778999999999999998776


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce---eeEeeeCCccceEEEEEcCCCC-EEEEEcCC
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK---LKINHSGHTGYLNTVTVSPDGS-LCASGGKD  214 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d  214 (380)
                      .....+.  -...+.|+.++|.  ..+|++|+.|..+|+||.+++.   ....+.+|...|.++.|+|... .|++|+.|
T Consensus       292 ~~~~~~~--~~ksl~~i~~~~~--~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D  367 (423)
T KOG0313|consen  292 GLKSTLT--TNKSLNCISYSPL--SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD  367 (423)
T ss_pred             cceeeee--cCcceeEeecccc--cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC
Confidence            5544332  2345889999985  3489999999999999998753   3456789999999999999655 68899999


Q ss_pred             CcEEEEECCCCc-EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeec
Q psy6984         215 MNAMLWDLNDGK-HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD  293 (380)
Q Consensus       215 ~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  293 (380)
                      +++++||+++.+ ++..+                                               ..|...|.++.|+ +
T Consensus       368 ~t~klWDvRS~k~plydI-----------------------------------------------~~h~DKvl~vdW~-~  399 (423)
T KOG0313|consen  368 NTVKLWDVRSTKAPLYDI-----------------------------------------------AGHNDKVLSVDWN-E  399 (423)
T ss_pred             CeEEEEEeccCCCcceee-----------------------------------------------ccCCceEEEEecc-C
Confidence            999999998765 33222                                               1223446677775 5


Q ss_pred             CCEEEEeeCCCcEEEEe
Q psy6984         294 NRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~  310 (380)
                      +.+++|||.|.+++++.
T Consensus       400 ~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  400 GGLIVSGGADNKLRIFK  416 (423)
T ss_pred             CceEEeccCcceEEEec
Confidence            67899999999999985

>KOG1446|consensus

Probab=99.97  E-value=5.5e-28  Score=192.89  Aligned_cols=293  Identities=20%  Similarity=0.278  Sum_probs=220.0

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-   84 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-   84 (380)
                      ++....++.-++.|++|.++++ ++++++++.|.++++||......     ...+..++-.+..++|....+.++.++. 
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~-----~~ti~skkyG~~~~~Fth~~~~~i~sStk   77 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQ-----VKTINSKKYGVDLACFTHHSNTVIHSSTK   77 (311)
T ss_pred             cccccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCce-----eeEeecccccccEEEEecCCceEEEccCC
Confidence            3445566677889999999998 78999999999999999865442     3344556667888888877777776665 


Q ss_pred             -CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          85 -DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        85 -d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                       |..|+..++.+++.++.+.+|...|..++.+|-++.+++++.|++|++||++.......+....   -..++|.|.+  
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~G--  152 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEG--  152 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCC--
Confidence             8899999999999999999999999999999999999999999999999998655554443322   2467898864  


Q ss_pred             CEEEEEeCCCeEEEEeCCCce--e--eEeee-CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCK--L--KINHS-GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~--~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      .+++++.....|++||++...  .  ..... +.....+.+.|+|||++++.+...+.+++.|.-+|..+..+...    
T Consensus       153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~----  228 (311)
T KOG1446|consen  153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY----  228 (311)
T ss_pred             cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec----
Confidence            466666666699999998641  1  11222 34567899999999999999999999999998888765554311    


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                           |..               ++                    --.+..|+||++++++|+.||+|.+|++..+.+..
T Consensus       229 -----~~~---------------~~--------------------~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  229 -----PNA---------------GN--------------------LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             -----cCC---------------CC--------------------cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence                 100               00                    01357899999999999999999999986665543


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      .+...                   ....+.++.|+|.-.+++++  +-.+.+|-..
T Consensus       269 ~~~~~-------------------~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  269 VLRGP-------------------NGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             EecCC-------------------CCCCccccccCCceeeeeec--CceEEEEecc
Confidence            32111                   23345567799988877764  5668888654

>KOG0973|consensus

Probab=99.97  E-value=6.3e-29  Score=227.39  Aligned_cols=295  Identities=22%  Similarity=0.306  Sum_probs=225.7

Q ss_pred             Cc-ccceEEEEeCCCCCCeEEEee--CCCeEEEeecCCCC-------CCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984          14 GH-NGWVTQIATNPKFPDTILSCS--RDNTLIIWKLTRDD-------TNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus        14 ~h-~~~v~~i~~~~~~~~~l~t~~--~dg~v~vw~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      +| ...|.+|+.+|+ +..++||+  .||.+++|+.+.-.       ............|...|+|+.|+|||++||+|+
T Consensus        10 ~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             ccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            45 456999999998 78999999  99999999975321       111112334568999999999999999999999


Q ss_pred             CCCcEEEEECCC----------C--------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984          84 WDKTLRLWDLAA----------G--------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        84 ~d~~i~vwd~~~----------~--------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~  145 (380)
                      .|+.|.||+...          |        +....+.+|...|.+++|+|++.++++++.|++|.+|+..+- ......
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl  167 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVL  167 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeee
Confidence            999999999872          0        245667899999999999999999999999999999998776 334445


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC------ccceEEEEEcCCCCEEEEEc----CCC
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH------TGYLNTVTVSPDGSLCASGG----KDM  215 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~----~d~  215 (380)
                      .+|...|..+.|.|-++  +|++-+.|++|++|++.+........++      ......+.|+|||.+|++..    .-.
T Consensus       168 ~~H~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             ecccccccceEECCccC--eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence            68999999999999876  7999999999999998775544443332      33577899999999998753    234


Q ss_pred             cEEEEECCCCcEE-EEEEecCceEEEEeecCc---ccc--------eeeeeeeeeccccceEEEEcCCceeeeeeecc-c
Q psy6984         216 NAMLWDLNDGKHL-HTLVHNDIITALCFSPNR---SFQ--------KIKLDISRTLQKSNLILYPINHGKMETPFFSL-F  282 (380)
Q Consensus       216 ~i~i~d~~~~~~~-~~~~~~~~i~~~~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  282 (380)
                      .+.|.+-.+-+.- ..+.|..++..++|+|.-   +..        ...+-.+...++..+.+|.+...+........ .
T Consensus       246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~  325 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN  325 (942)
T ss_pred             eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence            6777776555533 344688999999999841   111        11123455677889999988554433222222 2


Q ss_pred             cceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                      ..|.+++|+|||..|+.||.||+|.+..+.
T Consensus       326 ~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  326 KSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             CceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            479999999999999999999999999864

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=1.9e-28  Score=221.61  Aligned_cols=246  Identities=20%  Similarity=0.297  Sum_probs=182.5

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc---ccccccccCCCcceEEEEEccCCCE-EEEEe
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY---GVPQKRLKGHSHFISDIVLSSDGNY-ALSGS   83 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~   83 (380)
                      ....+.+|.+.|.+++|+|..+++|+||+.||+|++|++.......   ..+...+.+|...|.+++|+|++.. |++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            4567899999999999999767899999999999999987432110   1123356789999999999999876 57899


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEE-----EEc
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCV-----RFS  158 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~-----~~~  158 (380)
                      .|+.|+|||+.+++....+. |...|.+++|+|+|.++++++.|+.|++||+++...... ..+|...+.+.     .|+
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t-l~gH~g~~~s~~v~~~~fs  223 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS-FHIHDGGKNTKNIWIDGLG  223 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE-EecccCCceeEEEEeeeEc
Confidence            99999999999988777665 567899999999999999999999999999987665543 34676654333     333


Q ss_pred             cCCCCCEEEEEeCCC----eEEEEeCCCc-eeeEee--eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EE
Q psy6984         159 PNHQNPIIVSAGWDR----MVKVWNLTNC-KLKINH--SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH--LH  229 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~----~v~iwd~~~~-~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~  229 (380)
                      +++  .++++++.|+    +|++||+++. +.....  ..+.+.+...-..++|.++++|+.|+.|++|++..+..  +.
T Consensus       224 ~d~--~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~  301 (568)
T PTZ00420        224 GDD--NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN  301 (568)
T ss_pred             CCC--CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence            443  4688877664    7999999853 333222  22233333343455688999999999999999977642  22


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeee
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISR  257 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~  257 (380)
                      .+.+..+...++|.|........+++.+
T Consensus       302 ~~~s~~p~~g~~f~Pkr~~dv~~cEi~R  329 (568)
T PTZ00420        302 EYKSCSPFRSFGFLPKQICDVYKCEIGR  329 (568)
T ss_pred             ccccCCCccceEEccccccCchhhhHhH
Confidence            2345677889999998765555444443

>KOG1063|consensus

Probab=99.97  E-value=9e-29  Score=215.83  Aligned_cols=352  Identities=20%  Similarity=0.304  Sum_probs=253.1

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCC--CeEEEeeCCCeEEEeecCCCCCC-------------------------cccc-
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTN-------------------------YGVP-   56 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~--~~l~t~~~dg~v~vw~~~~~~~~-------------------------~~~~-   56 (380)
                      ......+|.||.++|.+|+|....+  -+++++|.|..||+|++...+..                         +.+. 
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            4567889999999999999987533  36889999999999998543200                         0000 


Q ss_pred             cccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCcee-------eeecccCCCeEEEEEeCCCCEEEEEeCCCc
Q psy6984          57 QKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTT-------RRFEDHTKDVLSVAFSVDNRQIVSSSRDKT  129 (380)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-------~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~  129 (380)
                      ...+.||.+.|+++.|+|.+..|++++.|.++.+|...+..-+       ..+.+........-|+|+++.+++-+..|.
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence            1235699999999999999999999999999999987654211       122233445788899999999999999999


Q ss_pred             EEEEeCCC--cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee----eEeeeCCccceEEEEEcC
Q psy6984         130 IKLWNTLA--HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL----KINHSGHTGYLNTVTVSP  203 (380)
Q Consensus       130 v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~  203 (380)
                      .++|....  .........+|.+.|..++|+|.+.  +|++.+.|.+-|+|---..+.    ....+-|...++|+++-+
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe--flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE--FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN  417 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCC--EEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence            99997222  2233344569999999999999765  899999999999986542111    112234666788999887


Q ss_pred             CCCEEEEEcCCCcEEEEECCC----------C---------------------------------cE----EE-------
Q psy6984         204 DGSLCASGGKDMNAMLWDLND----------G---------------------------------KH----LH-------  229 (380)
Q Consensus       204 ~~~~l~~~~~d~~i~i~d~~~----------~---------------------------------~~----~~-------  229 (380)
                      ....|++|.....+++|+...          +                                 ..    .+       
T Consensus       418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence            666788888888888887521          0                                 00    00       


Q ss_pred             -----------------------EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccccee
Q psy6984         230 -----------------------TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL  286 (380)
Q Consensus       230 -----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (380)
                                             .+.|...+.+++.+|++.+.+-.+... ...-.-+++|+...-+....+..|.-.|+
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~-~~ehAvI~lw~t~~W~~~~~L~~HsLTVT  576 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSS-LKEHAVIRLWNTANWLQVQELEGHSLTVT  576 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhC-CccceEEEEEeccchhhhheecccceEEE
Confidence                                   001334466666666655433222111 11234567888887777777888989999


Q ss_pred             EEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC
Q psy6984         287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN  366 (380)
Q Consensus       287 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg  366 (380)
                      .++|||||++|++.|+|+++.+|+...+..            .+.+    -...+.|...|.++.|+||++++||+|+|.
T Consensus       577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~------------~e~~----fa~~k~HtRIIWdcsW~pde~~FaTaSRDK  640 (764)
T KOG1063|consen  577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIK------------DEFR----FACLKAHTRIIWDCSWSPDEKYFATASRDK  640 (764)
T ss_pred             EEEECCCCcEEEEeecCceEEeeeeecccc------------hhhh----hccccccceEEEEcccCcccceeEEecCCc
Confidence            999999999999999999999997422111            0111    112456777889999999999999999999


Q ss_pred             eEEEEEeee
Q psy6984         367 TIRVWQVSV  375 (380)
Q Consensus       367 ~v~iw~~~~  375 (380)
                      +|+||....
T Consensus       641 ~VkVW~~~~  649 (764)
T KOG1063|consen  641 KVKVWEEPD  649 (764)
T ss_pred             eEEEEeccC
Confidence            999998753

>KOG0640|consensus

Probab=99.97  E-value=1.5e-29  Score=201.08  Aligned_cols=270  Identities=22%  Similarity=0.329  Sum_probs=204.8

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC------------C------ceeeeecccCCCeEEEEEeCCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA------------G------KTTRRFEDHTKDVLSVAFSVDNR  119 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------------~------~~~~~~~~h~~~v~~~~~~~~~~  119 (380)
                      ..+..|+..+.+.+|++||.++++|+.|.+|+|.|+..            +      -.++++-.|..+|.++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            34678999999999999999999999999999999851            1      13566778999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcceE-EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe---eeCCccc
Q psy6984         120 QIVSSSRDKTIKLWNTLAHCKF-TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN---HSGHTGY  195 (380)
Q Consensus       120 ~~~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~  195 (380)
                      .|++|++|++|++||..+.... ..........|.++.|+|.+.  +|+.|..-.++++||+++.++...   ...|.+.
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a  263 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA  263 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence            9999999999999996542111 011112345799999999865  788888889999999998776543   2468899


Q ss_pred             eEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceee
Q psy6984         196 LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME  275 (380)
Q Consensus       196 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (380)
                      |+++.+++.|++.++|+.||.|++||--+++.+.++...                                    ++   
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A------------------------------------H~---  304 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA------------------------------------HG---  304 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh------------------------------------cC---
Confidence            999999999999999999999999997666655443200                                    00   


Q ss_pred             eeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEee--------------Cc--------
Q psy6984         276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL--------------RP--------  333 (380)
Q Consensus       276 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--------------~~--------  333 (380)
                            ..+|.+..|..+++|+++.+.|..|++|.+.+++.+..+..++.......              .+        
T Consensus       305 ------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc  378 (430)
T KOG0640|consen  305 ------GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC  378 (430)
T ss_pred             ------CceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCcee
Confidence                  13466788899999999999999999999887776554433211000000              00        


Q ss_pred             -------ccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         334 -------DVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       334 -------~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                             +......-.|.+.|..+..||.+.-+++++.|..+|+|-=.
T Consensus       379 sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  379 SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             eccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence                   01112234577788899999999999999999999999643

>KOG0772|consensus

Probab=99.97  E-value=6.1e-29  Score=210.00  Aligned_cols=297  Identities=19%  Similarity=0.231  Sum_probs=221.9

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      -.|.+|+..|+++.+.|. +-.|++||.|.+|++||+..-+....--..-.......|+.+.|++.|..|++.+.....+
T Consensus       161 i~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             EeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            467899999999999998 7899999999999999987533222110111123445699999999999999998889999


Q ss_pred             EEECCCCceeee------------ecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEee-----CCCcCc
Q psy6984          90 LWDLAAGKTTRR------------FEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVE-----DGHSDW  151 (380)
Q Consensus        90 vwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~  151 (380)
                      |+|-...+....            .++|...++|.+|+|+.+ .++|++.|+++++||+........+.     .+..-.
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            999654433322            257999999999999764 68899999999999986543322211     223345


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee---eEeeeCCcc--ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL---KINHSGHTG--YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      +...+|++++.  .+++|..||.|.+|+..+...   ......|..  .|+++.|+++|++|++-+.|+.+++||++..+
T Consensus       320 ~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  320 VTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             ceeeecCCCcc--hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence            77889999875  589999999999999865322   122345765  89999999999999999999999999998754


Q ss_pred             E-EEEE---EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         227 H-LHTL---VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       227 ~-~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      . +...   ....+.+.++|||+......+.........+.+++|+..+-..+..+.-....|..+.|+|.=+.+..|+.
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence            3 3222   23445678899999877666655555566667788876655544443333456788999999888888999


Q ss_pred             CCcEEEE
Q psy6984         303 DKTIKLW  309 (380)
Q Consensus       303 dg~v~iw  309 (380)
                      ||+++++
T Consensus       478 dG~~~vy  484 (641)
T KOG0772|consen  478 DGTAHVY  484 (641)
T ss_pred             CCceEEE
Confidence            9999987

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.4e-28  Score=216.80  Aligned_cols=249  Identities=16%  Similarity=0.233  Sum_probs=184.1

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc-----c---cccccccCCCcceEEEEEcc-CCCEEEEEeCCCcE
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY-----G---VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTL   88 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~-----~---~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i   88 (380)
                      .|+.....++ +..+++++.+..+..|+........     +   .....+.+|...|.+++|+| ++++|++|+.|+.|
T Consensus        22 ~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         22 NVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             ccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            3443333333 3457788888888888754321100     0   01123679999999999999 88999999999999


Q ss_pred             EEEECCCC-------ceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          89 RLWDLAAG-------KTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        89 ~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      ++||+.++       +.+..+.+|...|.+++|+|++ ..|++++.|+.|++||+.+...... ..+|...|.+++|+|+
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~-l~~h~~~V~sla~spd  179 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV-IKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE-EcCCCCceEEEEEECC
Confidence            99999764       3456788999999999999986 6899999999999999877654433 3578889999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccc-eEEEEEcCCCCEEEEEc----CCCcEEEEECCCCcEEEEEEecC
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGY-LNTVTVSPDGSLCASGG----KDMNAMLWDLNDGKHLHTLVHND  235 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~  235 (380)
                      +.  +|++++.|+.|++||+++++......+|.+. ...+.|.+++..+++++    .|+.|++||+++........   
T Consensus       180 G~--lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~---  254 (493)
T PTZ00421        180 GS--LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV---  254 (493)
T ss_pred             CC--EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe---
Confidence            64  7999999999999999998887777788754 45677888887777654    57999999987643111000   


Q ss_pred             ceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEecccc
Q psy6984         236 IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAH  314 (380)
Q Consensus       236 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~  314 (380)
                           ..                                     .....+....|++++++|++|+ .|+.|++|++..+
T Consensus       255 -----~~-------------------------------------d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        255 -----DL-------------------------------------DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             -----cc-------------------------------------CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence                 00                                     0001233456889999998887 5999999998655


Q ss_pred             e
Q psy6984         315 C  315 (380)
Q Consensus       315 ~  315 (380)
                      .
T Consensus       293 ~  293 (493)
T PTZ00421        293 R  293 (493)
T ss_pred             c
Confidence            4

>KOG0264|consensus

Probab=99.97  E-value=1.7e-29  Score=210.45  Aligned_cols=272  Identities=23%  Similarity=0.371  Sum_probs=208.0

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc-----ccccccccCCCcceEEEEEccCC-CE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY-----GVPQKRLKGHSHFISDIVLSSDG-NY   78 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~   78 (380)
                      .+++...+ -|.+.|+.+...|..+.++|+.+..+.|.|||..+.....     ..|..++.+|+..=+.+.|++.. -+
T Consensus       114 ~v~i~~~i-~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~  192 (422)
T KOG0264|consen  114 KVEISQKI-NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT  192 (422)
T ss_pred             ceEEEEec-cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccccee
Confidence            34444443 5899999999999989999999999999999987542211     12344788999877889999754 47


Q ss_pred             EEEEeCCCcEEEEECCCCc-------eeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCC-cceEEEeeCCCc
Q psy6984          79 ALSGSWDKTLRLWDLAAGK-------TTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLA-HCKFTIVEDGHS  149 (380)
Q Consensus        79 l~s~~~d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~-~~~~~~~~~~~~  149 (380)
                      |++++.|+.|++||++...       ....+.+|...|.+++|++ +...|++++.|+.+.|||++. ..+......+|+
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~  272 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHS  272 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccC
Confidence            9999999999999997532       3456789999999999998 456788999999999999985 334445567899


Q ss_pred             CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                      ..++|++|+|-. ..+|+||+.|++|++||+++.. ....+.+|...|..+.|+|.. ..||+++.|+++.+||+..-..
T Consensus       273 ~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  273 AEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             CceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            999999999975 5689999999999999999854 445678999999999999965 5788999999999999864221


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE-EEEeeCCCcE
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ-IVSSSRDKTI  306 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v  306 (380)
                      ...             +..            ..++..        ++.....+|...|..+.|+|+..+ ++|.++|+.+
T Consensus       352 eq~-------------~ed------------a~dgpp--------EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L  398 (422)
T KOG0264|consen  352 EQS-------------PED------------AEDGPP--------ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL  398 (422)
T ss_pred             ccC-------------hhh------------hccCCc--------ceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence            110             000            000000        111223356677889999999876 7788999999


Q ss_pred             EEEec
Q psy6984         307 KLWNT  311 (380)
Q Consensus       307 ~iw~~  311 (380)
                      +||..
T Consensus       399 qIW~~  403 (422)
T KOG0264|consen  399 QIWQM  403 (422)
T ss_pred             EEeec
Confidence            99975

>KOG0268|consensus

Probab=99.97  E-value=3.5e-30  Score=208.57  Aligned_cols=292  Identities=22%  Similarity=0.387  Sum_probs=224.3

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      +++.|.||.+.|.+++-+|+....+|+|+.||.|++||+....     ....+..|.+.|..+++..  ..+++++.|.+
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKt  130 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKT  130 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----hhheeecccCceeeEEecc--cceEEecCCcc
Confidence            6778999999999999999876889999999999999986533     2456789999999999987  77999999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      |+.|-+.. ...+++.+ ...+..+.-+..+..++|++.+  |-|||...........-+ .+.+.++.|+|.... +|+
T Consensus       131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETs-ILa  204 (433)
T KOG0268|consen  131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETS-ILA  204 (433)
T ss_pred             eeeeeccC-Ccceeeec-cccccccccccccccccccCce--eeecccccCCccceeecC-CCceeEEecCCCcch-hee
Confidence            99998765 35555433 3456677776677788888775  899997655555444433 456899999998654 788


Q ss_pred             EEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-EEEE-EecCceEEEEeecC
Q psy6984         168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH-LHTL-VHNDIITALCFSPN  245 (380)
Q Consensus       168 s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~-~~~~~i~~~~~~~~  245 (380)
                      +++.|+.|.+||++......... .....+.++|+|.+-.|++|+.|..++.||++.-+. +... .|.+.+.++.|||.
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt  283 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT  283 (433)
T ss_pred             eeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence            99999999999999876654332 123467899999888899999999999999876432 2222 46778889999997


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeee-ccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeE
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  319 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  319 (380)
                      +.-      +....-+..+++|..+++....... .....|.++.||.|.+|++|||.|+.|++|....-.++.+
T Consensus       284 G~E------fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  284 GQE------FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV  352 (433)
T ss_pred             cch------hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence            753      2233446789999998876543222 2235699999999999999999999999998765544443

>KOG0274|consensus

Probab=99.97  E-value=2.7e-28  Score=219.90  Aligned_cols=278  Identities=29%  Similarity=0.469  Sum_probs=220.2

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      |...+++..++   +.++++++.|+++++|+.....    .....+.||.+.|.++++..-+.+|++|+.|.++++||..
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~----~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGY----LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS  279 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccce----EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence            45678888887   3589999999999999865322    1123378999999999998878899999999999999999


Q ss_pred             CCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      ++++...+.+|...|.++...  ..++++|+.|.+|++|++..+..+.... +|..+|.++.++    +.++++|+.|++
T Consensus       280 sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~----~~~lvsgs~d~~  352 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD----EPLLVSGSYDGT  352 (537)
T ss_pred             CCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec----CCEEEEEecCce
Confidence            999999999999999988764  5578889999999999998777766654 499999999997    348999999999


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEEecCceEEEEeecCcccceeee
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG-KHLHTLVHNDIITALCFSPNRSFQKIKL  253 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~  253 (380)
                      |++||+...++...+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +.++.+.+...                 
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-----------------  414 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-----------------  414 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc-----------------
Confidence            999999999999999999999999988776 89999999999999999987 55444432211                 


Q ss_pred             eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCc
Q psy6984         254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP  333 (380)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  333 (380)
                                                    -+.  .+...++.|++++.|++|++||..++.....+           ..
T Consensus       415 ------------------------------~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~-----------~~  451 (537)
T KOG0274|consen  415 ------------------------------LVS--SLLLRDNFLVSSSADGTIKLWDAEEGECLRTL-----------EG  451 (537)
T ss_pred             ------------------------------ccc--ccccccceeEeccccccEEEeecccCceeeee-----------cc
Confidence                                          111  12235788999999999999987554433222           11


Q ss_pred             ccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984         334 DVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~  377 (380)
                      .        +...+..+++.  ...+++++.||.+++||+...+
T Consensus       452 ~--------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  452 R--------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             C--------CcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence            0        22334555543  4677889999999999986543

>KOG0305|consensus

Probab=99.97  E-value=2.2e-28  Score=212.75  Aligned_cols=276  Identities=23%  Similarity=0.349  Sum_probs=220.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCC
Q psy6984          69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGH  148 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~  148 (380)
                      -+.|+. .+.|++|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||.............|
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h  259 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH  259 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence            356763 44566555 4589999999998777776668899999999999999999999999999987666665555558


Q ss_pred             cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984         149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       149 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                      ...|.+++|+.    ..+.+|+.++.|..+|++..+.... ..+|...|+.+.|++|++++|+|+.|+.+.|||.....+
T Consensus       260 ~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  260 ASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             CceeEEEeccC----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            99999999973    3688999999999999987665444 778999999999999999999999999999999966665


Q ss_pred             EEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee--CCC
Q psy6984         228 LHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS--RDK  304 (380)
Q Consensus       228 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg  304 (380)
                      ...+ .|.+.|.+++|+|-..-   .+....+..+..+.+|++..++.+.... -...|.+|.|++..+.|+++-  .+.
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~---lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSG---LLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccC---ceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence            5554 79999999999996432   3345556678889999999887654332 235689999999998877743  467


Q ss_pred             cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       305 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      .|.||+...           .+.+..         ...|...|..+++||||..+++|+.|.++++|++-
T Consensus       412 ~i~lw~~ps-----------~~~~~~---------l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  412 QITLWKYPS-----------MKLVAE---------LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             cEEEEeccc-----------cceeee---------ecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            899997633           222221         23466678999999999999999999999999874

>KOG0643|consensus

Probab=99.97  E-value=1.4e-27  Score=186.02  Aligned_cols=296  Identities=20%  Similarity=0.276  Sum_probs=222.2

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      .++||+.+++.+.++.+|.+|++++.|....||=..+|+.+.++.+|.++|.|+..+-+.+++++|+.|.++++||..++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            47899999999999999999999999999999998899999999999999999999999999999999999999999988


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEE----eCCCeEEEEeCCC-------ceeeEeeeCCccceEEEEEcCCCCE
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA----GWDRMVKVWNLTN-------CKLKINHSGHTGYLNTVTVSPDGSL  207 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----~~d~~v~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~  207 (380)
                      +.+..+..  ...|..+.|++++.. .+++.    +..+.|.++|++.       .++....+.+...++.+.|.|.+++
T Consensus        85 k~la~~k~--~~~Vk~~~F~~~gn~-~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   85 KQLATWKT--NSPVKRVDFSFGGNL-ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             cEEEEeec--CCeeEEEeeccCCcE-EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            87766543  456899999997652 33322    3346799999983       3445566677789999999999999


Q ss_pred             EEEEcCCCcEEEEECCCCcEEEEE--EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccce
Q psy6984         208 CASGGKDMNAMLWDLNDGKHLHTL--VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDV  285 (380)
Q Consensus       208 l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  285 (380)
                      +++|..||.|..||.+++...-.-  .|...|+.++++++..+-.      ....+....+++..+-..... +.-..++
T Consensus       162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi------T~s~Dttakl~D~~tl~v~Kt-y~te~Pv  234 (327)
T KOG0643|consen  162 IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFI------TGSKDTTAKLVDVRTLEVLKT-YTTERPV  234 (327)
T ss_pred             EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEE------ecccCccceeeeccceeeEEE-eeecccc
Confidence            999999999999999998654333  5788999999999976532      223455556676655444332 3334678


Q ss_pred             eEEEEeecCCEEEEeeCCCcEEEEec--ccc-eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE
Q psy6984         286 LSVAFSVDNRQIVSSSRDKTIKLWNT--LAH-CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG  362 (380)
Q Consensus       286 ~~~~~s~~~~~l~s~~~dg~v~iw~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g  362 (380)
                      .+.+++|....++.|+...-.-+=..  ..+ .+.+++++-..         ........|-+++.+++|+|||+..++|
T Consensus       235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e---------EEigrvkGHFGPINsvAfhPdGksYsSG  305 (327)
T KOG0643|consen  235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE---------EEIGRVKGHFGPINSVAFHPDGKSYSSG  305 (327)
T ss_pred             cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH---------HHhccccccccCcceeEECCCCcccccC
Confidence            99999998888887764321111000  000 00111110000         0011235677889999999999999999


Q ss_pred             eeCCeEEEEEe
Q psy6984         363 YSDNTIRVWQV  373 (380)
Q Consensus       363 ~~dg~v~iw~~  373 (380)
                      +.||.||+.-.
T Consensus       306 GEDG~VR~h~F  316 (327)
T KOG0643|consen  306 GEDGYVRLHHF  316 (327)
T ss_pred             CCCceEEEEEe
Confidence            99999999754

>KOG0639|consensus

Probab=99.97  E-value=5.2e-29  Score=209.89  Aligned_cols=286  Identities=20%  Similarity=0.334  Sum_probs=219.8

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .|..-|..+..+.. ...++||++ |.|+|||+........+.+.......++|..+...|||+.|++|+.-.++.|||+
T Consensus       417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            57777877777765 678999986 7999999976532222222223345678999999999999999999999999999


Q ss_pred             CCCceee--eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          94 AAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        94 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                      .......  ++........+++.+||.+..+++..||.|.|||+..+..... ..+|++.+.||.+++++.  .|-||+-
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq-fqGhtDGascIdis~dGt--klWTGGl  571 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ-FQGHTDGASCIDISKDGT--KLWTGGL  571 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec-ccCCCCCceeEEecCCCc--eeecCCC
Confidence            8654433  3333345677899999999999999999999999887665544 469999999999999876  4899999


Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      |.+||.||++.++....+ .....|.++...|.+.+++.|-..+.+.+-.....+.                        
T Consensus       572 DntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k------------------------  626 (705)
T KOG0639|consen  572 DNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK------------------------  626 (705)
T ss_pred             ccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc------------------------
Confidence            999999999987654332 2367899999999999999999988877654332211                        


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEee
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL  331 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  331 (380)
                                              ..+..|.+.|.++.|.+.|+++++.+.|..+..|.+-.+..+.  ..         
T Consensus       627 ------------------------yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF--qs---------  671 (705)
T KOG0639|consen  627 ------------------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QS---------  671 (705)
T ss_pred             ------------------------eeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee--ec---------
Confidence                                    1122345678899999999999999999999999764433221  11         


Q ss_pred             CcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                                .....|+++..|.|+++|+||+.|....+|.|.
T Consensus       672 ----------kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  672 ----------KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             ----------cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence                      112247788899999999999999988888874

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2e-27  Score=214.98  Aligned_cols=231  Identities=19%  Similarity=0.308  Sum_probs=171.0

Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcce-------EEEeeCCCcCcEE
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCK-------FTIVEDGHSDWVS  153 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~-------~~~~~~~~~~~v~  153 (380)
                      |+.++.|++|+......+..+.+|.++|.+++|+|+ +.+|++|+.|+.|++||+.....       ......+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            677889999998877778889999999999999997 78999999999999999864321       1123357889999


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-  232 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  232 (380)
                      +++|+|++. .+|++++.|++|++||+++.+....+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+. 
T Consensus       130 sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        130 IIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            999999764 366899999999999999887655554 55789999999999999999999999999999887665542 


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC----cEEE
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK----TIKL  308 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~v~i  308 (380)
                      |...+..                                           ..++...|++++.+|++++.|+    +|++
T Consensus       208 H~g~~~s-------------------------------------------~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL  244 (568)
T PTZ00420        208 HDGGKNT-------------------------------------------KNIWIDGLGGDDNYILSTGFSKNNMREMKL  244 (568)
T ss_pred             ccCCcee-------------------------------------------EEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence            2111110                                           0122345678999999988774    7999


Q ss_pred             Eecccc-eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         309 WNTLAH-CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       309 w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ||+... ..+..+..                  ..+...+......++|.++++|+.|+.|++|++..
T Consensus       245 WDlr~~~~pl~~~~l------------------d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        245 WDLKNTTSALVTMSI------------------DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EECCCCCCceEEEEe------------------cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence            997531 11111110                  01111222233345688899999999999999853

>KOG1408|consensus

Probab=99.97  E-value=1.1e-28  Score=216.03  Aligned_cols=297  Identities=21%  Similarity=0.331  Sum_probs=231.4

Q ss_pred             EEecCcccceEEEEeCCC----------CCCeEEEeeCCCeEEEeecCCC--CCCccc----------c-----------
Q psy6984          10 GTLNGHNGWVTQIATNPK----------FPDTILSCSRDNTLIIWKLTRD--DTNYGV----------P-----------   56 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~----------~~~~l~t~~~dg~v~vw~~~~~--~~~~~~----------~-----------   56 (380)
                      +.+--|...|..+..-|-          .+..|.|||.|++||+|++...  +..+..          +           
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d  442 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD  442 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence            344456666666665441          0347999999999999998751  001100          0           


Q ss_pred             ---------cccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeC---CCCEEEEE
Q psy6984          57 ---------QKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV---DNRQIVSS  124 (380)
Q Consensus        57 ---------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~~s~  124 (380)
                               ....-+-...+.+++++|+|++||+|..-|+++||++.+-+....++.|..+|.|+.++.   ..++||++
T Consensus       443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa  522 (1080)
T KOG1408|consen  443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA  522 (1080)
T ss_pred             ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence                     001123345789999999999999999999999999999888888999999999999974   34678999


Q ss_pred             eCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-----CccceEEE
Q psy6984         125 SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-----HTGYLNTV  199 (380)
Q Consensus       125 ~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~~~~i~~~  199 (380)
                      ++|+.|.+||......+.....+|+..|+++.|..++-+...++++.|+.|.+--..+..--..+..     ....+..+
T Consensus       523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm  602 (1080)
T KOG1408|consen  523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM  602 (1080)
T ss_pred             cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence            9999999999877666666667899999999999888777889999998875432221111111111     13468889


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE----ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceee
Q psy6984         200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV----HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME  275 (380)
Q Consensus       200 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (380)
                      ++.|..++++++++|..|+|||+.+++..+.++    ++.....+...|.+.|.      .....+.++.++++-.++..
T Consensus       603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~------atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYL------ATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEE------EEeecCCceEEEEeccchhh
Confidence            999999999999999999999999999999885    33445566667777663      34456889999999999999


Q ss_pred             eeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       276 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                      ...++|.+.|+.+.|.+|.+.|++.+.||.|.+|.+.
T Consensus       677 A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  677 AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             hhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            9999999999999999999999999999999999864

>KOG0308|consensus

Probab=99.97  E-value=4.3e-29  Score=216.35  Aligned_cols=300  Identities=20%  Similarity=0.348  Sum_probs=222.2

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEE-ccCCCEEEEEeCCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVL-SSDGNYALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~d~   86 (380)
                      ....+..|+++|++|+.... ++.|++||.|-+|++|+...+.   ......+..|.++|.|+++ .++..++|+||.|+
T Consensus        65 ~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~---~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~  140 (735)
T KOG0308|consen   65 YIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDN---TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR  140 (735)
T ss_pred             hhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCc---chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence            35678899999999998876 6799999999999999987654   2234567899999999999 88899999999999


Q ss_pred             cEEEEECCCCc--ee--------eeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEE
Q psy6984          87 TLRLWDLAAGK--TT--------RRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCV  155 (380)
Q Consensus        87 ~i~vwd~~~~~--~~--------~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  155 (380)
                      .|++||++++.  .+        ..+. ++..+|.+++.++.|..+++|+..+.+++||.++..+...+. +|++.|.++
T Consensus       141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~l  219 (735)
T KOG0308|consen  141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVL  219 (735)
T ss_pred             cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEE
Confidence            99999999762  22        2233 788899999999999999999999999999988776665555 999999999


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-EEEEEec
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH-LHTLVHN  234 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~  234 (380)
                      ..+.+++  .++++++||+|++||+...++...+..|...++++..+|+-..+.+|+.|+.|+.-|+++... ...+..+
T Consensus       220 l~~dDGt--~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d  297 (735)
T KOG0308|consen  220 LVNDDGT--RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED  297 (735)
T ss_pred             EEcCCCC--eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC
Confidence            9999876  589999999999999999898888889999999999999999999999999999999988532 2222223


Q ss_pred             CceEEEEeecCcccceeeeeeeeeccccceEEEEcC-----------------Cceee-----eeeeccc--cceeEEEE
Q psy6984         235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN-----------------HGKME-----TPFFSLF--RDVLSVAF  290 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-----~~~~~~~--~~v~~~~~  290 (380)
                      .++..+..+....      .+.....++.+..|...                 .....     ++..-..  -++...++
T Consensus       298 aPv~~l~~~~~~~------~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~m  371 (735)
T KOG0308|consen  298 APVLKLHLHEHDN------SVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAM  371 (735)
T ss_pred             CchhhhhhccccC------CceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhh
Confidence            3333222221000      00111111122111110                 00000     0111111  12344455


Q ss_pred             eecCCEEEEeeCCCcEEEEecccceeeeEe
Q psy6984         291 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  320 (380)
Q Consensus       291 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  320 (380)
                      -.|.++++|=...|.+.+||+....++.-+
T Consensus       372 L~dkRhVlTkDa~gnv~lwDIl~~~~~~d~  401 (735)
T KOG0308|consen  372 LNDKRHVLTKDAKGNVALWDILACVKVEDF  401 (735)
T ss_pred             hcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence            668899999999999999998776655433

>KOG1036|consensus

Probab=99.97  E-value=4.1e-27  Score=187.11  Aligned_cols=280  Identities=20%  Similarity=0.323  Sum_probs=203.6

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      +..|+++.+.|. ...|+.++.||++++|++....      ....-.|..++.+++|.++ ..+++|+.||.|+.+|+++
T Consensus        13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~------l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANS------LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             hhceeeEEEcCc-CCcEEEEeccCcEEEEeccchh------hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecC
Confidence            578999999976 5677778899999999987542      1223458889999999874 5799999999999999998


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      ++... +..|..+|+|+..++....+++|+.|++|++||.+.........  ....|.|+....+    .|+.|+.|..+
T Consensus        85 ~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~g~----~LvVg~~~r~v  157 (323)
T KOG1036|consen   85 GNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVSGN----RLVVGTSDRKV  157 (323)
T ss_pred             Cccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEeccCC----EEEEeecCceE
Confidence            76544 46799999999999988899999999999999987643332222  2347888877542    58888999999


Q ss_pred             EEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeee
Q psy6984         176 KVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKL  253 (380)
Q Consensus       176 ~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  253 (380)
                      .+||+++.......  ..-.-.+.++++-|++.-++.++-||++.+=.+...+...                  -..+.+
T Consensus       158 ~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~------------------skkyaF  219 (323)
T KOG1036|consen  158 LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ------------------SKKYAF  219 (323)
T ss_pred             EEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh------------------hhceeE
Confidence            99999987654322  2234578999999999999999999999876554331100                  000111


Q ss_pred             eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCc
Q psy6984         254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP  333 (380)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  333 (380)
                      ...+...++.-.+|                +|.+++|+|-...|+||+.||.|.+||....+           .+..+..
T Consensus       220 kCHr~~~~~~~~~y----------------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK-----------rl~q~~~  272 (323)
T KOG1036|consen  220 KCHRLSEKDTEIIY----------------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK-----------RLKQLAK  272 (323)
T ss_pred             EeeecccCCceEEE----------------EeceeEeccccceEEecCCCceEEEccCcchh-----------hhhhccC
Confidence            11111122223333                46689999999999999999999999864332           2222211


Q ss_pred             ccccccCCCCCCceEEEEEecCCCEEEEEee
Q psy6984         334 DVVSQSTKADPPMCLSLAWSTDGQTLFAGYS  364 (380)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~  364 (380)
                               .+..|.+++|+.||..||.|+.
T Consensus       273 ---------~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  273 ---------YETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ---------CCCceEEEEeccCCCeEEEEec
Confidence                     1334678999999999998874

>KOG1446|consensus

Probab=99.97  E-value=7.3e-27  Score=186.48  Aligned_cols=254  Identities=21%  Similarity=0.306  Sum_probs=192.4

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCC
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTL  136 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~  136 (380)
                      .+..-...|+++.|+++|.+|++++.|-.++|||..+++..+++..++..+..+.|......++.++.  |.+|+.-++.
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            34444567999999999999999999999999999999999999888888889999877777777776  8899998876


Q ss_pred             CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      ..+-+.. ..+|...|..++.+|.+  ..+++++.|++||+||++..+..-.+.  ...-..++|+|.|-++|++.....
T Consensus        89 dNkylRY-F~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~  163 (311)
T KOG1446|consen   89 DNKYLRY-FPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFALANGSEL  163 (311)
T ss_pred             cCceEEE-cCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEEecCCCe
Confidence            6544444 46999999999999976  379999999999999999655443332  223345789999999999999889


Q ss_pred             EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE
Q psy6984         217 AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ  296 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  296 (380)
                      |++||++.-..                  +++                ..+.+..        +...+...+.|||||++
T Consensus       164 IkLyD~Rs~dk------------------gPF----------------~tf~i~~--------~~~~ew~~l~FS~dGK~  201 (311)
T KOG1446|consen  164 IKLYDLRSFDK------------------GPF----------------TTFSITD--------NDEAEWTDLEFSPDGKS  201 (311)
T ss_pred             EEEEEecccCC------------------CCc----------------eeEccCC--------CCccceeeeEEcCCCCE
Confidence            99999875320                  111                1111110        11234568999999999


Q ss_pred             EEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       297 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      ++-+...+.+++-|...+..+.-+.....                 ....-.+.+|+||++++++|+.||.|.+|++..+
T Consensus       202 iLlsT~~s~~~~lDAf~G~~~~tfs~~~~-----------------~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  202 ILLSTNASFIYLLDAFDGTVKSTFSGYPN-----------------AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             EEEEeCCCcEEEEEccCCcEeeeEeeccC-----------------CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence            99999999999998876653322211110                 0001146789999999999999999999998644

>KOG1407|consensus

Probab=99.97  E-value=2.7e-28  Score=189.36  Aligned_cols=250  Identities=22%  Similarity=0.327  Sum_probs=193.8

Q ss_pred             eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984         100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW  178 (380)
Q Consensus       100 ~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw  178 (380)
                      +.+.+|...+.+++|+.+|..+++|+.|+++.+|++..... ......+|.+.|..++|+|... ..|++++.|++|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEEE
Confidence            45678889999999999999999999999999999765422 2234468888899999999765 478999999999999


Q ss_pred             eCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeee
Q psy6984         179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRT  258 (380)
Q Consensus       179 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  258 (380)
                      |++..+.........+.+ -+.|+|+|++++.++.|..|.+.|.++.+........-.+..++|+.+..+-.+.      
T Consensus        93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt------  165 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT------  165 (313)
T ss_pred             EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEe------
Confidence            999988876655433444 4789999999999999999999999999988888778888888888554432221      


Q ss_pred             ccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccc
Q psy6984         259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ  338 (380)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (380)
                      .+.+.+.+.....-+.+..+..|...-.|+.|+|+|+|||+|+.|-.|-+||+..        +--.+++..+       
T Consensus       166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--------LiC~R~isRl-------  230 (313)
T KOG1407|consen  166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--------LICERCISRL-------  230 (313)
T ss_pred             cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--------hhhheeeccc-------
Confidence            1234455555556666777778888889999999999999999999999998632        1111122211       


Q ss_pred             cCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984         339 STKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       339 ~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~  377 (380)
                           .=+|..+.||.||++||+||+|..|-|=++.++.
T Consensus       231 -----dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  231 -----DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             -----cCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence                 2246789999999999999999999775555443

>KOG0641|consensus

Probab=99.97  E-value=2.5e-26  Score=175.04  Aligned_cols=301  Identities=22%  Similarity=0.280  Sum_probs=218.1

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC-C-----Cc----ccccccccCCCcceEEEEEc
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD-T-----NY----GVPQKRLKGHSHFISDIVLS   73 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~-~-----~~----~~~~~~~~~h~~~v~~~~~~   73 (380)
                      ++.+.+..|.. ...|.+++|+|. +.+.+.||...++|+-..+.-- .     ..    .+..++.+-|...|+|.+|+
T Consensus        21 ~~f~~i~~l~d-sqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   21 KHFEAINILED-SQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             cceEEEEEecc-hhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence            45566655543 678999999998 6899999999999988654210 0     00    11234567789999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCce-----eeeecccCCCeEEEEEeCC----CCEEEEEe-CCCcEEEEeCCCcceEEE
Q psy6984          74 SDGNYALSGSWDKTLRLWDLAAGKT-----TRRFEDHTKDVLSVAFSVD----NRQIVSSS-RDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        74 ~~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~~~----~~~~~s~~-~d~~v~iwd~~~~~~~~~  143 (380)
                      |+|++|++|+.|..|++...+....     -.++.-|.+.|.+++|..+    +..+++++ .|..|.+-|-..+..+..
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            9999999999999999987754322     2345679999999999643    34566544 455666666555555444


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--C-----CccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--G-----HTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~-----~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                       ..+|+..|-.+- +.+  +..+++|+.|.+||+||++-...+....  -     ....|.+++++|.|++|++|-.|..
T Consensus       179 -~sghtghilaly-swn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss  254 (350)
T KOG0641|consen  179 -LSGHTGHILALY-SWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS  254 (350)
T ss_pred             -ecCCcccEEEEE-Eec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence             358888777653 222  3479999999999999998655443321  1     2357899999999999999999999


Q ss_pred             EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE
Q psy6984         217 AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ  296 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  296 (380)
                      ..+||++.++.++                                               .+..|..+|.++.|||.-.|
T Consensus       255 c~lydirg~r~iq-----------------------------------------------~f~phsadir~vrfsp~a~y  287 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQ-----------------------------------------------RFHPHSADIRCVRFSPGAHY  287 (350)
T ss_pred             eEEEEeeCCceee-----------------------------------------------eeCCCccceeEEEeCCCceE
Confidence            9999987766543                                               33455567888999999999


Q ss_pred             EEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       297 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      |++|+.|..|++=|+....       ..     ++.    ......|...+..+.|+|..--+++.+.|.++.+|-+
T Consensus       288 llt~syd~~ikltdlqgdl-------a~-----el~----~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  288 LLTCSYDMKIKLTDLQGDL-------AH-----ELP----IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EEEecccceEEEeecccch-------hh-----cCc----eEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            9999999999998764321       10     111    1111235556778999999988899999999999965

>KOG0283|consensus

Probab=99.97  E-value=1.9e-28  Score=218.80  Aligned_cols=248  Identities=20%  Similarity=0.375  Sum_probs=187.8

Q ss_pred             eeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc----------------------------e---------
Q psy6984          99 TRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC----------------------------K---------  140 (380)
Q Consensus        99 ~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~----------------------------~---------  140 (380)
                      .+.+. .|.++|.++.|++||++||+|+.|+.|+||.+....                            .         
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34445 899999999999999999999999999999753300                            0         


Q ss_pred             ----------------------EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEE
Q psy6984         141 ----------------------FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNT  198 (380)
Q Consensus       141 ----------------------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~  198 (380)
                                            ......+|...|-.|.|+.+   .+|++++.|.+||+|++....+...+ .|...|+|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTc  414 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTC  414 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCcceeeEE-ecCCeeEE
Confidence                                  00011378888888888864   48999999999999999877765554 49999999


Q ss_pred             EEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984         199 VTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP  277 (380)
Q Consensus       199 ~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (380)
                      ++|+| |.+||++|+.|+.++||++...+.+......+.|+++|+.|++++..++.      -.+.+++|.+...+.+..
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt------~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT------FNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE------eccEEEEEEccCCeEEEe
Confidence            99999 88999999999999999999988888877889999999999998765543      356777888877666543


Q ss_pred             eec--------cccceeEEEEeecCC-EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceE
Q psy6984         278 FFS--------LFRDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCL  348 (380)
Q Consensus       278 ~~~--------~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (380)
                      ..-        ....|+.+.|.|... .++..+.|..|||+|..+           ..++..++.-.      ....+ .
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-----------~~lv~KfKG~~------n~~SQ-~  550 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-----------KDLVHKFKGFR------NTSSQ-I  550 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc-----------hhhhhhhcccc------cCCcc-e
Confidence            321        123699999998554 355568899999997532           22222221100      00111 3


Q ss_pred             EEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         349 SLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       349 ~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ...|+.||++|++|++|..|+||+..
T Consensus       551 ~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  551 SASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             eeeEccCCCEEEEeecCceEEEEeCC
Confidence            56799999999999999999999974

>KOG0300|consensus

Probab=99.96  E-value=2.2e-28  Score=195.14  Aligned_cols=263  Identities=28%  Similarity=0.425  Sum_probs=208.9

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEee------cCCCCC-------------------------
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK------LTRDDT-------------------------   51 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~------~~~~~~-------------------------   51 (380)
                      .+...+...+.||.|.|++|.|++. +.+++|+|.|++..+|.      ++....                         
T Consensus       177 ~Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~  255 (481)
T KOG0300|consen  177 LESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK  255 (481)
T ss_pred             eccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc
Confidence            4566788899999999999999997 78999999999999998      322000                         


Q ss_pred             ----CcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC
Q psy6984          52 ----NYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD  127 (380)
Q Consensus        52 ----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d  127 (380)
                          ...+|...+++|...|.++.|-..|+.++++++|..-.+||+++++.+..+.+|..+.+.++-+|..+++++++.|
T Consensus       256 sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrD  335 (481)
T KOG0300|consen  256 SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD  335 (481)
T ss_pred             cCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccC
Confidence                0123455688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCE
Q psy6984         128 KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL  207 (380)
Q Consensus       128 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  207 (380)
                      .+.++||.+..-......++|++.|+++.|..+.   .+++|+.|.+|++||+++.+.....-.-..+++.++++..++.
T Consensus       336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd---~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~i  412 (481)
T KOG0300|consen  336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD---RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPI  412 (481)
T ss_pred             ceeEeccchhhcceeeeecccccceeEEEEecCC---ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCce
Confidence            9999999886555556678999999999998764   3899999999999999986543322223567889999988889


Q ss_pred             EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeE
Q psy6984         208 CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLS  287 (380)
Q Consensus       208 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  287 (380)
                      ++.--.+..|++||+...+.. .+            |-                              ..-.+|..-|.|
T Consensus       413 IAiPhDNRqvRlfDlnG~Rla-Rl------------Pr------------------------------tsRqgHrRMV~c  449 (481)
T KOG0300|consen  413 IAIPHDNRQVRLFDLNGNRLA-RL------------PR------------------------------TSRQGHRRMVTC  449 (481)
T ss_pred             EEeccCCceEEEEecCCCccc-cC------------Cc------------------------------ccccccceeeee
Confidence            999989999999998543321 11            00                              001122333556


Q ss_pred             EEEeecC--CEEEEeeCCCcEEEEecc
Q psy6984         288 VAFSVDN--RQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       288 ~~~s~~~--~~l~s~~~dg~v~iw~~~  312 (380)
                      ++|..+.  .-|++|+.|+.+.-|++.
T Consensus       450 ~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  450 CAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             eeccccCcccccccccccceeeeeEec
Confidence            6775433  347899999999999753

>KOG0294|consensus

Probab=99.96  E-value=4e-27  Score=187.64  Aligned_cols=266  Identities=19%  Similarity=0.347  Sum_probs=200.4

Q ss_pred             EEEEeCCCcEEEEECCCC------------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC
Q psy6984          79 ALSGSWDKTLRLWDLAAG------------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED  146 (380)
Q Consensus        79 l~s~~~d~~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~  146 (380)
                      |++|+.+..|.=+++...            .++..+..|.+++++++.+  +.++++|+.|.+|+|||+.+......+. 
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-
Confidence            556666666655554321            1244567899999999985  8999999999999999988765554443 


Q ss_pred             CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      .|.+.|+++.|.+......|++|+.||.|.+|+....++...+++|.+.|+.++++|.|++.++-+.|+.+++||+-+|+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            68899999999987665579999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984         227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI  306 (380)
Q Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  306 (380)
                      .-..+........+.|+|.+.+..+..       ...+-+|.+...++....... ..+.++.|- ++.+|++|+.|+.|
T Consensus       161 ~a~v~~L~~~at~v~w~~~Gd~F~v~~-------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i  231 (362)
T KOG0294|consen  161 VAFVLNLKNKATLVSWSPQGDHFVVSG-------RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWI  231 (362)
T ss_pred             cceeeccCCcceeeEEcCCCCEEEEEe-------ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceE
Confidence            877777677777799999887433221       233456665554432222111 335566554 67889999999999


Q ss_pred             EEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE--EecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         307 KLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA--WSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       307 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      ++||........                    ...+|...|.++.  -.|++.+|+++|.||.|+|||++.-
T Consensus       232 ~~~D~ds~~~~~--------------------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  232 SLKDTDSDTPLT--------------------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCCCccce--------------------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999864422211                    1234555566655  3567889999999999999999754

>KOG1332|consensus

Probab=99.96  E-value=3.2e-28  Score=187.23  Aligned_cols=253  Identities=23%  Similarity=0.353  Sum_probs=191.3

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC---ceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEE
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG---KTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLW  133 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iw  133 (380)
                      ..+.|.+.|.++...--|++|+|++.|+.|+|+.++++   +.+.++.+|.++|..++|..  -|..||+++-||.|.||
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            34679999999988888999999999999999999765   46778899999999999965  89999999999999999


Q ss_pred             eCCCcceEE--EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc---eeeEeeeCCccceEEEEEcCC---C
Q psy6984         134 NTLAHCKFT--IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC---KLKINHSGHTGYLNTVTVSPD---G  205 (380)
Q Consensus       134 d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~---~  205 (380)
                      .-..+ +..  .....|...|++++|.|..-...|+.++.||.|.+.+.+..   ........|.-.++++.+.|.   |
T Consensus        86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            75443 211  22346888999999999988888999999999999998764   122345678889999999886   4


Q ss_pred             -----------CEEEEEcCCCcEEEEECCCCcEEE--EE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984         206 -----------SLCASGGKDMNAMLWDLNDGKHLH--TL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH  271 (380)
Q Consensus       206 -----------~~l~~~~~d~~i~i~d~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (380)
                                 +.|++|+-|..++||+..+++-+.  .+ .|.+.++.++|.|...+                       
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----------------------  221 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL-----------------------  221 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC-----------------------
Confidence                       569999999999999987653111  11 24444444444443111                       


Q ss_pred             ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA  351 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                                           -..+++||+.||+|.||.......     .-+..++            +..+..+..+.
T Consensus       222 ---------------------~~s~iAS~SqDg~viIwt~~~e~e-----~wk~tll------------~~f~~~~w~vS  263 (299)
T KOG1332|consen  222 ---------------------PKSTIASCSQDGTVIIWTKDEEYE-----PWKKTLL------------EEFPDVVWRVS  263 (299)
T ss_pred             ---------------------CceeeEEecCCCcEEEEEecCccC-----ccccccc------------ccCCcceEEEE
Confidence                                 135799999999999996431100     0011111            22345688999


Q ss_pred             EecCCCEEEEEeeCCeEEEEEe
Q psy6984         352 WSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       352 ~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      ||+.|..|+.++.|+.|.+|.-
T Consensus       264 WS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  264 WSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             EeccccEEEEecCCcEEEEEEe
Confidence            9999999999999999999964

>KOG2106|consensus

Probab=99.96  E-value=1.3e-25  Score=189.54  Aligned_cols=324  Identities=19%  Similarity=0.293  Sum_probs=236.0

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCC-CcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH-SHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      ...-+..|....|+|..+++++++++ |.+.+|++.......+  +..+..+ +..|.|+.|.++|+ ++||.++|.|.|
T Consensus       196 vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~--~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~I  271 (626)
T KOG2106|consen  196 VKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR--QGIFEKREKKFVLCVTFLENGD-VITGDSGGNILI  271 (626)
T ss_pred             ceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE--eeccccccceEEEEEEEcCCCC-EEeecCCceEEE
Confidence            33445677888899998899999986 7999998876533221  1223222 25699999999986 899999999999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      |+..+.+..+....|.+.|.++....+|.++ +|+.|+.|..||-.-..............++.++  +++..  |+.|.
T Consensus       272 w~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~--e~~~d--i~vGT  346 (626)
T KOG2106|consen  272 WSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA--EGKGD--ILVGT  346 (626)
T ss_pred             EeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEe--cCCCc--EEEee
Confidence            9998888877777999999999999988755 5999999999993221111111112233455544  33222  55666


Q ss_pred             CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccce
Q psy6984         171 WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQK  250 (380)
Q Consensus       171 ~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  250 (380)
                      ..+.|-.=.+.+ .......+|....+.++.+|+.+.++++++|+.+++|+  ..+.+......++..++.|.|.+ ..+
T Consensus       347 trN~iL~Gt~~~-~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va  422 (626)
T KOG2106|consen  347 TRNFILQGTLEN-GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVA  422 (626)
T ss_pred             ccceEEEeeecC-CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEE
Confidence            566665544544 23345568888999999999999999999999999999  66777777889999999999987 322


Q ss_pred             eeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEe
Q psy6984         251 IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE  330 (380)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  330 (380)
                      +      ....+...+.++.+..+...... ..++.+++|+|+|.+||.|+.|+.|++|.+..+..         +... 
T Consensus       423 ~------Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~---------~y~r-  485 (626)
T KOG2106|consen  423 V------GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR---------KYSR-  485 (626)
T ss_pred             E------eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc---------EEEE-
Confidence            2      22345566777766555443333 67899999999999999999999999998643321         1111 


Q ss_pred             eCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                              ....+...+..+.||+|+++|.+.+.|-.|-.|..
T Consensus       486 --------~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  486 --------VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             --------eeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence                    11222356889999999999999999999999943

>KOG0772|consensus

Probab=99.96  E-value=3.3e-27  Score=199.64  Aligned_cols=287  Identities=21%  Similarity=0.342  Sum_probs=208.1

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce----eeee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT----TRRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW  133 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~----~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw  133 (380)
                      .+++|...|+++++.|.|-+|++|+.|-.|++||+..-..    -+.+ ......|.++.|++.|..|+..+.....+++
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL  241 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence            5678888999999999999999999999999999864211    1111 2233468999999999999999999999999


Q ss_pred             eCCCcceEEE-----------eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE---ee---eCCccce
Q psy6984         134 NTLAHCKFTI-----------VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI---NH---SGHTGYL  196 (380)
Q Consensus       134 d~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~---~~~~~~i  196 (380)
                      |.........           ...+|...++|.+|+|...+ .|+|++.|+++|+||+.+.+...   ..   .+....+
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~  320 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV  320 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence            9644332221           22588889999999998654 68899999999999998754221   11   1334578


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEE--EecC--ceEEEEeecCcccceeeeeeeeeccccceEEEEcC
Q psy6984         197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGK--HLHTL--VHND--IITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN  270 (380)
Q Consensus       197 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~--~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (380)
                      ++++|+|+|+++|+|+.||.|.+|+...-.  +...+  .|..  .|+++.||+++.+.      +....+..+.+|++.
T Consensus       321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L------lSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL------LSRGFDDTLKVWDLR  394 (641)
T ss_pred             eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh------hhccCCCceeeeecc
Confidence            999999999999999999999999974432  22222  3444  79999999998864      234457789999997


Q ss_pred             Cceee-eeeecc--ccceeEEEEeecCCEEEEeeC------CCcEEEEecccceeeeEeecccceEEEeeCcccccccCC
Q psy6984         271 HGKME-TPFFSL--FRDVLSVAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK  341 (380)
Q Consensus       271 ~~~~~-~~~~~~--~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (380)
                      ..+.. ....+.  ..+-+.++|||+.+++++|..      -|++.+++.           .+...+..+..        
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~-----------~t~d~v~ki~i--------  455 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR-----------MTLDTVYKIDI--------  455 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec-----------cceeeEEEecC--------
Confidence            65432 111121  234678999999999999754      345666653           22222222211        


Q ss_pred             CCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       342 ~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                       ....|..+.|+|.=+.|++|+.||.++||-
T Consensus       456 -~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  456 -STASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             -CCceEEEEeecchhhheeeecCCCceEEEE
Confidence             123466789999988888899999999974

>KOG0310|consensus

Probab=99.96  E-value=1.6e-27  Score=200.18  Aligned_cols=215  Identities=23%  Similarity=0.314  Sum_probs=173.8

Q ss_pred             cCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCC-CEEEEEeCCCcEEEE
Q psy6984          13 NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG-NYALSGSWDKTLRLW   91 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vw   91 (380)
                      ..-...|.++.|-.+ +.+|++|...|.|+++|...     ......+.+|+.+|..+.|+|++ ..|++|+.|+.+++|
T Consensus        65 srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~-----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~  138 (487)
T KOG0310|consen   65 SRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKS-----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW  138 (487)
T ss_pred             HhhccceeEEEeecC-CeEEEccCCcCcEEEecccc-----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence            334467889999876 78999999999999998432     22344678999999999999865 567788889999999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      |+.+......+.+|+..|+|.+|+|... .++||+-||.|++||++... ....+..|..+|..+.+-|.++  .+++++
T Consensus       139 d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs--~iasAg  215 (487)
T KOG0310|consen  139 DLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGS--LIASAG  215 (487)
T ss_pred             EcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCC--EEEEcC
Confidence            9999887667899999999999999655 67899999999999988764 3344557888999999999765  566665


Q ss_pred             CCCeEEEEeCCCc-eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCce
Q psy6984         171 WDRMVKVWNLTNC-KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       171 ~d~~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                       ...|++||+.++ +....+..|...|+|+.+..++..|++|+.|+.+++||+.+.+.++.+..+++|
T Consensus       216 -Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv  282 (487)
T KOG0310|consen  216 -GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV  282 (487)
T ss_pred             -CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccce
Confidence             468999999854 444444559999999999999999999999999999998777766655544433

>KOG2096|consensus

Probab=99.96  E-value=1.2e-26  Score=185.29  Aligned_cols=288  Identities=19%  Similarity=0.298  Sum_probs=206.0

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC-Ccc-cccccccCCCcceEEEEEccCCCEEEEE-eC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT-NYG-VPQKRLKGHSHFISDIVLSSDGNYALSG-SW   84 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~-~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~   84 (380)
                      ....|.||.+.|++++|+.+ +++|+|++.|++|++|+++.-.. ..+ +.+-.-.+|   .+.+.|+||-+-++.. -.
T Consensus        78 ~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             hhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEcc
Confidence            34578899999999999987 79999999999999999864211 110 111111223   5789999998765544 45


Q ss_pred             CCcEEEEECCC---Cceeee---------ecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE
Q psy6984          85 DKTLRLWDLAA---GKTTRR---------FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV  152 (380)
Q Consensus        85 d~~i~vwd~~~---~~~~~~---------~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v  152 (380)
                      ...+++|-+..   |.....         -+.|.-.+..+-....+.++++++.|..|.+|++.. +.+..+. .....-
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~id-tnq~~n  231 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQSID-TNQSSN  231 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeeeec-cccccc
Confidence            56799997643   221111         134666788888888899999999999999999874 3433332 222234


Q ss_pred             EEEEEccCCCCCEEEEEeCCCeEEEEeCC---Cc-----eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         153 SCVRFSPNHQNPIIVSAGWDRMVKVWNLT---NC-----KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~~~d~~v~iwd~~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      ...+++|+++  ++++++..-.|++|..-   ++     .....++||...|..++|+++.+.+++.+.||.+++||..-
T Consensus       232 ~~aavSP~GR--Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  232 YDAAVSPDGR--FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             cceeeCCCCc--EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            5578899876  78899999999999862   22     34567889999999999999999999999999999999742


Q ss_pred             ----Cc---EEEEE-----EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec-cccceeEEEEe
Q psy6984         225 ----GK---HLHTL-----VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS-LFRDVLSVAFS  291 (380)
Q Consensus       225 ----~~---~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s  291 (380)
                          ++   .++..     ........+.++|++...+..       ....+.++..+.++....+.. |...|.+++|+
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-------~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~  382 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-------FGSDLKVFASEDGKDYPELEDIHSTTISSISYS  382 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-------cCCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence                11   11111     112334478888887654433       346677888877776555543 55789999999


Q ss_pred             ecCCEEEEeeCCCcEEEEec
Q psy6984         292 VDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       292 ~~~~~l~s~~~dg~v~iw~~  311 (380)
                      ++|++++||+ |+.+++...
T Consensus       383 ~~g~~~atcG-dr~vrv~~n  401 (420)
T KOG2096|consen  383 SDGKYIATCG-DRYVRVIRN  401 (420)
T ss_pred             CCCcEEeeec-ceeeeeecC
Confidence            9999999986 789998864

>KOG2106|consensus

Probab=99.96  E-value=1.1e-25  Score=190.03  Aligned_cols=347  Identities=17%  Similarity=0.274  Sum_probs=232.7

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCC--------eEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDN--------TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNY   78 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg--------~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~   78 (380)
                      ...+.||+..|-++..+|+ ..++++|-.-|        .||+||--.-.     ....+......|.|++|++  .|.+
T Consensus        97 Qr~y~GH~ddikc~~vHPd-ri~vatGQ~ag~~g~~~~phvriWdsv~L~-----TL~V~g~f~~GV~~vaFsk~~~G~~  170 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPD-RIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----TLHVIGFFDRGVTCVAFSKINGGSL  170 (626)
T ss_pred             cccccCCCCceEEEeecCC-ceeeccCcccccCCCcCCCeeeecccccce-----eeeeeccccccceeeeecccCCCce
Confidence            3456799999999999997 46677765555        58999843211     1122334556799999997  3556


Q ss_pred             EEEE--eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE---EEeeCCCcCcEE
Q psy6984          79 ALSG--SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF---TIVEDGHSDWVS  153 (380)
Q Consensus        79 l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~  153 (380)
                      |+.-  +.+..+.|||...+..........+.|...+|+|.+..++....-+.+.+|+..+....   .+.+......|.
T Consensus       171 l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl  250 (626)
T KOG2106|consen  171 LCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVL  250 (626)
T ss_pred             EEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEE
Confidence            5554  45678999999988887777777788999999998888887778889999987654332   222222235699


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH  233 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  233 (380)
                      |++|.++++   ++||.++|.|.+|+....+.......|.+.|.++..-.+|.+|- |+.|+.|..|| ..-+.+.....
T Consensus       251 ~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~el  325 (626)
T KOG2106|consen  251 CVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETEL  325 (626)
T ss_pred             EEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccC
Confidence            999999875   89999999999999998887777669999999999999998776 99999999999 33333333322


Q ss_pred             ---cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         234 ---NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       234 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                         ..+++.++-....        +......+.+..-.++ .......++|..+.+.++.+|+...|+|++.|+.+++|+
T Consensus       326 Pe~~G~iRtv~e~~~d--------i~vGTtrN~iL~Gt~~-~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGKGD--------ILVGTTRNFILQGTLE-NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             chhcCCeeEEecCCCc--------EEEeeccceEEEeeec-CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence               2334444321111        1111111222111121 112223456777899999999999999999999999998


Q ss_pred             cccceeeeEe-----------------ecccceEE-EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         311 TLAHCKFTIV-----------------DLETKKMV-EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       311 ~~~~~~~~~~-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      -....-..++                 ...+...+ -....... ........++..|.|+|||.+||.|+.|+.|.||.
T Consensus       397 ~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~  475 (626)
T KOG2106|consen  397 DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYR  475 (626)
T ss_pred             CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccccee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence            2110000000                 00000000 00000000 11122356678899999999999999999999999


Q ss_pred             eeee
Q psy6984         373 VSVT  376 (380)
Q Consensus       373 ~~~~  376 (380)
                      |+..
T Consensus       476 Vs~~  479 (626)
T KOG2106|consen  476 VSAN  479 (626)
T ss_pred             ECCC
Confidence            8743

>KOG1332|consensus

Probab=99.96  E-value=1.9e-27  Score=183.00  Aligned_cols=252  Identities=21%  Similarity=0.344  Sum_probs=195.7

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCCCcEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWDKTLR   89 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~   89 (380)
                      ..+|++-|.++...- |+++|+||+.|++|||+.+......  .....++||.++|..++|..  .|++||+++.||.|.
T Consensus         7 dt~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s--~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQS--KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCc--eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            457999999887653 5889999999999999998765431  24567899999999999964  799999999999999


Q ss_pred             EEECCCCcee--eeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCc--ceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          90 LWDLAAGKTT--RRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAH--CKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        90 vwd~~~~~~~--~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      ||.-.+++-.  .....|...|.+++|.|.  |-.|+.++.||.|.+.+....  .....+...|.-.|+++++.|..-.
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            9998877433  334679999999999885  457899999999999876543  2233455688888999999885211


Q ss_pred             ------------CEEEEEeCCCeEEEEeCCCce--eeEeeeCCccceEEEEEcCCC----CEEEEEcCCCcEEEEECCCC
Q psy6984         164 ------------PIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYLNTVTVSPDG----SLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       164 ------------~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~i~d~~~~  225 (380)
                                  ..|++|+.|..|++|+..+..  +...+.+|...|..+++.|.-    .++|++++||++.||-.+..
T Consensus       164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e  243 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE  243 (299)
T ss_pred             ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc
Confidence                        348999999999999998753  334477899999999999964    37999999999999965421


Q ss_pred             cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984         226 KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       226 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      ...                   +.                      .   +.+......++.+.||+.|+.|+.++.|..
T Consensus       244 ~e~-------------------wk----------------------~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNk  279 (299)
T KOG1332|consen  244 YEP-------------------WK----------------------K---TLLEEFPDVVWRVSWSLSGNILAVSGGDNK  279 (299)
T ss_pred             cCc-------------------cc----------------------c---cccccCCcceEEEEEeccccEEEEecCCcE
Confidence            100                   00                      0   001112245788999999999999999999


Q ss_pred             EEEEe
Q psy6984         306 IKLWN  310 (380)
Q Consensus       306 v~iw~  310 (380)
                      |++|.
T Consensus       280 vtlwk  284 (299)
T KOG1332|consen  280 VTLWK  284 (299)
T ss_pred             EEEEE
Confidence            99996

>KOG0299|consensus

Probab=99.96  E-value=1.1e-26  Score=193.97  Aligned_cols=258  Identities=24%  Similarity=0.385  Sum_probs=199.9

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee----e-------------e-cccCCCeEEEEEeCCCCE
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR----R-------------F-EDHTKDVLSVAFSVDNRQ  120 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~-------------~-~~h~~~v~~~~~~~~~~~  120 (380)
                      ....|...+.+++++|++++.++++.++.|.-|++.+++...    .             - +.|...+.+++.++|+++
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky  216 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY  216 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence            456899999999999999999999999999999998775321    0             1 267888999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEE
Q psy6984         121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVT  200 (380)
Q Consensus       121 ~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~  200 (380)
                      |++|+.|..|.||+..+...... ..+|.+.|.+++|-....  -+++++.|+.|++|++........+.+|...|..+.
T Consensus       217 latgg~d~~v~Iw~~~t~ehv~~-~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLEHVKV-FKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEecCCCceEEEecCcccchhhc-ccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            99999999999999776544433 358999999999986543  488999999999999998887778889999999999


Q ss_pred             EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec
Q psy6984         201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS  280 (380)
Q Consensus       201 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (380)
                      ....++.+-+|+.|+++++|++....++....                                                
T Consensus       294 aL~reR~vtVGgrDrT~rlwKi~eesqlifrg------------------------------------------------  325 (479)
T KOG0299|consen  294 ALSRERCVTVGGRDRTVRLWKIPEESQLIFRG------------------------------------------------  325 (479)
T ss_pred             hhcccceEEeccccceeEEEeccccceeeeeC------------------------------------------------
Confidence            99999999999999999999985433221111                                                


Q ss_pred             cccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEE
Q psy6984         281 LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF  360 (380)
Q Consensus       281 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  360 (380)
                      +.+.+-|++|- +...|++|+.||.|.+|++.+.+.+.....+..     ..+..   ....++.++.+++..|...+++
T Consensus       326 ~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg-----v~~~~---~~~~~~~Witsla~i~~sdL~a  396 (479)
T KOG0299|consen  326 GEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG-----VIPEL---DPVNGNFWITSLAVIPGSDLLA  396 (479)
T ss_pred             CCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeecccc-----ccCCc---cccccccceeeeEecccCceEE
Confidence            12233455553 557799999999999998765544433322211     11110   0112235899999999999999


Q ss_pred             EEeeCCeEEEEEeeee
Q psy6984         361 AGYSDNTIRVWQVSVT  376 (380)
Q Consensus       361 ~g~~dg~v~iw~~~~~  376 (380)
                      +|+.+|.|++|.++..
T Consensus       397 sGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  397 SGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ecCCCCceEEEEecCC
Confidence            9999999999988654

>KOG0288|consensus

Probab=99.96  E-value=2.6e-27  Score=195.03  Aligned_cols=248  Identities=23%  Similarity=0.386  Sum_probs=197.5

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      +..++..+|.|..+.|+++.+.++ ...+++++.|+.+++|+++...     ...++.||++.|+++.|......+++|+
T Consensus       207 ~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r-----~~~TLsGHtdkVt~ak~~~~~~~vVsgs  280 (459)
T KOG0288|consen  207 EKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLR-----LRHTLSGHTDKVTAAKFKLSHSRVVSGS  280 (459)
T ss_pred             chhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchh-----hhhhhcccccceeeehhhccccceeecc
Confidence            346688899999999999999998 5788889999999999987543     2356789999999999998777799999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .|.+|++||+....+.+++.. ...+.+|..+  +..+++|-.|+.|++||.+......... .+ ..|.++..++++. 
T Consensus       281 ~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~ls~~g~-  354 (459)
T KOG0288|consen  281 ADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLDLSMDGL-  354 (459)
T ss_pred             ccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEee-cC-cceeeEeeccCCe-
Confidence            999999999998777776532 2234455544  5678899999999999987765544443 23 3799999998765 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCC----ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGH----TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA  239 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  239 (380)
                       -+++++.|.++++.|+++......+...    ....+.+.|||++.|+++|+.||.|+||++.+++....+....    
T Consensus       355 -~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~----  429 (459)
T KOG0288|consen  355 -ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST----  429 (459)
T ss_pred             -EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC----
Confidence             4778899999999999988766554432    2347889999999999999999999999998887654432110    


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                                                               ....|++++|+|.|.+|++++.++.+.+|
T Consensus       430 -----------------------------------------s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  430 -----------------------------------------SNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -----------------------------------------CCcceEEEEEcCCCchhhcccCCcceEec
Confidence                                                     01147889999999999999999999999

>KOG2096|consensus

Probab=99.95  E-value=7.8e-26  Score=180.62  Aligned_cols=289  Identities=22%  Similarity=0.314  Sum_probs=190.4

Q ss_pred             EEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCcee--eeec--ccCCCeEEEEEeC
Q psy6984          41 LIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTT--RRFE--DHTKDVLSVAFSV  116 (380)
Q Consensus        41 v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~--~h~~~v~~~~~~~  116 (380)
                      .+-|+.........+....+++|...|++++|+.||++|++++.|+.|++|++++-...  +.++  -..+..+.+.|+|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap  142 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP  142 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence            44566544444444555678999999999999999999999999999999999763221  1111  1122467899999


Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCcce----EE-------EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce
Q psy6984         117 DNRQIV-SSSRDKTIKLWNTLAHCK----FT-------IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK  184 (380)
Q Consensus       117 ~~~~~~-s~~~d~~v~iwd~~~~~~----~~-------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  184 (380)
                      |.+.++ +.-+..++++|.+.++..    ..       .+...|.-.+-.+-..-  ...++++++.|..|.+|+++ ++
T Consensus       143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecC-Cc
Confidence            988665 445667899997533211    11       11223443444444443  34589999999999999998 45


Q ss_pred             eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccce
Q psy6984         185 LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNL  264 (380)
Q Consensus       185 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (380)
                      ...........-...+++|+|+++++++-.-.+++|.+                  +|..++.++..             
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~------------------~f~kdG~fqev-------------  268 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP------------------IFTKDGTFQEV-------------  268 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEE------------------EeccCcchhhh-------------
Confidence            54444433444556789999999999999999999964                  33444443221             


Q ss_pred             EEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee-------E----eeccc-ceEEEeeC
Q psy6984         265 ILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT-------I----VDLET-KKMVEELR  332 (380)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-------~----~~~~~-~~~~~~~~  332 (380)
                              +....+.+|...|..++|||+...++|.+.||++|+||+.-..+..       .    ....+ ..+.-++.
T Consensus       269 --------~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ls  340 (420)
T KOG2096|consen  269 --------KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELS  340 (420)
T ss_pred             --------hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeC
Confidence                    1123456778889999999999999999999999999974322110       0    00000 00000111


Q ss_pred             ---------------------cccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         333 ---------------------PDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       333 ---------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                                           .+........|...|.+++|+++|+++++.+ |..+++..
T Consensus       341 P~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  341 PSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             CCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence                                 1111223345777899999999999999764 77788765

>KOG4283|consensus

Probab=99.95  E-value=3e-26  Score=181.08  Aligned_cols=291  Identities=20%  Similarity=0.335  Sum_probs=215.7

Q ss_pred             cCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC--CCccc--------ccccccCCCcceEEEEEcc-CCCEEEE
Q psy6984          13 NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD--TNYGV--------PQKRLKGHSHFISDIVLSS-DGNYALS   81 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~--~~~~~--------~~~~~~~h~~~v~~~~~~~-~~~~l~s   81 (380)
                      +.|.|.|+++...+..+.++++|+.||.|.|||+....  +....        ....-.+|.-.|+.+.|-| |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999999999888999999999999999997532  11111        1112357888899999887 6678899


Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                      ++.|..++|||.++-+....+. -.+.|.+-+++|=   ..++|+|.+|-.|++.|+..+... ....+|.+.|-++.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-H~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-HTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-eeeccccCceEEEEec
Confidence            9999999999999877766553 3456777777763   447889999999999998776544 3446999999999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCce---------------eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCK---------------LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      |.. ..+|++|+.||.||+||++...               .......|.+.++.++|..++.++++.+.|.++++|+..
T Consensus       198 p~~-e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  198 PSS-EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             cCc-eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            975 4588999999999999997531               011234688899999999999999999999999999998


Q ss_pred             CCcEEEEE----EecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEE
Q psy6984         224 DGKHLHTL----VHNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV  298 (380)
Q Consensus       224 ~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  298 (380)
                      +|+.....    .++.. ..+.+.- ......    ...-..++.+.++.+-.+..++.+..|...+.+.++-|+=+...
T Consensus       277 ~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~v----fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~  351 (397)
T KOG4283|consen  277 SGRNTLREFGPIIHNQT-TSFAVHIQSMDSDV----FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCF  351 (397)
T ss_pred             cCccccccccccccccc-ccceEEEeecccce----EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhh
Confidence            88643211    11111 1111110 000000    00111236677777777777778888888899999999988999


Q ss_pred             EeeCCCcEEEEec
Q psy6984         299 SSSRDKTIKLWNT  311 (380)
Q Consensus       299 s~~~dg~v~iw~~  311 (380)
                      +|+.|+.|..|-.
T Consensus       352 tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  352 TGDMNGNIYMWSP  364 (397)
T ss_pred             ccccCCccccccc
Confidence            9999999999964

>KOG0264|consensus

Probab=99.95  E-value=5.3e-27  Score=195.57  Aligned_cols=213  Identities=27%  Similarity=0.419  Sum_probs=179.9

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--ccccccccCCCcceEEEEEcc-CCCEEEEEeCCC
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDK   86 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~   86 (380)
                      ..|.||.+.=+.++|++...-.|++++.|++|.+||+.......  -.+...+.+|...|..++|++ +.+.+++++.|+
T Consensus       171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~  250 (422)
T KOG0264|consen  171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG  250 (422)
T ss_pred             eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence            47889999888899999877789999999999999997654321  224456789999999999998 456788999999


Q ss_pred             cEEEEECC--CCceeeeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          87 TLRLWDLA--AGKTTRRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        87 ~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .+.|||++  +.+.......|.++|.|++|+|- +..|||||.|++|.+||++.-+.......+|.+.|.++.|+|+.. 
T Consensus       251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e-  329 (422)
T KOG0264|consen  251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE-  329 (422)
T ss_pred             eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC-
Confidence            99999999  56677777899999999999994 557889999999999999876555556679999999999999754 


Q ss_pred             CEEEEEeCCCeEEEEeCCC--------------ceeeEeeeCCccceEEEEEcCCCCE-EEEEcCCCcEEEEECC
Q psy6984         164 PIIVSAGWDRMVKVWNLTN--------------CKLKINHSGHTGYLNTVTVSPDGSL-CASGGKDMNAMLWDLN  223 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~  223 (380)
                      .+|++++.|+.+.+||+..              .++.+...||...|..+.|+|+..+ +++.+.|+.+.||.+.
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            5899999999999999964              2345677899999999999998875 6788999999999874

>KOG0294|consensus

Probab=99.95  E-value=1.3e-25  Score=179.10  Aligned_cols=270  Identities=19%  Similarity=0.293  Sum_probs=204.5

Q ss_pred             eEEEeeCCCeEEEeecCCCCCC------c-ccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTN------Y-GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE  103 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~------~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  103 (380)
                      .|+.|+....|.-+++......      . -.+.-.+..|...+++++++  +.++|+||.|-+|+|||+...+.+..+.
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll   80 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL   80 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence            3566777666666666543310      0 11234567899999999884  8999999999999999999999999999


Q ss_pred             ccCCCeEEEEEeCCCC--EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984         104 DHTKDVLSVAFSVDNR--QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       104 ~h~~~v~~~~~~~~~~--~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                      .|.+.|+++.|.++-.  .|++|+.||.|.+|+...-.. .....+|...|+.++++|.+.  +.++.+.|+.++.||+-
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~-~~slK~H~~~Vt~lsiHPS~K--LALsVg~D~~lr~WNLV  157 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL-LKSLKAHKGQVTDLSIHPSGK--LALSVGGDQVLRTWNLV  157 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE-eeeecccccccceeEecCCCc--eEEEEcCCceeeeehhh
Confidence            9999999999998765  899999999999999765433 333457888899999999764  67788999999999997


Q ss_pred             CceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccc
Q psy6984         182 NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQK  261 (380)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  261 (380)
                      .++.-...+- ......+.|+|.|.+++.++.+ .|-+|.+.+......+..+..+.++.|...+.       ......+
T Consensus       158 ~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~-------L~vG~d~  228 (362)
T KOG0294|consen  158 RGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSE-------LLVGGDN  228 (362)
T ss_pred             cCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCce-------EEEecCC
Confidence            7654333221 1223448999999999888776 68899988877665555554555555543321       2233445


Q ss_pred             cceEEEEcCCceeeeeeeccccceeEEEE--eecCCEEEEeeCCCcEEEEecccc
Q psy6984         262 SNLILYPINHGKMETPFFSLFRDVLSVAF--SVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                      ..+.+++.+.......+..|...|-++.+  .|++.||+|+|.||.|++||+...
T Consensus       229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            67788888887777888889888888874  467889999999999999998654

>KOG0301|consensus

Probab=99.95  E-value=4.7e-26  Score=199.06  Aligned_cols=241  Identities=24%  Similarity=0.485  Sum_probs=195.6

Q ss_pred             EEecCcccceEE-EEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984          10 GTLNGHNGWVTQ-IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        10 ~~~~~h~~~v~~-i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      +.+.+|.+.|.. +++.+.....+++|+.|.++.+|.+....     |...+.+|+..|.++....++. +++||+|.++
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta  124 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA  124 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCC-----chhhhhccccceeeeecCCcCc-eEecccccce
Confidence            567889999888 77766444579999999999999876543     5667899999999999888887 9999999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ++|-.  +++...+.+|..+|.++++-|++ .++|||.|++|++|.-  +... ....+|++.|+.+++-++.   -|++
T Consensus       125 kvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l-~tf~gHtD~VRgL~vl~~~---~flS  195 (745)
T KOG0301|consen  125 KVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLL-KTFSGHTDCVRGLAVLDDS---HFLS  195 (745)
T ss_pred             EEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchh-hhhccchhheeeeEEecCC---CeEe
Confidence            99975  56667789999999999999988 8899999999999964  2222 2345899999999999864   3899


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      ++.||.|++|++ +++....+.+|+..+.+++..+++..+++++.|+++++|+..  .....+.++.             
T Consensus       196 csNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt-------------  259 (745)
T KOG0301|consen  196 CSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT-------------  259 (745)
T ss_pred             ecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc-------------
Confidence            999999999999 567778888999999999988899999999999999999865  2222222111             


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccccee
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  316 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  316 (380)
                                                        -.+|++.+-++|. +++|+.||.||+|.....++
T Consensus       260 ----------------------------------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  260 ----------------------------------TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             ----------------------------------cceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence                                              2466777777777 56688899999998765443

>KOG0274|consensus

Probab=99.95  E-value=9.3e-26  Score=203.56  Aligned_cols=247  Identities=25%  Similarity=0.401  Sum_probs=204.9

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      +...|.||.+.|.++++.. .++++++|+.|.++++||+.....     ...+.+|...|.++...  ..++++|+.|.+
T Consensus       241 i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C-----~~~l~gh~stv~~~~~~--~~~~~sgs~D~t  312 (537)
T KOG0274|consen  241 ILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGEC-----THSLQGHTSSVRCLTID--PFLLVSGSRDNT  312 (537)
T ss_pred             EEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcE-----EEEecCCCceEEEEEcc--CceEeeccCCce
Confidence            3444999999999999875 367999999999999999766543     34577999999888764  567888999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      |++|++.++..+..+.+|.++|.++..+  +..+++|+.|++|++||......+..+ .+|...|.++.+.+.   ..++
T Consensus       313 VkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl-~gH~~~V~sl~~~~~---~~~~  386 (537)
T KOG0274|consen  313 VKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL-SGHTGRVYSLIVDSE---NRLL  386 (537)
T ss_pred             EEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee-cCCcceEEEEEecCc---ceEE
Confidence            9999999999999999999999999987  889999999999999998866555444 479999999988763   4799


Q ss_pred             EEeCCCeEEEEeCCCc-eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEec--CceEEEEeec
Q psy6984         168 SAGWDRMVKVWNLTNC-KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN--DIITALCFSP  244 (380)
Q Consensus       168 s~~~d~~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~~~  244 (380)
                      +|+.|++|++||+++. ++...+.+|..-+..+  ...++++++++.|+.|++||..+++.++.+...  ..+..+++. 
T Consensus       387 Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-  463 (537)
T KOG0274|consen  387 SGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-  463 (537)
T ss_pred             eeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-
Confidence            9999999999999998 8888888898877555  446789999999999999999999999888653  667777665 


Q ss_pred             CcccceeeeeeeeeccccceEEEEcCCceeeeee
Q psy6984         245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPF  278 (380)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (380)
                             ...+.....++.+.+|++..++....+
T Consensus       464 -------~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  464 -------KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             -------cceEEEEecCCeeEEEecccCchhhhh
Confidence                   122344556788999999888776554

>KOG0641|consensus

Probab=99.95  E-value=1e-24  Score=166.38  Aligned_cols=252  Identities=22%  Similarity=0.288  Sum_probs=196.6

Q ss_pred             cCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC----CCEEEEEeC-CCc
Q psy6984          13 NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD----GNYALSGSW-DKT   87 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~-d~~   87 (380)
                      .-|.+.|.|.+|+|. ++++++||.|.+|++-.+..+..+..-+...+.-|...|..++|-.+    |..|++++. |..
T Consensus        86 khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             cccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            468899999999998 79999999999999987765433332233456678899999999643    456777654 667


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC-C-----CcCcEEEEEEccCC
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED-G-----HSDWVSCVRFSPNH  161 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~-~-----~~~~v~~~~~~~~~  161 (380)
                      |++=|-..|+..+.+.+|.+.|.++- +-++-.+++|+.|.+|++||++-......+.. -     .+..|..+++.|.+
T Consensus       165 iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg  243 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG  243 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence            88888889999999999999998764 34588999999999999999865444333221 1     13458888998876


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      +  +|++|-.|....+||++.++.+..+..|...|.++.|+|.-.|+++++.|..|++-|+... .    .++-++.   
T Consensus       244 r--ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-l----a~el~~~---  313 (350)
T KOG0641|consen  244 R--LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-L----AHELPIM---  313 (350)
T ss_pred             c--eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc-h----hhcCceE---
Confidence            4  8999999999999999999999999999999999999999999999999999999987431 1    1111111   


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                                                         ....|...+..+.|+|..-.+++.+.|.++.+|-+
T Consensus       314 -----------------------------------vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  314 -----------------------------------VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             -----------------------------------EEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence                                               11123345667899999999999999999999953

>KOG0300|consensus

Probab=99.95  E-value=2.6e-25  Score=177.71  Aligned_cols=295  Identities=20%  Similarity=0.352  Sum_probs=228.3

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEe---
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN---  134 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd---  134 (380)
                      ..+.||.+.|+.++.......+.+++.|..-+||.+++++++.+|.+|.+.|.+++|++.+.++++++.|++..||.   
T Consensus       142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av  221 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV  221 (481)
T ss_pred             hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence            35789999999999887777999999999999999999999999999999999999999999999999999999995   


Q ss_pred             ---CCCc---------c------------------------eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984         135 ---TLAH---------C------------------------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW  178 (380)
Q Consensus       135 ---~~~~---------~------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw  178 (380)
                         ....         .                        .......+|...|.+..|...++  .++++++|.+-.+|
T Consensus       222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~--Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ--QMVTASWDRTANLW  299 (481)
T ss_pred             cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc--eeeeeeccccceee
Confidence               1100         0                        00111235666676777766655  58999999999999


Q ss_pred             eCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-EEEEE-EecCceEEEEeecCcccceeeeeee
Q psy6984         179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK-HLHTL-VHNDIITALCFSPNRSFQKIKLDIS  256 (380)
Q Consensus       179 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~  256 (380)
                      |.++++++..+.||....+.+.-+|..+++++++.|-+.++||.+..- .+..| .|.+.+++..|..+..       +.
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-------vV  372 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-------VV  372 (481)
T ss_pred             eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-------ee
Confidence            999999999999999999999999999999999999999999998432 23333 4788899999877643       23


Q ss_pred             eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccc
Q psy6984         257 RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVV  336 (380)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (380)
                      ....+..+.+|++........-.....++..++.+..++.++---.++.|++||+...+-.            .+    .
T Consensus       373 SgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla------------Rl----P  436 (481)
T KOG0300|consen  373 SGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA------------RL----P  436 (481)
T ss_pred             ecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccc------------cC----C
Confidence            3445677889998654322222233456777888877788888777889999986443211            11    1


Q ss_pred             cccCCCCCCceEEEEEecCCC--EEEEEeeCCeEEEEEeeeec
Q psy6984         337 SQSTKADPPMCLSLAWSTDGQ--TLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       337 ~~~~~~~~~~~~~~~~s~dg~--~l~~g~~dg~v~iw~~~~~~  377 (380)
                      ......|..+|.+++|+.+-.  -|++++.|..+.=|++.++.
T Consensus       437 rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  437 RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             cccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence            123456778899999987643  37788899999999998764

>KOG1408|consensus

Probab=99.95  E-value=2.9e-25  Score=194.86  Aligned_cols=324  Identities=20%  Similarity=0.301  Sum_probs=234.8

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc------C-----CCEEEEEeCCCcEE
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS------D-----GNYALSGSWDKTLR   89 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------~-----~~~l~s~~~d~~i~   89 (380)
                      .+.|.+. .+.+.....|..+.|||++.....-  ....+.-|...|+.+..-|      .     -..++|++.|++|+
T Consensus       329 A~~Fdet-~~klscVYndhSlYvWDvrD~~kvg--k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR  405 (1080)
T KOG1408|consen  329 ACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVG--KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR  405 (1080)
T ss_pred             EEEecCC-CceEEEEEcCceEEEEecccccccc--ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence            4557765 4678888899999999997543221  1123345777777765433      1     13589999999999


Q ss_pred             EEECCCC---ceeee----------------------------------ecccCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy6984          90 LWDLAAG---KTTRR----------------------------------FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKL  132 (380)
Q Consensus        90 vwd~~~~---~~~~~----------------------------------~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~i  132 (380)
                      +||+..+   ...+.                                  .-+-.-.+++++.+|+|++||+|...|.+++
T Consensus       406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV  485 (1080)
T KOG1408|consen  406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV  485 (1080)
T ss_pred             EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence            9998752   11100                                  0012235899999999999999999999999


Q ss_pred             EeCCCcceEEEeeCCCcCcEEEEEEcc-CCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCC--CEE
Q psy6984         133 WNTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDG--SLC  208 (380)
Q Consensus       133 wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l  208 (380)
                      |++..-.. ....++|...|-|+.|+. .-...+|++++.|+.|.+||... ..+...+.+|...|+++.|..+|  ..+
T Consensus       486 y~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  486 YDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             EEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence            99765333 233458999999999974 33456789999999999999864 34556678899999999998877  678


Q ss_pred             EEEcCCCcEEEEECCC-CcEEEEE------EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec-
Q psy6984         209 ASGGKDMNAMLWDLND-GKHLHTL------VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS-  280 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~~-~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  280 (380)
                      ++++.|..|++ +... ......+      ..+..+..++..|...+      +....++.++++|++..+|....|.+ 
T Consensus       565 iscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~------v~t~cQDrnirif~i~sgKq~k~FKgs  637 (1080)
T KOG1408|consen  565 ISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL------VVTVCQDRNIRIFDIESGKQVKSFKGS  637 (1080)
T ss_pred             EeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcce------EEEEecccceEEEeccccceeeeeccc
Confidence            89999977654 3322 1111111      12445667777776554      23345788999999999998877654 


Q ss_pred             --cccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCE
Q psy6984         281 --LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQT  358 (380)
Q Consensus       281 --~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  358 (380)
                        +.+....+...|.|-|+++.+.|.++.++|+..+.-+.                    ....|...|+.|.|++|-++
T Consensus       638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA--------------------~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA--------------------QMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh--------------------hhcCcchheeeeeecccchh
Confidence              44667889999999999999999999999875543211                    11345667889999999999


Q ss_pred             EEEEeeCCeEEEEEeee
Q psy6984         359 LFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       359 l~~g~~dg~v~iw~~~~  375 (380)
                      |++.+.||.|.||.+..
T Consensus       698 lISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             heeecCCceEEEEECch
Confidence            99999999999999863

>KOG4328|consensus

Probab=99.95  E-value=2.1e-25  Score=186.10  Aligned_cols=306  Identities=19%  Similarity=0.229  Sum_probs=216.5

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCC-CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFP-DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSG   82 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~-~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~   82 (380)
                      +........-|.++|++++|+|... +++|+|+.-|+|-+||+..+.... -....+..|...|.++.|+|. -..+++.
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-DGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-CceEEeccCCccccceEecCCChhheeee
Confidence            3344555666889999999999866 789999999999999995322211 123456789999999999985 4789999


Q ss_pred             eCCCcEEEEECCCCceeeeecc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFED--HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      |.||.|++-|++++.....+..  -...+..+.|+.+...++.+..=|...+||++...........|...|+.++++|-
T Consensus       254 SyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             ccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            9999999999987655444433  33345677888888888888877799999987765533333457779999999998


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcee----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC----CCcEEEEEE
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKL----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN----DGKHLHTLV  232 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~  232 (380)
                      ... +|+|++.|++.+|||++....    ......|...|++.-|||.+-.|++.++|..|+|||..    .-.+..++.
T Consensus       334 ~p~-~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  334 CPW-FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             Cch-heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence            664 789999999999999986422    24455799999999999988889999999999999973    111111111


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                      |+                                  ..+++...        ....+|.|+..+++.|-.-..|-++   
T Consensus       413 Hn----------------------------------~~t~RwlT--------~fKA~W~P~~~li~vg~~~r~IDv~---  447 (498)
T KOG4328|consen  413 HN----------------------------------NRTGRWLT--------PFKAAWDPDYNLIVVGRYPRPIDVF---  447 (498)
T ss_pred             cc----------------------------------Cccccccc--------chhheeCCCccEEEEeccCcceeEE---
Confidence            11                                  11122222        2356899999999998776666555   


Q ss_pred             cceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE-EeeCCeEEEEE
Q psy6984         313 AHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA-GYSDNTIRVWQ  372 (380)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-g~~dg~v~iw~  372 (380)
                              +...++++.++..+...       ..+.-..|+|-+..+++ |+..|.|.||-
T Consensus       448 --------~~~~~q~v~el~~P~~~-------tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  448 --------DGNGGQMVCELHDPESS-------TIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             --------cCCCCEEeeeccCcccc-------ccccceeecccccceeccCCccceEEEEe
Confidence                    45556655543221110       01123469999985555 44678888874

>KOG1063|consensus

Probab=99.95  E-value=5.2e-25  Score=192.52  Aligned_cols=341  Identities=21%  Similarity=0.319  Sum_probs=241.6

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--ccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      +.+-||.++|+++.|+|. ...|+++|.|.++.+|.........  .+....+.|.........|+|+++.+++-+.-|.
T Consensus       261 all~GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhcCcccceEEEEEccc-hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence            445699999999999998 5689999999999999865431111  0111223344556889999999999999999999


Q ss_pred             EEEEECCCC---ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-E--EEeeCCCcCcEEEEEEccCC
Q psy6984          88 LRLWDLAAG---KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-F--TIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        88 i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-~--~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .++|-..+.   .......+|.+.|.+++|+|.|+++++.+.|-+-|+|-.-..+. .  ....+-|.-...|++|-+. 
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence            999983322   22334578999999999999999999999999999985431111 1  1112345556889999874 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC--------------------------------cee------------------------
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTN--------------------------------CKL------------------------  185 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~--------------------------------~~~------------------------  185 (380)
                       ...|++|..+..+|+|+...                                .+.                        
T Consensus       419 -~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p  497 (764)
T KOG1063|consen  419 -DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP  497 (764)
T ss_pred             -CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence             23688999999999998631                                000                        


Q ss_pred             --------------------eEeeeCCccceEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEE-EecCceEE
Q psy6984         186 --------------------KINHSGHTGYLNTVTVSPDGSLCASGGKD-----MNAMLWDLNDGKHLHTL-VHNDIITA  239 (380)
Q Consensus       186 --------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~-~~~~~i~~  239 (380)
                                          ...+.||...|.+++.+|+|+++|+++..     ..|++|+..+-..+..+ .|.-.|+.
T Consensus       498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~  577 (764)
T KOG1063|consen  498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR  577 (764)
T ss_pred             hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence                                01124788899999999999999999865     46899998877666654 57788999


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCcee-eee---eeccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM-ETP---FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      ++|||++.+....      ..+....+|....... ...   ...|.+=|+++.|+|++.+|+|+|+|.+|++|...+.+
T Consensus       578 l~FSpdg~~LLsv------sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~  651 (764)
T KOG1063|consen  578 LAFSPDGRYLLSV------SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR  651 (764)
T ss_pred             EEECCCCcEEEEe------ecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence            9999999875432      2334445555433221 111   33455668999999999999999999999999764432


Q ss_pred             eeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecC-----CCEEEEEeeCCeEEEEEeee
Q psy6984         316 KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD-----GQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~g~~dg~v~iw~~~~  375 (380)
                      ..         .+...       ........|++++|.|-     +..+++|...|.|.+|+...
T Consensus       652 d~---------~i~~~-------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~  700 (764)
T KOG1063|consen  652 DK---------YISRF-------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR  700 (764)
T ss_pred             hh---------hhhhh-------chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence            11         11110       11233445777777773     22677899999999999763

>KOG0269|consensus

Probab=99.95  E-value=3.6e-26  Score=202.08  Aligned_cols=286  Identities=20%  Similarity=0.330  Sum_probs=217.8

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc---ceEEEEEcc-CCCEEEEEeCCCcEEEEE
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH---FISDIVLSS-DGNYALSGSWDKTLRLWD   92 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~-~~~~l~s~~~d~~i~vwd   92 (380)
                      ...+.|..+++ -..++.++. -.++|+.+........... ..++..+   ....|+|+. +.++|||++..|.|.+||
T Consensus        40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~-~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNH-RFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             cccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceee-ecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            46677888887 467777775 4888998775433221111 1122222   244577763 578999999999999999


Q ss_pred             CCC---CceeeeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          93 LAA---GKTTRRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        93 ~~~---~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      +..   .+.+..+..|...+.++.|++. ..++++||.||+|++||++........ .+.++.|+.+.|+|... ..|++
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~-~~F~s  194 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYG-NKFAS  194 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCC-ceEEE
Confidence            987   5666678899999999999874 567889999999999998765544333 35778899999999764 58899


Q ss_pred             EeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC--cEEEEEEecCceEEEEeecC
Q psy6984         169 AGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG--KHLHTLVHNDIITALCFSPN  245 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~~~~  245 (380)
                      +...|.+.+||++... ....+..|.++|.++.|+|++.+||+||.|+.|+|||..++  ..+.++...+++..+.|-|.
T Consensus       195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~  274 (839)
T KOG0269|consen  195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA  274 (839)
T ss_pred             ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence            9999999999998754 34567789999999999999999999999999999998754  35677778899999999999


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeee-eeeccccceeEEEEee-cCCEEEEeeCCCcEEEEe
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMET-PFFSLFRDVLSVAFSV-DNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~  310 (380)
                      .++....+   ....+..+.+|++.-.-+.. .+..|...++.++|-. |-..|.+++.||+|....
T Consensus       275 ~~~hLAtc---smv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~  338 (839)
T KOG0269|consen  275 RSYHLATC---SMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL  338 (839)
T ss_pred             ccchhhhh---hccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence            88654333   33457789999997654433 4556667788899954 456788999999887654

>KOG2048|consensus

Probab=99.94  E-value=4.2e-23  Score=180.31  Aligned_cols=362  Identities=17%  Similarity=0.215  Sum_probs=240.3

Q ss_pred             eeEEeEEecCcc-cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           5 TLQLRGTLNGHN-GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         5 ~~~~~~~~~~h~-~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      .+-+...+.|++ +.|-.|+|.+.  ..|++.+.+|+|.-||+....     +..........|++++.+|.++.++.|+
T Consensus        57 ~w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk-----~~~~~d~~gg~IWsiai~p~~~~l~Igc  129 (691)
T KOG2048|consen   57 NWFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLK-----QKYNIDSNGGAIWSIAINPENTILAIGC  129 (691)
T ss_pred             CceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCc-----eeEEecCCCcceeEEEeCCccceEEeec
Confidence            345667777775 56999999954  589999999999999986543     2334456667899999999999999999


Q ss_pred             CCCcEEEEECCCCceee--eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee-------CCCcCcEEE
Q psy6984          84 WDKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE-------DGHSDWVSC  154 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~-------~~~~~~v~~  154 (380)
                      .||.++..+...++...  .+...++.|.+++|+|++..+++|+.||.|++||...+.......       ......|++
T Consensus       130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS  209 (691)
T KOG2048|consen  130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS  209 (691)
T ss_pred             CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence            99988888877766543  234456789999999999999999999999999987766554211       123345788


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE----
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT----  230 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----  230 (380)
                      +.+..++   .+++|.+-|+|++||...+.+...+..|.+.|.+++.++++.++++++.|+++.-|...+.+....    
T Consensus       210 v~~Lrd~---tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~  286 (691)
T KOG2048|consen  210 VLFLRDS---TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSR  286 (691)
T ss_pred             EEEeecC---cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeecc
Confidence            8887544   599999999999999999999988999999999999999999999999999999988766543111    


Q ss_pred             -EEecCceEEEEeecCcccce--------------------eeee-----eeeeccc---------cceEEEEcCCceee
Q psy6984         231 -LVHNDIITALCFSPNRSFQK--------------------IKLD-----ISRTLQK---------SNLILYPINHGKME  275 (380)
Q Consensus       231 -~~~~~~i~~~~~~~~~~~~~--------------------~~~~-----~~~~~~~---------~~~~~~~~~~~~~~  275 (380)
                       ..|...+.+++..++.-+..                    ....     ......+         ..+.+|.+......
T Consensus       287 r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~  366 (691)
T KOG2048|consen  287 RDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQ  366 (691)
T ss_pred             ccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccc
Confidence             12444455555443310000                    0000     0000001         11122222111000


Q ss_pred             ---------eeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEe--------------------------
Q psy6984         276 ---------TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV--------------------------  320 (380)
Q Consensus       276 ---------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~--------------------------  320 (380)
                               .-.......|.+.+.||+|++++-+.- ..+++|.+.....+...                          
T Consensus       367 g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~  445 (691)
T KOG2048|consen  367 GEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFL  445 (691)
T ss_pred             cccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEE
Confidence                     011122346889999999999987652 35666665431111000                          


Q ss_pred             -ecccceE-EEeeC-c---ccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984         321 -DLETKKM-VEELR-P---DVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       321 -~~~~~~~-~~~~~-~---~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~  377 (380)
                       ......+ ..++. +   ...........+.+..++-||||++||+.+.+|.|.+|++....
T Consensus       446 ~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~  508 (691)
T KOG2048|consen  446 VSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE  508 (691)
T ss_pred             EecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence             0000000 00000 0   01111222345567789999999999999999999999987543

>KOG0647|consensus

Probab=99.94  E-value=1.5e-24  Score=171.99  Aligned_cols=254  Identities=20%  Similarity=0.285  Sum_probs=180.9

Q ss_pred             CCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCCC-cee-eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc
Q psy6984          63 HSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAAG-KTT-RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus        63 h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~-~~~-~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      -.+.|.+++||| ...+++++|+|+.|++|++... ... +....|.++|.+++|+.||..+++|+.|+.+++||+.+.+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            456799999999 4566679999999999999873 333 3345789999999999999999999999999999998875


Q ss_pred             eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEE
Q psy6984         140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML  219 (380)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  219 (380)
                      ....  ..|..+|.++.|.+......|+||++|++||.||++.......+.- .+.+.++..  ....++.+..++.|.+
T Consensus       106 ~~~v--~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~v  180 (347)
T KOG0647|consen  106 VSQV--AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAV  180 (347)
T ss_pred             eeee--eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEE
Confidence            4333  4799999999999877667899999999999999998766544432 234555432  3457888899999999


Q ss_pred             EECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE
Q psy6984         220 WDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS  299 (380)
Q Consensus       220 ~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  299 (380)
                      |+++.+....... .        ||                                    ..-.+.+++..+|....+-
T Consensus       181 ynL~n~~te~k~~-~--------Sp------------------------------------Lk~Q~R~va~f~d~~~~al  215 (347)
T KOG0647|consen  181 YNLENPPTEFKRI-E--------SP------------------------------------LKWQTRCVACFQDKDGFAL  215 (347)
T ss_pred             EEcCCCcchhhhh-c--------Cc------------------------------------ccceeeEEEEEecCCceEe
Confidence            9997764321110 0        00                                    0112457777778777788


Q ss_pred             eeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         300 SSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       300 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      |+-.|.+-+..+..+....-   -+.++.+..  +    .....--.|.+++|+|.-..|+|++.||.+.+||-..
T Consensus       216 GsiEGrv~iq~id~~~~~~n---FtFkCHR~~--~----~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda  282 (347)
T KOG0647|consen  216 GSIEGRVAIQYIDDPNPKDN---FTFKCHRST--N----SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA  282 (347)
T ss_pred             eeecceEEEEecCCCCccCc---eeEEEeccC--C----CCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence            99999998887654311100   011111100  0    0000122467899999999999999999999998653

>KOG2055|consensus

Probab=99.94  E-value=1.3e-24  Score=181.64  Aligned_cols=292  Identities=18%  Similarity=0.216  Sum_probs=206.9

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLA   94 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~   94 (380)
                      .+.|+++.|||. ..++++|+.||++++|.++... +..+  ..+.-...+|.++.|.|+|. .+++++....++.||+.
T Consensus       213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~-N~~l--qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKV-NPKL--QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCC-CceEEEecCCCcEEEEEecCcc-Chhh--eeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            579999999998 5699999999999999997542 2112  22233456789999999998 89999999999999998


Q ss_pred             CCceeee--ecccC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          95 AGKTTRR--FEDHT-KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        95 ~~~~~~~--~~~h~-~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                      +.+..+.  ..++. ..+.....+|++++++..+..|.|.+-...+...+...  .-...|..+.|+.++.  .|++++.
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSdsk--~l~~~~~  364 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSDSK--ELLASGG  364 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--eeccEEeeEEEecCCc--EEEEEcC
Confidence            8765432  22333 35677888999999999999999998865554433322  2245688899997763  5667777


Q ss_pred             CCeEEEEeCCCceeeEeeeCCc-cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccce
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHT-GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQK  250 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  250 (380)
                      +|.|.+||++...+...+.... -.-++++.+++|.|||+|+..|.|.|||..+...-.                     
T Consensus       365 ~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---------------------  423 (514)
T KOG2055|consen  365 TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---------------------  423 (514)
T ss_pred             CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---------------------
Confidence            8999999999887665544322 234667888999999999999999999975431100                     


Q ss_pred             eeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC--CCcEEEEecccceeeeEeecccceEE
Q psy6984         251 IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVDLETKKMV  328 (380)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~  328 (380)
                                          ..+.+..+......|.+++|+||.+.||-+|.  +..+|+=.           +.+....
T Consensus       424 --------------------~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH-----------vPS~TVF  472 (514)
T KOG2055|consen  424 --------------------NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH-----------VPSCTVF  472 (514)
T ss_pred             --------------------CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe-----------ccceeee
Confidence                                00111112222345789999999999988875  34555433           2222222


Q ss_pred             EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         329 EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      .++++.      ..--..+.+|+|||.|-+||.|...|.|.+|.+
T Consensus       473 sNfP~~------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  473 SNFPTS------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ccCCCC------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            222211      111234789999999999999999999999986

>KOG0289|consensus

Probab=99.94  E-value=2.6e-24  Score=178.54  Aligned_cols=282  Identities=18%  Similarity=0.263  Sum_probs=223.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      ..+..+...+..+.+++|+.|..+.++|...++.+..+++|...|+.+.|+|+...+++++.|..|++|........ ..
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-TS  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc-cc
Confidence            34677777887789999999999999999999999999999999999999999999999999999999987654433 33


Q ss_pred             eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         145 EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      ...|..+|+.+..+|++.  +|++++.|++..+.|++++........  ....+++.+|+|||.+|.+|..|+.+++||+
T Consensus       299 ~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             cccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence            457899999999999765  899999999999999999877655443  2345899999999999999999999999999


Q ss_pred             CCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-ccccceeEEEEeecCCEEEEe
Q psy6984         223 NDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       223 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~  300 (380)
                      .++..+..| .|.++|..+.|+.++-|....      ..+..+.+|+++.-+....+. ....++.++.|.+.|.+|+.+
T Consensus       377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~------add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  377 KSQTNVAKFPGHTGPVKAISFSENGYWLATA------ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             CCccccccCCCCCCceeEEEeccCceEEEEE------ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence            998877777 588999999999998664433      345669999998765433222 222368899999999999999


Q ss_pred             eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      +.|=+|++++-           .++...+-.       ....+.+....+.|....+++++++.|..++++.+
T Consensus       451 g~~l~Vy~~~k-----------~~k~W~~~~-------~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  451 GSDLQVYICKK-----------KTKSWTEIK-------ELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cceeEEEEEec-----------ccccceeee-------hhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            87766666542           122211100       11223345567889999999999999999888754

>KOG2445|consensus

Probab=99.94  E-value=4.1e-24  Score=169.99  Aligned_cols=266  Identities=15%  Similarity=0.314  Sum_probs=182.1

Q ss_pred             cCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEe
Q psy6984          61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd  134 (380)
                      .+|.+-|.++.|.+-|+++|+++.|+.|+|||.+..    ......+.|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            579999999999999999999999999999997543    35666789999999999964  589999999999999997


Q ss_pred             CCC-----cc----eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce------eeEeee-------CC
Q psy6984         135 TLA-----HC----KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK------LKINHS-------GH  192 (380)
Q Consensus       135 ~~~-----~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~-------~~  192 (380)
                      -..     +.    +...+. .....|..+.|.|..-...+++++.||.+|||+..+..      +..++.       .+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            311     00    111222 33456999999998888889999999999999875421      111111       24


Q ss_pred             ccceEEEEEcCC---CCEEEEEcCC-----CcEEEEECCCCc-EEEEEEecCceEEEEeecCcccceeeeeeeeeccccc
Q psy6984         193 TGYLNTVTVSPD---GSLCASGGKD-----MNAMLWDLNDGK-HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN  263 (380)
Q Consensus       193 ~~~i~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (380)
                      .....|+.|+|.   ..+||.|+.+     +.++||....+. ....                                 
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k---------------------------------  215 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK---------------------------------  215 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee---------------------------------
Confidence            566788999874   4578888776     466677543322 1111                                 


Q ss_pred             eEEEEcCCceeeeeeeccccceeEEEEeec----CCEEEEeeCCCcEEEEecccceeeeEee-cccceEEEeeCcccccc
Q psy6984         264 LILYPINHGKMETPFFSLFRDVLSVAFSVD----NRQIVSSSRDKTIKLWNTLAHCKFTIVD-LETKKMVEELRPDVVSQ  338 (380)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  338 (380)
                                 ...+..+..+|++++|.|+    -..||+++.|| |+||++..-+.....+ .........++... ..
T Consensus       216 -----------va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~-vs  282 (361)
T KOG2445|consen  216 -----------VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEK-VS  282 (361)
T ss_pred             -----------ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEE-ee
Confidence                       1112234455566666654    24589999999 9999875322111000 00111111111111 12


Q ss_pred             cCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         339 STKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       339 ~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      ....|...|..+.|+-.|..|++.+.||.||+|..
T Consensus       283 ~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  283 ELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            34568889999999999999999999999999964

>KOG0650|consensus

Probab=99.94  E-value=1.7e-24  Score=186.43  Aligned_cols=300  Identities=19%  Similarity=0.272  Sum_probs=208.7

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCE-EEEEeCCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNY-ALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~   86 (380)
                      +...+.||++.|.+|+..|. +..|++|++||+||+|.+....+...++      -...|.|++|+|.++. ++++..+.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~~~~vLAvA~~~  464 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLSDLCVLAVAVGE  464 (733)
T ss_pred             eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCCCceeEEEEecC
Confidence            66778999999999999996 7999999999999999987655433221      2336999999997653 33333333


Q ss_pred             cEEEEECCCC-------------------------------------ceeeeecccCCCeEEEEEeCCCCEEEEEeCC--
Q psy6984          87 TLRLWDLAAG-------------------------------------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD--  127 (380)
Q Consensus        87 ~i~vwd~~~~-------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d--  127 (380)
                      .+.|-+..-|                                     +-++....|..+|..+.|+-.|.+|++...+  
T Consensus       465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence            4555543211                                     0012234578889999999999999987764  


Q ss_pred             -CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC
Q psy6984         128 -KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS  206 (380)
Q Consensus       128 -~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  206 (380)
                       ..|.|.++.....+.-+. .....+.++.|+|...  +|+.++ ...|++||+-.++++..+......|..++++|.|.
T Consensus       545 ~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD  620 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD  620 (733)
T ss_pred             cceEEEEecccccccCchh-hcCCceeEEEecCCCc--eEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence             477888875544332222 2234588999999654  455444 56899999988777666666677899999999999


Q ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccccee
Q psy6984         207 LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL  286 (380)
Q Consensus       207 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (380)
                      .|+.|+.|+.+..+|+......                                              ...+.-|...+.
T Consensus       621 nli~gs~d~k~~WfDldlsskP----------------------------------------------yk~lr~H~~avr  654 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLSSKP----------------------------------------------YKTLRLHEKAVR  654 (733)
T ss_pred             eEEEecCCCeeEEEEcccCcch----------------------------------------------hHHhhhhhhhhh
Confidence            9999999999999998654211                                              111223445677


Q ss_pred             EEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC
Q psy6984         287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN  366 (380)
Q Consensus       287 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg  366 (380)
                      +++|++.-.+|++|+.||++.++...-..     |+-...++-.++.  +..-.......|+.+.|+|...+|+++++||
T Consensus       655 ~Va~H~ryPLfas~sdDgtv~Vfhg~VY~-----Dl~qnpliVPlK~--L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~  727 (733)
T KOG0650|consen  655 SVAFHKRYPLFASGSDDGTVIVFHGMVYN-----DLLQNPLIVPLKR--LRGHEKTNDLGVLDTIWHPRQPWLFSAGADG  727 (733)
T ss_pred             hhhhccccceeeeecCCCcEEEEeeeeeh-----hhhcCCceEeeee--ccCceeecccceEeecccCCCceEEecCCCc
Confidence            88899889999999999999998532111     2222222222110  0000111234588999999999999999999


Q ss_pred             eEEEE
Q psy6984         367 TIRVW  371 (380)
Q Consensus       367 ~v~iw  371 (380)
                      +|++|
T Consensus       728 tirlf  732 (733)
T KOG0650|consen  728 TIRLF  732 (733)
T ss_pred             eEEee
Confidence            99998

>KOG0646|consensus

Probab=99.94  E-value=2.1e-24  Score=180.68  Aligned_cols=248  Identities=17%  Similarity=0.271  Sum_probs=187.7

Q ss_pred             eEEEee-CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCe
Q psy6984          31 TILSCS-RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV  109 (380)
Q Consensus        31 ~l~t~~-~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v  109 (380)
                      +++++. .--.+.+|.+.+.+...   +  ..--.+.|.++.-+|+|.+|+.|...|.|++|.+.+|+.+..+..|-.+|
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~~---q--~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~I  126 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQVV---Q--YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSI  126 (476)
T ss_pred             heeeecccCccccccccCchhhhh---h--hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccce
Confidence            444443 33467788775433211   1  11224568999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCC-------C-cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984         110 LSVAFSVDNRQIVSSSRDKTIKLWNTL-------A-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       110 ~~~~~~~~~~~~~s~~~d~~v~iwd~~-------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                      +|+.|+-||.+|+||+.||.|.+|.+.       . ..........|.-.|+.+...+.+.+..++|++.|.++|+||+.
T Consensus       127 TcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  127 TCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             eEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence            999999999999999999999999742       1 11222344578999999999998888899999999999999999


Q ss_pred             CceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccc
Q psy6984         182 NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQK  261 (380)
Q Consensus       182 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  261 (380)
                      .+.+..... ....+.+++++|-++.+..|+.+|.|.+.++..-.....     .+.                       
T Consensus       207 ~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~-----~v~-----------------------  257 (476)
T KOG0646|consen  207 LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA-----GVN-----------------------  257 (476)
T ss_pred             cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc-----ccc-----------------------
Confidence            988776654 345799999999999999999999999988743221000     000                       


Q ss_pred             cceEEEEcCCceeeeeeecccc--ceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         262 SNLILYPINHGKMETPFFSLFR--DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                        ...+. .++.....+.+|..  +|+|++.+-||..|++|+.||.|.+||+....
T Consensus       258 --~k~~~-~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  258 --QKGRH-EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             --ccccc-cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence              00000 01111223445555  89999999999999999999999999976543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.5e-22  Score=174.06  Aligned_cols=268  Identities=13%  Similarity=0.119  Sum_probs=188.7

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      +.+++++.|+.+++||+.....     ...+..+ ..+..+.|+|+++.+ ++++.++.|++||..+++....+..+. .
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~-----~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~   74 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEV-----TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-D   74 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCce-----EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-C
Confidence            4788999999999999864321     2223333 336789999999977 567788999999999988877665543 3


Q ss_pred             eEEEEEeCCCCEEEEE-eCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-eEEEEeCCCceee
Q psy6984         109 VLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-MVKVWNLTNCKLK  186 (380)
Q Consensus       109 v~~~~~~~~~~~~~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~  186 (380)
                      +..++|+|+++.++++ +.++.+++||+.+.........  ...+.+++++|++.  +++++..++ .+.+||.++.+..
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGK--IVVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCC--EEEEEecCCCeEEEEeCCCCeEE
Confidence            5678999999977654 5689999999876544433322  22357899999765  566666554 5778899876654


Q ss_pred             EeeeCCccceEEEEEcCCCCEEEEE-cCCCcEEEEECCCCcEEEEEEecC--------ceEEEEeecCcccceeeeeeee
Q psy6984         187 INHSGHTGYLNTVTVSPDGSLCASG-GKDMNAMLWDLNDGKHLHTLVHND--------IITALCFSPNRSFQKIKLDISR  257 (380)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~  257 (380)
                      ..... ...+..++|+|++++++++ ..++.+++||+.+++.+..+....        ....++|+|++.+.....    
T Consensus       151 ~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~----  225 (300)
T TIGR03866       151 DNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL----  225 (300)
T ss_pred             EEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc----
Confidence            43322 2345778999999988554 568999999999987766553211        134577888876532211    


Q ss_pred             eccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe-eCCCcEEEEecccce
Q psy6984         258 TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHC  315 (380)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~  315 (380)
                       .....+.+|+..+++..... .+...+.+++|+|+|++|+++ +.+|.|++||.....
T Consensus       226 -~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       226 -GPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             -CCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence             12456888998877665433 334568899999999999886 468999999875544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445|consensus

Probab=99.94  E-value=9.7e-24  Score=167.91  Aligned_cols=270  Identities=18%  Similarity=0.340  Sum_probs=191.9

Q ss_pred             cCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCCCcEEE
Q psy6984          13 NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWDKTLRL   90 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~v   90 (380)
                      .+|.+-|+++.|.+- +..+|||+.|++++|||...+...... ....+.|...|..+.|.+  -|+.+|+++.|+++.|
T Consensus        10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~-Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSC-TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEE-eeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            489999999999975 899999999999999998655544433 345678999999999864  4899999999999999


Q ss_pred             EECCCC---------ceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEe------------eCC
Q psy6984          91 WDLAAG---------KTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIV------------EDG  147 (380)
Q Consensus        91 wd~~~~---------~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~------------~~~  147 (380)
                      |.=...         ....++......|+++.|.|  -|-.+|+++.||.+|||+....-.+...            ...
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            975211         12334556778899999998  4678999999999999986432211111            012


Q ss_pred             CcCcEEEEEEccCCC-CCEEEEEeCC-----CeEEEEeCCCce----eeEeeeCCccceEEEEEcCC-C---CEEEEEcC
Q psy6984         148 HSDWVSCVRFSPNHQ-NPIIVSAGWD-----RMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPD-G---SLCASGGK  213 (380)
Q Consensus       148 ~~~~v~~~~~~~~~~-~~~l~s~~~d-----~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~-~---~~l~~~~~  213 (380)
                      +.....|+.|+|..- .++|+.|+.+     +.++||......    ....+.+|..+|..++|.|+ |   ..||+++.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            445677999997653 3456666654     378899775433    33456789999999999996 3   37899999


Q ss_pred             CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeec
Q psy6984         214 DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD  293 (380)
Q Consensus       214 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  293 (380)
                      || |+||.+......-   .++.+    ..|+...            +  +   +   -+....+-+|.++|+.+.|+-.
T Consensus       248 Dg-v~I~~v~~~~s~i---~~ee~----~~~~~~~------------~--l---~---v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAI---EEEEV----LAPDLMT------------D--L---P---VEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             Cc-EEEEEEeeccchh---hhhcc----cCCCCcc------------c--c---c---eEEeeeccCCCCceEEEEEeee
Confidence            99 9999886432100   00000    0111100            0  0   0   0122345567789999999999


Q ss_pred             CCEEEEeeCCCcEEEEecc
Q psy6984         294 NRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~  312 (380)
                      |..|+|.|.||.||+|...
T Consensus       300 GtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  300 GTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeEEeecCCCceeeehhhh
Confidence            9999999999999999753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.4e-22  Score=175.58  Aligned_cols=269  Identities=14%  Similarity=0.129  Sum_probs=189.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEE
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCV  155 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  155 (380)
                      +.+++++.|+.|++||+.+++....+..+. .+.+++|+|+++.+ ++++.++.+++||..+......+. .+. .+..+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~-~~~~~   78 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SGP-DPELF   78 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CCC-CccEE
Confidence            578899999999999999998888877554 46789999999976 567788999999987655443332 222 24678


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC-cEEEEECCCCcEEEEEEec
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM-NAMLWDLNDGKHLHTLVHN  234 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~  234 (380)
                      +++|+++ .++++++.++.|++||+.+.+....+.. ...+..++++|+|.++++++.++ .+.+||..+++........
T Consensus        79 ~~~~~g~-~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~  156 (300)
T TIGR03866        79 ALHPNGK-ILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD  156 (300)
T ss_pred             EECCCCC-EEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC
Confidence            8988764 2445566789999999988765544432 23467899999999999888765 5677899888776665555


Q ss_pred             CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc-------cceeEEEEeecCCEEEE-eeCCCcE
Q psy6984         235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF-------RDVLSVAFSVDNRQIVS-SSRDKTI  306 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~s-~~~dg~v  306 (380)
                      ..+..++|+|++......     ...++.+.+|+..+++....+....       .....++|+|++++++. .+.++.|
T Consensus       157 ~~~~~~~~s~dg~~l~~~-----~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i  231 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVS-----SEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV  231 (300)
T ss_pred             CCccEEEECCCCCEEEEE-----cCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence            667788999987653222     2235678899998876544332111       12346889999998544 4556789


Q ss_pred             EEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEEeeee
Q psy6984         307 KLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQVSVT  376 (380)
Q Consensus       307 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~~~~~  376 (380)
                      .+||..+......           ..          ....+.+++|+|+|++|++++ .+|.|++||+...
T Consensus       232 ~v~d~~~~~~~~~-----------~~----------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~  281 (300)
T TIGR03866       232 AVVDAKTYEVLDY-----------LL----------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL  281 (300)
T ss_pred             EEEECCCCcEEEE-----------EE----------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            9998644322111           10          011356789999999998764 6899999998643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1274|consensus

Probab=99.93  E-value=3.1e-23  Score=186.96  Aligned_cols=245  Identities=21%  Similarity=0.305  Sum_probs=191.0

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .|++.-+.|.+.|+ +++|.+|+.||.|++|+...+..    .+..+..+...|.+++.  ++++|++|+.++.|.+|..
T Consensus        11 aht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e----~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEE----EPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCC-CCEEEEecCCCceEEeecCCccc----CCchhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence            68899999999998 68999999999999999765421    11222236667777765  4669999999999999999


Q ss_pred             CCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          94 AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        94 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      .+++.--.+....-++++++++.+|+.+|.||.|-.|++-++...... ....+|..+|.++.|+|++  .+|++.+.||
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-~~lrgh~apVl~l~~~p~~--~fLAvss~dG  160 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-KVLRGHDAPVLQLSYDPKG--NFLAVSSCDG  160 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-eeecccCCceeeeeEcCCC--CEEEEEecCc
Confidence            887655444455678999999999999999999999999987654333 3345899999999999975  4899999999


Q ss_pred             eEEEEeCCCceeeEeeeC--------CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecC
Q psy6984         174 MVKVWNLTNCKLKINHSG--------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPN  245 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~  245 (380)
                      .|++||+.++.+...+.+        ....+..++|+|+|..++.-+.|+.|.+|+....+....+..+           
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-----------  229 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-----------  229 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-----------
Confidence            999999988665433321        1345677999999999999999999999998776544332111           


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                                                        .+...+.+++|+|+|+|||+++.||.|.+||..+
T Consensus       230 ----------------------------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  230 ----------------------------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ----------------------------------ccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                                              0112256889999999999999999999998643

>KOG4283|consensus

Probab=99.93  E-value=9.5e-24  Score=167.07  Aligned_cols=219  Identities=23%  Similarity=0.328  Sum_probs=165.0

Q ss_pred             cCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce----------ee-----eecccCCCeEEEEEeC-CCCEEEE
Q psy6984          61 KGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAAGKT----------TR-----RFEDHTKDVLSVAFSV-DNRQIVS  123 (380)
Q Consensus        61 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~----------~~-----~~~~h~~~v~~~~~~~-~~~~~~s  123 (380)
                      ..|.+.|+.+.+.+ .|+|+++|+.||.|.+||+++...          ..     .-.+|+-.|..+-|-| |.-.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46888999999986 689999999999999999976421          11     1135777899999988 4556778


Q ss_pred             EeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC-CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEc
Q psy6984         124 SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ-NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVS  202 (380)
Q Consensus       124 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~  202 (380)
                      ++.|.++++||..+-+.....  .-++.|.+-+++|-.. .-++++|..+-.|++-|+.++.....+.||.+.|.++.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            999999999998764433222  2345677777777654 3466778888999999999999999999999999999999


Q ss_pred             CCCCE-EEEEcCCCcEEEEECCCCc-EEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee
Q psy6984         203 PDGSL-CASGGKDMNAMLWDLNDGK-HLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF  279 (380)
Q Consensus       203 ~~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (380)
                      |..++ |++|+.||.|++||++... ....+. |+.           ..                       ......-.
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----------k~-----------------------~p~~~~n~  243 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----------KR-----------------------PPILKTNT  243 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccC-----------cc-----------------------Cccccccc
Confidence            98886 6789999999999997652 222221 110           00                       00000112


Q ss_pred             ccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         280 SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       280 ~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      .|.+.+..++|+.++.++++++.|..+++|+...++
T Consensus       244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             cccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            456778899999999999999999999999976553

>KOG1274|consensus

Probab=99.93  E-value=1.4e-23  Score=189.10  Aligned_cols=253  Identities=21%  Similarity=0.305  Sum_probs=194.1

Q ss_pred             cCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc
Q psy6984          61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      ..|..+.+.++|.|+|+.|++++.||.|++|+.... +....+..+...|.+++.  .+.+|++++.+++|..|......
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            368888899999999999999999999999998765 344444337777877775  45699999999999999876544


Q ss_pred             eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEE
Q psy6984         140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML  219 (380)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  219 (380)
                      ...++ ...+-++++++|+.++.  .++.|+.|-.|++.++.+......+.+|.++|.++.++|++++||+.+-||.+++
T Consensus        88 ~~~iL-~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i  164 (933)
T KOG1274|consen   88 EDTIL-ARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI  164 (933)
T ss_pred             cccee-eeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence            33222 13455789999987654  6899999999999999998888889999999999999999999999999999999


Q ss_pred             EECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE
Q psy6984         220 WDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS  299 (380)
Q Consensus       220 ~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  299 (380)
                      ||+.++....++..-.        |+..+                               ...+.+..++|+|+|..|+.
T Consensus       165 w~~~~~~~~~tl~~v~--------k~n~~-------------------------------~~s~i~~~~aW~Pk~g~la~  205 (933)
T KOG1274|consen  165 WDLQDGILSKTLTGVD--------KDNEF-------------------------------ILSRICTRLAWHPKGGTLAV  205 (933)
T ss_pred             EEcccchhhhhcccCC--------ccccc-------------------------------cccceeeeeeecCCCCeEEe
Confidence            9998876554432110        00000                               00122446899999999998


Q ss_pred             eeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         300 SSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       300 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      .+.|+.|++++.....           ....++.+.       +...+..+.|||.|++||+++-||.|-|||+.+
T Consensus       206 ~~~d~~Vkvy~r~~we-----------~~f~Lr~~~-------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  206 PPVDNTVKVYSRKGWE-----------LQFKLRDKL-------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eccCCeEEEEccCCce-----------eheeecccc-------cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999754322           222233222       122367899999999999999999999999984

>KOG1036|consensus

Probab=99.93  E-value=1.5e-23  Score=166.89  Aligned_cols=251  Identities=21%  Similarity=0.302  Sum_probs=177.6

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      .+.|+.+.|+|.++.|+++++||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++....+
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence            567999999999999999999999999999887665555 5889999999976 66889999999999999887665443


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                        ..|...+.|+.+++..  ..+++|++|++|++||.+.......+ .....|.++..  .|..|++|+.|..+.+||++
T Consensus        91 --gth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR  163 (323)
T KOG1036|consen   91 --GTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLR  163 (323)
T ss_pred             --ccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccc-ccCceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence              4688999999999753  36999999999999999863332222 23346777755  56789999999999999998


Q ss_pred             CCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984         224 DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD  303 (380)
Q Consensus       224 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  303 (380)
                      +-....+..                            ..                 +....+.++++-|++.-++.++-|
T Consensus       164 n~~~~~q~r----------------------------eS-----------------~lkyqtR~v~~~pn~eGy~~sSie  198 (323)
T KOG1036|consen  164 NLDEPFQRR----------------------------ES-----------------SLKYQTRCVALVPNGEGYVVSSIE  198 (323)
T ss_pred             cccchhhhc----------------------------cc-----------------cceeEEEEEEEecCCCceEEEeec
Confidence            654221100                            00                 011234577888877777888889


Q ss_pred             CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         304 KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       304 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      |.|.+=.+....     ....++....-  ...........-+|.+++|+|--+++|||+.||.|.+||+..
T Consensus       199 GRVavE~~d~s~-----~~~skkyaFkC--Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  199 GRVAVEYFDDSE-----EAQSKKYAFKC--HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             ceEEEEccCCch-----HHhhhceeEEe--eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence            988763222110     00011111100  000001111122478999999999999999999999999753

>KOG0269|consensus

Probab=99.93  E-value=3.9e-25  Score=195.60  Aligned_cols=223  Identities=22%  Similarity=0.418  Sum_probs=179.7

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCCC
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      .+..+.|+..+.++||||+..|.|.+||+.+.-.+  .....+..|+..++++.|++ ...+|++||.||.|++||++..
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn--k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN--KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccc--hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            45567788777899999999999999999763111  12345789999999999987 4689999999999999999999


Q ss_pred             ceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984          97 KTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      +....+.+....|++++|+| .+..|+++...|.+++||++...+......+|..+|.|+.|+|+.  .+|+|||.|+.|
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr--~~lATGGRDK~v  244 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR--EWLATGGRDKMV  244 (839)
T ss_pred             cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC--ceeeecCCCccE
Confidence            99999999999999999998 567899999999999999987665555566899999999999954  489999999999


Q ss_pred             EEEeCCCceeeEeeeCC-ccceEEEEEcCCCCE-EEEEc--CCCcEEEEECCCCcEE-EEE-EecCceEEEEeec
Q psy6984         176 KVWNLTNCKLKINHSGH-TGYLNTVTVSPDGSL-CASGG--KDMNAMLWDLNDGKHL-HTL-VHNDIITALCFSP  244 (380)
Q Consensus       176 ~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-l~~~~--~d~~i~i~d~~~~~~~-~~~-~~~~~i~~~~~~~  244 (380)
                      +|||+.+.+......-+ ..++.++.|-|...+ |++++  .|..|++||++..-.. .++ .|.+.++.++|..
T Consensus       245 kiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             EEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            99999876544333222 467899999997765 55554  4889999999876433 333 5777788888854

>KOG0321|consensus

Probab=99.93  E-value=1.1e-23  Score=182.79  Aligned_cols=285  Identities=19%  Similarity=0.272  Sum_probs=194.7

Q ss_pred             CCCCCeEEEeeCCCeEEEeecCCCCCC-cccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee--e
Q psy6984          26 PKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR--F  102 (380)
Q Consensus        26 ~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~  102 (380)
                      |.+...|+.+..||.|.++|....... .....+....|.+.|.++.|.|...+|++++-|.++++||++.++....  +
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~  140 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN  140 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee
Confidence            444568999999999999997653222 1112345678999999999999777899999999999999999888776  8


Q ss_pred             cccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcce--------------------E------EEeeCCCcCcEEE-
Q psy6984         103 EDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCK--------------------F------TIVEDGHSDWVSC-  154 (380)
Q Consensus       103 ~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~--------------------~------~~~~~~~~~~v~~-  154 (380)
                      .+|.+.|.+++|.|+. ..|++|++||.+.|||++-...                    .      ......+...|.+ 
T Consensus       141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss  220 (720)
T KOG0321|consen  141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS  220 (720)
T ss_pred             cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence            8999999999999955 5788999999999999532110                    0      0000122222333 


Q ss_pred             --EEEccCCCCCEEEEEeC-CCeEEEEeCCCceeeE--------eeeCC---ccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         155 --VRFSPNHQNPIIVSAGW-DRMVKVWNLTNCKLKI--------NHSGH---TGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       155 --~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~--------~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                        +.+..+  +..|++++. |+.|++||+++.....        .+..|   ...+.++..+..|.++.+.+.|+.|++|
T Consensus       221 vTvv~fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~y  298 (720)
T KOG0321|consen  221 VTVVLFKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFY  298 (720)
T ss_pred             eEEEEEec--cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEE
Confidence              333333  336787766 9999999998753221        11223   3457888889999999888889999999


Q ss_pred             ECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe
Q psy6984         221 DLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       221 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  300 (380)
                      |+.+-..               +|...+..                      +....++.      .-..+|++.++++|
T Consensus       299 nm~s~s~---------------sP~~~~sg----------------------~~~~sf~v------ks~lSpd~~~l~Sg  335 (720)
T KOG0321|consen  299 NMRSLSI---------------SPVAEFSG----------------------KLNSSFYV------KSELSPDDCSLLSG  335 (720)
T ss_pred             eccccCc---------------CchhhccC----------------------cccceeee------eeecCCCCceEecc
Confidence            9865431               12111100                      00000000      12457999999999


Q ss_pred             eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC-EEEEEeeCCeEEEEEee
Q psy6984         301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ-TLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~g~~dg~v~iw~~~  374 (380)
                      +.|...++|.+.....                   .......|...|+.++|.|..- -++|+++|..++||++.
T Consensus       336 Ssd~~ayiw~vs~~e~-------------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  336 SSDEQAYIWVVSSPEA-------------------PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             CCCcceeeeeecCccC-------------------ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence            9999999997532110                   1112234556788999988633 36677999999999983

>KOG0267|consensus

Probab=99.93  E-value=1.6e-25  Score=196.56  Aligned_cols=255  Identities=24%  Similarity=0.429  Sum_probs=204.2

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeE
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL  110 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  110 (380)
                      ++..+..+-.+++|+..           .+..|...|.++..-..++.+++|+.|..+-+|....-..+..+.+|..+|.
T Consensus         6 ~~m~~~~~t~Lr~~~~~-----------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe   74 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR-----------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE   74 (825)
T ss_pred             ccceeeeeeccccccch-----------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence            34444445566677532           2457888899998877889999999999999999877667777899999999


Q ss_pred             EEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee
Q psy6984         111 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS  190 (380)
Q Consensus       111 ~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  190 (380)
                      ++.|+++..++++|+.+|+|++||+.....+.. ..+|...+..+.|+|-+.  ++++|+.|..+++||++...+...+.
T Consensus        75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-Ltgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~  151 (825)
T KOG0267|consen   75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-LTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYK  151 (825)
T ss_pred             eeecCcchhhhcccccCCceeeeehhhhhhhhh-hhccccCcceeeeccceE--EeccccccccceehhhhccCceeeec
Confidence            999999999999999999999999876554433 347888899999999654  67889999999999999888888888


Q ss_pred             CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC
Q psy6984         191 GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN  270 (380)
Q Consensus       191 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (380)
                      +|...+..+.|+|+|++++.|+.|..+++||...|+.+..+.                                      
T Consensus       152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~--------------------------------------  193 (825)
T KOG0267|consen  152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK--------------------------------------  193 (825)
T ss_pred             CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccc--------------------------------------
Confidence            999999999999999999999999999999998776544332                                      


Q ss_pred             CceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEE
Q psy6984         271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSL  350 (380)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (380)
                               .|...+.++.|+|..-++++|+.|++|++||+           ++..++....+         ....|.+.
T Consensus       194 ---------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl-----------etfe~I~s~~~---------~~~~v~~~  244 (825)
T KOG0267|consen  194 ---------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL-----------ETFEVISSGKP---------ETDGVRSL  244 (825)
T ss_pred             ---------cccccccccccCchhhhhccCCCCceeeeecc-----------ceeEEeeccCC---------ccCCceee
Confidence                     33445566778888888999999999999975           44444432222         23456788


Q ss_pred             EEecCCCEEEEEeeCC
Q psy6984         351 AWSTDGQTLFAGYSDN  366 (380)
Q Consensus       351 ~~s~dg~~l~~g~~dg  366 (380)
                      .|+|+|+.+++|..+.
T Consensus       245 ~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  245 AFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eecCCceeeecCchhh
Confidence            9999999998876544

>KOG0267|consensus

Probab=99.92  E-value=1.6e-25  Score=196.60  Aligned_cols=229  Identities=24%  Similarity=0.433  Sum_probs=199.4

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      ++-.|...|.++.. .+....+++|+.|-.+-+|.+.....     ...+.+|...|.++.|+++-.+|++|+.+|.|++
T Consensus        23 ~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~-----i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~   96 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNA-----ITSLTGHESPIESLTFDTSERLLAAGSASGTIKV   96 (825)
T ss_pred             hhhhhhhhhceeee-eccceeeccCCCceeeccccccCCch-----hheeeccCCcceeeecCcchhhhcccccCCceee
Confidence            45578888998887 44467899999999999998865432     2237899999999999999999999999999999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      ||+..++.++.+.+|...+..+.|+|-+.++++|+.|.-+++||.+...+... ..+|...+.+++|.|++.  ++++++
T Consensus        97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-~~s~~~vv~~l~lsP~Gr--~v~~g~  173 (825)
T KOG0267|consen   97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-YKSHTRVVDVLRLSPDGR--WVASGG  173 (825)
T ss_pred             eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee-ecCCcceeEEEeecCCCc--eeeccC
Confidence            99999999999999999999999999999999999999999999875444333 346888999999999875  788999


Q ss_pred             CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCccc
Q psy6984         171 WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSF  248 (380)
Q Consensus       171 ~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~  248 (380)
                      .|.++++||+..+++...+..|.+.+..+.|+|..-++++|+.|+.+++||+++.+.+.... ....+.+..|+|++..
T Consensus       174 ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~  252 (825)
T KOG0267|consen  174 EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKI  252 (825)
T ss_pred             CcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCcee
Confidence            99999999999999999999999999999999999999999999999999999877665553 3567889999998754

>KOG1445|consensus

Probab=99.92  E-value=1.3e-23  Score=182.28  Aligned_cols=216  Identities=20%  Similarity=0.295  Sum_probs=156.4

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEEEEeCCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      -+..|.+|.+-|+++.|+|..+.+|||||.|..|++|.+.+.....-.......+|. -.|.++.|+|..+-|+..+..|
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            355678999999999999987889999999999999999854322111122233444 4588999999877777777789


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      +++|||+.+++.+..+.+|...|.+..|+.||..+++++.|+.|+|||.+..-...+..++|... ..-++..-++...|
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~-rdsRv~w~Gn~~rl  229 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM-RDSRVLWAGNWERL  229 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc-hhheeeeccchhhh
Confidence            99999999999999999999999999999999999999999999999987655544445677653 33222222333345


Q ss_pred             EEEeCC----CeEEEEeCCCcee---eEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEECCCC
Q psy6984         167 VSAGWD----RMVKVWNLTNCKL---KINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLNDG  225 (380)
Q Consensus       167 ~s~~~d----~~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~  225 (380)
                      ++.+.+    ..|++||.+....   ...+.. ...|.---++||.++++ +|-.+.+++.+.+...
T Consensus       230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~-stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~  295 (1012)
T KOG1445|consen  230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS-STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR  295 (1012)
T ss_pred             hhcccchhhheeeeeeeccccCCcceeEEeec-ccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence            555544    5799999876432   112221 22344456789888655 4555788888877543

>KOG1273|consensus

Probab=99.92  E-value=1.7e-22  Score=161.46  Aligned_cols=280  Identities=17%  Similarity=0.263  Sum_probs=195.3

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED  146 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~  146 (380)
                      ..|+.|++-|.+||+|..||.|.|||+.+....+.+..|..+|.+++||+||+.|+|+|+|..+.+||+..+.....+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6799999999999999999999999999999889999999999999999999999999999999999998876554443 


Q ss_pred             CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee---CC-ccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS---GH-TGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                       ...+|+...|+|..++..+++- .+..-.+-++.+.+...-..   +. .....+..|++.|+++.+|...|.+.++|.
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence             4567999999998776555543 33334444554322211111   11 112223358899999999999999999999


Q ss_pred             CCCcEEEEEEec--CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc----e--eeeeeeccc-----cceeEEE
Q psy6984         223 NDGKHLHTLVHN--DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG----K--METPFFSLF-----RDVLSVA  289 (380)
Q Consensus       223 ~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~-----~~v~~~~  289 (380)
                      .+-+.+..+...  ..|..+.++-.+.+..+.      ..+.-++.|+...-    +  +..+.....     -.-.+++
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiN------tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc  256 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIIN------TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC  256 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEe------cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence            998887776533  457777777766554332      22334555554311    1  111111100     1123689


Q ss_pred             EeecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeE
Q psy6984         290 FSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI  368 (380)
Q Consensus       290 ~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v  368 (380)
                      ||.+|.|++.++. -..++||....+.-+.++....                   +....++.|+|-...|++- +.|.|
T Consensus       257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-------------------gE~l~DV~whp~rp~i~si-~sg~v  316 (405)
T KOG1273|consen  257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-------------------GEELLDVNWHPVRPIIASI-ASGVV  316 (405)
T ss_pred             ecCCccEEEeccccceeEEEEecCCcceeeeecCCc-------------------hhheeecccccceeeeeec-cCCce
Confidence            9999999887764 4579999765554443332211                   1123478899998888865 78999


Q ss_pred             EEEEeee
Q psy6984         369 RVWQVSV  375 (380)
Q Consensus       369 ~iw~~~~  375 (380)
                      +||.+..
T Consensus       317 ~iw~~~~  323 (405)
T KOG1273|consen  317 YIWAVVQ  323 (405)
T ss_pred             EEEEeec
Confidence            9998754

>KOG2048|consensus

Probab=99.92  E-value=2e-21  Score=169.99  Aligned_cols=277  Identities=17%  Similarity=0.227  Sum_probs=205.0

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc-ceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH-FISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      ..|++++++.+ .+.||.+-.||.|.+|++...  .  .....+.++.+ .|..++|++ +.+|++.+.+|.|.-||+.+
T Consensus        26 s~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~--w--~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   26 SEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNN--W--FLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             cceEEEEEecc-CCceeeeccCCcEEEEccCCC--c--eeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence            67999999988 578999999999999998753  1  22334555555 599999994 66789999999999999999


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE-eeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      .+....+....++|.+++.+|.+..++.|+.||.+..++...+..... ........+-++.|+|++.  .+++|+.||.
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~--~i~~Gs~Dg~  177 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT--KIAGGSIDGV  177 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc--EEEecccCce
Confidence            999999999999999999999999999999999777776544322211 1222346789999999764  4899999999


Q ss_pred             EEEEeCCCceeeEee--------eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecC
Q psy6984         175 VKVWNLTNCKLKINH--------SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN  245 (380)
Q Consensus       175 v~iwd~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~  245 (380)
                      |++||...+......        ++...-|+++.+-.++ .+++|...|.|.+||...+..++.+ .|.+.+.+++..++
T Consensus       178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~  256 (691)
T KOG2048|consen  178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN  256 (691)
T ss_pred             EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence            999999887544311        1133457888877544 7789999999999999999887766 47888888888877


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCcee----eeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKM----ETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      +......      ..+..+..|.....+-    ......|..++.+++..++  .+++|+.|.++.+=.
T Consensus       257 ~d~vfsa------Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  257 EDRVFSA------GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             CCeEEEc------cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence            5442221      1223333333333221    1223345567888888766  899999999887753

>KOG0646|consensus

Probab=99.92  E-value=5.2e-23  Score=172.37  Aligned_cols=220  Identities=23%  Similarity=0.349  Sum_probs=180.4

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      .|.|.++.-+|. +.+++.|...|.+.+|.+.....     ...+.+|=-.|+|+.|+.||.+|+|||.||.|++|.+.+
T Consensus        81 Pg~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~L-----L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   81 PGPVHALASSNL-GYFLLAGTISGNLYLWELSSGIL-----LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             ccceeeeecCCC-ceEEEeecccCcEEEEEeccccH-----HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence            368999999887 77888887999999999876542     334567878899999999999999999999999998742


Q ss_pred             ---------CceeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          96 ---------GKTTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        96 ---------~~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                               -++...+..|.-+|+++...+-  ..+++|+|.|.++++||+..+..+..+.  ....+.++++.|...  
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~--  230 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAER--  230 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEccccc--
Confidence                     3567788899999999988764  4589999999999999987765544432  345688999998654  


Q ss_pred             EEEEEeCCCeEEEEeCCCce----------------eeEeeeCCcc--ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         165 IIVSAGWDRMVKVWNLTNCK----------------LKINHSGHTG--YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~----------------~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      .++.|+.+|.|.+.++....                ....+.||..  .|+|++++-||.+|++|+.||.+++||+.+.+
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            78899999999988875422                2234557877  99999999999999999999999999999998


Q ss_pred             EEEEEE-ecCceEEEEeecC
Q psy6984         227 HLHTLV-HNDIITALCFSPN  245 (380)
Q Consensus       227 ~~~~~~-~~~~i~~~~~~~~  245 (380)
                      .++++. ...+|+.+.+.|-
T Consensus       311 ~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  311 CIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             HHHHHhhhccccceeEeecc
Confidence            888887 6788888887553

>KOG0270|consensus

Probab=99.91  E-value=3.6e-23  Score=172.32  Aligned_cols=195  Identities=22%  Similarity=0.295  Sum_probs=155.9

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCccccc----------------ccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEE
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQ----------------KRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLW   91 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~----------------~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vw   91 (380)
                      ++++|.|..|-.|.|||++-.+..+....                ....+|++.|..+.|+.. .+.||+||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            57999999999999999975443221100                013479989989998865 4679999999999999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      |+.++++...+..|.+.|.++.|+| ....+++|+.|++|.+.|.+...... ..-.....|..+.|.|.... .++++.
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~-~~wk~~g~VEkv~w~~~se~-~f~~~t  349 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG-KEWKFDGEVEKVAWDPHSEN-SFFVST  349 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-ceEEeccceEEEEecCCCce-eEEEec
Confidence            9999999999999999999999998 56788999999999999977311110 00112345888999987654 677788


Q ss_pred             CCCeEEEEeCCCc-eeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCC
Q psy6984         171 WDRMVKVWNLTNC-KLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       171 ~d~~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~  225 (380)
                      .||+|+-+|+++. ++......|.+.|.++.+++.- .++++++.|+.+++|++...
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            9999999999986 7788889999999999999864 46889999999999998643

>KOG0302|consensus

Probab=99.91  E-value=5e-23  Score=168.13  Aligned_cols=218  Identities=22%  Similarity=0.337  Sum_probs=171.4

Q ss_pred             eEEeEEecCcccceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCCCC-----------cccccccccCCCcceEEEEEc
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDDTN-----------YGVPQKRLKGHSHFISDIVLS   73 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~~   73 (380)
                      +++....-+|.+.++.+...+- ...+.++-+..|.|.||++......           ...|...+.+|...=+.+.||
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWS  220 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWS  220 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecc
Confidence            5566667789999999987764 2457788889999999998642110           012445667888888899999


Q ss_pred             cC-CCEEEEEeCCCcEEEEECCCCce---eeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCc-ceEEEeeCC
Q psy6984          74 SD-GNYALSGSWDKTLRLWDLAAGKT---TRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAH-CKFTIVEDG  147 (380)
Q Consensus        74 ~~-~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~-~~~~~~~~~  147 (380)
                      |- ...|++|..-+.|++|...++.-   ...+.+|...|-.+.|+|.. ..|+++|.|++|+|||++.+ .........
T Consensus       221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA  300 (440)
T KOG0302|consen  221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA  300 (440)
T ss_pred             cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence            83 23589999999999999988643   33456799999999999955 47889999999999998875 233344468


Q ss_pred             CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc---eeeEeeeCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECC
Q psy6984         148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC---KLKINHSGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       148 ~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~  223 (380)
                      |...|+.|.|+..  .++|++|+.||+++|||++..   ..+..+.-|..+|+++.|+|. ...|++++.|.+|.+||+.
T Consensus       301 h~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  301 HNSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             cCCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            8889999999864  448999999999999999874   345677789999999999995 5578899999999999986


Q ss_pred             CC
Q psy6984         224 DG  225 (380)
Q Consensus       224 ~~  225 (380)
                      ..
T Consensus       379 vE  380 (440)
T KOG0302|consen  379 VE  380 (440)
T ss_pred             cc
Confidence            43

>KOG0639|consensus

Probab=99.91  E-value=5.5e-23  Score=173.81  Aligned_cols=237  Identities=19%  Similarity=0.304  Sum_probs=190.6

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      +.|.++...|+ +..|++|+.-.++.|||+......  + ...++.-.-..++++++||.+..+++..||.|.|||+.+.
T Consensus       466 nyiRSckL~pd-grtLivGGeastlsiWDLAapTpr--i-kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  466 NYIRSCKLLPD-GRTLIVGGEASTLSIWDLAAPTPR--I-KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             cceeeeEecCC-CceEEeccccceeeeeeccCCCcc--h-hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence            56778888887 688999999999999998754321  1 1233443445677899999999999999999999999999


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK  176 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~  176 (380)
                      ..++.+.+|...+.||..++||..|.||+-|++||.||++....+..  ......|.++.++|++.  .++.|-.++.+.
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~d--WlavGMens~ve  617 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGD--WLAVGMENSNVE  617 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCcc--ceeeecccCcEE
Confidence            99999999999999999999999999999999999999887655432  23456688999999765  588888888888


Q ss_pred             EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeee
Q psy6984         177 VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDIS  256 (380)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  256 (380)
                      +......+. ..+.-|...|.++.|.+.|+++++.+.|..+..|...-|..+....                        
T Consensus       618 vlh~skp~k-yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------------------------  672 (705)
T KOG0639|consen  618 VLHTSKPEK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------  672 (705)
T ss_pred             EEecCCccc-eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------------------------
Confidence            887665433 3445688899999999999999999999999999876665432211                        


Q ss_pred             eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         257 RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                                              ..+.|+++..|.|++|++||+.|..-.+|.
T Consensus       673 ------------------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  673 ------------------------ESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             ------------------------ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence                                    124577888899999999999998877774

>KOG1273|consensus

Probab=99.91  E-value=8.1e-22  Score=157.58  Aligned_cols=279  Identities=15%  Similarity=0.228  Sum_probs=202.8

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT   98 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   98 (380)
                      -+++.|++- +.+||.|..||.|.+||+....     ....+.+|..+|.+++||+||+.|+|+|.|..|.+||+..|.+
T Consensus        26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~   99 (405)
T KOG1273|consen   26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP   99 (405)
T ss_pred             cceEEeccC-cceeeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc
Confidence            788999997 7899999999999999986533     3345789999999999999999999999999999999999998


Q ss_pred             eeeecccCCCeEEEEEeCCCCEEEEEe-CCC--cEEEEeCCCcceEEEeeCCCcCc-EEEEEEccCCCCCEEEEEeCCCe
Q psy6984          99 TRRFEDHTKDVLSVAFSVDNRQIVSSS-RDK--TIKLWNTLAHCKFTIVEDGHSDW-VSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~--~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      ++.++ ...+|....|+|..+..+.++ .+.  .+..++...+..+..-..+..+. ..+..|.+.  ..++++|...|.
T Consensus       100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~--g~yIitGtsKGk  176 (405)
T KOG1273|consen  100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR--GKYIITGTSKGK  176 (405)
T ss_pred             eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCC--CCEEEEecCcce
Confidence            88775 457899999998655443332 222  22222211111111111111111 123345554  458999999999


Q ss_pred             EEEEeCCCceeeEeeeCCc-cceEEEEEcCCCCEEEEEcCCCcEEEEECCCC-------cEEEEEEecCce-----EEEE
Q psy6984         175 VKVWNLTNCKLKINHSGHT-GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG-------KHLHTLVHNDII-----TALC  241 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~i-----~~~~  241 (380)
                      +.++|..+.+++..++-.. ..|..+.++-.|+.|+.-+.|+.|+.|++..-       ++.-..+..+.|     ..++
T Consensus       177 llv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc  256 (405)
T KOG1273|consen  177 LLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC  256 (405)
T ss_pred             EEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence            9999999988776665444 67888999999999999999999999987521       111011112223     4667


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc-cceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF-RDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                      |+.++.|....     +.....+++|....|.++.-+.+.. ....++.|+|-...+++- ..|.|++|...
T Consensus       257 fs~dgeYv~a~-----s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  257 FSGDGEYVCAG-----SARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             ecCCccEEEec-----cccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            77777664332     2456789999999999988888776 567789999999988887 67999999754

>KOG0307|consensus

Probab=99.91  E-value=2.1e-23  Score=192.49  Aligned_cols=292  Identities=21%  Similarity=0.294  Sum_probs=207.3

Q ss_pred             EEEEeCCCCCCeEEEe----------eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCE----EEEEeCC
Q psy6984          20 TQIATNPKFPDTILSC----------SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNY----ALSGSWD   85 (380)
Q Consensus        20 ~~i~~~~~~~~~l~t~----------~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d   85 (380)
                      ..++|+|....++++|          +.+.++.+|.++..+....+.......-....+.++|.+.|..    |+.|..|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence            3467887754455554          3466777887764433322222111223445789999987766    8889999


Q ss_pred             CcEEEEECCC---C---ceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEe-eCCCcCcEEEEEE
Q psy6984          86 KTLRLWDLAA---G---KTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSDWVSCVRF  157 (380)
Q Consensus        86 ~~i~vwd~~~---~---~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~  157 (380)
                      |.|-+||...   +   ..+..+..|.+.|..+.|++... .+|+|+.||.|.|||+.+-...... .....+.|.|++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            9999999865   2   23456678999999999999766 8999999999999998653222111 2234567999999


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCcc--ceEEEEEcCCCC-EEEEEcCC---CcEEEEECCCCcEEEEE
Q psy6984         158 SPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTG--YLNTVTVSPDGS-LCASGGKD---MNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~~~~d---~~i~i~d~~~~~~~~~~  231 (380)
                      +..-+ .+|++++.+|.+.+||++..+.+..+..+..  .+..++|+|+.- .+++++.|   -.|.+||++....    
T Consensus       170 Nrkvq-hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass----  244 (1049)
T KOG0307|consen  170 NRKVS-HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS----  244 (1049)
T ss_pred             chhhh-HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC----
Confidence            87544 4789999999999999999877776665543  477899999764 46666655   3678888764321    


Q ss_pred             EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEEEe
Q psy6984         232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWN  310 (380)
Q Consensus       232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~  310 (380)
                                  |                              ...+..|...|.++.|++.+ .+|+|++.|+.|.+|+
T Consensus       245 ------------P------------------------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN  282 (1049)
T KOG0307|consen  245 ------------P------------------------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN  282 (1049)
T ss_pred             ------------c------------------------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence                        1                              11123556678899999866 8899999999999998


Q ss_pred             cccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC-EEEEEeeCCeEEEEEeeeecc
Q psy6984         311 TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ-TLFAGYSDNTIRVWQVSVTSR  378 (380)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~g~~dg~v~iw~~~~~~~  378 (380)
                      ..++.           .+.++         .....+|+.+.|+|... .+++++-||.|.||.+.-++.
T Consensus       283 ~~tgE-----------vl~~~---------p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  283 PNTGE-----------VLGEL---------PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             CCCce-----------Eeeec---------CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence            64432           33222         22456899999999877 667788999999999876553

>KOG1007|consensus

Probab=99.90  E-value=4.1e-22  Score=157.43  Aligned_cols=279  Identities=22%  Similarity=0.304  Sum_probs=195.1

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCC-------CeEEEeecCCCCCCcc-cc---ccccc-CCCcceEEEEEccCCCE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRD-------NTLIIWKLTRDDTNYG-VP---QKRLK-GHSHFISDIVLSSDGNY   78 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~d-------g~v~vw~~~~~~~~~~-~~---~~~~~-~h~~~v~~~~~~~~~~~   78 (380)
                      .|.-|-|.|..|+-+|..+..|+|+-.+       -.+-+|.++.+..... .+   ...+. .+...|.|+.|.|++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            4556779999999999877788887652       2467999875432211 11   11222 44558999999999999


Q ss_pred             EEEEeCCCcEEEEECCCCce-eeee-----cccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC
Q psy6984          79 ALSGSWDKTLRLWDLAAGKT-TRRF-----EDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD  150 (380)
Q Consensus        79 l~s~~~d~~i~vwd~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  150 (380)
                      +++-. |..|.+|++..+.. ...+     ..+....++-+|+|  |+..+++. .|+++..||+++..+...++.+|..
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcc
Confidence            98877 78999999987655 3322     13455678889988  66666554 6789999999988877788889999


Q ss_pred             cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      .|..+.|+|+.+ .+|++|+.||.|++||.++.+ .+..+.+|...++++.|+| ..+++++|+.|..+.+|...+-...
T Consensus       216 ~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE  294 (370)
T KOG1007|consen  216 RVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE  294 (370)
T ss_pred             eeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence            999999999865 489999999999999998754 4567889999999999999 5678999999999999976443221


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE-EEEeeCCCcEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ-IVSSSRDKTIK  307 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~  307 (380)
                      ..+........   .++..              ..-..-++..+. ...+..|...|++++||.-..+ ||+-++||.|.
T Consensus       295 ~qi~~~~dese---~e~~d--------------seer~kpL~dg~-l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  295 QQIEFEDDESE---SEDED--------------SEERVKPLQDGQ-LETYDEHEDSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             ccccccccccc---Ccchh--------------hHHhcccccccc-cccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence            11111110000   00000              000000111111 1234467788999999987775 77889999987


Q ss_pred             EEe
Q psy6984         308 LWN  310 (380)
Q Consensus       308 iw~  310 (380)
                      |=+
T Consensus       357 Is~  359 (370)
T KOG1007|consen  357 ISS  359 (370)
T ss_pred             eec
Confidence            754

>KOG1034|consensus

Probab=99.90  E-value=7.1e-22  Score=158.71  Aligned_cols=306  Identities=19%  Similarity=0.321  Sum_probs=210.0

Q ss_pred             cCcccceEEEEeCC----CCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCC----CEEEEEeC
Q psy6984          13 NGHNGWVTQIATNP----KFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG----NYALSGSW   84 (380)
Q Consensus        13 ~~h~~~v~~i~~~~----~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~   84 (380)
                      .+|+..|..++|++    +.+..++|.+. +.+.++++..+.....++...-..|......++|+-|.    -++|.|+.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            47889999999884    23456777776 48899998765422222222223467777888887543    37899999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEee--CCCcCcEEEEEEccCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPNH  161 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~  161 (380)
                      -|.|+|.|+.+++....+.+|..+|..+.|.|+. ++++++|.|-.|++|++.+......+.  .+|.+.|-++.|++++
T Consensus       114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g  193 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG  193 (385)
T ss_pred             eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence            9999999999999999999999999999999965 688899999999999998876665543  5899999999999987


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeE----------------------------eeeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKI----------------------------NHSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      .  .++++|.|.++++|++...+...                            ...-|...|.|+.|-  |.++++-+-
T Consensus       194 d--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc  269 (385)
T KOG1034|consen  194 D--RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC  269 (385)
T ss_pred             C--eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence            6  79999999999999997321100                            011244444444443  468888888


Q ss_pred             CCcEEEEEC-CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEE--EE
Q psy6984         214 DMNAMLWDL-NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV--AF  290 (380)
Q Consensus       214 d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~  290 (380)
                      ++.|..|.. .-++.++....++....+               ..        -+++           ...+++-+  +|
T Consensus       270 enaI~~w~pgkl~e~~~~vkp~es~~Ti---------------~~--------~~~~-----------~~c~iWfirf~~  315 (385)
T KOG1034|consen  270 ENAIVCWKPGKLEESIHNVKPPESATTI---------------LG--------EFDY-----------PMCDIWFIRFAF  315 (385)
T ss_pred             CceEEEEecchhhhhhhccCCCccceee---------------ee--------Eecc-----------CccceEEEEEee
Confidence            889999976 222222222111110000               00        0111           11234444  55


Q ss_pred             eecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEE
Q psy6984         291 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRV  370 (380)
Q Consensus       291 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~i  370 (380)
                      .|-++.||.|...|.|++||+.....      .+..   .+.       .......|...+||.||.+|+..+.|++|-=
T Consensus       316 d~~~~~la~gnq~g~v~vwdL~~~ep------~~~t---tl~-------~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr  379 (385)
T KOG1034|consen  316 DPWQKMLALGNQSGKVYVWDLDNNEP------PKCT---TLT-------HSKSGSTVRQTSFSRDGSILVLVCDDGTVWR  379 (385)
T ss_pred             cHHHHHHhhccCCCcEEEEECCCCCC------ccCc---eEE-------eccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence            67789999999999999999754321      1110   010       0112335678899999999999999999877


Q ss_pred             EEe
Q psy6984         371 WQV  373 (380)
Q Consensus       371 w~~  373 (380)
                      ||.
T Consensus       380 wdr  382 (385)
T KOG1034|consen  380 WDR  382 (385)
T ss_pred             EEe
Confidence            764

>KOG1538|consensus

Probab=99.90  E-value=5.6e-22  Score=173.28  Aligned_cols=279  Identities=18%  Similarity=0.317  Sum_probs=200.6

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~  145 (380)
                      .|+.++|.|||..|+.+..+ .+.+||.+.|..++.+++|+..|.|++|+.||+.+|+|+.|+.|.+|...-.   ..+.
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee
Confidence            68999999999998877654 7999999999999999999999999999999999999999999999974332   2334


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  225 (380)
                      -+|.+.|.|+.|+|-..  .|++++-. ..-+|........ .+ .....+.+++|..||.+++.|-.+|+|.+=+-...
T Consensus        90 YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE  164 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE  164 (1081)
T ss_pred             eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence            57999999999999754  57777644 3456766543221 11 12457899999999999999999999998765433


Q ss_pred             cEEEEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         226 KHLHTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       226 ~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      +.+..-.   .+++|-+++|+|......... ++..-....+..|.+. |++...-....-+..|+.+.|+|.+++.|+.
T Consensus       165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di-~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGs  242 (1081)
T KOG1538|consen  165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDI-LAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGS  242 (1081)
T ss_pred             cceEEeCCCCCCCCceEEEecCCCCCCccce-EEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccC
Confidence            3333222   467899999999753211110 1111122333344443 4443333333345668999999999999999


Q ss_pred             CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       303 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      |+.+++|.-..            -.+.+.         .....++++++..|+++.++.|+.||+|..|++-.+
T Consensus       243 dk~L~~fTR~G------------vrLGTv---------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  243 DKQLSLFTRDG------------VRLGTV---------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             CCceEEEeecC------------eEEeec---------cccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            99999985211            111111         113457889999999999999999999999987543

>KOG1009|consensus

Probab=99.89  E-value=1.1e-20  Score=155.90  Aligned_cols=176  Identities=22%  Similarity=0.354  Sum_probs=139.1

Q ss_pred             CcceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcc----cccccccCCCcceEEEEEccCC
Q psy6984           1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG----VPQKRLKGHSHFISDIVLSSDG   76 (380)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~   76 (380)
                      |.....|+...   -..+|.++.+.+...+.++||+.|..|++|.+........    .-...+..|...|+++.|+|+|
T Consensus         1 m~~~~~ei~wH---~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g   77 (434)
T KOG1009|consen    1 MEAYPIEISWH---DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG   77 (434)
T ss_pred             CCceeeEEEec---CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc
Confidence            45566666664   2357899999987555999999999999999875432211    1234678999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECC--------C--------CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce
Q psy6984          77 NYALSGSWDKTLRLWDLA--------A--------GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  140 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~  140 (380)
                      +.|++|+.+|.|.+|-..        +        -...+.+.+|...|..++|+|++.++++++-|+.+++||+..+..
T Consensus        78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l  157 (434)
T KOG1009|consen   78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL  157 (434)
T ss_pred             CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence            999999999999999765        2        123455678999999999999999999999999999999887766


Q ss_pred             EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC
Q psy6984         141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~  182 (380)
                      ... ...|...+..++|.|-.+  ++++-+.|...+.+.+..
T Consensus       158 ~~~-~~dh~~yvqgvawDpl~q--yv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  158 LAI-LDDHEHYVQGVAWDPLNQ--YVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             Eee-ccccccccceeecchhhh--hhhhhccCcccceeeeee
Confidence            544 457888899999998755  577777787666666543

>KOG0302|consensus

Probab=99.89  E-value=2.3e-21  Score=158.43  Aligned_cols=261  Identities=20%  Similarity=0.292  Sum_probs=176.4

Q ss_pred             ccCCCcceEEEEEccCC--CEEEEEeCCCcEEEEECCC----------------CceeeeecccCCCeEEEEEeCCC-CE
Q psy6984          60 LKGHSHFISDIVLSSDG--NYALSGSWDKTLRLWDLAA----------------GKTTRRFEDHTKDVLSVAFSVDN-RQ  120 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~----------------~~~~~~~~~h~~~v~~~~~~~~~-~~  120 (380)
                      ...|.+.++.+..++-+  .+.++-+..|.|.||++..                .+++.++.+|...=..++|||-- ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            45677888888877654  4566667789999999853                24566778899889999999932 24


Q ss_pred             EEEEeCCCcEEEEeCCCcceEE--EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce--eeEeeeCCccce
Q psy6984         121 IVSSSRDKTIKLWNTLAHCKFT--IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYL  196 (380)
Q Consensus       121 ~~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i  196 (380)
                      +++|..-+.|++|...++.-..  .-..+|+..|..++|+|... .+|++|+.|++|+|||++...  .....+.|.+.|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV  305 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV  305 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence            7788888899999865432111  11236899999999999865 489999999999999999862  233457899999


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee
Q psy6984         197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET  276 (380)
Q Consensus       197 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (380)
                      +.++|+.+-.+||+|+.||.+.|||++..+.-      .                                      .+.
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------~--------------------------------------pVA  341 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSG------Q--------------------------------------PVA  341 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCC------C--------------------------------------cce
Confidence            99999998889999999999999999754311      0                                      111


Q ss_pred             eeeccccceeEEEEeecC-CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecC
Q psy6984         277 PFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD  355 (380)
Q Consensus       277 ~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  355 (380)
                      .+..|..+|+++.|+|.. ..|++++.|.+|.+||+.......-.+.+....+..+++.....  .-.+..+..|.|+++
T Consensus       342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV--HqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV--HQGQKEVKEVHWHRQ  419 (440)
T ss_pred             eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE--ecchhHhhhheeccC
Confidence            222344567777777754 56788889999999997432210000000000011122211100  001334567899998


Q ss_pred             C-CEEEEEeeCCe
Q psy6984         356 G-QTLFAGYSDNT  367 (380)
Q Consensus       356 g-~~l~~g~~dg~  367 (380)
                      - -+|++.+.||.
T Consensus       420 iPG~lvsTa~dGf  432 (440)
T KOG0302|consen  420 IPGLLVSTAIDGF  432 (440)
T ss_pred             CCCeEEEecccce
Confidence            4 46677778884

>KOG4378|consensus

Probab=99.89  E-value=1.7e-21  Score=164.68  Aligned_cols=267  Identities=20%  Similarity=0.218  Sum_probs=206.0

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK   97 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   97 (380)
                      .+.++.|+...--..++.+.|..+++|.....  .-.+|.....+-. .-.|+.......|+++|+..+.|+|||++...
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd-~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKLTGD-NAFCVACASQSLYEISGGQSGCVKIWDLRAKL  112 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCC--CCccceeeccccc-hHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence            48899998753112344567889999976543  1122222222111 33455555566899999999999999999777


Q ss_pred             eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984          98 TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV  177 (380)
Q Consensus        98 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~i  177 (380)
                      ..+.+.+|...|+++.+.-...++|+++..|-|.|..+.++.+...+..+..+.|+-+.|+|..+ .+|.+++.+|.|.+
T Consensus       113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~Vtl  191 (673)
T KOG4378|consen  113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTL  191 (673)
T ss_pred             HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEE
Confidence            77888999999999999999999999999999999988776665555555566788999999755 47788999999999


Q ss_pred             EeCCCceeeEe-eeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeee
Q psy6984         178 WNLTNCKLKIN-HSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDI  255 (380)
Q Consensus       178 wd~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  255 (380)
                      ||......... ...|..+...++|+|.. .+|++-+.|..|.+||.+..+....+....+...++|++++-+..++   
T Consensus       192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG---  268 (673)
T KOG4378|consen  192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG---  268 (673)
T ss_pred             EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEee---
Confidence            99987665543 34688899999999955 57889999999999999988888888999999999999998765443   


Q ss_pred             eeeccccceEEEEcCCcee-eeeeeccccceeEEEEeecC
Q psy6984         256 SRTLQKSNLILYPINHGKM-ETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~  294 (380)
                         ..++.++.|+++..+. +.....|...|++++|-|..
T Consensus       269 ---~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  269 ---NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ---cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence               3467888999887654 34455666779999997764

>KOG0303|consensus

Probab=99.89  E-value=1.1e-21  Score=161.24  Aligned_cols=234  Identities=19%  Similarity=0.304  Sum_probs=174.6

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--ccccccccCCCcceEEEEEccC-CCEEEEEeCCCc
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQKRLKGHSHFISDIVLSSD-GNYALSGSWDKT   87 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~   87 (380)
                      .+.||.+.|..++|+|.++..||+||.|.+|.||++..+....  ..+...+.||...|--+.|+|. .+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3579999999999999988899999999999999987654332  2345678999999999999995 578999999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc-EEEEEEccCCCCCEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-VSCVRFSPNHQNPII  166 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l  166 (380)
                      |.+||+.+++.+..+. |..-|.++.|+.||.++++++.|+.|+|||.+++...... .+|... -.-+.|..++.  ++
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~--i~  231 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGK--IF  231 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCc--ee
Confidence            9999999999888877 9999999999999999999999999999998877655443 355432 22344444432  33


Q ss_pred             EEE---eCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCcE-E---EEEEecCc
Q psy6984         167 VSA---GWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKH-L---HTLVHNDI  236 (380)
Q Consensus       167 ~s~---~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~-~---~~~~~~~~  236 (380)
                      .||   .+++++-+||..+.+....+  ......|.=--++|+...+ ++|-.|+.|+.|.+....+ +   .++...++
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ep  311 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEP  311 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCc
Confidence            333   34788999998764432211  1223345445578887765 4566799999999876653 2   23345667


Q ss_pred             eEEEEeecCccc
Q psy6984         237 ITALCFSPNRSF  248 (380)
Q Consensus       237 i~~~~~~~~~~~  248 (380)
                      .+.+.+-|.+-.
T Consensus       312 QRG~g~mPKRGl  323 (472)
T KOG0303|consen  312 QRGMGFMPKRGL  323 (472)
T ss_pred             cccccccccccc
Confidence            777777776543

>KOG0642|consensus

Probab=99.88  E-value=1.8e-21  Score=167.00  Aligned_cols=223  Identities=24%  Similarity=0.418  Sum_probs=178.8

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC---CCcccccccccCCCcceEEEEEccCCCEE
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD---TNYGVPQKRLKGHSHFISDIVLSSDGNYA   79 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l   79 (380)
                      .+++++..++.-|...|..+.++|. ...|++|+.||++++|++....   ...-.+...+.+|..+|.|+++++++.++
T Consensus       281 ~k~w~ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~  359 (577)
T KOG0642|consen  281 TKKWNIKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHC  359 (577)
T ss_pred             heecceeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEE
Confidence            4568888899999999999999997 4689999999999999994321   11123566889999999999999999999


Q ss_pred             EEEeCCCcEEEEECCCC----------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE-------
Q psy6984          80 LSGSWDKTLRLWDLAAG----------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT-------  142 (380)
Q Consensus        80 ~s~~~d~~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~-------  142 (380)
                      ++|+-||+|+.|++..+          .....+.+|.+.|..+++++....|++++.||+++.|+........       
T Consensus       360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~  439 (577)
T KOG0642|consen  360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH  439 (577)
T ss_pred             EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcccc
Confidence            99999999999966421          2345678999999999999999999999999999999743221100       


Q ss_pred             -------------------------------------EeeC------CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         143 -------------------------------------IVED------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       143 -------------------------------------~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                                                           +...      .....+.-+..+|+.  .+.+++..|+.|+++|
T Consensus       440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~--~~~~~~hed~~Ir~~d  517 (577)
T KOG0642|consen  440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA--DITFTAHEDRSIRFFD  517 (577)
T ss_pred             CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC--CeeEecccCCceeccc
Confidence                                                 0000      001224445566654  5788999999999999


Q ss_pred             CCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      ..++++......|...++++++.|+|.+|++++.|+.+++|.+.....+
T Consensus       518 n~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  518 NKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             ccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            9999998888889999999999999999999999999999988665443

>KOG2919|consensus

Probab=99.88  E-value=3.3e-20  Score=148.95  Aligned_cols=281  Identities=19%  Similarity=0.290  Sum_probs=194.2

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcc----cc---ccccc-CCCcceEEEEEc-------cCCCEEEEEe
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG----VP---QKRLK-GHSHFISDIVLS-------SDGNYALSGS   83 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~----~~---~~~~~-~h~~~v~~~~~~-------~~~~~l~s~~   83 (380)
                      .....|+|+ +..|++-+.|..+.+|+++.+.....    ..   ...++ .....|...+|-       |+.+++++.+
T Consensus        52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            345679998 78999999999999999975432211    10   00111 112345665553       7788999999


Q ss_pred             CCCcEEEEECCCCceeeeecc--cCCC---eEEEEEeCCCCEEEEEeCCCcEEEEeC-CCcceEE------EeeCCCcCc
Q psy6984          84 WDKTLRLWDLAAGKTTRRFED--HTKD---VLSVAFSVDNRQIVSSSRDKTIKLWNT-LAHCKFT------IVEDGHSDW  151 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~~~s~~~d~~v~iwd~-~~~~~~~------~~~~~~~~~  151 (380)
                      .|.-|++||.-+|+....+..  |..+   ..++.|+|||..|++|.. +.|++||+ +.++...      .-..+....
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            999999999999998887753  4333   468999999999987754 68999997 3332211      112344667


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC-CCcEEEEECCCCcE-EE
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK-DMNAMLWDLNDGKH-LH  229 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~-~~  229 (380)
                      +.|++|+|... ..++.++....+-|+.-....+.....+|.+.|+.+.|.++|+.|.+|+. |-.|..||++.... +.
T Consensus       210 isc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  210 ISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            89999999754 37888998889888888887877778899999999999999999999875 78999999975431 11


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                      .+.                        +...+-+.++                    -....|++++|++|+.||.|++|
T Consensus       289 ~L~------------------------rhv~~TNQRI--------------------~FDld~~~~~LasG~tdG~V~vw  324 (406)
T KOG2919|consen  289 ALE------------------------RHVGDTNQRI--------------------LFDLDPKGEILASGDTDGSVRVW  324 (406)
T ss_pred             hhh------------------------hhccCccceE--------------------EEecCCCCceeeccCCCccEEEE
Confidence            110                        0001011111                    12345789999999999999999


Q ss_pred             ecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC
Q psy6984         310 NTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD  365 (380)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d  365 (380)
                      |+.+...-                   ......+...|..++++|--.++|+.+..
T Consensus       325 dlk~~gn~-------------------~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  325 DLKDLGNE-------------------VSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ecCCCCCc-------------------ccccccccccccceecCcccceeeeccCc
Confidence            87542110                   00122344556778888887777765543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=9.9e-18  Score=152.15  Aligned_cols=334  Identities=34%  Similarity=0.548  Sum_probs=235.2

Q ss_pred             EeEEecCcc-cceEEEEe-CCCCCCeEEEeeC-CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           8 LRGTLNGHN-GWVTQIAT-NPKFPDTILSCSR-DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         8 ~~~~~~~h~-~~v~~i~~-~~~~~~~l~t~~~-dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      ....+.++. ..+..+.. .+.....++..+. |+.+++|++...    ......+..|...|..+.|+|++.++++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  175 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP----GKLIRTLEGHSESVTSLAFSPDGKLLASGSS  175 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC----CeEEEEEecCcccEEEEEECCCCCEEEecCC
Confidence            344555544 36777777 6653325555455 999999998641    1123456789999999999999999999886


Q ss_pred             -CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          85 -DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        85 -d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                       |+.+++|++..++....+..|...+.+++|+|++. .+++++.|+.+++||.............|.... ...|+|++ 
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-  253 (466)
T COG2319         176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-  253 (466)
T ss_pred             CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-
Confidence             99999999998888888888999999999999998 555559999999998764444432345666654 33788876 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCcee-eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE---ecCceE
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKL-KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV---HNDIIT  238 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~i~  238 (380)
                       .++++++.|+.+++|++..... .....+|...+.++.++|++..+++++.|+.+.+||...........   +...+.
T Consensus       254 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (466)
T COG2319         254 -SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS  332 (466)
T ss_pred             -CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceE
Confidence             4677999999999999986553 33336788899999999988888889999889999998877655543   455578


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE-eeCCCcEEEEecccceee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~v~iw~~~~~~~~  317 (380)
                      .+.+ +.. .....  ... ..+..+.+|...... ..........+..+.+++ ...++. +..++.+.+|+.......
T Consensus       333 ~~~~-~~~-~~~~~--~~~-~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  405 (466)
T COG2319         333 SLSF-SPD-GSLLV--SGG-SDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL  405 (466)
T ss_pred             EEEE-CCC-CCEEE--Eee-cCCCcEEeeecCCCc-eeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence            8887 422 01111  111 223556667776655 222222222277888888 544444 688999999986543322


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      .......                    ..+....+++++..+++++.++.+++|++..
T Consensus       406 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         406 RNLDGHT--------------------SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             eeccCCC--------------------CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            2111000                    3466788999999999999999999998754

>KOG4227|consensus

Probab=99.87  E-value=2.3e-20  Score=153.61  Aligned_cols=318  Identities=13%  Similarity=0.164  Sum_probs=210.7

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccccc--CCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK--GHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      .+.+|.|.|+.|.|+.+ +..|++|++|..+++|+++..-......+..+.  .|...|.|++|....+.+++|+.+++|
T Consensus        51 D~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            46799999999999987 789999999999999998642111111112233  345679999999999999999999999


Q ss_pred             EEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-eEE-EeeCCCcCcEEEEEEccCCCCC
Q psy6984          89 RLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-KFT-IVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      .+.|+.+.+.+-.+.  ...+.|..+..+|..+.+++.+.++.|.+||.+... ... ............+.|+|.... 
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~-  208 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA-  208 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce-
Confidence            999999988776654  234689999999999999999999999999976533 111 112223345778999997553 


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEee-------eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-EEEEecCc
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINH-------SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL-HTLVHNDI  236 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~  236 (380)
                      +|++.+..+-+.+||.+........       +.....-.++.|+|+|..|++--....-.+||+.+.+.. ..+.|+  
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N--  286 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN--  286 (609)
T ss_pred             eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC--
Confidence            6778888889999999875432111       111222356789999999988877777778887653321 111111  


Q ss_pred             eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccccee
Q psy6984         237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  316 (380)
Q Consensus       237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  316 (380)
                             |++-+..                                ..+-+++|--| ..+++|+.+-.|++|.+-....
T Consensus       287 -------~~GY~N~--------------------------------~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~d  326 (609)
T KOG4227|consen  287 -------PNGYCNI--------------------------------KTIKSMTFIDD-YTVATGSDHWGIHIWKLPRAND  326 (609)
T ss_pred             -------CCcceee--------------------------------eeeeeeeeecc-eeeeccCcccceEEEecCCCcc
Confidence                   1111000                                11235566533 4589999999999998743322


Q ss_pred             eeE---eecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         317 FTI---VDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       317 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ..-   +......|-.++-.+-.....+.|...+..+.|+|...+|++.+-...++||.
T Consensus       327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             ccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence            111   11101111000000000011234555667899999999999988899999995

>KOG0321|consensus

Probab=99.87  E-value=1.9e-20  Score=162.87  Aligned_cols=251  Identities=18%  Similarity=0.295  Sum_probs=171.7

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeCCCcEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSWDKTLR   89 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~   89 (380)
                      ....|.+.|.++.|-|. ..+|++++.|.++++||+......   ....+.||...|.+++|.|+ ...|++|+.||.|.
T Consensus        95 ~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~l~---G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il  170 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSRLV---GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL  170 (720)
T ss_pred             ccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccceee---cceeecccccccchhhhccCCCcceeeccCCCcEE
Confidence            34579999999999995 689999999999999998754322   12246799999999999985 56789999999999


Q ss_pred             EEECCCCc---------------------------eeeeecccCCCeEE---EEEeCCCCEEEEEeC-CCcEEEEeCCCc
Q psy6984          90 LWDLAAGK---------------------------TTRRFEDHTKDVLS---VAFSVDNRQIVSSSR-DKTIKLWNTLAH  138 (380)
Q Consensus        90 vwd~~~~~---------------------------~~~~~~~h~~~v~~---~~~~~~~~~~~s~~~-d~~v~iwd~~~~  138 (380)
                      |||++-..                           .+.....+...|.+   +-+..|...||+++. |+.|++||+++.
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            99985321                           01112234445555   566688889998887 999999998764


Q ss_pred             ceEEEee-------CCC---cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee--eEeeeCCcc--ceEEEEEcCC
Q psy6984         139 CKFTIVE-------DGH---SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL--KINHSGHTG--YLNTVTVSPD  204 (380)
Q Consensus       139 ~~~~~~~-------~~~---~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~--~i~~~~~~~~  204 (380)
                      ......+       ..|   .-.+.++.....+  .+|++.+.|+.|..|++.....  ...+.++..  .-..-..+|+
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG--t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG--TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCC--CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            3322111       111   1234455554433  4566666699999999986432  223333321  1222346899


Q ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccc
Q psy6984         205 GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD  284 (380)
Q Consensus       205 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (380)
                      +.++++|+.|...++|.+.+.+.-                                              ...+.+|..+
T Consensus       329 ~~~l~SgSsd~~ayiw~vs~~e~~----------------------------------------------~~~l~Ght~e  362 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVSSPEAP----------------------------------------------PALLLGHTRE  362 (720)
T ss_pred             CceEeccCCCcceeeeeecCccCC----------------------------------------------hhhhhCcceE
Confidence            999999999999999988654311                                              0112244456


Q ss_pred             eeEEEEeecC-CEEEEeeCCCcEEEEeccc
Q psy6984         285 VLSVAFSVDN-RQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       285 v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~  313 (380)
                      |++++|.|.. .-+++|++|-.+++|++..
T Consensus       363 Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  363 VTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             EEEEeeccccCCCceeeccCcceEEEeccC
Confidence            7788887643 2367779999999999754

>KOG1188|consensus

Probab=99.87  E-value=1.3e-20  Score=152.30  Aligned_cols=273  Identities=16%  Similarity=0.276  Sum_probs=184.5

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCCCcEEEEECCCCce--eeeeccc
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWDKTLRLWDLAAGKT--TRRFEDH  105 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~h  105 (380)
                      ..+|++-..|+|++||.....     ....++++...++.+.|..  ....+.+++.||.|++||++....  ...+..+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-----~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~  115 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-----LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ  115 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-----hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence            468888889999999976532     2345678888888888876  567899999999999999987544  3344555


Q ss_pred             C-CCeEEEEEeCCCCEEEEEe----CCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         106 T-KDVLSVAFSVDNRQIVSSS----RDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       106 ~-~~v~~~~~~~~~~~~~s~~----~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                      . .+..+++....+..++.|.    .+-.|.+||.+.... +....+.|.+.|++++|+|...+ +|+||+.||.|.+||
T Consensus       116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn-lLlSGSvDGLvnlfD  194 (376)
T KOG1188|consen  116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN-LLLSGSVDGLVNLFD  194 (376)
T ss_pred             CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC-eEEeecccceEEeee
Confidence            5 4667787776777888775    467899999887655 66677899999999999998664 899999999999999


Q ss_pred             CCCcee---eEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCc--------------eEEEE
Q psy6984         180 LTNCKL---KINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDI--------------ITALC  241 (380)
Q Consensus       180 ~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------------i~~~~  241 (380)
                      ++....   ....-.|...|.++.|..++ +.+.+-+......+|+++.+.....+..+..              |... 
T Consensus       195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~-  273 (376)
T KOG1188|consen  195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH-  273 (376)
T ss_pred             cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc-
Confidence            976421   11122356679999998877 4577888999999999988874433321110              0000 


Q ss_pred             eecCcccceeeeeeeee-ccccceEEEE-cCCc---eeeeeeeccc-cceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         242 FSPNRSFQKIKLDISRT-LQKSNLILYP-INHG---KMETPFFSLF-RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~---~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                       +|... .  ...+..+ ..+..+.... ...+   +....+.+++ .-|.++.|...+..+.||++||.+++|....
T Consensus       274 -~~~~~-~--~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  274 -SPGDK-D--TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             -cCCCc-c--eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence             01100 0  0011111 1122222211 1122   2223333423 3466788888889999999999999997533

>KOG0270|consensus

Probab=99.87  E-value=8.8e-21  Score=158.18  Aligned_cols=211  Identities=22%  Similarity=0.344  Sum_probs=163.1

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTL   88 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i   88 (380)
                      ....||+..|.+++|+....+.||+||.|.+|++||+...+     +...+.-|...|.++.|+| ....|++|+.|++|
T Consensus       237 ~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V  311 (463)
T KOG0270|consen  237 NSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTV  311 (463)
T ss_pred             cccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-----cceehhhcCCceeEEEecCCCceEEEeccccceE
Confidence            34568999999999999888899999999999999998654     3344567888999999997 57899999999999


Q ss_pred             EEEECCCC-ceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          89 RLWDLAAG-KTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        89 ~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      .+.|.+.. ..-..+ ...+.|-.++|.|... .++++..||+|+-+|++...........|.+.|.++.+++... .++
T Consensus       312 ~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p-~~l  389 (463)
T KOG0270|consen  312 ALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP-GLL  389 (463)
T ss_pred             EeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC-cce
Confidence            99999842 222222 2356788899988655 5778889999999999876555566678999999999998654 478


Q ss_pred             EEEeCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcE
Q psy6984         167 VSAGWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~  227 (380)
                      +|++.|+.|++|++.....  +......-+...|.++.|+-. .++.|+..+.+++||+.+...
T Consensus       390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             eeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            8999999999999865432  221111223466777778655 567788888899999877654

>KOG1007|consensus

Probab=99.86  E-value=2.6e-20  Score=147.35  Aligned_cols=215  Identities=24%  Similarity=0.376  Sum_probs=165.7

Q ss_pred             eeEEeEEec-CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC-CcccccccccCCCcceEEEEEcc--CCCEEE
Q psy6984           5 TLQLRGTLN-GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT-NYGVPQKRLKGHSHFISDIVLSS--DGNYAL   80 (380)
Q Consensus         5 ~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~   80 (380)
                      +++++..|. .|-|.|.|+.|.|+ ++.+++-. |..|.+|++..... ...++.....+|....++-+|+|  ||+.++
T Consensus       111 tlE~v~~Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~  188 (370)
T KOG1007|consen  111 TLECVASLDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA  188 (370)
T ss_pred             hhhHhhcCCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence            466777777 77889999999997 67777655 78999999875433 22222222334666788889998  788888


Q ss_pred             EEeCCCcEEEEECCCCceeeee-cccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          81 SGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                      +.+ |+++..||+++.+....+ ..|...|+++.|+|+-+ +|++++.||.|+|||.+..........+|.-||++++|+
T Consensus       189 tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  189 TTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             EeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec
Confidence            766 789999999986665554 35777899999999877 467899999999999887766666677899999999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCc-----------------------------eeeEeeeCCccceEEEEEcCCCC-EE
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNC-----------------------------KLKINHSGHTGYLNTVTVSPDGS-LC  208 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~-~l  208 (380)
                      |...+ ++++|+.|..|.+|-...-                             .....+..|...|.+++|+.-.. .|
T Consensus       268 ~~hdq-LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF  346 (370)
T KOG1007|consen  268 PEHDQ-LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF  346 (370)
T ss_pred             Cccce-EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence            98765 7889999999999965320                             01123456889999999998666 57


Q ss_pred             EEEcCCCcEEEEECC
Q psy6984         209 ASGGKDMNAMLWDLN  223 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~  223 (380)
                      |+-++||++.|=++.
T Consensus       347 ASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  347 ASLSYDGRVIISSVP  361 (370)
T ss_pred             EEeccCceEEeecCC
Confidence            888999999886553

>KOG1034|consensus

Probab=99.86  E-value=1.7e-20  Score=150.92  Aligned_cols=245  Identities=23%  Similarity=0.344  Sum_probs=178.7

Q ss_pred             cccceEEEEeCCCC---CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCC-CEEEEEeCCCcEEE
Q psy6984          15 HNGWVTQIATNPKF---PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG-NYALSGSWDKTLRL   90 (380)
Q Consensus        15 h~~~v~~i~~~~~~---~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~v   90 (380)
                      |...-..++|.-+.   .-++|.++.-|.|+|-|+....     ....+.+|...|+.+.+.|+. ++++++|.|..|++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl  162 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL  162 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----hccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence            55556666665431   2378888899999999976543     245678999999999999964 78999999999999


Q ss_pred             EECCCCceeeee---cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-------------------------EE
Q psy6984          91 WDLAAGKTTRRF---EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-------------------------FT  142 (380)
Q Consensus        91 wd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-------------------------~~  142 (380)
                      |++++..++..+   ++|.+.|.++.|+++|.++++++.|.++++|++....-                         +.
T Consensus       163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp  242 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP  242 (385)
T ss_pred             EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence            999999988776   67999999999999999999999999999998642110                         00


Q ss_pred             E--eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce--------------eeEeeeCCccceEEE--EEcCC
Q psy6984         143 I--VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK--------------LKINHSGHTGYLNTV--TVSPD  204 (380)
Q Consensus       143 ~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--------------~~~~~~~~~~~i~~~--~~~~~  204 (380)
                      .  ...-|.+.|-|++|.-    .++++-+-++.|..|.....+              ....+.-....|+-+  +|+|-
T Consensus       243 ~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~  318 (385)
T KOG1034|consen  243 DFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW  318 (385)
T ss_pred             cccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence            0  2235677777888764    268888888999999873211              011111223345544  45788


Q ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccc
Q psy6984         205 GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD  284 (380)
Q Consensus       205 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (380)
                      ++.||.|.+.|.+++||++..++...-.       +.-+                                    .....
T Consensus       319 ~~~la~gnq~g~v~vwdL~~~ep~~~tt-------l~~s------------------------------------~~~~t  355 (385)
T KOG1034|consen  319 QKMLALGNQSGKVYVWDLDNNEPPKCTT-------LTHS------------------------------------KSGST  355 (385)
T ss_pred             HHHHhhccCCCcEEEEECCCCCCccCce-------EEec------------------------------------cccce
Confidence            8999999999999999998765421100       0000                                    00123


Q ss_pred             eeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         285 VLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       285 v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      |...+||.|+..|+....|++|--||.
T Consensus       356 VRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  356 VRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            567899999999999999999988873

>KOG1963|consensus

Probab=99.86  E-value=1.3e-18  Score=157.03  Aligned_cols=359  Identities=19%  Similarity=0.244  Sum_probs=230.9

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCC--CeEEEeeCCCeEEEeecCCCCCCc--------------------------
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNY--------------------------   53 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~--~~l~t~~~dg~v~vw~~~~~~~~~--------------------------   53 (380)
                      +..+.++++.|.+|..+++.+.+.|...  .++++++.||.|++||........                          
T Consensus        43 S~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~  122 (792)
T KOG1963|consen   43 STATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYV  122 (792)
T ss_pred             ecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEe
Confidence            4566778889999999999999998765  467899999999999975311000                          


Q ss_pred             -----cc-----------------------------------------------------------cc--------cccc
Q psy6984          54 -----GV-----------------------------------------------------------PQ--------KRLK   61 (380)
Q Consensus        54 -----~~-----------------------------------------------------------~~--------~~~~   61 (380)
                           ..                                                           +.        ..-.
T Consensus       123 s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~  202 (792)
T KOG1963|consen  123 SVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITV  202 (792)
T ss_pred             ecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhh
Confidence                 00                                                           00        0001


Q ss_pred             CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC----CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA----GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      .|...+++.+++|.++++|+|..||.|.+|.--.    ......+.-|..+|.+++|+++|.++++|+.++.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            2344457899999999999999999999996432    123345667889999999999999999999999999999876


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee-----------CCccceEEEEEcCCCC
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS-----------GHTGYLNTVTVSPDGS  206 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~  206 (380)
                      +.+ +.+ ..-...|..+.++|++.  ..+....|..|.+..+.+........           ...+-.+.+.++|.-+
T Consensus       283 ~~k-qfL-PRLgs~I~~i~vS~ds~--~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  283 GKK-QFL-PRLGSPILHIVVSPDSD--LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCc-ccc-cccCCeeEEEEEcCCCC--eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            653 222 23456789999999875  45555668999888775543332221           1244567788999888


Q ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEEe------------cCceEEEEeecCcccceeeeeeeee--cc--ccceEEEEcC
Q psy6984         207 LCASGGKDMNAMLWDLNDGKHLHTLVH------------NDIITALCFSPNRSFQKIKLDISRT--LQ--KSNLILYPIN  270 (380)
Q Consensus       207 ~l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~  270 (380)
                      .++-.+..+.|.+||+-+.+.+..+..            ...+++++.+-.+++..........  ..  ...+..|..+
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            888899999999999988777665531            1124455544444443221111000  01  1233455543


Q ss_pred             Cc----eeeeeee-ccccceeEEEEe-ecCC-EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCC
Q psy6984         271 HG----KMETPFF-SLFRDVLSVAFS-VDNR-QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD  343 (380)
Q Consensus       271 ~~----~~~~~~~-~~~~~v~~~~~s-~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (380)
                      ..    .+.+... +|...+...++. |... .+++++.||.+++|-......+.-.  . .......    ..   .-+
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~--~-s~W~c~~----i~---sy~  508 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK--S-SNWTCKA----IG---SYH  508 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC--c-cceEEee----ee---ccc
Confidence            32    2222222 333334444443 3333 7899999999999976433222110  0 0000000    00   013


Q ss_pred             CCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       344 ~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ...+.+++||-||..|+ .+.|+.|.|||...
T Consensus       509 k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  509 KTPITALCFSQDGSLLA-VSFDDTITIWDYDT  539 (792)
T ss_pred             cCcccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence            44566889999998766 56799999999865

>KOG1524|consensus

Probab=99.86  E-value=5.8e-20  Score=156.93  Aligned_cols=269  Identities=17%  Similarity=0.330  Sum_probs=185.0

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc-ccccccc--cCCCcceEEEEE--ccCCCEEEEEeCCCcE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY-GVPQKRL--KGHSHFISDIVL--SSDGNYALSGSWDKTL   88 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~-~~~~~~~--~~h~~~v~~~~~--~~~~~~l~s~~~d~~i   88 (380)
                      .|..-|.++.|... ...+++++++..++-|++..+.... .++...+  .-|   +-....  -.+.+.|+.++.||.+
T Consensus        12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h---~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH---LGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             ccceeEEeeccccc-ceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc---ccccccCCCCCcceEEEEcCCceE
Confidence            56777888998876 4566666655455555554332111 1111101  011   111111  1234578899999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      .+.+ +.++..+....|.+++.+-.|+|||.-+++++.||.|++|....-.+....  .....|.|++|.|+..+ ++++
T Consensus        88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~--Q~~~~v~c~~W~p~S~~-vl~c  163 (737)
T KOG1524|consen   88 VILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV--QNEESIRCARWAPNSNS-IVFC  163 (737)
T ss_pred             EEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh--hcCceeEEEEECCCCCc-eEEe
Confidence            9987 456777888899999999999999999999999999999974332221111  24567999999998754 6666


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      .+  +.+.+=.+.........+.|.+-|.++.|+|...++++|+.|-+.++||-..........|+.+|++++|.|+..|
T Consensus       164 ~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~  241 (737)
T KOG1524|consen  164 QG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDY  241 (737)
T ss_pred             cC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccce
Confidence            55  4555555555555667788999999999999999999999999999999754333334468889999999998544


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      ..                |..++-+.+.   ...+.|..++|||||..++.|...|.+.+-.+
T Consensus       242 ~v----------------~S~nt~R~~~---p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~  285 (737)
T KOG1524|consen  242 LL----------------WSYNTARFSS---PRVGSIFNLSWSADGTQATCGTSTGQLIVAYA  285 (737)
T ss_pred             ee----------------eeeeeeeecC---CCccceEEEEEcCCCceeeccccCceEEEeee
Confidence            32                2222211111   12357889999999999999999998776443

>KOG4378|consensus

Probab=99.85  E-value=3.5e-20  Score=156.79  Aligned_cols=210  Identities=19%  Similarity=0.314  Sum_probs=173.6

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeeccc-CC
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH-TK  107 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~  107 (380)
                      ..++++|+..+.|++||+...     +....+++|+..|+++.++-...|||+++..|.|.|..+.++.....+..- ..
T Consensus        91 S~y~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq  165 (673)
T KOG4378|consen   91 SLYEISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ  165 (673)
T ss_pred             ceeeeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC
Confidence            468999999999999998632     234557899999999999999999999999999999999998877777544 34


Q ss_pred             CeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee
Q psy6984         108 DVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK  186 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  186 (380)
                      .|+-+.++|..+.++ +++.+|.|.+||+............|..+...|+|+|.. ..+|++.+.|..|.+||.+..+..
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn-e~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN-EALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc-cceEEEecccceEEEeeccccccc
Confidence            566899999887654 789999999999988777666777899999999999974 458899999999999999865543


Q ss_pred             EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-EEEEE-EecCceEEEEeecC
Q psy6984         187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK-HLHTL-VHNDIITALCFSPN  245 (380)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~~~i~~~~~~~~  245 (380)
                      ..+. ...+..+++|.++|.+|+.|...|.|..||++..+ ++... .|...|++++|.|.
T Consensus       245 ~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  245 DRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             ceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence            3322 34578899999999999999999999999998754 44444 57788999999775

>KOG4328|consensus

Probab=99.85  E-value=1.9e-19  Score=150.89  Aligned_cols=224  Identities=19%  Similarity=0.197  Sum_probs=167.1

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      ..++..-..-+..|.+.|++|.|+|.+...+++.|.||+||+=|++..-..  . ...+..-...+..+.|+.+...++.
T Consensus       220 ~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e--~-v~s~~~d~~~fs~~d~~~e~~~vl~  296 (498)
T KOG4328|consen  220 QEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE--E-VLSLDTDNIWFSSLDFSAESRSVLF  296 (498)
T ss_pred             CCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhH--H-HhhcCccceeeeeccccCCCccEEE
Confidence            344455556778999999999999998899999999999999988753211  1 1122223345677888888878888


Q ss_pred             EeCCCcEEEEECCCCce-eeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCC---cceEEEeeCCCcCcEEEEE
Q psy6984          82 GSWDKTLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLA---HCKFTIVEDGHSDWVSCVR  156 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~~v~~~~  156 (380)
                      +..=|.+.+||+++++. ...+.-|...|..++++|.. .++||++.|++++|||++.   ......-...|...|.++.
T Consensus       297 ~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAy  376 (498)
T KOG4328|consen  297 GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAY  376 (498)
T ss_pred             eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeE
Confidence            88778999999988665 66677899999999999954 5789999999999999754   2211233347888999999


Q ss_pred             EccCCCCCEEEEEeCCCeEEEEeCC----CceeeEeeeCCc------cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHT------GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       157 ~~~~~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      |+|.+..  |++.+.|..|++||..    .......+. |.      -......|.|+..++++|..-..|-++|-..++
T Consensus       377 FSPs~gt--l~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  377 FSPSGGT--LLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             EcCCCCc--eEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            9998754  8899999999999983    222111111 21      134557899999999999999999999987766


Q ss_pred             EEEEE
Q psy6984         227 HLHTL  231 (380)
Q Consensus       227 ~~~~~  231 (380)
                      .+..+
T Consensus       454 ~v~el  458 (498)
T KOG4328|consen  454 MVCEL  458 (498)
T ss_pred             Eeeec
Confidence            55443

>KOG2055|consensus

Probab=99.85  E-value=3.3e-19  Score=149.61  Aligned_cols=255  Identities=15%  Similarity=0.197  Sum_probs=183.7

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEEEEeCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ++++.+.=-.-+|.+..+.|+....+++++.-.-...||+......   +.+.+.++. ..+....+++++++|+..+..
T Consensus       248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~---k~~~~~g~e~~~~e~FeVShd~~fia~~G~~  324 (514)
T KOG2055|consen  248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT---KLKPPYGVEEKSMERFEVSHDSNFIAIAGNN  324 (514)
T ss_pred             hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc---cccCCCCcccchhheeEecCCCCeEEEcccC
Confidence            3444444345688889999985458999999899999998654322   233444554 357788899999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      |.|++....+++.+..++. .+.|.+++|+.|++.+++.+.+|.|.+||+.....+......-.-.-++++.++++.  +
T Consensus       325 G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~--y  401 (514)
T KOG2055|consen  325 GHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS--Y  401 (514)
T ss_pred             ceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc--e
Confidence            9999999999888877653 467999999999999999999999999998876554443322122234556566554  8


Q ss_pred             EEEEeCCCeEEEEeCCCc------eeeEeeeCCccceEEEEEcCCCCEEEEEcC--CCcEEEEECCCCcEEEEEEecCce
Q psy6984         166 IVSAGWDRMVKVWNLTNC------KLKINHSGHTGYLNTVTVSPDGSLCASGGK--DMNAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      |++|+..|.|.|||.+++      +++..+..-...|+.+.|+|+.++||.+|.  +..+++--+.+...          
T Consensus       402 lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV----------  471 (514)
T KOG2055|consen  402 LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV----------  471 (514)
T ss_pred             EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee----------
Confidence            999999999999998653      222223333567999999999999887765  44555543332211          


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                          |+                      -|+...++        -..++|++|||.+.+||.|-.+|.|.+|.+
T Consensus       472 ----Fs----------------------NfP~~n~~--------vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  472 ----FS----------------------NFPTSNTK--------VGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             ----ec----------------------cCCCCCCc--------ccceEEEEecCCCceEEeecCCCceeeEee
Confidence                11                      12222221        135889999999999999999999999964

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=9.4e-17  Score=145.73  Aligned_cols=292  Identities=35%  Similarity=0.568  Sum_probs=217.4

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeC-CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-EEEEEe
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSR-DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-YALSGS   83 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~-dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~   83 (380)
                      ......+.+|...|..+.++|. ...+++++. |+.+++|+.....     ....+.+|...|.++.++|++. .+++++
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGK-----PLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCc-----eEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            3566788899999999999998 457888875 9999999986521     2334566999999999999998 555559


Q ss_pred             CCCcEEEEECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCC
Q psy6984          84 WDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .|+.|++||...+.... .+..|.... ...|+|++..+++++.|+.+++|+...... .... ..|...+.++.+.|.+
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~  296 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDG  296 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCC
Confidence            99999999988777777 678888775 448999998899999999999999875543 3333 5778899999999944


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEE-cCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASG-GKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      .  .+++++.|+.+++||+..........  .|...+..+.+.+++..++.+ ..|+.+.+|+...............+.
T Consensus       297 ~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  374 (466)
T COG2319         297 K--LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL  374 (466)
T ss_pred             C--EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEE
Confidence            3  56668888889999998776555544  677778899884343555555 688999999998877333332233366


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                      .+.+.+ . .....    .......+.+|+................+....+++++.++++++.++.+++|+...
T Consensus       375 ~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         375 SVSFSP-D-GRVVS----SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEEECC-C-CCEEE----EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            777766 4 32222    223456677888877665444333326788899999999999999999999998643

>KOG1188|consensus

Probab=99.84  E-value=2e-19  Score=145.46  Aligned_cols=277  Identities=17%  Similarity=0.286  Sum_probs=181.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEee-CCCc-CcE
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVE-DGHS-DWV  152 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~-~~~~-~~v  152 (380)
                      +.+|++...|.|++||..+++.+..++.+...+..++|..  ....+.+++.||+|++||++.......+. ..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5788999999999999999999999999999999999976  45678899999999999987654433222 2333 356


Q ss_pred             EEEEEccCCCCCEEEEE----eCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCC
Q psy6984         153 SCVRFSPNHQNPIIVSA----GWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~----~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~  225 (380)
                      .|++.+.+  ..++++|    ..+-.|.+||++..+.  ......|...|+++.|+| +.++|++|+.||.+.+||+...
T Consensus       121 ~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  121 ICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eEeeccCc--CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            66665433  3355554    2356799999987654  223456899999999999 5679999999999999998654


Q ss_pred             c----EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc------ceeEE-----EE
Q psy6984         226 K----HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR------DVLSV-----AF  290 (380)
Q Consensus       226 ~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~-----~~  290 (380)
                      .    .++.+.+...|..+.|..++- ..+    ..-.....+.+|.++++..+..+....-      ....+     ..
T Consensus       199 ~EeDaL~~viN~~sSI~~igw~~~~y-krI----~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~  273 (376)
T KOG1188|consen  199 NEEDALLHVINHGSSIHLIGWLSKKY-KRI----MCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH  273 (376)
T ss_pred             cchhhHHHhhcccceeeeeeeecCCc-ceE----EEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence            2    233445677788888877641 111    1122345677888887765443322210      00011     12


Q ss_pred             ee-cCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeE
Q psy6984         291 SV-DNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI  368 (380)
Q Consensus       291 s~-~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v  368 (380)
                      +| ++..++.++. -+...++-.        .+..+.......     ......+...|.++.|...+.+++||++||.+
T Consensus       274 ~~~~~~~~~l~g~~~n~~~~~~~--------~~~~s~~~~~~~-----a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l  340 (376)
T KOG1188|consen  274 SPGDKDTCALAGTDSNKGTIFPL--------VDTSSGSLLTEP-----AILQGGHEEIVRDILFDVKNDVLYTGGEDGLL  340 (376)
T ss_pred             cCCCcceEEEeccccCceeEEEe--------eecccccccCcc-----ccccCCcHHHHHHHhhhcccceeeccCCCceE
Confidence            22 3344454444 344444422        222222111100     01122355567788888899999999999999


Q ss_pred             EEEEe
Q psy6984         369 RVWQV  373 (380)
Q Consensus       369 ~iw~~  373 (380)
                      .+|.+
T Consensus       341 ~~Wk~  345 (376)
T KOG1188|consen  341 QAWKV  345 (376)
T ss_pred             EEEec
Confidence            99985

>KOG1009|consensus

Probab=99.83  E-value=1.1e-18  Score=144.36  Aligned_cols=283  Identities=21%  Similarity=0.291  Sum_probs=182.9

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCC------CC-----CCcccccccccCCCcceEEEEEc
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTR------DD-----TNYGVPQKRLKGHSHFISDIVLS   73 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~------~~-----~~~~~~~~~~~~h~~~v~~~~~~   73 (380)
                      .++....|..|...|+.+.|+|+ +++||+|+++|.|.+|....      +.     .+..+..+.+.+|...|..++|+
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws  132 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS  132 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc
Confidence            67788999999999999999998 79999999999999998761      11     11223345678999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984          74 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS  153 (380)
Q Consensus        74 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~  153 (380)
                      |++.++++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|+..+.+............  + ....
T Consensus       133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~--~-~~m~  209 (434)
T KOG1009|consen  133 PDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG--L-DIMP  209 (434)
T ss_pred             CCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeee--e-eEee
Confidence            999999999999999999999999999999999999999999999999999999866666543322211110  0 0011


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC----CC-----cEEEEECCC
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK----DM-----NAMLWDLND  224 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~-----~i~i~d~~~  224 (380)
                      .-.++++          .....|++-=++.         ......++|+|+|.++++.+.    .+     ..++|+-..
T Consensus       210 ~~~~~~~----------e~~s~rLfhDeTl---------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~  270 (434)
T KOG1009|consen  210 AKAFNER----------EGKSTRLFHDETL---------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD  270 (434)
T ss_pred             ecccCCC----------CcceeeeeecCch---------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc
Confidence            1111111          1122333322221         123345678888888876532    12     223343211


Q ss_pred             -CcEEEEE-EecCceEEEEeecC-------cccc-eee---eeeeeeccccceEEEEcCCceeeeeee-ccccceeEEEE
Q psy6984         225 -GKHLHTL-VHNDIITALCFSPN-------RSFQ-KIK---LDISRTLQKSNLILYPINHGKMETPFF-SLFRDVLSVAF  290 (380)
Q Consensus       225 -~~~~~~~-~~~~~i~~~~~~~~-------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  290 (380)
                       .++...+ ....+...+.++|-       .... .+.   -.+-....+..+++|+.++-....... -|+..+++++|
T Consensus       271 l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaw  350 (434)
T KOG1009|consen  271 LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAW  350 (434)
T ss_pred             ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceee
Confidence             1111111 12233344444441       0000 000   001111235678888877654433332 35678999999


Q ss_pred             eecCCEEEEeeCCCcEEEEe
Q psy6984         291 SVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       291 s~~~~~l~s~~~dg~v~iw~  310 (380)
                      ++||.+|+..|.||..-+-.
T Consensus       351 s~dg~~l~vSS~DGyCS~vt  370 (434)
T KOG1009|consen  351 SDDGSVLLVSSTDGFCSLVT  370 (434)
T ss_pred             cCCCcEEEEeccCCceEEEE
Confidence            99999999999999766543

>KOG0290|consensus

Probab=99.83  E-value=8e-19  Score=139.07  Aligned_cols=231  Identities=17%  Similarity=0.283  Sum_probs=168.5

Q ss_pred             cCcccceEEEEeCCCC----CCeEEEeeCCCeEEEeecCCCCCCccc----ccccccCCCcceEEEEEcc-CCCEEEEEe
Q psy6984          13 NGHNGWVTQIATNPKF----PDTILSCSRDNTLIIWKLTRDDTNYGV----PQKRLKGHSHFISDIVLSS-DGNYALSGS   83 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~----~~~l~t~~~dg~v~vw~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~-~~~~l~s~~   83 (380)
                      ..|.-+++.+.|.|+.    +++|||+++  .+|+|.+..++.....    .......+..++++..|+. |-+++.+.+
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            3788899999999863    567887764  8999998754332211    1112234566788888875 778999999


Q ss_pred             CCCcEEEEECCCCce---eeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCc--CcEEEEEE
Q psy6984          84 WDKTLRLWDLAAGKT---TRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHS--DWVSCVRF  157 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~~v~~~~~  157 (380)
                      -|.+..|||+.++..   ...+..|.++|.+++|...+. .||+.+.||.+|+||++.-...+++.+...  .+.-.+++
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            999999999998633   556788999999999998654 688999999999999887555555554333  34445555


Q ss_pred             ccCCCCCEEEEE-eCCCeEEEEeCCCc-eeeEeeeCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCc------EE
Q psy6984         158 SPNHQNPIIVSA-GWDRMVKVWNLTNC-KLKINHSGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGK------HL  228 (380)
Q Consensus       158 ~~~~~~~~l~s~-~~d~~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~------~~  228 (380)
                      ++... .++++- .....|.+.|++.. ..+..+.+|.+.|+.++|.|. ...+.+++.|.+..+||+..--      ++
T Consensus       251 nkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPi  329 (364)
T KOG0290|consen  251 NKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPI  329 (364)
T ss_pred             CcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCch
Confidence            55433 255553 33467899999864 456678899999999999995 5689999999999999986432      22


Q ss_pred             EEEEecCceEEEEeecCc
Q psy6984         229 HTLVHNDIITALCFSPNR  246 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~  246 (380)
                      .....+..|+.+.|++..
T Consensus       330 lay~a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  330 LAYTAGGEVNQIQWSSSQ  347 (364)
T ss_pred             hhhhccceeeeeeecccC
Confidence            223346668888887643

>KOG0644|consensus

Probab=99.83  E-value=1.7e-20  Score=167.79  Aligned_cols=278  Identities=17%  Similarity=0.299  Sum_probs=204.0

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      +++.+|.+.|+|+.|...|.++++|+.|.-++||.+.++.++..+.+|.+.|++++.+.+...++++|.|..|++|.+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe----eeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN----HSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      +..... ..+|+..|++++|+|-      .+.+.||++++||.+-......    ......-+.++.|-..+.-+++++.
T Consensus       264 ~~pvsv-LrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  264 GAPVSV-LRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CchHHH-HhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            544433 4589999999999994      3678899999999982111111    0011244666777778888999999


Q ss_pred             CCcEEEEECCCC--cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEe
Q psy6984         214 DMNAMLWDLNDG--KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFS  291 (380)
Q Consensus       214 d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  291 (380)
                      |+.-..|...--  ......       -+..+.+...  +   .........+.+|+..++.+...+.+|...++.|.++
T Consensus       337 d~ea~n~e~~~l~~~~~~li-------f~t~ssd~~~--~---~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H  404 (1113)
T KOG0644|consen  337 DGEARNHEFEQLAWRSNLLI-------FVTRSSDLSS--I---VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH  404 (1113)
T ss_pred             CcccccchhhHhhhhccceE-------EEeccccccc--c---ceeeeeeeEeeeeecccchhhhhhcccccceeeeeec
Confidence            998888865321  111000       0001111000  0   0011123456678888888777788888999999999


Q ss_pred             ecCC-EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEE
Q psy6984         292 VDNR-QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRV  370 (380)
Q Consensus       292 ~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~i  370 (380)
                      |-+. ...+++.||...|||+..+..+.++...                    ...+.+.+||+||..++..-.-|.+.|
T Consensus       405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~g--------------------h~kl~d~kFSqdgts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--------------------HGKLVDGKFSQDGTSIALSDDHGQLYI  464 (1113)
T ss_pred             CCCcHhhhhccCCCceEeeecccCCcceeeecc--------------------cceeeccccCCCCceEecCCCCCceEE
Confidence            9664 5668999999999998877666555311                    112346679999999887667777777


Q ss_pred             EEee
Q psy6984         371 WQVS  374 (380)
Q Consensus       371 w~~~  374 (380)
                      ...+
T Consensus       465 ~g~g  468 (1113)
T KOG0644|consen  465 LGTG  468 (1113)
T ss_pred             eccC
Confidence            6543

>KOG0307|consensus

Probab=99.82  E-value=7e-20  Score=169.48  Aligned_cols=218  Identities=19%  Similarity=0.309  Sum_probs=178.0

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEe
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGS   83 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~   83 (380)
                      ..+++.++..|+|.|..++|++..++.||+|++||.|.+||+......+...   ...-.+.|.+++|+.. ...|++++
T Consensus       105 ~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s  181 (1049)
T KOG0307|consen  105 SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGS  181 (1049)
T ss_pred             chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccC
Confidence            3456778899999999999999988899999999999999998654443322   2234567999999875 45688999


Q ss_pred             CCCcEEEEECCCCceeeeecccCC--CeEEEEEeCCCC-EEEEEeCCC---cEEEEeCCCcceEEEeeCCCcCcEEEEEE
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTK--DVLSVAFSVDNR-QIVSSSRDK---TIKLWNTLAHCKFTIVEDGHSDWVSCVRF  157 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~-~~~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~  157 (380)
                      .+|.+.|||++..+.+-.+..+.+  .+..++|+|+.. .+++++.|.   .|++||++.......+..+|...|-++.|
T Consensus       182 ~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsW  261 (1049)
T KOG0307|consen  182 PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSW  261 (1049)
T ss_pred             CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeecc
Confidence            999999999999888877776654  367899999764 566666554   78999987655555555789999999999


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc
Q psy6984         158 SPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  226 (380)
                      ++... .+++|++.|+.|.+|+.++++....+......+..+.|.|... .++.++-||.|.|+.+....
T Consensus       262 c~~D~-~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  262 CPQDP-RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCCc-hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            98654 4889999999999999999999888887778899999999766 88889999999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=2.3e-16  Score=138.25  Aligned_cols=282  Identities=12%  Similarity=0.173  Sum_probs=171.2

Q ss_pred             EEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCC-Ccee--eeecccCC
Q psy6984          32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAA-GKTT--RRFEDHTK  107 (380)
Q Consensus        32 l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~-~~~~--~~~~~h~~  107 (380)
                      +++...++.|++|++..... .. ....+. +......+.++|++++|++++ .++.|.+|++.. ++..  ... ...+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~-l~-~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGA-LT-LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCc-ee-eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCC
Confidence            45557789999999853211 11 112222 234467789999999987764 578999999863 3322  211 2334


Q ss_pred             CeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce
Q psy6984         108 DVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK  184 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  184 (380)
                      ....++|+|+++.+++++ .++.+.+|++......  ......+.....+++++|+++. ++++...++.|.+||+.+..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~-l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT-LWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE-EEEeeCCCCEEEEEEECCCC
Confidence            567899999999888776 4889999987532111  0111112233567889997653 44566677999999997632


Q ss_pred             eeE-------eeeCCccceEEEEEcCCCCEEEEEcC-CCcEEEEECCCCc-EEEEEEecCceEEEEeecCcccceeeeee
Q psy6984         185 LKI-------NHSGHTGYLNTVTVSPDGSLCASGGK-DMNAMLWDLNDGK-HLHTLVHNDIITALCFSPNRSFQKIKLDI  255 (380)
Q Consensus       185 ~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  255 (380)
                      ...       ... ....+..++|+|+|++++++.. ++.|.+|++.... .+....      .+...|..         
T Consensus       160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~------~~~~~p~~---------  223 (330)
T PRK11028        160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ------TLDMMPAD---------  223 (330)
T ss_pred             cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE------EEecCCCc---------
Confidence            211       111 1234567899999999877765 8999999986421 111110      00000100         


Q ss_pred             eeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEeeCcc
Q psy6984         256 SRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEELRPD  334 (380)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  334 (380)
                                             .........+.++|++++|+++.+ ++.|.+|++......       ...+......
T Consensus       224 -----------------------~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-------~~~~~~~~~~  273 (330)
T PRK11028        224 -----------------------FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-------LSFEGHQPTE  273 (330)
T ss_pred             -----------------------CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-------EEEeEEEecc
Confidence                                   000011235789999999988864 789999986432110       0111111100


Q ss_pred             cccccCCCCCCceEEEEEecCCCEEEEEee-CCeEEEEEee
Q psy6984         335 VVSQSTKADPPMCLSLAWSTDGQTLFAGYS-DNTIRVWQVS  374 (380)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~-dg~v~iw~~~  374 (380)
                                .....+.++|||++|++++. ++.|.+|++.
T Consensus       274 ----------~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        274 ----------TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             ----------ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence                      11235789999999998775 8999999875

>KOG0650|consensus

Probab=99.80  E-value=4.1e-18  Score=147.52  Aligned_cols=271  Identities=17%  Similarity=0.301  Sum_probs=192.6

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCC
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~  137 (380)
                      .+.||++.|.++...|.|.+|++|+.||+|+||.+.++++++.+. ..+.|.|++|+|.+.. +++++.+..+.|-+..-
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~  473 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF  473 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence            468999999999999999999999999999999999999999875 3468999999997763 33333444455554322


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEE----EeCCCeEEEEeCCCce----eeEeeeCCccceEEEEEcCCCCEEE
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS----AGWDRMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPDGSLCA  209 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----~~~d~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~  209 (380)
                      +..+.   .+.+             ...|++    ..-+..+..|.-....    -+...-.|...|..+.|+..|.||+
T Consensus       474 G~~~e---~~~t-------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  474 GDRLE---VGPT-------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             cchhh---hcch-------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence            21110   0000             001111    1224567777644211    1112234778899999999999999


Q ss_pred             EEcCC---CcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccce
Q psy6984         210 SGGKD---MNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDV  285 (380)
Q Consensus       210 ~~~~d---~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  285 (380)
                      +...+   ..|.|+++...+...-+ .....+..+.|+|...+.++.       ....+++|++....+...+......|
T Consensus       538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-------Tq~~vRiYdL~kqelvKkL~tg~kwi  610 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-------TQRSVRIYDLSKQELVKKLLTGSKWI  610 (733)
T ss_pred             EeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-------eccceEEEehhHHHHHHHHhcCCeee
Confidence            87653   67889998776655545 456778899999987765543       34678899998877766666666778


Q ss_pred             eEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC
Q psy6984         286 LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD  365 (380)
Q Consensus       286 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d  365 (380)
                      ..++.+|.|..|+.|+.|+.+..+|+.         +.++. .         +....|...+.+|+|++.=.++++|+.|
T Consensus       611 S~msihp~GDnli~gs~d~k~~WfDld---------lsskP-y---------k~lr~H~~avr~Va~H~ryPLfas~sdD  671 (733)
T KOG0650|consen  611 SSMSIHPNGDNLILGSYDKKMCWFDLD---------LSSKP-Y---------KTLRLHEKAVRSVAFHKRYPLFASGSDD  671 (733)
T ss_pred             eeeeecCCCCeEEEecCCCeeEEEEcc---------cCcch-h---------HHhhhhhhhhhhhhhccccceeeeecCC
Confidence            899999999999999999999888753         22211 0         1123355567789999999999999999


Q ss_pred             CeEEEEE
Q psy6984         366 NTIRVWQ  372 (380)
Q Consensus       366 g~v~iw~  372 (380)
                      |++.|+.
T Consensus       672 gtv~Vfh  678 (733)
T KOG0650|consen  672 GTVIVFH  678 (733)
T ss_pred             CcEEEEe
Confidence            9999984

>KOG1240|consensus

Probab=99.80  E-value=1e-17  Score=156.03  Aligned_cols=224  Identities=15%  Similarity=0.182  Sum_probs=159.2

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc--cccccCCCcceEEEEEccCCCEEEEE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP--QKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      ...++++|.+|...|..++.++..+.+|+|||.||+||+|++..-...-...  ..++.--...+.++...+.++.+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            3568999999999999999998877899999999999999986422111111  11122234568899999999999999


Q ss_pred             eCCCcEEEEECCCC--c-----------------ee---------e---------------------------eecccCC
Q psy6984          83 SWDKTLRLWDLAAG--K-----------------TT---------R---------------------------RFEDHTK  107 (380)
Q Consensus        83 ~~d~~i~vwd~~~~--~-----------------~~---------~---------------------------~~~~h~~  107 (380)
                      +.||.|++.++.-.  +                 .+         +                           +.....+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999887531  0                 00         0                           0012245


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC--CCEEEEEe-CCCeEEEEeCCCce
Q psy6984         108 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ--NPIIVSAG-WDRMVKVWNLTNCK  184 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~-~d~~v~iwd~~~~~  184 (380)
                      .|++++.+|.+..+++|+..|.+.+||++-+.....+..++..++..+..+|..+  ...+.+++ ..+.|.+|++.++.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            7999999999999999999999999999877666666666677888888887654  33344444 67899999998764


Q ss_pred             eeEeeeC-------------------CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         185 LKINHSG-------------------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       185 ~~~~~~~-------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      ....+..                   +.-......+...+..+.+|+.|..|+.||.......
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            3322211                   1111112233344568889999999999998776543

>KOG1538|consensus

Probab=99.80  E-value=7.9e-18  Score=147.65  Aligned_cols=271  Identities=18%  Similarity=0.270  Sum_probs=181.8

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK   97 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   97 (380)
                      .|+.+++.|+...++++++  ..+.+||.....     ....+++|.+.|+|++|+.||+++++|+.|..|.+|+-.-..
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~-----llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG   86 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcc-----cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc
Confidence            8999999999555555543  488999876432     345689999999999999999999999999999999864322


Q ss_pred             eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984          98 TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV  177 (380)
Q Consensus        98 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~i  177 (380)
                      .++  -.|...|.|+.|+|-...+++++-.. .-+|....+...   .......+.+.+|..+++  +|+.|-.||+|.+
T Consensus        87 ~Lk--YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~---K~kss~R~~~CsWtnDGq--ylalG~~nGTIsi  158 (1081)
T KOG1538|consen   87 ILK--YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS---KHKSSSRIICCSWTNDGQ--YLALGMFNGTISI  158 (1081)
T ss_pred             eee--eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH---hhhhheeEEEeeecCCCc--EEEEeccCceEEe
Confidence            222  26899999999999999999887643 557864322111   111223355566665554  8999999999998


Q ss_pred             EeCCCce-eeEeee-CCccceEEEEEcCCC-----CEEEEEcCCCcEEEEECCCCcEEE-EEEecCceEEEEeecCcccc
Q psy6984         178 WNLTNCK-LKINHS-GHTGYLNTVTVSPDG-----SLCASGGKDMNAMLWDLNDGKHLH-TLVHNDIITALCFSPNRSFQ  249 (380)
Q Consensus       178 wd~~~~~-~~~~~~-~~~~~i~~~~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~~~~~~~~  249 (380)
                      -+-...+ .....+ |.+.+|++++|+|..     ..+++..-..++.++.+. |+.+. .-..+-...++.+-+++.|.
T Consensus       159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYI  237 (1081)
T ss_pred             ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEE
Confidence            8654332 222332 457899999999964     255666666666666653 33332 11223334455566666664


Q ss_pred             eeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         250 KIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      .++      ..++.+.+|. ..|-.....-....-|+.++..|++++++.|+.||+|..|++
T Consensus       238 LiG------Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  238 LLG------GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEc------cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            432      1223333332 233333333334456899999999999999999999999985

>KOG0303|consensus

Probab=99.80  E-value=6e-18  Score=139.51  Aligned_cols=129  Identities=25%  Similarity=0.391  Sum_probs=110.5

Q ss_pred             eecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcc------eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984         101 RFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHC------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus       101 ~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      .+.+|+++|.+++|+| +...+|+||.|.+|++|++....      .......+|...|.-++|+|...+ +|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            3568999999999999 55678999999999999964432      123344589999999999998654 888999999


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      +|.+||+.+++....+. |...|.++.|+-||.++++.+.|..|++||.++++.+..-
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~  211 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG  211 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence            99999999998877766 9999999999999999999999999999999999877554

>KOG1310|consensus

Probab=99.80  E-value=1.2e-18  Score=149.50  Aligned_cols=217  Identities=24%  Similarity=0.348  Sum_probs=162.3

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEe
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGS   83 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~   83 (380)
                      +.+..+|.||+|.|++++|+.+ +++|++||+|-.+.|||....+    .....-+||...|.+++|-|  +.+.+++|.
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             cchhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            4577899999999999999988 7999999999999999976433    22334579999999999988  456889999


Q ss_pred             CCCcEEEEECCC----------CceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEee-------
Q psy6984          84 WDKTLRLWDLAA----------GKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVE-------  145 (380)
Q Consensus        84 ~d~~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~-------  145 (380)
                      .|..|+++|+..          .+....+..|...|..++..|++ ..+.+++.||+++-+|++.......-+       
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            999999999974          23455677899999999999988 678899999999999986521111000       


Q ss_pred             --CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc------------------eeeE-eeeCCc-----------
Q psy6984         146 --DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC------------------KLKI-NHSGHT-----------  193 (380)
Q Consensus       146 --~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------------------~~~~-~~~~~~-----------  193 (380)
                        ...--...|+.++|... .+|+.|+.|-..++||.+..                  .++. ..++|.           
T Consensus       195 ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence              01112367899999755 48899999999999995320                  0111 112332           


Q ss_pred             cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       194 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      ..++-+.|+|+|.-|+..-....|+++|+..++..
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            12455789999987777766678999999766543

>KOG0642|consensus

Probab=99.79  E-value=9.1e-19  Score=150.54  Aligned_cols=275  Identities=18%  Similarity=0.243  Sum_probs=186.1

Q ss_pred             CCeEEEeeCCCeEEEe--ecCCCCCC------------c---ccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          29 PDTILSCSRDNTLIIW--KLTRDDTN------------Y---GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw--~~~~~~~~------------~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +...++...|...++|  ++..-...            +   .-+..++..|.+.|..+.|++....|++++.||.|++|
T Consensus       242 k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W  321 (577)
T KOG0642|consen  242 KSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW  321 (577)
T ss_pred             CCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence            3466777778888888  43211000            0   01112567788889999999999999999999999999


Q ss_pred             ECCC--------CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc---------ceEEEeeCCCcCcEEE
Q psy6984          92 DLAA--------GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH---------CKFTIVEDGHSDWVSC  154 (380)
Q Consensus        92 d~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~---------~~~~~~~~~~~~~v~~  154 (380)
                      ++..        -+++.++.+|.++|.|+++.+++..+++|+.||+|+.|++...         ..+.-...+|++.++.
T Consensus       322 nLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~  401 (577)
T KOG0642|consen  322 NLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWL  401 (577)
T ss_pred             hhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceee
Confidence            9932        1456678999999999999999999999999999999964311         1122234589999999


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCcee-eEeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-KINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      +++++...  .|++++.||+++.|+...... .+..+...+...++++-.... ..++...-+.-.+++......+..+.
T Consensus       402 l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~  479 (577)
T KOG0642|consen  402 LALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE  479 (577)
T ss_pred             eeeccccc--ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecc
Confidence            99998765  489999999999999876544 111122223344555433221 12222122222333444443333332


Q ss_pred             e--------cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         233 H--------NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       233 ~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                      .        ...+.-+.+.|...+.      .....+..+.+++...+++......|...++++++.|+|.+|++++.|+
T Consensus       480 s~~~~~~~~~~~in~vVs~~~~~~~------~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  480 SSASPGPRRYPQINKVVSHPTADIT------FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG  553 (577)
T ss_pred             ccCCCcccccCccceEEecCCCCee------EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCc
Confidence            1        1234445555544321      1223455667778888888877888888999999999999999999999


Q ss_pred             cEEEEec
Q psy6984         305 TIKLWNT  311 (380)
Q Consensus       305 ~v~iw~~  311 (380)
                      .|++|+.
T Consensus       554 sv~l~kl  560 (577)
T KOG0642|consen  554 SVRLWKL  560 (577)
T ss_pred             eeehhhc
Confidence            9999975

>KOG0649|consensus

Probab=99.79  E-value=4.2e-16  Score=120.82  Aligned_cols=275  Identities=15%  Similarity=0.241  Sum_probs=176.3

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCC---------C-ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAA---------G-KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---------~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      .|..-+++|.+++|++|..+|.|.+..+++         + ..+...+.|.+++..++|.  ..++++++. |.|+=|.-
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence            455667899999999999999999998853         1 2234457899999999998  446666654 99998863


Q ss_pred             CCcce-------EEEeeCCC-----cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC
Q psy6984         136 LAHCK-------FTIVEDGH-----SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP  203 (380)
Q Consensus       136 ~~~~~-------~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~  203 (380)
                      .....       ......-|     -..|+.+-+.|...  -++.++.|+.+..||+++++....+++|+..+.++.--.
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            22111       00111111     23477888887543  344555799999999999999999999999999998856


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecC-ccc---ceeeeeeeeeccccceEEEEcCCceeeeeee
Q psy6984         204 DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPN-RSF---QKIKLDISRTLQKSNLILYPINHGKMETPFF  279 (380)
Q Consensus       204 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (380)
                      ....+++|+.||++++||.++++.+..+........+.  |+ +++   .....+.....+...+.+|.+...+... .+
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR--p~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~-vf  243 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR--PDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTC-VF  243 (325)
T ss_pred             cCcceeecCCCccEEEEeccccceeEEeccccChhhcC--cccCceeEEEeccCceEEecCCCceeEEeccCCCceE-EE
Confidence            56678899999999999999999888775322222221  11 010   0001111122244567778776554332 23


Q ss_pred             ccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC-CE
Q psy6984         280 SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG-QT  358 (380)
Q Consensus       280 ~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~  358 (380)
                      .....+..+.|-  ...+++++..+.|.-|.+..--+.                     ..+.....|++..|+..- ++
T Consensus       244 pipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a---------------------~ip~~s~~c~s~s~~~~p~k~  300 (325)
T KOG0649|consen  244 PIPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVLQA---------------------NIPVESTACYSASWQTSPIKF  300 (325)
T ss_pred             ecccceeEeeee--cceEEEeccccceeeeeeccEEEE---------------------eccCCccceeeecccCCceEE
Confidence            334456666663  556788888888998865321110                     111223345666665553 44


Q ss_pred             EEEEeeCCeEEEE
Q psy6984         359 LFAGYSDNTIRVW  371 (380)
Q Consensus       359 l~~g~~dg~v~iw  371 (380)
                      |-.++..+.+.|+
T Consensus       301 ~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  301 ISIAGFSNKLHIL  313 (325)
T ss_pred             EEecccceeeeee
Confidence            5556677777775

>KOG1517|consensus

Probab=99.79  E-value=1.1e-16  Score=147.24  Aligned_cols=301  Identities=17%  Similarity=0.231  Sum_probs=195.5

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCCCcEEEEECC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~   94 (380)
                      +.-..+.++|- ...++++.+.-.|+|||.........+...  ..-...|+.+.+-.  |..++++|+.||.|+||+--
T Consensus      1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~--~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNG--AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCCceeeecCC-CceeEEcCCcceEEEEecccCceeccccCC--CCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            34556678886 568888887779999998654332211111  11233578887643  56789999999999999742


Q ss_pred             CC-----ceeeee---ccc----CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          95 AG-----KTTRRF---EDH----TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        95 ~~-----~~~~~~---~~h----~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      ..     +.+..+   .++    .+.-.-+.|-....+|++++.-+.|+|||...+.....+..+....++++.-+... 
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~- 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH- 1220 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC-
Confidence            21     222111   111    11112345666666777777788999999877666555554555556666554433 


Q ss_pred             CCEEEEEeCCCeEEEEeCCCcee---eEeeeCCccc--eEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEEecCc
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKL---KINHSGHTGY--LNTVTVSPDGSL-CASGGKDMNAMLWDLNDGKHLHTLVHNDI  236 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  236 (380)
                      ..+++.|..||.||+||.+....   +...+.|...  |..+.+.++|-. +++|+.||.|++||++.......+..   
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i--- 1297 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI--- 1297 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---
Confidence            35899999999999999986433   3445567766  999999987765 99999999999999986422111000   


Q ss_pred             eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccccee
Q psy6984         237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  316 (380)
Q Consensus       237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  316 (380)
                            .                     .-|+            ..+..+++..++....+|+|+. +.|+||++... +
T Consensus      1298 ------v---------------------~~~~------------yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~ 1336 (1387)
T KOG1517|consen 1298 ------V---------------------AHWE------------YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-Q 1336 (1387)
T ss_pred             ------e---------------------eccc------------cCccceeeeeccCCCeeeecCc-ceEEEEecChh-h
Confidence                  0                     0000            0123678888999999999988 99999986432 2


Q ss_pred             eeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeecc
Q psy6984         317 FTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR  378 (380)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~~  378 (380)
                      +.++...         +....+    ..+.+.+++|+|---+||+|+.|..|.||..+.+..
T Consensus      1337 l~~~k~n---------~~F~~q----~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1337 LNIIKYN---------PGFMGQ----RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred             hcccccC---------cccccC----cCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence            2111111         000000    112246899999999999999999999998876544

>KOG1587|consensus

Probab=99.78  E-value=8e-17  Score=144.91  Aligned_cols=265  Identities=17%  Similarity=0.242  Sum_probs=181.7

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcce-----EEEeeCCCcCcEEEEEEcc
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCK-----FTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~  159 (380)
                      +.+.||++.+.......-.-..+|++++|+| +..+++.|+.+|.|.+||++.+..     .......|...+..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            4799999987633333333457899999999 456778889999999999876544     2344567889999999987


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeeE-----eee-------CCccceEEEEEcC-CCCEEEEEcCCCcEEEEEC---C
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKLKI-----NHS-------GHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDL---N  223 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~-----~~~-------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~---~  223 (380)
                      +..+.-|++++.||.|..|+++......     ...       .....++++.|.+ +-..|+.|+.+|.|..-+.   .
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            6554568899999999999987533211     001       1234678899988 4567899999999887332   2


Q ss_pred             CCc------EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC-CceeeeeeeccccceeEEEEeecCC-
Q psy6984         224 DGK------HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETPFFSLFRDVLSVAFSVDNR-  295 (380)
Q Consensus       224 ~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-  295 (380)
                      .+.      ......|..++.++.++|-....+..      ..+..+.+|... .......+......+++++|||... 
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls------~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa  455 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLS------VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA  455 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeee------eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence            222      11223578889999998865443322      126677888765 4444444444445599999999875 


Q ss_pred             EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         296 QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       296 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      .|+++..||.+.+||+.....-.+.                .+  .........+.|++.|++|+.|...|.+.+|++.
T Consensus       456 vF~~~d~~G~l~iWDLl~~~~~Pv~----------------s~--~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  456 VFATVDGDGNLDIWDLLQDDEEPVL----------------SQ--KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EEEEEcCCCceehhhhhccccCCcc----------------cc--cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            5777888999999997543221110                00  0012223467799999999999999999999984

>KOG2110|consensus

Probab=99.78  E-value=6.1e-15  Score=121.05  Aligned_cols=241  Identities=16%  Similarity=0.204  Sum_probs=166.7

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC--cEEEEE
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK--TLRLWD   92 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd   92 (380)
                      -+..++.+.|+.+ ...|..|+.||. ++++.+.....       .....+.+.-+..--...++|..+.+.  .+++++
T Consensus         4 ~~~ti~~~~~Nqd-~~~lsvGs~~Gy-k~~~~~~~~k~-------~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen    4 KKPTINFIGFNQD-STLLSVGSKDGY-KIFSCSPFEKC-------FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             CCcceeeeeeccc-eeEEEccCCCce-eEEecCchHHh-------hcccCCCeEEEEeecccceeEEEecCCCceEEEEE
Confidence            3456777778876 457777888864 78876643221       111122233333333456777666654  489999


Q ss_pred             CCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE--Ee
Q psy6984          93 LAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS--AG  170 (380)
Q Consensus        93 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~  170 (380)
                      .+.+..+..+. ...+|.++.++-  ++|+..-.+. |.|||+..-..+..++.....+-.-.+++++..+.+++-  .-
T Consensus        75 ~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~  150 (391)
T KOG2110|consen   75 FKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST  150 (391)
T ss_pred             cccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence            88777776653 456799998864  4566665554 999998776655554443223333456666655556653  33


Q ss_pred             CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcE-EEEECCCCcEEEEEEecCceEEEEeecCcccc
Q psy6984         171 WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNA-MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQ  249 (380)
Q Consensus       171 ~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i-~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~  249 (380)
                      ..|.|.+||+.+.+....+..|.+.+.+++|+++|.++|+++..|+| ++|.+.+|+.+.++.....             
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------------  217 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------------  217 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------------
Confidence            46899999999999888889999999999999999999999998865 7899988887766643211             


Q ss_pred             eeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         250 KIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                                                      ...|.+++|+|++++|++.|..++|++|.+..
T Consensus       218 --------------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  218 --------------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             --------------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence                                            01366888999999998888889999997643

>KOG0322|consensus

Probab=99.78  E-value=2.2e-17  Score=129.27  Aligned_cols=290  Identities=17%  Similarity=0.231  Sum_probs=183.5

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccccc-CCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-GHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ..|++|.+.|+++.|..+  ++|++|..-|.|++|.+.....   .+  .+. .|...|+.+..-|+ ..|.+-+.|+.+
T Consensus         8 fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~---~~--~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERD---LP--LIRLFGRLFITNLQSIPN-DSLDTQGRDPLL   79 (323)
T ss_pred             eEeccccchheehhhccc--hhhhcccccceEEEEEeecCcc---ch--hhhhhccceeeceeecCC-cchhhcCCCceE
Confidence            346699999999999865  5799999999999999865431   12  233 35667888888887 678999999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeC-----CCC----EEEEEeCCC-cEEEEeCCCcceEEEee---CCCcCcEEEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSV-----DNR----QIVSSSRDK-TIKLWNTLAHCKFTIVE---DGHSDWVSCV  155 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~-----~~~----~~~s~~~d~-~v~iwd~~~~~~~~~~~---~~~~~~v~~~  155 (380)
                      .+|++.-+..+..   |.-.+.++.|.+     .++    .++.-++.. .+.+-|....+......   .+..+.+.|.
T Consensus        80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   80 ILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence            9999976544432   222333444432     111    111111110 01112211111111111   1233445665


Q ss_pred             EEc-cCCCCCEEEEEeCCCeEEEEeCCCce----------eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         156 RFS-PNHQNPIIVSAGWDRMVKVWNLTNCK----------LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       156 ~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      .+. ..+...+++.|-.+|.+.+||+....          .......|..++.++.+.+.-..=++|+.+..+..|++..
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~  236 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH  236 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence            532 23345567788889999999998863          2333456888999999988665667788888888887643


Q ss_pred             CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                      ....  +.+..                    .       +              .-....+..+..-||++.|||++-|+
T Consensus       237 s~gs--lq~~~--------------------e-------~--------------~lknpGv~gvrIRpD~KIlATAGWD~  273 (323)
T KOG0322|consen  237 STGS--LQIRK--------------------E-------I--------------TLKNPGVSGVRIRPDGKILATAGWDH  273 (323)
T ss_pred             ccCc--ccccc--------------------e-------E--------------EecCCCccceEEccCCcEEeecccCC
Confidence            2100  00000                    0       0              00012344566778999999999999


Q ss_pred             cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       305 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      .||+|+-.+...+.+                    ..-|...|.+++|+||...+|+|+.|+.|.+|++
T Consensus       274 RiRVyswrtl~pLAV--------------------LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  274 RIRVYSWRTLNPLAV--------------------LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cEEEEEeccCCchhh--------------------hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999987533222211                    1235567899999999999999999999999985

>KOG0644|consensus

Probab=99.77  E-value=1.9e-18  Score=154.91  Aligned_cols=282  Identities=23%  Similarity=0.316  Sum_probs=208.3

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      +.+..|.||-..|+|+.+... +.++++|++|..++||.-...     .......||...|+.++.+.+..++++++.|.
T Consensus       181 k~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~  254 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVSSNNTMIAAASNDK  254 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccch-----hhhccCCCCccccchhccchhhhhhhhcccCc
Confidence            344567899999999999987 789999999999999974332     23456789999999999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE---eeCCCcCcEEEEEEccCCCC
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI---VEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .|++|-+.++.++..+.+|.++|++++|+|-    ++.+.||++++||.+-......   ......+.+.++.|..++. 
T Consensus       255 vIrvWrl~~~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-  329 (1113)
T KOG0644|consen  255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-  329 (1113)
T ss_pred             eEEEEecCCCchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-
Confidence            9999999999999999999999999999994    3888999999999651111100   0001123455666655544 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVS-PDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALC  241 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~  241 (380)
                       -++|++.|+.-..|.+.....      +...+.-+..+ ....+.+++-.+-.+++|++.+|...+.. .|.+.+..+.
T Consensus       330 -~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd  402 (1113)
T KOG0644|consen  330 -RFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD  402 (1113)
T ss_pred             -ccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence             478899998888887643211      11111001111 11246677778889999999999877766 4778888888


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      ++|-.+.....     ...++...+|++-.+..+...+..+..+.+-+||+||..++....-|.++|...
T Consensus       403 ~Hpfn~ri~ms-----ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  403 VHPFNPRIAMS-----AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             ecCCCcHhhhh-----ccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence            88865432221     123567889999888766666555777888999999999998877889998865

>KOG0290|consensus

Probab=99.77  E-value=7.8e-16  Score=122.31  Aligned_cols=287  Identities=14%  Similarity=0.158  Sum_probs=185.2

Q ss_pred             ceEEEEeCC--CCCCeEEEee----CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-----EEEEEeCCC
Q psy6984          18 WVTQIATNP--KFPDTILSCS----RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-----YALSGSWDK   86 (380)
Q Consensus        18 ~v~~i~~~~--~~~~~l~t~~----~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~~~d~   86 (380)
                      .+.++.|+.  ....+|+.||    ..+.|.+-.+..+...  ........|.-+++.+-|.|+..     +|||.+  -
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e--~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D  121 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE--LVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--D  121 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc--eeccCCCCCCCCccceEecCCccccCcchhhccc--C
Confidence            466777773  2345788887    3567777766532211  12222256888899999999863     455554  3


Q ss_pred             cEEEEECCCCceee---------eecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcce--EEEeeCCCcCcEEE
Q psy6984          87 TLRLWDLAAGKTTR---------RFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCK--FTIVEDGHSDWVSC  154 (380)
Q Consensus        87 ~i~vwd~~~~~~~~---------~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~  154 (380)
                      .+++|.+...+...         +-..+..++++..|+. |.+++.+.|-|-+..|||+..+..  ......+|...|..
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D  201 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD  201 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence            79999987422111         1134667899999976 667888999999999999877522  22233479999999


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee---CCccceEEEEEcCC-CCEEEEEcCC-CcEEEEECCCCcEEE
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS---GHTGYLNTVTVSPD-GSLCASGGKD-MNAMLWDLNDGKHLH  229 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~-~~~l~~~~~d-~~i~i~d~~~~~~~~  229 (380)
                      ++|..++. .+|++.|.||.||+||++..+-.....   ....+...++|+++ -+++|+-..| ..|.+.|++....  
T Consensus       202 Iaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--  278 (364)
T KOG0290|consen  202 IAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--  278 (364)
T ss_pred             EEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--
Confidence            99998554 589999999999999998754322221   11345677777774 4566654443 5666777654321  


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKL  308 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~i  308 (380)
                                                                  ....+.+|...|..++|.|.. ..++||+.|..+-+
T Consensus       279 --------------------------------------------pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qali  314 (364)
T KOG0290|consen  279 --------------------------------------------PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALI  314 (364)
T ss_pred             --------------------------------------------ceehhhcCcccccceEecCCCCceeeecCCcceEEE
Confidence                                                        122344566677788888754 57999999999999


Q ss_pred             EecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEec-CCCEEEEEeeCCeEEEE
Q psy6984         309 WNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST-DGQTLFAGYSDNTIRVW  371 (380)
Q Consensus       309 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~g~~dg~v~iw  371 (380)
                      ||+..-..-            .......   .-.....|..+.|++ .+.+|+.+. +..+.|-
T Consensus       315 WDl~q~~~~------------~~~dPil---ay~a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL  362 (364)
T KOG0290|consen  315 WDLQQMPRE------------NGEDPIL---AYTAGGEVNQIQWSSSQPDWIAICF-GKKLEIL  362 (364)
T ss_pred             Eeccccccc------------CCCCchh---hhhccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence            987432110            0000111   111345678899996 477887654 4445544

>KOG1445|consensus

Probab=99.76  E-value=4.9e-18  Score=148.12  Aligned_cols=208  Identities=20%  Similarity=0.333  Sum_probs=148.9

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC--CcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEEC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT--NYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~   93 (380)
                      ..|+++.|+|..+..||.+++||.|++|.+..+..  ....+...+++|...|+.+.|+| ..+.|++++.|.+|++||+
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl  707 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL  707 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence            46999999998889999999999999999875433  23456678899999999999998 5678999999999999999


Q ss_pred             CCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCc-CcEEEEEEccCCCCCEEEEEeC-
Q psy6984          94 AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHS-DWVSCVRFSPNHQNPIIVSAGW-  171 (380)
Q Consensus        94 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~-  171 (380)
                      .+++...++.+|.+.|.+++|+|||+.+|+.+.||++++|..+..........+.. ..-..|.|.-++.  +++..+. 
T Consensus       708 ~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr--~viv~Gfd  785 (1012)
T KOG1445|consen  708 ANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGR--IVIVVGFD  785 (1012)
T ss_pred             hhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCc--EEEEeccc
Confidence            99999999999999999999999999999999999999998765443322211111 1112345555443  4444333 


Q ss_pred             ---CCeEEEEeCCCcee--eEeee-CCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc
Q psy6984         172 ---DRMVKVWNLTNCKL--KINHS-GHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       172 ---d~~v~iwd~~~~~~--~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  226 (380)
                         ++.|.+||..+...  ..... .-.-.+.--.+++|.. +|++|-.|..|++|.+-..+
T Consensus       786 k~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  786 KSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence               45677887654321  10000 0000111112345544 67788889999999875444

>KOG1587|consensus

Probab=99.76  E-value=2e-16  Score=142.44  Aligned_cols=251  Identities=16%  Similarity=0.176  Sum_probs=175.7

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc-cccccCCCcceEEEEEccCC--CEEEEEeCCCcEEEE
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP-QKRLKGHSHFISDIVLSSDG--NYALSGSWDKTLRLW   91 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~vw   91 (380)
                      ....|+++.++|..+++++.|..+|.|.+||+.......... ......|..+++.+.|..+-  .-+++++.||.|+.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            356899999999999999999999999999998654321111 12345788899999987543  459999999999999


Q ss_pred             ECCCCcee------eeec------ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCC---Ccc----eEEEeeCCCcCc
Q psy6984          92 DLAAGKTT------RRFE------DHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTL---AHC----KFTIVEDGHSDW  151 (380)
Q Consensus        92 d~~~~~~~------~~~~------~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~---~~~----~~~~~~~~~~~~  151 (380)
                      +++.-...      ....      .-...+++++|.+ +...++.|+.+|.|.--...   ...    +.......|...
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            87643221      1111      1123578899977 55678999999988763321   111    112233457788


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCC-CceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEE
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLT-NCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      |.++.++|=... ++++++ |-+|++|... .......+..+...++.++|||-- -.|+++..||.+.+||+....   
T Consensus       401 v~~v~~nPF~~k-~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~---  475 (555)
T KOG1587|consen  401 VYAVSRNPFYPK-NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD---  475 (555)
T ss_pred             eEeeecCCCccc-eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc---
Confidence            999999987654 455555 9999999987 555555666677779999999954 467888889999999985432   


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                          ..++......                                      ......+.|+++|+.|+.|...|++.+|
T Consensus       476 ----~~Pv~s~~~~--------------------------------------~~~l~~~~~s~~g~~lavGd~~G~~~~~  513 (555)
T KOG1587|consen  476 ----EEPVLSQKVC--------------------------------------SPALTRVRWSPNGKLLAVGDANGTTHIL  513 (555)
T ss_pred             ----cCCccccccc--------------------------------------ccccceeecCCCCcEEEEecCCCcEEEE
Confidence                1111111100                                      0122356788899999999999999999


Q ss_pred             ecc
Q psy6984         310 NTL  312 (380)
Q Consensus       310 ~~~  312 (380)
                      ++.
T Consensus       514 ~l~  516 (555)
T KOG1587|consen  514 KLS  516 (555)
T ss_pred             EcC
Confidence            863

>KOG0771|consensus

Probab=99.75  E-value=3.3e-17  Score=136.40  Aligned_cols=197  Identities=20%  Similarity=0.258  Sum_probs=140.5

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee-C
Q psy6984          68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE-D  146 (380)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~-~  146 (380)
                      .+++|+.+|..|++|+.||.+|||++.....+.....|.++|.++.|+|||+.+++-+.| ..++|+...+....... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            478999999999999999999999987777777778899999999999999999999999 89999987764333322 1


Q ss_pred             CCcCcEEEEEEccCCCCC--EEEE-EeCCCeEEEEeCCCcee----e-EeeeCCccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984         147 GHSDWVSCVRFSPNHQNP--IIVS-AGWDRMVKVWNLTNCKL----K-INHSGHTGYLNTVTVSPDGSLCASGGKDMNAM  218 (380)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~--~l~s-~~~d~~v~iwd~~~~~~----~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  218 (380)
                      .....+..++|..+..+.  ++++ ...-+.|+.||+.....    . .........|.+++++++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            222234456676554222  2222 33345677766643221    1 11111234699999999999999999999999


Q ss_pred             EEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEE
Q psy6984         219 LWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV  298 (380)
Q Consensus       219 i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  298 (380)
                      +++..+-+.++...                                              ..|..-|+.+.|+||.++++
T Consensus       307 i~~~~~lq~~~~vk----------------------------------------------~aH~~~VT~ltF~Pdsr~~~  340 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVK----------------------------------------------EAHLGFVTGLTFSPDSRYLA  340 (398)
T ss_pred             EEEeceeeeeEeeh----------------------------------------------hhheeeeeeEEEcCCcCccc
Confidence            99875543332211                                              12334577888999999999


Q ss_pred             EeeCCCcEEEEec
Q psy6984         299 SSSRDKTIKLWNT  311 (380)
Q Consensus       299 s~~~dg~v~iw~~  311 (380)
                      +.+.|....+-.+
T Consensus       341 svSs~~~~~v~~l  353 (398)
T KOG0771|consen  341 SVSSDNEAAVTKL  353 (398)
T ss_pred             ccccCCceeEEEE
Confidence            8888888777654

>KOG1334|consensus

Probab=99.74  E-value=3.3e-17  Score=138.68  Aligned_cols=310  Identities=17%  Similarity=0.231  Sum_probs=207.4

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC--CCEEEEE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD--GNYALSG   82 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~   82 (380)
                      .++|...|.+|.|.|+.+.|+.. ++.+++||+|..|.+||........    .-..||...|....|-|.  ..-+++.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l----~f~SGH~~NvfQaKFiP~s~d~ti~~~  205 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKL----SFESGHCNNVFQAKFIPFSGDRTIVTS  205 (559)
T ss_pred             HhhhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCccc----ccccccccchhhhhccCCCCCcCceec
Confidence            45677889999999999999986 7899999999999999976543221    123589888888888874  4579999


Q ss_pred             eCCCcEEEEECCCCce---eeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEE--EeeCCCcC---cEE
Q psy6984          83 SWDKTLRLWDLAAGKT---TRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFT--IVEDGHSD---WVS  153 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~---~v~  153 (380)
                      +.||.+++=.+.....   ...+..|.++|..++.-|+.. .|.+++.|+.++-.|++......  .....+..   ...
T Consensus       206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~  285 (559)
T KOG1334|consen  206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY  285 (559)
T ss_pred             cccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence            9999999877644322   345667999999999988665 57899999999999875432211  11222333   356


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceee------Eee-e-----CCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK------INH-S-----GHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------~~~-~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                      .++..|... ..+++++.|..+++||.+.....      ..+ +     .....|++++++.++.-++++-.|-.|++++
T Consensus       286 ~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  286 TIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            778887654 37889999999999998753211      111 1     2245799999998777777777888899985


Q ss_pred             CCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc--ceeEEE-EeecCCEEE
Q psy6984         222 LNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR--DVLSVA-FSVDNRQIV  298 (380)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~-~s~~~~~l~  298 (380)
                      -.-+.-      ..++.   .+|..++...                         .+.+|..  .|-.+- |-|...|++
T Consensus       365 ~~~~~G------~~p~~---~s~~~~~~k~-------------------------vYKGHrN~~TVKgVNFfGPrsEyVv  410 (559)
T KOG1334|consen  365 KSMGDG------SEPDP---SSPREQYVKR-------------------------VYKGHRNSRTVKGVNFFGPRSEYVV  410 (559)
T ss_pred             cccccC------CCCCC---Ccchhhccch-------------------------hhcccccccccceeeeccCccceEE
Confidence            332210      00000   0111111000                         0111111  122222 457889999


Q ss_pred             EeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         299 SSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       299 s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ||+.=|.|.||+-.+...+.++.....                    .|.++.=+|--..||+.+-|..|+||...
T Consensus       411 SGSDCGhIFiW~K~t~eii~~MegDr~--------------------VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  411 SGSDCGHIFIWDKKTGEIIRFMEGDRH--------------------VVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             ecCccceEEEEecchhHHHHHhhcccc--------------------eEeccCCCCCCchhhccCCccceeeecCC
Confidence            999889999998655544444322211                    34455557777889999999999999764

>KOG1523|consensus

Probab=99.74  E-value=1.6e-15  Score=122.15  Aligned_cols=206  Identities=17%  Similarity=0.239  Sum_probs=161.7

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC-C
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL-A   94 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~-~   94 (380)
                      -.+|++.+|+++ ...+|.+-....|.||.....+.  ..+..++..|...|+.+.|+|.++.|++++.|..-+||.. .
T Consensus        10 ~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~--w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen   10 LEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADL--WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             cCceeeeeecCC-CceEEeccCCceEEEEEecCCCC--ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence            469999999998 67889888888999998765431  2345678899999999999999999999999999999998 4


Q ss_pred             CC--ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE---EEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          95 AG--KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF---TIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        95 ~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      .+  ++...+..+.++.+++.|+|.++.||+|+..+.|.+|-...+..-   ..+...+...|.++.|+|++  .+|++|
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn--VLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN--VLLAAG  164 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc--ceeccc
Confidence            43  334445668899999999999999999999999999975543322   11334556678999999964  477889


Q ss_pred             eCCCeEEEEeCC-----C-------------ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         170 GWDRMVKVWNLT-----N-------------CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       170 ~~d~~v~iwd~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      +.|+..|+|..-     .             +.+..+.....+.+..+.|+|+|..|+=.+.|..+.+-|.....
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999998641     1             11222222345789999999999999999999999999876654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=4.3e-16  Score=140.78  Aligned_cols=212  Identities=17%  Similarity=0.133  Sum_probs=138.9

Q ss_pred             CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeeecccCCCeEEEEE
Q psy6984          38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD---KTLRLWDLAAGKTTRRFEDHTKDVLSVAF  114 (380)
Q Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  114 (380)
                      +..|.+||.+...      ...+..|...+....|+|||++|+..+.+   ..|++||+.+++.... ....+....++|
T Consensus       183 ~~~i~i~d~dg~~------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFN------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAF  255 (429)
T ss_pred             eEEEEEECCCCCC------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeE
Confidence            4689999876432      12356677789999999999999987654   3699999988754322 222223446899


Q ss_pred             eCCCCEEEEEe-CCCcEEEE--eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC
Q psy6984         115 SVDNRQIVSSS-RDKTIKLW--NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG  191 (380)
Q Consensus       115 ~~~~~~~~s~~-~d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  191 (380)
                      +|||+.++.++ .++...||  |+.++.... +. .+...+....|+|+++. ++++...++...+|++...........
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt-~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l~  332 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LT-SGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLVG  332 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ec-cCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEec
Confidence            99999888764 68877766  444433322 22 34445678999998764 444555677888887643211111113


Q ss_pred             CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984         192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH  271 (380)
Q Consensus       192 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (380)
                      +..  ....|+|+|++++..+.++ +.+||+.+++.....            ..                          
T Consensus       333 ~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt------------~~--------------------------  371 (429)
T PRK01742        333 GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS------------ST--------------------------  371 (429)
T ss_pred             CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec------------CC--------------------------
Confidence            333  4578999999998887754 566888766432100            00                          


Q ss_pred             ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                                 .....+.|+|||++|++++.++.+++|.+
T Consensus       372 -----------~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        372 -----------FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             -----------CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence                       00124579999999999999999888864

>KOG0771|consensus

Probab=99.74  E-value=1.3e-16  Score=132.93  Aligned_cols=195  Identities=21%  Similarity=0.243  Sum_probs=146.5

Q ss_pred             EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCcee
Q psy6984          20 TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTT   99 (380)
Q Consensus        20 ~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~   99 (380)
                      ..++++++ +..+++++.||++|+|+.+...     +......|...|.++.|+|||+.|++-+.| ..+||+++++..+
T Consensus       148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~-----t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSML-----TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCC-CCEeeeccccceEEEEecCcch-----hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence            56788887 6799999999999999965432     223456788999999999999999999999 8999999999666


Q ss_pred             eeecc--cCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEeCCCcce----EEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984         100 RRFED--HTKDVLSVAFSVDN-----RQIVSSSRDKTIKLWNTLAHCK----FTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus       100 ~~~~~--h~~~v~~~~~~~~~-----~~~~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      .....  -......+.|+.|+     ..++.....+.++.||+.....    ...........|.+++++++++  +++.
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk--f~Al  298 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK--FLAL  298 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc--EEEE
Confidence            65542  22335677888776     3344455667777776432111    0000112234589999999875  7889


Q ss_pred             EeCCCeEEEEeCCCceeeEee-eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         169 AGWDRMVKVWNLTNCKLKINH-SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      |+.||.|.+++..+.+..... ..|...|+.+.|+|+.+++++-+.|.+..+..+.
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            999999999999987766543 4688999999999999999999998888877553

>KOG1240|consensus

Probab=99.73  E-value=1.8e-15  Score=141.45  Aligned_cols=255  Identities=17%  Similarity=0.246  Sum_probs=168.3

Q ss_pred             cccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEEECCCC-------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCC
Q psy6984          57 QKRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLWDLAAG-------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK  128 (380)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~  128 (380)
                      ...+..|...|..++.++. +.++++||.||.|++||...-       +...++.-....+.++.+.+.+..+|.++.||
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            3456778888888887754 599999999999999998641       22233433456788999999999999999999


Q ss_pred             cEEEEeCCC--cceE--E--EeeCCC-cC-cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE--eeeCCccceEE
Q psy6984         129 TIKLWNTLA--HCKF--T--IVEDGH-SD-WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI--NHSGHTGYLNT  198 (380)
Q Consensus       129 ~v~iwd~~~--~~~~--~--~~~~~~-~~-~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~i~~  198 (380)
                      .|++.++..  ....  .  .+.+.+ .+ .+..-++....+...++.+...+.|..||++......  ......+.|++
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence            999998643  1111  1  111111 12 2333444443333467778888999999998754322  22234578999


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe--cCceEEEEeecCcccceeeeeeeeec-cccceEEEEcCCceee
Q psy6984         199 VTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH--NDIITALCFSPNRSFQKIKLDISRTL-QKSNLILYPINHGKME  275 (380)
Q Consensus       199 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  275 (380)
                      ++.+|.+++++.|...|.+.+||++-+.++....+  ..+++.++..|-.+....  .+..+. ..+.+.+|+..++...
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~--~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESV--SVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCce--EEEecccCCCceeeeecccCcce
Confidence            99999999999999999999999998888777654  445666666654331111  111222 4455666776665433


Q ss_pred             eeeecc-------------------ccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         276 TPFFSL-------------------FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       276 ~~~~~~-------------------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                      ..+...                   .-+.....+..-+..+++|+.|..||.||...
T Consensus      1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred             EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence            322211                   01122334444567889999999999999643

>KOG1310|consensus

Probab=99.73  E-value=9e-17  Score=138.07  Aligned_cols=240  Identities=16%  Similarity=0.297  Sum_probs=160.5

Q ss_pred             eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984          98 TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV  177 (380)
Q Consensus        98 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~i  177 (380)
                      ..+++.+|.+.|.|+.|+.+|.+|++||.|-.+.|||....+.+..+..+|...|.|+.|.|...+.++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34567899999999999999999999999999999998888888888899999999999999888889999999999999


Q ss_pred             EeCCCc----------eeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCc
Q psy6984         178 WNLTNC----------KLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR  246 (380)
Q Consensus       178 wd~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~  246 (380)
                      +|+...          +.......|...|..++.-|++ ..+.+++.||.++-+|++....-   .+...+.....+-. 
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c---~p~~~~~~~l~ny~-  197 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC---NPDEDCPSILVNYN-  197 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC---CccccccHHHHHhc-
Confidence            999742          2223345688888889999988 78999999999999999864311   00000000000000 


Q ss_pred             ccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEEEecccce-------eee
Q psy6984         247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHC-------KFT  318 (380)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~-------~~~  318 (380)
                                                       ...-+..++..+|.. .+|+.|+.|-..++||...-.       ...
T Consensus       198 ---------------------------------~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~  244 (758)
T KOG1310|consen  198 ---------------------------------PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMN  244 (758)
T ss_pred             ---------------------------------hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcccc
Confidence                                             000123477888865 468889999999999842110       000


Q ss_pred             EeecccceEEEeeCcccc--cccCCC-CCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         319 IVDLETKKMVEELRPDVV--SQSTKA-DPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ..+......+..+.+...  ++.... ....++-+.|+|+|.-|...-..-.|.+++|.
T Consensus       245 ~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  245 TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             CCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence            000001111222222221  011011 12235668899999766543334458888774

>KOG1963|consensus

Probab=99.73  E-value=6.9e-15  Score=133.31  Aligned_cols=290  Identities=18%  Similarity=0.232  Sum_probs=193.5

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .|.-.+++.+++|. ++++|++..||.|.+|.=... .........+.-|.+.|.++.|++||.+|++|+.++.+-+|.+
T Consensus       203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~-~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGS-SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             hhcccceeEEeccc-cceEEEeccCCcEEEEecccc-ccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence            35556899999998 789999999999999973220 1112234457789999999999999999999999999999999


Q ss_pred             CCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEe-------eCCCcCcEEEEEEccCCCC
Q psy6984          94 AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIV-------EDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        94 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~-------~~~~~~~v~~~~~~~~~~~  163 (380)
                      .+++ .+-++.-..+|..+.++||+.+.+....|+.|.+-....-..   ..-+       ......-...++++|..  
T Consensus       281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~--  357 (792)
T KOG1963|consen  281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRT--  357 (792)
T ss_pred             cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCC--
Confidence            9987 444555677899999999999999999999998875421110   0000       01123345667888732  


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeee-----------CCccceEEEEEcCCCCEEEEEc--------C--CCcEEEEEC
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHS-----------GHTGYLNTVTVSPDGSLCASGG--------K--DMNAMLWDL  222 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~--------~--d~~i~i~d~  222 (380)
                      ..++-.+..+.|.+||+.+.+.+..+.           .+...+.+++.+-.|.+++|.-        .  .-.+++|-.
T Consensus       358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            246667788999999997765443321           1233567777777899988863        2  235677865


Q ss_pred             CCCcEEEEE------EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee--------eee--cccccee
Q psy6984         223 NDGKHLHTL------VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET--------PFF--SLFRDVL  286 (380)
Q Consensus       223 ~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~v~  286 (380)
                      .....-..+      .|.....+.++.+..+-.    .......++.+.+|.+...+-..        ...  -+..++.
T Consensus       438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~----~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~  513 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSV----RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT  513 (792)
T ss_pred             cCCcceeEEEEEEecCCCceeEEEEEecCcccc----eeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence            443322222      255555555555432221    11112245677788774322111        111  1456788


Q ss_pred             EEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         287 SVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       287 ~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                      .++|+.||..|+ ++.|++|.+||..+
T Consensus       514 a~~fs~dGslla-~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  514 ALCFSQDGSLLA-VSFDDTITIWDYDT  539 (792)
T ss_pred             chhhcCCCcEEE-EecCCEEEEecCCC
Confidence            999999996554 57899999999755

>KOG0649|consensus

Probab=99.73  E-value=2.9e-15  Score=116.20  Aligned_cols=200  Identities=20%  Similarity=0.321  Sum_probs=144.2

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcc------c-ccccc-cCCCcceEEEEEccCCCEEEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG------V-PQKRL-KGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~------~-~~~~~-~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      ..++|.++|+.+.++.   .+|++|+ ||.|+-|.-....+...      + ++.+. .-....|+++...|..+-++.+
T Consensus        57 ~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A  132 (325)
T KOG0649|consen   57 PEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA  132 (325)
T ss_pred             eccccCCCeeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Confidence            4489999999999983   4677777 49999997653221110      0 01111 1123457888899888888888


Q ss_pred             eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC---------CCcCcEE
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED---------GHSDWVS  153 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~---------~~~~~v~  153 (380)
                      +-|+.++-||+++|+..+.+++|.+.|.++.--.....+++|+.||++|+||..+++....++.         ....||.
T Consensus       133 gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig  212 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG  212 (325)
T ss_pred             cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence            8999999999999999999999999999999855566789999999999999887766554431         1245788


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      +++.+.+     .+.|+....+.+|.++..+....++ -...+.-+.|..  ..+++++..+.+.-|-+
T Consensus       213 ala~~ed-----WlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  213 ALAVNED-----WLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             EEeccCc-----eEEecCCCceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeeeee
Confidence            8887654     3345556789999999876654443 233455566654  47778888888887765

>KOG2919|consensus

Probab=99.71  E-value=5.8e-16  Score=124.80  Aligned_cols=194  Identities=16%  Similarity=0.272  Sum_probs=147.4

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC---cccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECC
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN---YGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~   94 (380)
                      -.++.|+|+ +++|++|- .+.|+++|..+....   +....+.-.+...-+.|++|+| +.+.++.|+....+-||.-.
T Consensus       161 AhsL~Fs~D-GeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~  238 (406)
T KOG2919|consen  161 AHSLQFSPD-GEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD  238 (406)
T ss_pred             heeEEecCC-CCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence            457889998 78888666 479999998654322   2222222234466789999999 45689999999999999999


Q ss_pred             CCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCcceEEEeeCCCcC-cEEEEEEccCCCCCEEEEEeCC
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVEDGHSD-WVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      ...++..+.+|.+.|+.+.|.++|+.|.+|++ |..|..||++...........|.. --..|.|.-+.....|++|+.|
T Consensus       239 ~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td  318 (406)
T KOG2919|consen  239 GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD  318 (406)
T ss_pred             CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence            99999999999999999999999999999885 678999998764433322223332 1224666655566689999999


Q ss_pred             CeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         173 RMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       173 ~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      |.|++||+++ +........+...++.++++|--.++++++..
T Consensus       319 G~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  319 GSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            9999999988 44455666788899999999998888877654

>KOG2110|consensus

Probab=99.70  E-value=5.5e-14  Score=115.52  Aligned_cols=238  Identities=16%  Similarity=0.207  Sum_probs=157.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCcceEE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD--KTIKLWNTLAHCKFT  142 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d--~~v~iwd~~~~~~~~  142 (380)
                      ..+....|+.+...|..|+.|| -++|..+..............|...-|+  ..++|..+.+  +.+++.+..++..+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence            3466677999999999999998 5677766543322112222335555555  4455554443  458888877665544


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee---CCccceEEEEEcCCCCEEEEEc--CCCcE
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS---GHTGYLNTVTVSPDGSLCASGG--KDMNA  217 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~--~d~~i  217 (380)
                      ...  ....|-+++++..    .|+.+= ...|.|||+++.++.....   .+...+.++++++.+.+++--+  ..|.|
T Consensus        83 e~~--fpt~IL~VrmNr~----RLvV~L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   83 EIF--FPTSILAVRMNRK----RLVVCL-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             EEe--cCCceEEEEEccc----eEEEEE-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            332  3445888888753    244443 3459999999988765432   3444566677777777877532  34777


Q ss_pred             EEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984         218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  297 (380)
                      .+||..+-+++.                                               .+..|.+++.+++|+++|.+|
T Consensus       156 ~l~d~~nl~~v~-----------------------------------------------~I~aH~~~lAalafs~~G~ll  188 (391)
T KOG2110|consen  156 VLFDTINLQPVN-----------------------------------------------TINAHKGPLAALAFSPDGTLL  188 (391)
T ss_pred             EEEEcccceeee-----------------------------------------------EEEecCCceeEEEECCCCCEE
Confidence            777765544332                                               233455678899999999999


Q ss_pred             EEeeCCCc-EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         298 VSSSRDKT-IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       298 ~s~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      ||+|+-|+ ||++.+           .....+.+++.+..       +..+.+++|+||+++|++.++.++|.||.++..
T Consensus       189 ATASeKGTVIRVf~v-----------~~G~kl~eFRRG~~-------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  189 ATASEKGTVIRVFSV-----------PEGQKLYEFRRGTY-------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEeccCceEEEEEEc-----------CCccEeeeeeCCce-------eeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            99999886 566655           33444444443322       345789999999999999999999999998765


Q ss_pred             c
Q psy6984         377 S  377 (380)
Q Consensus       377 ~  377 (380)
                      .
T Consensus       251 ~  251 (391)
T KOG2110|consen  251 S  251 (391)
T ss_pred             c
Confidence            4

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=6.7e-14  Score=122.71  Aligned_cols=255  Identities=13%  Similarity=0.226  Sum_probs=156.6

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEe-eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSC-SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~-~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++++..++. +.+....+.++|+ +++|+.+ ..++.|.+|++.... .... ..... .......+.++|++++|++++
T Consensus        24 ~l~~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g-~l~~-~~~~~-~~~~p~~i~~~~~g~~l~v~~   98 (330)
T PRK11028         24 ALTLLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDG-ALTF-AAESP-LPGSPTHISTDHQGRFLFSAS   98 (330)
T ss_pred             ceeeeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCC-ceEE-eeeec-CCCCceEEEECCCCCEEEEEE
Confidence            344555554 3466778899997 5666554 568899999986321 1111 11111 122356799999999988876


Q ss_pred             C-CCcEEEEECCCC-ce---eeeecccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceEEE-----eeCCCcCcE
Q psy6984          84 W-DKTLRLWDLAAG-KT---TRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKFTI-----VEDGHSDWV  152 (380)
Q Consensus        84 ~-d~~i~vwd~~~~-~~---~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~~~-----~~~~~~~~v  152 (380)
                      . ++.|.+|++.+. ..   ...+ .+......++++|+++++++ ...++.|.+||+.+...+..     .........
T Consensus        99 ~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p  177 (330)
T PRK11028         99 YNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP  177 (330)
T ss_pred             cCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence            4 789999999643 22   2222 22344677889999998865 45679999999765322110     011112235


Q ss_pred             EEEEEccCCCCCEEEEE-eCCCeEEEEeCCC--cee--eEeeeC------CccceEEEEEcCCCCEEEEEcC-CCcEEEE
Q psy6984         153 SCVRFSPNHQNPIIVSA-GWDRMVKVWNLTN--CKL--KINHSG------HTGYLNTVTVSPDGSLCASGGK-DMNAMLW  220 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~--~~~--~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~  220 (380)
                      ..++|+|+++  +++++ ..++.|.+|++..  .+.  ......      +......+.++|++++++++.. ++.|.+|
T Consensus       178 ~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~  255 (330)
T PRK11028        178 RHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF  255 (330)
T ss_pred             ceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence            6789999865  45444 4489999999973  222  222211      1122346889999999888754 6889999


Q ss_pred             ECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe
Q psy6984         221 DLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       221 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  300 (380)
                      ++........+.        ...+                          .+          .....++++|+|++|+++
T Consensus       256 ~i~~~~~~~~~~--------~~~~--------------------------~~----------~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        256 SVSEDGSVLSFE--------GHQP--------------------------TE----------TQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             EEeCCCCeEEEe--------EEEe--------------------------cc----------ccCCceEECCCCCEEEEE
Confidence            875432111100        0000                          00          112357899999999877


Q ss_pred             eC-CCcEEEEec
Q psy6984         301 SR-DKTIKLWNT  311 (380)
Q Consensus       301 ~~-dg~v~iw~~  311 (380)
                      .. +++|.+|++
T Consensus       292 ~~~~~~v~v~~~  303 (330)
T PRK11028        292 GQKSHHISVYEI  303 (330)
T ss_pred             EccCCcEEEEEE
Confidence            75 899999975

>KOG1517|consensus

Probab=99.70  E-value=2.7e-15  Score=138.31  Aligned_cols=252  Identities=18%  Similarity=0.242  Sum_probs=168.6

Q ss_pred             cceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCC-CCccccc--cccc----CCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984          17 GWVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDD-TNYGVPQ--KRLK----GHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        17 ~~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~-~~~~~~~--~~~~----~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ..|+++.+-.. ...++++|+.||.||||+--... ....+..  ..+.    +-.+.=.-+.|.....+|+++|.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            46888885543 45689999999999999743221 1111100  0011    111111235577666677777767899


Q ss_pred             EEEECCCCceeeeeccc-CCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCcce--EEEeeCCCcCc--EEEEEEccCCC
Q psy6984          89 RLWDLAAGKTTRRFEDH-TKDVLSVAFS-VDNRQIVSSSRDKTIKLWNTLAHCK--FTIVEDGHSDW--VSCVRFSPNHQ  162 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h-~~~v~~~~~~-~~~~~~~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~  162 (380)
                      +|||....+....+... ...|+++.-+ +.|+.+++|..||.|++||.+-...  .......|+++  |..+.+.+.+-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            99999887776665432 3346666653 3578999999999999999754322  33444567776  88899988664


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeE--eeeCCc--c-ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCce
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKI--NHSGHT--G-YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~--~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      . .|++|+.||.|++||++......  ....|.  + ..+++..+++...+|+|+. +.|.||++. |+.+..+..+   
T Consensus      1270 ~-elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n--- 1343 (1387)
T KOG1517|consen 1270 G-ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYN--- 1343 (1387)
T ss_pred             c-ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccC---
Confidence            4 68999999999999999742211  111222  3 4899999999999999999 899999984 3333222211   


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                            |  .+                             +-.....+.|++|+|-.-.||.|+.|.+|.+|..
T Consensus      1344 ------~--~F-----------------------------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1344 ------P--GF-----------------------------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             ------c--cc-----------------------------ccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence                  1  00                             0011234679999999999999999999999964

>KOG4227|consensus

Probab=99.68  E-value=6.8e-15  Score=121.69  Aligned_cols=264  Identities=15%  Similarity=0.225  Sum_probs=173.5

Q ss_pred             cccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC------Cceeeeec-ccCCCeEEEEEeCCCCEEEEEeCC
Q psy6984          55 VPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA------GKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRD  127 (380)
Q Consensus        55 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d  127 (380)
                      +.++.+.+|.+.|+++.|+.++++|++|+.|..+++|++..      .+++.... .|...|.|++|....+++.+|..+
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            34567789999999999999999999999999999999853      24444433 355789999999999999999999


Q ss_pred             CcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee---eEeeeCCccceEEEEEcC
Q psy6984         128 KTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL---KINHSGHTGYLNTVTVSP  203 (380)
Q Consensus       128 ~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~  203 (380)
                      ++|..-|+.+...+.... ......|..+..+|.  .+.|++.+.++.|.+||.+....   ............++.|+|
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            999999988766554432 222347889999987  34788999999999999986431   112222334567788999


Q ss_pred             CC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984         204 DG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF  282 (380)
Q Consensus       204 ~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (380)
                      .. .+|++.+..+-+.+||.+.....                   ......         .            ..+....
T Consensus       205 ~~P~Li~~~~~~~G~~~~D~R~~~~~-------------------~~~~~~---------~------------~~L~~~~  244 (609)
T KOG4227|consen  205 ETPALILVNSETGGPNVFDRRMQARP-------------------VYQRSM---------F------------KGLPQEN  244 (609)
T ss_pred             CCceeEEeccccCCCCceeeccccch-------------------HHhhhc---------c------------ccCcccc
Confidence            54 57788888899999998754311                   000000         0            0000000


Q ss_pred             cceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE
Q psy6984         283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG  362 (380)
Q Consensus       283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g  362 (380)
                      ..-.++.|+|+|..|++--....=.+||+..++.. ++.....       +     ..-.....+.+++|..| ..+++|
T Consensus       245 ~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N-------~-----~GY~N~~T~KS~~F~~D-~~v~tG  310 (609)
T KOG4227|consen  245 TEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHN-------P-----NGYCNIKTIKSMTFIDD-YTVATG  310 (609)
T ss_pred             hhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCC-------C-----Ccceeeeeeeeeeeecc-eeeecc
Confidence            11235678888888876544444445555432211 1111100       0     00011123457777544 458999


Q ss_pred             eeCCeEEEEEee
Q psy6984         363 YSDNTIRVWQVS  374 (380)
Q Consensus       363 ~~dg~v~iw~~~  374 (380)
                      +.+=.|.||.+.
T Consensus       311 SD~~~i~~WklP  322 (609)
T KOG4227|consen  311 SDHWGIHIWKLP  322 (609)
T ss_pred             CcccceEEEecC
Confidence            999999999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.1e-14  Score=131.66  Aligned_cols=219  Identities=18%  Similarity=0.216  Sum_probs=145.0

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCC---CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CC
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRD---NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WD   85 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d   85 (380)
                      ..+..|...+.+..|+|+ ++.|+.++.+   ..|.+||+......   ....+.+|   ...++|+|||++|+.++ .+
T Consensus       197 ~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~---~l~~~~g~---~~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARK---VVASFRGH---NGAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             eEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceE---EEecCCCc---cCceeECCCCCEEEEEEecC
Confidence            346678888999999998 6777776643   37999998643211   11223343   34689999999888765 67


Q ss_pred             CcEEE--EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCc-ceEEEeeCCCcCcEEEEEEccCC
Q psy6984          86 KTLRL--WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAH-CKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        86 ~~i~v--wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      |.+.|  ||+.+++. ..+..+...+....|+|||+.++.++ .++..++|++... .....+  .+..  .+..|+|++
T Consensus       270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG  344 (429)
T PRK01742        270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG--YSAQISADG  344 (429)
T ss_pred             CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC--CCccCCCCC
Confidence            76554  56666554 44555666788899999999877555 6788899975432 112222  2222  356789987


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC--CCCcEEEEEE-ecCceE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL--NDGKHLHTLV-HNDIIT  238 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~-~~~~i~  238 (380)
                      +  .++..+.++ +.+||+.+++.......+  ....+.|+|+|++++.++.++...+|++  .+++.+..+. ++..+.
T Consensus       345 ~--~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~  419 (429)
T PRK01742        345 K--TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVK  419 (429)
T ss_pred             C--EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCC
Confidence            6  455555554 556999877644322222  2356789999999999999998888875  3466666554 455567


Q ss_pred             EEEeecC
Q psy6984         239 ALCFSPN  245 (380)
Q Consensus       239 ~~~~~~~  245 (380)
                      ..+|+|-
T Consensus       420 ~p~wsp~  426 (429)
T PRK01742        420 FPAWSPY  426 (429)
T ss_pred             CcccCCC
Confidence            7778763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=3.1e-12  Score=112.18  Aligned_cols=317  Identities=13%  Similarity=0.144  Sum_probs=174.6

Q ss_pred             CeE-EEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          30 DTI-LSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        30 ~~l-~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      +++ ++-..+|.|.+.|......     ..++....+.-..+.++|||+++++.+.||.|.++|+.+.+.+.++..- ..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~-----~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~   79 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKV-----VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GN   79 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SE-----EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SE
T ss_pred             cEEEEEecCCCEEEEEECCCCeE-----EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CC
Confidence            344 4555789999998754322     2223322222345779999999999999999999999999998888653 45


Q ss_pred             eEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCC------CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984         109 VLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDG------HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       109 v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                      ..++++++||++++++. ..+.+.++|..+.+....+..+      ....+..+..+|.... ++++.-..+.|.+.|..
T Consensus        80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-FVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-EEEEETTTTEEEEEETT
T ss_pred             cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-EEEEEccCCeEEEEEec
Confidence            68899999999988765 6889999997765554443321      2334666776665432 44444445888888876


Q ss_pred             CceeeE-eeeCCccceEEEEEcCCCCEEEE-EcCCCcEEEEECCCCcEEEEEEe-----cCceEEEEeecCc-ccceee-
Q psy6984         182 NCKLKI-NHSGHTGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLNDGKHLHTLVH-----NDIITALCFSPNR-SFQKIK-  252 (380)
Q Consensus       182 ~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~-----~~~i~~~~~~~~~-~~~~~~-  252 (380)
                      +.+... .............|+|++++++. ...+..+-++|..+++.+..+..     +.+...+ .+|.. ..-... 
T Consensus       159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~  237 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSG  237 (369)
T ss_dssp             TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEB
T ss_pred             cccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecc
Confidence            643222 22223345677899999998765 45677999999998877665532     2222221 11211 000000 


Q ss_pred             --eeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe----eCCCcEEEEecccceeeeEeecccce
Q psy6984         253 --LDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS----SRDKTIKLWNTLAHCKFTIVDLETKK  326 (380)
Q Consensus       253 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~v~iw~~~~~~~~~~~~~~~~~  326 (380)
                        ...........+.+++....+........... .-+..+|+++++...    ...++|.++|..+           .+
T Consensus       238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-----------l~  305 (369)
T PF02239_consen  238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-----------LK  305 (369)
T ss_dssp             SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-----------TE
T ss_pred             ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-----------cc
Confidence              00000011122223444444444444433344 567889999999887    3457888887543           33


Q ss_pred             EEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe--eCCeEEEEEee
Q psy6984         327 MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY--SDNTIRVWQVS  374 (380)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~--~dg~v~iw~~~  374 (380)
                      .+..+...        ....+..+.|++||+.+....  .++.|.|||..
T Consensus       306 ~~~~i~~~--------~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  306 VVKTITPG--------PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             EEE-HHHH--------HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             eeEEEecc--------CCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            22222110        011266889999999876544  34479999864

...

>KOG1524|consensus

Probab=99.66  E-value=2.4e-15  Score=129.08  Aligned_cols=188  Identities=18%  Similarity=0.283  Sum_probs=146.1

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .....+..|.+.|.+-.|+|+ +.-|+|++.||.|++|...      ++...++......|.|++|.|+++.++-+.. +
T Consensus        95 rVE~sv~AH~~A~~~gRW~~d-GtgLlt~GEDG~iKiWSrs------GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~  166 (737)
T KOG1524|consen   95 RVERSISAHAAAISSGRWSPD-GAGLLTAGEDGVIKIWSRS------GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G  166 (737)
T ss_pred             hhhhhhhhhhhhhhhcccCCC-CceeeeecCCceEEEEecc------chHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence            345567789999999999998 6889999999999999743      2223344556678999999999876655443 4


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      .+.|=.+..+..+-+++.|.+-|.++.|++..+.+++|+.|-..++||......+  ....|.-+|++++|+|+.   .+
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf--~S~~~ey~ITSva~npd~---~~  241 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF--TSAAEEYAITSVAFNPEK---DY  241 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc--cCChhccceeeeeecccc---ce
Confidence            6777777777777788999999999999999999999999999999997654433  334678889999999972   34


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEE
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML  219 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i  219 (380)
                      +.++.+ ++|           ..+...+.|..++|++||..++.|...|.+.+
T Consensus       242 ~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  242 LLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            444432 333           11234678999999999999999998888765

>KOG1523|consensus

Probab=99.66  E-value=2.7e-14  Score=115.13  Aligned_cols=220  Identities=15%  Similarity=0.194  Sum_probs=159.3

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce
Q psy6984          64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  140 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~  140 (380)
                      ..+|+|-+|++|...+|.+-....|.||....++   ...++..|...|+++.|+|..+.|++++.|+.-.+|....+..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            4578999999999999999999999999987765   5677889999999999999999999999999999998743322


Q ss_pred             --EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee----EeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         141 --FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       141 --~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                        .......+...+.|+.|+|+.+  .|++|+.-..|.+|-++...--    .....+...|.+++|+|++-++++|+.|
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence              2222234667799999999754  6889998899998877643211    1223456789999999999999999999


Q ss_pred             CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      +..++|..-    ++.+  ++....--|....+|..                       +...+....+-+..+.|+|+|
T Consensus       168 ~k~rVfSay----IK~V--dekpap~pWgsk~PFG~-----------------------lm~E~~~~ggwvh~v~fs~sG  218 (361)
T KOG1523|consen  168 GKCRVFSAY----IKGV--DEKPAPTPWGSKMPFGQ-----------------------LMSEASSSGGWVHGVLFSPSG  218 (361)
T ss_pred             cceeEEEEe----eecc--ccCCCCCCCccCCcHHH-----------------------HHHhhccCCCceeeeEeCCCC
Confidence            999998631    1111  11110001111111111                       111111233557889999999


Q ss_pred             CEEEEeeCCCcEEEEecccc
Q psy6984         295 RQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       295 ~~l~s~~~dg~v~iw~~~~~  314 (380)
                      ..|+-.+.|.+|.+=|....
T Consensus       219 ~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  219 NRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             CEeeEecCCCceEEeecCCC
Confidence            99999999999998776544

>KOG2139|consensus

Probab=99.66  E-value=9.4e-14  Score=113.90  Aligned_cols=194  Identities=16%  Similarity=0.244  Sum_probs=130.8

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCC-CEEEEEeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG-NYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~   95 (380)
                      -.+..++||+. -..|+.+..|-+||+|+-+..     .+..--...+..|+|++|-|.+ +-|+.|.. +.|.+|....
T Consensus        99 ~dlr~~aWhqH-~~~fava~nddvVriy~ksst-----~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~  171 (445)
T KOG2139|consen   99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSST-----CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSR  171 (445)
T ss_pred             cceeeEeechh-hhhhhhhccCcEEEEeccCCC-----CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCc
Confidence            35677899986 467888999999999986541     1211112234569999999865 44555554 5699998643


Q ss_pred             ----Cce----------eeeecccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          96 ----GKT----------TRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        96 ----~~~----------~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                          ++.          +.+..+| .+|+++.|.+||..+++++ .|..|+|||...+........+ -..+.-+.|+|+
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slLkwSPd  249 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLKWSPD  249 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeEEEcCC
Confidence                111          1122344 5799999999999999887 5679999998776655544222 345778999998


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      +.  +|+.+.-|+.-++|+.....-......-.+.|....|+|+|+.|+..... .-.+|.+
T Consensus       250 gd--~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl  308 (445)
T KOG2139|consen  250 GD--VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSL  308 (445)
T ss_pred             CC--EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC-CceEEEE
Confidence            75  68888889999999665422111112234589999999999987655442 3344443

>KOG3881|consensus

Probab=99.65  E-value=2.6e-14  Score=118.24  Aligned_cols=214  Identities=17%  Similarity=0.241  Sum_probs=163.7

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-EEEEEeCC--CcEEEEECCCCceeeeeccc
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-YALSGSWD--KTLRLWDLAAGKTTRRFEDH  105 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d--~~i~vwd~~~~~~~~~~~~h  105 (380)
                      ...|++|-.+|.+.+|.....+.. ..+...+..+ ..+..+.-++... .+++|+..  ..+.+||+...+.+..-..-
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~h-ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLH-SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccc-cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            457899999999999998754422 1122223322 3455666666544 45669998  89999999887555443221


Q ss_pred             C---------CCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984         106 T---------KDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus       106 ~---------~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      .         -.++++.|-+.  ...||+++.-+.+++||...+.+......-.+..+.++...|.+.  ++++|..-+.
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn--~Iy~gn~~g~  270 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN--FIYTGNTKGQ  270 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCc--EEEEecccch
Confidence            1         12568889877  789999999999999998876665554444567799999988764  6899999999


Q ss_pred             EEEEeCCCceeeEe-eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCc
Q psy6984         175 VKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR  246 (380)
Q Consensus       175 v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~  246 (380)
                      +..||++..++... +.+..+.|.++..+|..+++++++.|+.++|+|+.+.+.++....+...+.+.+.++.
T Consensus       271 l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  271 LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             hheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            99999999887665 7778899999999999999999999999999999998878777777778888776653

>KOG2394|consensus

Probab=99.65  E-value=4.4e-15  Score=127.48  Aligned_cols=169  Identities=25%  Similarity=0.356  Sum_probs=130.5

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC----Cc---------cc----------ccccccCCCcceEEEEEc
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT----NY---------GV----------PQKRLKGHSHFISDIVLS   73 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~----~~---------~~----------~~~~~~~h~~~v~~~~~~   73 (380)
                      ..|++|.|-|..+.+++.+=.+|.+.++|......    .+         .+          |..+..--+..|+..+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            68999999998677788888899999997642110    00         00          111112223467789999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984          74 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS  153 (380)
Q Consensus        74 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~  153 (380)
                      |||++||+.+.||.++|+|..+.+++..++..-+...|++|+|||+++++|+.|..|.+|.+.. ++.....++|..||.
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVS  378 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc-ceEEEecccccccee
Confidence            9999999999999999999998888877777778899999999999999999999999998654 455666789999999


Q ss_pred             EEEEccC-------------------------------C---------------CCCEEEEEeCCCeEEEEeCCCceee
Q psy6984         154 CVRFSPN-------------------------------H---------------QNPIIVSAGWDRMVKVWNLTNCKLK  186 (380)
Q Consensus       154 ~~~~~~~-------------------------------~---------------~~~~l~s~~~d~~v~iwd~~~~~~~  186 (380)
                      .++|.|=                               +               -...|.+.+.|.++.+||+....+.
T Consensus       379 ~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  379 VVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             eEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence            9999830                               0               0113667888999999999865543

>KOG1409|consensus

Probab=99.64  E-value=8.4e-14  Score=113.45  Aligned_cols=211  Identities=19%  Similarity=0.286  Sum_probs=145.2

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      .+.+.+.+.||.+.|+....-|. .+-+++.+.|.++|||-.. +..++.....  ..-..++++..+.++...|+.|-.
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkr-ds~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~   88 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKR-DSGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQD   88 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEec-cccccCchhh--hhCCCCceEeeeeccceEEEEEEe
Confidence            45577889999999999998887 5789999999999999543 3333322111  112345788899999999999999


Q ss_pred             CCcEEEEECCC----CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          85 DKTLRLWDLAA----GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        85 d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      +|++.=+.+..    ....+.+..|...+..+-|+...+.+++.+.|..+.---...++.+.-...  ..+..++.+.- 
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~t~~~~d~-  165 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPASALQFDA-  165 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe--eccCCCCceee-
Confidence            99998886643    344566778999999999999899999999998764322222222110000  00000111110 


Q ss_pred             CCCCEEEEEeCCCeEEEEeC--CCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q psy6984         161 HQNPIIVSAGWDRMVKVWNL--TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  225 (380)
                         .+.+.|...+.|..-.+  ....+...+.+|...+.++.|.|..+.+.+|..|..+.+||+.-.
T Consensus       166 ---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  166 ---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             ---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence               12334444455544333  345667788899999999999999999999999999999998543

>KOG1354|consensus

Probab=99.63  E-value=8.9e-15  Score=119.05  Aligned_cols=259  Identities=20%  Similarity=0.309  Sum_probs=163.4

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce----EEEeeCCCc------------CcEEEEEEccCCCCCEEEEEe
Q psy6984         107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK----FTIVEDGHS------------DWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      .-|.++.|...|.+||+|..+|.|.++.......    .....+.|.            ..|..++|.+.+....++..+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            4578899999999999999999999997433221    222223332            357778998887777778888


Q ss_pred             CCCeEEEEeCCCcee------------------------------------eEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         171 WDRMVKVWNLTNCKL------------------------------------KINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       171 ~d~~v~iwd~~~~~~------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      .|.+|++|.+.....                                    ......|...|++++++.|++.++++ .|
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd  184 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD  184 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence            899999998743110                                    01123578889999999999998876 67


Q ss_pred             CcEEEEECCCCcEEEEEE---------ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee-------e---
Q psy6984         215 MNAMLWDLNDGKHLHTLV---------HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM-------E---  275 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---  275 (380)
                      -+|.+|+++-...-..+.         ....|++..|+|..-...     .=...++.+.+.+++...+       .   
T Consensus       185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f-----~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF-----VYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE-----EEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            899999986543322221         133467777777532111     1112356666666542211       0   


Q ss_pred             -----e-eeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEE
Q psy6984         276 -----T-PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLS  349 (380)
Q Consensus       276 -----~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (380)
                           . .+.+.-..|.++.|+++|+|+++-+. -+|++||.....+    ..++-++.+.++...........--.-+.
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~----pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK----PVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC----cceEEeehHhHHHHHHHHhhccchhheeE
Confidence                 0 11122246889999999999997543 6899999732211    01122222223322222222222222357


Q ss_pred             EEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         350 LAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       350 ~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      ++||-++..++||+..+.++++++.-+
T Consensus       335 c~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  335 CSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EEEcCCcceEecccccceEEEecCCCC
Confidence            899999999999999999999985433

>KOG0322|consensus

Probab=99.63  E-value=1.2e-14  Score=114.17  Aligned_cols=203  Identities=22%  Similarity=0.370  Sum_probs=144.1

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC--------------Cccc--------cc---------------
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT--------------NYGV--------PQ---------------   57 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~--------------~~~~--------~~---------------   57 (380)
                      |...|+.+..-|.  +.+.+=+.|+.+.+|++.....              .+..        ..               
T Consensus        55 g~~~it~lq~~p~--d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   55 GRLFITNLQSIPN--DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             ccceeeceeecCC--cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            4567888877764  5788888999999998753100              0000        00               


Q ss_pred             -----------ccccCCCcceEEEEEc-cCCC--EEEEEeCCCcEEEEECCCCc----------eeeeecccCCCeEEEE
Q psy6984          58 -----------KRLKGHSHFISDIVLS-SDGN--YALSGSWDKTLRLWDLAAGK----------TTRRFEDHTKDVLSVA  113 (380)
Q Consensus        58 -----------~~~~~h~~~v~~~~~~-~~~~--~l~s~~~d~~i~vwd~~~~~----------~~~~~~~h~~~v~~~~  113 (380)
                                 ..-.+..+.+.|..+. .+++  +|++|.++|.+.+||+.++.          .......|..+|.++.
T Consensus       133 ~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld  212 (323)
T KOG0322|consen  133 GGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD  212 (323)
T ss_pred             cCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence                       0001122334455532 2333  45678899999999999873          3334457999999999


Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCcce---EE-EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee
Q psy6984         114 FSVDNRQIVSSSRDKTIKLWNTLAHCK---FT-IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH  189 (380)
Q Consensus       114 ~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  189 (380)
                      +.+.-..=++|+.+..+..|.+.....   .. .....| ..+..+++-|++  .+++|+++|+.||+|..++......+
T Consensus       213 yas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVL  289 (323)
T KOG0322|consen  213 YASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVL  289 (323)
T ss_pred             echhhcCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhh
Confidence            988766778888888899997543211   00 111112 236678888875  48999999999999999998888888


Q ss_pred             eCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         190 SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      +-|...|++++|+|+.+++|+++.|++|.+|++
T Consensus       290 kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  290 KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            889999999999999999999999999999985

>KOG2111|consensus

Probab=99.60  E-value=1.9e-11  Score=98.96  Aligned_cols=238  Identities=15%  Similarity=0.197  Sum_probs=152.6

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCC------CcEEE
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWD------KTLRL   90 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d------~~i~v   90 (380)
                      ...+++|+.+ ...++.|.+ .-.|+|++++-.+....     +-+...+.-+..---.++|+ .||.+      ..|.|
T Consensus         7 ~~lsvs~NQD-~ScFava~~-~Gfriyn~~P~ke~~~r-----~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    7 KTLSVSFNQD-HSCFAVATD-TGFRIYNCDPFKESASR-----QFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             ceeEEEEccC-CceEEEEec-CceEEEecCchhhhhhh-----ccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEE
Confidence            3445889876 345665554 56899998764322111     11111111122111234544 34332      46999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE-EEeeC-CCcCcEEEEEEccCCCCCEEEE
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF-TIVED-GHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ||-...+.+.++. ...+|.++.+.++  +++.. ..+.|.+|......+. ..++. .......  ++.|.....+|+-
T Consensus        80 WDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC--~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   80 WDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLC--SLCPTSNKSLLAF  153 (346)
T ss_pred             EecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceE--eecCCCCceEEEc
Confidence            9966666666654 4578999999865  44444 4567999986533222 22221 1122233  3334333334433


Q ss_pred             -EeCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEEecCceEEEEeec
Q psy6984         169 -AGWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDMN-AMLWDLNDGKHLHTLVHNDIITALCFSP  244 (380)
Q Consensus       169 -~~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~i~~~~~~~  244 (380)
                       |-.-|.|.+-|+...+.  ......|...|.+++++-+|..+|++|..|+ |+|||..+|+.+.++....         
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~---------  224 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV---------  224 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC---------
Confidence             44458999999987655  4677889999999999999999999999886 5899999998877654221         


Q ss_pred             CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                                                          ....+++++|||+..+|+.+|.-|++.|+.+..
T Consensus       225 ------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  225 ------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             ------------------------------------chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence                                                012477899999999999999999999998754

>KOG4497|consensus

Probab=99.60  E-value=1e-12  Score=106.69  Aligned_cols=271  Identities=18%  Similarity=0.239  Sum_probs=177.3

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~   95 (380)
                      +.|..|.|..+.-..|-....|+.|.+|++...+-.     .....-.+++..+.|+|||+.+ .+...+-.|.||.+.+
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~-----ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY-----CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT  123 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeE-----EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence            467778888763333444678999999998654321     1234456778999999999655 5667788999999987


Q ss_pred             Cceeeeeccc-CCCeEEEEEeCCCCEEEEEeCC------------------------------------CcEEEEeCCCc
Q psy6984          96 GKTTRRFEDH-TKDVLSVAFSVDNRQIVSSSRD------------------------------------KTIKLWNTLAH  138 (380)
Q Consensus        96 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~~~d------------------------------------~~v~iwd~~~~  138 (380)
                      .+...  ..| +..+..++|+|||++.+..++-                                    ..+-+||..-+
T Consensus       124 ~~~~~--~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le  201 (447)
T KOG4497|consen  124 QKGYL--LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE  201 (447)
T ss_pred             ceeEE--ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence            54432  223 2346788999999988776542                                    23334443222


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC---------------ce-------------------
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN---------------CK-------------------  184 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~---------------~~-------------------  184 (380)
                      .+....  ...-.+..+.|+|.++  +|+.|+.|+.+|+.+--+               ..                   
T Consensus       202 ykv~aY--e~~lG~k~v~wsP~~q--flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL  277 (447)
T KOG4497|consen  202 YKVYAY--ERGLGLKFVEWSPCNQ--FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL  277 (447)
T ss_pred             heeeee--eeccceeEEEeccccc--eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence            221111  1123467789999655  799999999998854210               00                   


Q ss_pred             ----------------e----------e------EeeeCCccceEEEEEcCCCCEEEEEcCC--CcEEEEECCCCcEEEE
Q psy6984         185 ----------------L----------K------INHSGHTGYLNTVTVSPDGSLCASGGKD--MNAMLWDLNDGKHLHT  230 (380)
Q Consensus       185 ----------------~----------~------~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~  230 (380)
                                      .          .      ..++.....+..++|++|..++++-...  +.+.+||++.-+.-..
T Consensus       278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~av  357 (447)
T KOG4497|consen  278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAV  357 (447)
T ss_pred             ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhh
Confidence                            0          0      0001112346678999999999887654  6889999987765555


Q ss_pred             EEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984         231 LVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       231 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      +....+|+...|.|..+...+.      .++..+++|.......+.. ....-.|..+.|..+|..++-++.|..
T Consensus       358 LiQk~piraf~WdP~~prL~vc------tg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  358 LIQKHPIRAFEWDPGRPRLVVC------TGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             hhhccceeEEEeCCCCceEEEE------cCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            6678889999999987653322      2455678887765443321 122256889999999999999998864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=5.6e-13  Score=120.46  Aligned_cols=186  Identities=19%  Similarity=0.217  Sum_probs=119.5

Q ss_pred             ccCCCcceEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeC
Q psy6984          60 LKGHSHFISDIVLSSDGNYALSGSWD---KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNT  135 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~  135 (380)
                      +..+...+...+|+|||+.|+..+.+   ..|++||+.+++... +....+.+...+|+|||+.++ +.+.++...+|..
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            44566778899999999999877643   359999998886543 333345567889999999886 5677887777754


Q ss_pred             --CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC--CCceeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984         136 --LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL--TNCKLKINHSGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       136 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                        ..+. ...+. .+........|+|+++. +++++..++...+|.+  .+...... ..+........|+|+|++++..
T Consensus       270 d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        270 NADGSG-LRRLT-QSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             ECCCCC-cEECC-CCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEE
Confidence              3222 22222 23333456789998764 3334434455566654  44332221 1122233457899999999877


Q ss_pred             cCCC---cEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984         212 GKDM---NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       212 ~~d~---~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      +.++   .|.+||+.+++.. .+..........|+|++....+
T Consensus       346 s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~  387 (427)
T PRK02889        346 SRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILY  387 (427)
T ss_pred             EccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEE
Confidence            6554   6999999887643 3333334467789999876544

>KOG1334|consensus

Probab=99.58  E-value=5.7e-14  Score=119.39  Aligned_cols=272  Identities=21%  Similarity=0.290  Sum_probs=183.4

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-cccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEe
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd  134 (380)
                      +.+..|.+.|+.+.|+..|..|++|+.|..|.+||+..++....+ .+|...|..-+|-|  +.+.+++.+.||.+++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            356789999999999999999999999999999999988777666 47888998888977  456789999999999876


Q ss_pred             CCC-cc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE---eeeCCcc---ceEEEEEcCCCC
Q psy6984         135 TLA-HC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI---NHSGHTG---YLNTVTVSPDGS  206 (380)
Q Consensus       135 ~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~---~i~~~~~~~~~~  206 (380)
                      +.. +. ........|...|.-++.-|.... .|++++.|+.+.-+|++......   ....+..   ....++.+|...
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            432 22 223444578888999999997665 57899999999999998654322   2222222   578889999655


Q ss_pred             -EEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccce
Q psy6984         207 -LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDV  285 (380)
Q Consensus       207 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  285 (380)
                       .+++|+.|..+++||.+.-.....   ...+..  |.|...                              .....-.|
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~---n~~~~~--f~p~hl------------------------------~~d~~v~I  339 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEEN---NGVLDK--FCPHHL------------------------------VEDDPVNI  339 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccc---cchhhh--cCCccc------------------------------cccCcccc
Confidence             899999999999999765321100   000000  111100                              00111347


Q ss_pred             eEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc-eEEEeeCcccccccCCC--CCCceEEEE-EecCCCEEEE
Q psy6984         286 LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK-KMVEELRPDVVSQSTKA--DPPMCLSLA-WSTDGQTLFA  361 (380)
Q Consensus       286 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~-~s~dg~~l~~  361 (380)
                      ++++|+.++.-|++.-.|-.|++++-.-+..-........ .++.        .-.+.  ....|..+. |-|..+++++
T Consensus       340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k--------~vYKGHrN~~TVKgVNFfGPrsEyVvS  411 (559)
T KOG1334|consen  340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK--------RVYKGHRNSRTVKGVNFFGPRSEYVVS  411 (559)
T ss_pred             eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc--------hhhcccccccccceeeeccCccceEEe
Confidence            8999998887777777888999985321110000000000 0000        00111  123455665 7889999999


Q ss_pred             EeeCCeEEEEEe
Q psy6984         362 GYSDNTIRVWQV  373 (380)
Q Consensus       362 g~~dg~v~iw~~  373 (380)
                      ||..|.|.||+=
T Consensus       412 GSDCGhIFiW~K  423 (559)
T KOG1334|consen  412 GSDCGHIFIWDK  423 (559)
T ss_pred             cCccceEEEEec
Confidence            999999999974

>KOG4497|consensus

Probab=99.57  E-value=1.3e-14  Score=117.50  Aligned_cols=224  Identities=19%  Similarity=0.206  Sum_probs=141.8

Q ss_pred             EEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC
Q psy6984         112 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG  191 (380)
Q Consensus       112 ~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~  191 (380)
                      .+|+|+|+++|+.++- .+.|-|..+-+..+. . .--+.|.-+.|..+.. ..|.....++.|.+|++...+-......
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql-f-~cldki~yieW~ads~-~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQL-F-LCLDKIVYIEWKADSC-HILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHH-H-HHHHHhhheeeeccce-eeeeeeeccceEEEEEeecceeEEEecc
Confidence            5799999999999876 555655432111000 0 0013355566665543 2445567788999999988776666666


Q ss_pred             CccceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC
Q psy6984         192 HTGYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN  270 (380)
Q Consensus       192 ~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (380)
                      ....+..+.|+|||+. +.+..-+-+|.+|.+.+.+....-..+..+..++|+|++++.++.....   .+.-+.+....
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD---Ckdyv~i~~c~  166 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD---CKDYVQISSCK  166 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeeccc---HHHHHHHHhhH
Confidence            6778999999999965 5566779999999998877655544456678899999998865532210   00011111111


Q ss_pred             CceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEE
Q psy6984         271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSL  350 (380)
Q Consensus       271 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (380)
                      .-.+...+.-..-+.+.+-|+|||..|+.         ||..-..++..++-                     +..+..+
T Consensus       167 ~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~---------------------~lG~k~v  216 (447)
T KOG4497|consen  167 AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---------------------GLGLKFV  216 (447)
T ss_pred             HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeee---------------------ccceeEE
Confidence            11111122222235678899999998874         55332222222110                     1135678


Q ss_pred             EEecCCCEEEEEeeCCeEEEEE
Q psy6984         351 AWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       351 ~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      +|+|.+++|+.|+.|+.+||-+
T Consensus       217 ~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  217 EWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             EeccccceEEeeccchhhhhhc
Confidence            9999999999999999999854

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=1.2e-12  Score=118.69  Aligned_cols=238  Identities=18%  Similarity=0.133  Sum_probs=143.1

Q ss_pred             CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeeecccCCCeEEEEEe
Q psy6984          39 NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD---KTLRLWDLAAGKTTRRFEDHTKDVLSVAFS  115 (380)
Q Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  115 (380)
                      ..|.+||.+...      ...+..+...+....|+|||++|+..+.+   ..|++||+.+++... +....+...+.+|+
T Consensus       184 ~~l~i~D~~g~~------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S  256 (433)
T PRK04922        184 YALQVADSDGYN------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS  256 (433)
T ss_pred             EEEEEECCCCCC------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC
Confidence            367888765322      22345666778899999999999987743   469999998876543 33344455678999


Q ss_pred             CCCCEEE-EEeCCC--cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe--EEEEeCCCceeeEeee
Q psy6984         116 VDNRQIV-SSSRDK--TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM--VKVWNLTNCKLKINHS  190 (380)
Q Consensus       116 ~~~~~~~-s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~  190 (380)
                      |||+.++ +.+.++  .|.+||+.++......  .+.......+|+|+++. ++++...++.  |.++|+.+++..... 
T Consensus       257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt--~~~~~~~~~~~spDG~~-l~f~sd~~g~~~iy~~dl~~g~~~~lt-  332 (433)
T PRK04922        257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT--NHFGIDTEPTWAPDGKS-IYFTSDRGGRPQIYRVAASGGSAERLT-  332 (433)
T ss_pred             CCCCEEEEEEeCCCCceEEEEECCCCCeEECc--cCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEee-
Confidence            9999775 455555  5888887665433222  23333456899998753 3333333444  666777665433221 


Q ss_pred             CCccceEEEEEcCCCCEEEEEcCCC---cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         191 GHTGYLNTVTVSPDGSLCASGGKDM---NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       191 ~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      .+.......+|+|+|++++..+.++   .|.+||+.+++.. .+..........|+|++....+....   .....++++
T Consensus       333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~---~g~~~L~~~  408 (433)
T PRK04922        333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATRE---GGRGVLAAV  408 (433)
T ss_pred             cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEec---CCceEEEEE
Confidence            2223345689999999988765432   6899999877654 33333344566899988764432221   123345555


Q ss_pred             EcCCceeeeeeeccccceeEEEEee
Q psy6984         268 PINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      +...+ ....+....+.+...+|+|
T Consensus       409 ~~~g~-~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        409 STDGR-VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ECCCC-ceEEcccCCCCCCCCccCC
Confidence            55432 2222222233444555554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.5e-12  Score=113.95  Aligned_cols=210  Identities=11%  Similarity=0.069  Sum_probs=133.4

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS---RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      ..|.++|....+... +..+...+...+|+|||+.++..+   .+..+.+|++.++.......  .......++|+|+++
T Consensus       179 ~~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCC
Confidence            379999987654433 344567889999999999988654   23478888876654333221  122344689999876


Q ss_pred             CCEEEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC-C--cEEEEECCCCcEEEEEEecCce
Q psy6984         163 NPIIVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD-M--NAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       163 ~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      . ++++.+.++  .|.+||+.+++..... .+...+....|+|||+.|+..+.+ +  .|+++|+..++...........
T Consensus       256 ~-La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~  333 (429)
T PRK03629        256 K-LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN  333 (429)
T ss_pred             E-EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc
Confidence            4 333434344  5889999877654332 334456788999999988776654 3  4555577666543322233345


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      ....|+|++.+..+...   ......++++++.+++... +... .......|+|||+.|+.++.++.
T Consensus       334 ~~~~~SpDG~~Ia~~~~---~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        334 QDADVSSDGKFMVMVSS---NGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             cCEEECCCCCEEEEEEc---cCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence            57889999876443221   1123457778877665432 2221 12346789999999999888765

>KOG1354|consensus

Probab=99.56  E-value=6.1e-13  Score=108.53  Aligned_cols=317  Identities=20%  Similarity=0.358  Sum_probs=192.8

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC-CcccccccccCC------------CcceEEEEEccCCC--EEE
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT-NYGVPQKRLKGH------------SHFISDIVLSSDGN--YAL   80 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~-~~~~~~~~~~~h------------~~~v~~~~~~~~~~--~l~   80 (380)
                      ...|.++.+... +++|+||..+|.|.++.-..... .+.. ...++.|            ...|+.+.|.++++  .++
T Consensus        25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~-~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNF-QTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceee-eeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            356888999876 89999999999999997543221 1111 1123333            23567788887654  677


Q ss_pred             EEeCCCcEEEEECCCCcee-----------------------------------eee-cccCCCeEEEEEeCCCCEEEEE
Q psy6984          81 SGSWDKTLRLWDLAAGKTT-----------------------------------RRF-EDHTKDVLSVAFSVDNRQIVSS  124 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~~-----------------------------------~~~-~~h~~~v~~~~~~~~~~~~~s~  124 (380)
                      ....|.+|++|-+......                                   +.+ ..|..-|.+++++.|.+.++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            8888999999987532110                                   111 2577778999999999988876


Q ss_pred             eCCCcEEEEeCCC-cceEEEeeCC------CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee------E----
Q psy6984         125 SRDKTIKLWNTLA-HCKFTIVEDG------HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK------I----  187 (380)
Q Consensus       125 ~~d~~v~iwd~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------~----  187 (380)
                       .|=.|.+|.+.- ...+.++...      -+.-|++..|+|...+ +|+-.++.|+|++-|++...+.      .    
T Consensus       183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn-~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN-VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc-EEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence             566799998642 2333332211      1234778899997655 6666777999999999842211      0    


Q ss_pred             ------eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC-CCCcEEEEEEecCceE-EEEeecCcccceeeeeeeeec
Q psy6984         188 ------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL-NDGKHLHTLVHNDIIT-ALCFSPNRSFQKIKLDISRTL  259 (380)
Q Consensus       188 ------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~  259 (380)
                            .+.+-...|..+.|+++|+|+++-.. .+|++||+ ...+++.+....+... .++            +    +
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc------------~----l  323 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC------------S----L  323 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH------------H----H
Confidence                  11122356788999999999987765 58999998 4455554443211100 000            0    0


Q ss_pred             cccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc-eEEE--eeCcccc
Q psy6984         260 QKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK-KMVE--ELRPDVV  336 (380)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~--~~~~~~~  336 (380)
                      -..+ .++                +-..++|+-++.+++||+....+++++...+.+..+-..... .+..  -.++..+
T Consensus       324 YEnD-~If----------------dKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V  386 (433)
T KOG1354|consen  324 YEND-AIF----------------DKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLV  386 (433)
T ss_pred             hhcc-chh----------------heeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceee
Confidence            0000 000                123578999999999999999999999665554433221111 1100  0111111


Q ss_pred             ccc-----------CCCCCCceEEEEEecCCCEEEEEeeCCeEEEE
Q psy6984         337 SQS-----------TKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW  371 (380)
Q Consensus       337 ~~~-----------~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw  371 (380)
                      ...           .-.....++..+|+|..+.+|.+..++ +.||
T Consensus       387 ~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  387 SSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             ecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            100           001122356679999999998775444 5554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.56  E-value=3.2e-11  Score=105.91  Aligned_cols=301  Identities=13%  Similarity=0.105  Sum_probs=171.3

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      +.++.++..++......-..+.++|+ +.+++.++.||.|.++|+......     .+++. ......+++++||+++++
T Consensus        22 D~~t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v-----~~i~~-G~~~~~i~~s~DG~~~~v   94 (369)
T PF02239_consen   22 DGATNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVV-----ATIKV-GGNPRGIAVSPDGKYVYV   94 (369)
T ss_dssp             ETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEE-----EEEE--SSEEEEEEE--TTTEEEE
T ss_pred             ECCCCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEE-----EEEec-CCCcceEEEcCCCCEEEE
Confidence            44566777788754444444668887 678888899999999998764422     22222 223578999999999987


Q ss_pred             Ee-CCCcEEEEECCCCceeeeeccc-------CCCeEEEEEeCCCCEEEEEeCC-CcEEEEeCCCcceEEEeeCCCcCcE
Q psy6984          82 GS-WDKTLRLWDLAAGKTTRRFEDH-------TKDVLSVAFSVDNRQIVSSSRD-KTIKLWNTLAHCKFTIVEDGHSDWV  152 (380)
Q Consensus        82 ~~-~d~~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~v  152 (380)
                      +. ..+.+.++|..+.+.++.+...       ...+..+..+|....++..-.| +.|-+-|..................
T Consensus        95 ~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~  174 (369)
T PF02239_consen   95 ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP  174 (369)
T ss_dssp             EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred             EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence            75 6799999999999888876532       2356778888888877666665 6666656443322221111223446


Q ss_pred             EEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee----CCccceEEEEEcCC----------CCEEEEEcCCCcEE
Q psy6984         153 SCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS----GHTGYLNTVTVSPD----------GSLCASGGKDMNAM  218 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~----------~~~l~~~~~d~~i~  218 (380)
                      ....|.|+++. ++++...+..|-++|.++.++.....    .|......+ .+|.          +...++.-....+.
T Consensus       175 ~D~~~dpdgry-~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~  252 (369)
T PF02239_consen  175 HDGGFDPDGRY-FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVS  252 (369)
T ss_dssp             EEEEE-TTSSE-EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred             cccccCcccce-eeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccc
Confidence            67889987652 34445566799999999877655432    233333322 2232          22222222223455


Q ss_pred             EEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc-ccceeEEEEeecCCEE
Q psy6984         219 LWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL-FRDVLSVAFSVDNRQI  297 (380)
Q Consensus       219 i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l  297 (380)
                      +||..+.+.+..+......--+..+|++.+........  .....+.+++..+.+....+... ...+.-+.|+++|+++
T Consensus       253 v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~--~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v  330 (369)
T PF02239_consen  253 VHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLN--PDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV  330 (369)
T ss_dssp             -STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT---SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred             cchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCC--CCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence            68888888888887766667777789988755432111  22567888988877655444322 2247889999999976


Q ss_pred             EEeeC--CCcEEEEeccc
Q psy6984         298 VSSSR--DKTIKLWNTLA  313 (380)
Q Consensus       298 ~s~~~--dg~v~iw~~~~  313 (380)
                      ..+..  ++.|.++|..+
T Consensus       331 ~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  331 WVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             EEEEE--TTEEEEEETTT
T ss_pred             EEEEecCCCEEEEEECCC
Confidence            54433  33688887543

...

>KOG1272|consensus

Probab=99.55  E-value=1.5e-14  Score=122.14  Aligned_cols=264  Identities=15%  Similarity=0.216  Sum_probs=184.3

Q ss_pred             EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCcee
Q psy6984          20 TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTT   99 (380)
Q Consensus        20 ~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~   99 (380)
                      ..+.+..+ +..|+.|+.-|.+-.+|.......+.+      .-...|.++.|-.+-+++|++-. ..++||| ..|..+
T Consensus       133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei------~v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtEl  203 (545)
T KOG1272|consen  133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEI------NVMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTEL  203 (545)
T ss_pred             eeeeecCC-ccEEEecCCccceeeeecccceeeeee------ehhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEE
Confidence            45677765 678888999999999886543222111      12345778888877777776654 6899999 456666


Q ss_pred             eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       100 ~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                      ..+..| ..|..+.|-|-.-+|++++..|.++--|+..+.....+..+ ...+..++.+|  -+.++-+|..+|+|.+|.
T Consensus       204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP--~NaVih~GhsnGtVSlWS  279 (545)
T KOG1272|consen  204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNP--YNAVIHLGHSNGTVSLWS  279 (545)
T ss_pred             eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCC--ccceEEEcCCCceEEecC
Confidence            666655 46888999998888999999999998887665443332221 22344455555  455778899999999999


Q ss_pred             CCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeec
Q psy6984         180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTL  259 (380)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  259 (380)
                      ....+....+..|.++|.+++++++|+|++|.+.|..++|||++....+++...+-+...+++|..+.....        
T Consensus       280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~--------  351 (545)
T KOG1272|consen  280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALS--------  351 (545)
T ss_pred             CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeee--------
Confidence            998888888889999999999999999999999999999999999887777766667777777766543211        


Q ss_pred             cccceEEEEcCC---ceeeeeeecc--ccceeEEEEeecCCEEEEeeCCC
Q psy6984         260 QKSNLILYPINH---GKMETPFFSL--FRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       260 ~~~~~~~~~~~~---~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                      ....+.+|.-..   +....+...|  ...|.++.|.|-...|-.|-..|
T Consensus       352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            122333443211   1222233333  24688888988777666554444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=1.8e-12  Score=103.35  Aligned_cols=153  Identities=20%  Similarity=0.328  Sum_probs=102.7

Q ss_pred             EEEEccCCCEEEEEeC----------CCcEEEEECCC-Cceeeeecc-cCCCeEEEEEeCCCCEEEE--EeCCCcEEEEe
Q psy6984          69 DIVLSSDGNYALSGSW----------DKTLRLWDLAA-GKTTRRFED-HTKDVLSVAFSVDNRQIVS--SSRDKTIKLWN  134 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~----------d~~i~vwd~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~~s--~~~d~~v~iwd  134 (380)
                      .+.|+++|++|+.-..          -+...+|-++. +.....+.- ..++|.+++|+|+|+.+|.  |..++.+.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            4668888887764332          12344444422 233333332 3457999999999998764  44677999999


Q ss_pred             CCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC---CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984         135 TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW---DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                      .... .....   ....++.+.|+|+++  +++.++.   .|.|.+||.++.+.+.... | ..+..++|+|+|++|+++
T Consensus        90 ~~~~-~i~~~---~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   90 VKGK-KIFSF---GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATA  161 (194)
T ss_pred             Cccc-EeEee---cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEE
Confidence            8632 22222   234578899999876  5665543   4679999999777654433 3 347899999999999988


Q ss_pred             cC------CCcEEEEECCCCcEEEE
Q psy6984         212 GK------DMNAMLWDLNDGKHLHT  230 (380)
Q Consensus       212 ~~------d~~i~i~d~~~~~~~~~  230 (380)
                      ..      |..++||+.. |+.+..
T Consensus       162 ~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  162 TTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EeccceeccccEEEEEec-CeEeEe
Confidence            64      7888999984 555544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=4.6e-12  Score=115.09  Aligned_cols=222  Identities=16%  Similarity=0.141  Sum_probs=139.0

Q ss_pred             eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC---CCcEEEEECCCCceeeeecccCCCeEEEEEeC
Q psy6984          40 TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW---DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV  116 (380)
Q Consensus        40 ~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  116 (380)
                      .|.+||.+...      ...+..|...+....|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+...+|+|
T Consensus       183 ~l~~~d~dg~~------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        183 RLAIMDQDGAN------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP  255 (435)
T ss_pred             EEEEECCCCCC------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC
Confidence            66677654322      2345667778999999999999887764   468999999887653 3445666778899999


Q ss_pred             CCCEEE-EEeCCCc--EEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC--CeEEEEeCCCceeeEeeeC
Q psy6984         117 DNRQIV-SSSRDKT--IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD--RMVKVWNLTNCKLKINHSG  191 (380)
Q Consensus       117 ~~~~~~-s~~~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~  191 (380)
                      ||+.++ +.+.++.  |.+||+.++......  .+........|+|+++. ++++...+  ..|.++|+...+.... ..
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt--~~~~~~~~~~~spDG~~-i~f~s~~~g~~~Iy~~d~~g~~~~~l-t~  331 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT--DSPAIDTSPSYSPDGSQ-IVFESDRSGSPQLYVMNADGSNPRRI-SF  331 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCceEEcc--CCCCccCceeEcCCCCE-EEEEECCCCCCeEEEEECCCCCeEEe-ec
Confidence            999876 5566665  556676655433322  23334567899998764 33333233  3688888876554332 22


Q ss_pred             CccceEEEEEcCCCCEEEEEcCC---CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEE
Q psy6984         192 HTGYLNTVTVSPDGSLCASGGKD---MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYP  268 (380)
Q Consensus       192 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (380)
                      +...+....|+|+|+.++..+.+   ..|.+||+..+. ...+.....+....|+|++....+............+++++
T Consensus       332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d  410 (435)
T PRK05137        332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD  410 (435)
T ss_pred             CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence            33445668899999998876543   468888875544 33333333466788999987544322111000013466666


Q ss_pred             cCCce
Q psy6984         269 INHGK  273 (380)
Q Consensus       269 ~~~~~  273 (380)
                      +..++
T Consensus       411 l~g~~  415 (435)
T PRK05137        411 LTGRN  415 (435)
T ss_pred             CCCCc
Confidence            65443

>KOG2111|consensus

Probab=99.54  E-value=1.6e-11  Score=99.30  Aligned_cols=237  Identities=15%  Similarity=0.191  Sum_probs=141.3

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCC------CcEEEEeCCCcce
Q psy6984          68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRD------KTIKLWNTLAHCK  140 (380)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d------~~v~iwd~~~~~~  140 (380)
                      ..++|+.|...+++|..+| .+||+.+.-+....-..+.+.+.-+.+---.+++| .|+.+      +.+.|||-.....
T Consensus         9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~   87 (346)
T KOG2111|consen    9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC   87 (346)
T ss_pred             eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence            4589999999888888765 89999876333222122222211111112233444 44443      5899999655444


Q ss_pred             EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCC--ccceEEEEEcCCCCEEEE-EcCCCc
Q psy6984         141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGH--TGYLNTVTVSPDGSLCAS-GGKDMN  216 (380)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~--~~~i~~~~~~~~~~~l~~-~~~d~~  216 (380)
                      ...+  .....|..+.+.++.    ++.. .++.|.+|...+ .+....+...  .....++.-..+..+||. |-.-|.
T Consensus        88 i~el--~f~~~I~~V~l~r~r----iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   88 IIEL--SFNSEIKAVKLRRDR----IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             EEEE--EeccceeeEEEcCCe----EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            3332  345679999998752    3332 367999999874 3333222111  112222222222223332 333455


Q ss_pred             EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE
Q psy6984         217 AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ  296 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  296 (380)
                      |++-|+...+.-                                             .......|..+|.+++.+.+|..
T Consensus       161 vQi~dL~~~~~~---------------------------------------------~p~~I~AH~s~Iacv~Ln~~Gt~  195 (346)
T KOG2111|consen  161 VQIVDLASTKPN---------------------------------------------APSIINAHDSDIACVALNLQGTL  195 (346)
T ss_pred             EEEEEhhhcCcC---------------------------------------------CceEEEcccCceeEEEEcCCccE
Confidence            555554322110                                             01122356678889999999999


Q ss_pred             EEEeeCCCc-EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         297 IVSSSRDKT-IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       297 l~s~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +||+|..|+ |||||..++           ..+.+++.+       .....+.+++|||++.+||++|.-|+|.|+.+.-
T Consensus       196 vATaStkGTLIRIFdt~~g-----------~~l~E~RRG-------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  196 VATASTKGTLIRIFDTEDG-----------TLLQELRRG-------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEeccCcEEEEEEEcCCC-----------cEeeeeecC-------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999986 788876544           334444432       2345688999999999999999999999998864

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=9.7e-12  Score=112.97  Aligned_cols=207  Identities=14%  Similarity=0.109  Sum_probs=135.5

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      ..|+++|... ...+.+..|...+...+|+|||+.|+..+.   +..|.+||+.++......  .+...+...+|+|+++
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCC
Confidence            4788999854 444556677788999999999999887663   468999998766543332  2344566789999876


Q ss_pred             CCEEEEEeCCCe--EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC-C--CcEEEEECCCCcEEEEEEecCce
Q psy6984         163 NPIIVSAGWDRM--VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK-D--MNAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       163 ~~~l~s~~~d~~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      . ++++.+.++.  |.+||+.+.+.. .+..+........|+|||+.++..+. +  ..|+++|+..++...........
T Consensus       259 ~-la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        259 K-VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             E-EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            4 4455555554  777788876543 33444555667899999998887664 3  36888898766544333334456


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      ....|+|++....+...   ......+.+++...+... .+.. ...+..+.|+|||+.|+..+.
T Consensus       337 ~~~~~SpdG~~ia~~~~---~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQ---GGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             cCeEECCCCCEEEEEEc---CCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEEc
Confidence            67789999876543221   112245667776544322 2211 224567899999999876554

>KOG3881|consensus

Probab=99.53  E-value=4.9e-12  Score=104.96  Aligned_cols=248  Identities=11%  Similarity=0.173  Sum_probs=161.9

Q ss_pred             cceEEEEeCCCC-CCeEEEeeCCCeEEEeecCCCCCCccc-ccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          17 GWVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGV-PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        17 ~~v~~i~~~~~~-~~~l~t~~~dg~v~vw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      ..|+.+.|..+. .+.+..++.|..+..+........... ...........|..+...  ...|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence            456666666442 234555555656555544322111100 001122333344444432  3478888999999999987


Q ss_pred             CCc----eeeeecccCCCeEEEEEeCCCC-EEEEEeCC--CcEEEEeCCCcceEEEeeCC--------CcCcEEEEEEcc
Q psy6984          95 AGK----TTRRFEDHTKDVLSVAFSVDNR-QIVSSSRD--KTIKLWNTLAHCKFTIVEDG--------HSDWVSCVRFSP  159 (380)
Q Consensus        95 ~~~----~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d--~~v~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~  159 (380)
                      .+.    .+..+..+ ..+..+.-++... .+|+|+..  ..+++||+...........-        -.-|+..+.|.+
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            432    23333333 3455555555444 45668888  88999998765332211111        123677899988


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCcee-eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKL-KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      ......|+++..-+.+|+||.+.++. +..+.-...+++++...|+|+.+.+|..-+.+..||++.++.....       
T Consensus       213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-------  285 (412)
T KOG3881|consen  213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-------  285 (412)
T ss_pred             CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc-------
Confidence            75566899999999999999987543 3444445678999999999999999999999999999877643211       


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                                                             +.+..+.+.++..+|.+++|++||-|+.|||+|+.+
T Consensus       286 ---------------------------------------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  286 ---------------------------------------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             ---------------------------------------cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence                                                   112345677888999999999999999999999765

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=6.1e-12  Score=113.63  Aligned_cols=219  Identities=13%  Similarity=0.137  Sum_probs=136.1

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEee---CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCC-
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCS---RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDK-   86 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~---~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~-   86 (380)
                      +..+.+.+.+..|+|+ ++.|+..+   .+..+.+|++......   ....+.+   .+..+.|+|||++|+.. +.+| 
T Consensus       194 lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~---~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~  266 (429)
T PRK03629        194 VHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVR---QVASFPR---HNGAPAFSPDGSKLAFALSKTGS  266 (429)
T ss_pred             eecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeE---EccCCCC---CcCCeEECCCCCEEEEEEcCCCC
Confidence            3445668889999998 56666543   3457888887543211   1112233   34568999999988865 4444 


Q ss_pred             -cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CCcEEEE--eCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          87 -TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKLW--NTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        87 -~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                       .|++||+.+++..+. ..+...+....|+|||+.++..+. ++..++|  |+.++.......  ......+..|+|+++
T Consensus       267 ~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--~~~~~~~~~~SpDG~  343 (429)
T PRK03629        267 LNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--EGSQNQDADVSSDGK  343 (429)
T ss_pred             cEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCC
Confidence             599999988766543 334456788999999998887665 3455566  444433322222  222345688999876


Q ss_pred             CCEEEEEeCC--CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCc---EEEEECCCCcEEEEE-EecCc
Q psy6984         163 NPIIVSAGWD--RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMN---AMLWDLNDGKHLHTL-VHNDI  236 (380)
Q Consensus       163 ~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---i~i~d~~~~~~~~~~-~~~~~  236 (380)
                      . ++++...+  ..|.+||+.+++.......  .......|+|||+.++.++.++.   +.++++. ++....+ .++..
T Consensus       344 ~-Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~  419 (429)
T PRK03629        344 F-MVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQ  419 (429)
T ss_pred             E-EEEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCC
Confidence            4 23333322  4588899987654332222  12345789999999998887764   6677774 4333333 34555


Q ss_pred             eEEEEeec
Q psy6984         237 ITALCFSP  244 (380)
Q Consensus       237 i~~~~~~~  244 (380)
                      +...+|+|
T Consensus       420 ~~~p~Wsp  427 (429)
T PRK03629        420 VKFPAWSP  427 (429)
T ss_pred             cCCcccCC
Confidence            66677765

>KOG2394|consensus

Probab=99.53  E-value=4.5e-13  Score=115.34  Aligned_cols=136  Identities=19%  Similarity=0.315  Sum_probs=105.9

Q ss_pred             CcceEEEEEccCC-CEEEEEeCCCcEEEEECCCC----------------------------ceeeeecccCCCeEEEEE
Q psy6984          64 SHFISDIVLSSDG-NYALSGSWDKTLRLWDLAAG----------------------------KTTRRFEDHTKDVLSVAF  114 (380)
Q Consensus        64 ~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~----------------------------~~~~~~~~h~~~v~~~~~  114 (380)
                      +..|+|+.|-|.+ ..++.+-.+|.+++||..-.                            .++..+..-.+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            4679999998854 56677788999999976310                            111112223446888999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCcc
Q psy6984         115 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTG  194 (380)
Q Consensus       115 ~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  194 (380)
                      +|||++||+.+.||.+||||..+...... .........|++|+|+++  ++++|+.|..|.+|.+...+.+..-.+|..
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~-mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqGHkS  375 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGV-MKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQGHKS  375 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHH-HHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecccccc
Confidence            99999999999999999999765433222 123345678999999876  899999999999999999998888889999


Q ss_pred             ceEEEEEc
Q psy6984         195 YLNTVTVS  202 (380)
Q Consensus       195 ~i~~~~~~  202 (380)
                      +|+.++|+
T Consensus       376 WVs~VaFD  383 (636)
T KOG2394|consen  376 WVSVVAFD  383 (636)
T ss_pred             ceeeEeec
Confidence            99999998

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=5.5e-12  Score=114.39  Aligned_cols=220  Identities=15%  Similarity=0.162  Sum_probs=135.3

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeC---CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCC
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSR---DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDK   86 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~   86 (380)
                      .+..|...+.+..|+|+ ++.|+.++.   +..|.+|++.....      ..+..+........|+|||+.|+ +.+.++
T Consensus       198 ~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        198 TILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQR------ELVASFRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             EeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCE------EEeccCCCCccCceECCCCCEEEEEEeCCC
Confidence            45566778889999998 567776663   34689998864321      11222333345789999999876 445555


Q ss_pred             --cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe-CCCc--EEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          87 --TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKT--IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        87 --~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                        .|++||+.+++..+ +..+.......+|+|||+.++..+ .++.  +.++++.+.........+  .....++|+|++
T Consensus       271 ~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG  347 (433)
T PRK04922        271 NPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG--NYNARASVSPDG  347 (433)
T ss_pred             CceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC--CCccCEEECCCC
Confidence              59999998876543 445555556789999999888766 3455  445555444332222222  234468999987


Q ss_pred             CCCEEEEEeCC--CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC---CcEEEEECCCCcEEEEEE-ecC
Q psy6984         162 QNPIIVSAGWD--RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD---MNAMLWDLNDGKHLHTLV-HND  235 (380)
Q Consensus       162 ~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~-~~~  235 (380)
                      +. ++++...+  ..|.+||+.+.+.....  +........|+|||+.++..+.+   ..|.++++..+ ....+. ...
T Consensus       348 ~~-Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g  423 (433)
T PRK04922        348 KK-IAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADG  423 (433)
T ss_pred             CE-EEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCC
Confidence            64 22332222  36999999876654322  22234457899999987766553   46777787543 333332 233


Q ss_pred             ceEEEEeec
Q psy6984         236 IITALCFSP  244 (380)
Q Consensus       236 ~i~~~~~~~  244 (380)
                      .+...+|+|
T Consensus       424 ~~~~p~wsp  432 (433)
T PRK04922        424 EVREPAWSP  432 (433)
T ss_pred             CCCCCccCC
Confidence            445555554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=3.3e-12  Score=101.87  Aligned_cols=159  Identities=17%  Similarity=0.261  Sum_probs=109.1

Q ss_pred             EEEEEeCCCCEEEEEeC---C-------CcEEEEeCCC-cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984         110 LSVAFSVDNRQIVSSSR---D-------KTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW  178 (380)
Q Consensus       110 ~~~~~~~~~~~~~s~~~---d-------~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw  178 (380)
                      ..+.|+|+|+.|+.-..   |       +...+|.+.. ......+.......|.+++|+|+++...++.|..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45778899987764332   1       2344444322 12222232233456999999999876445566678899999


Q ss_pred             eCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC---CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeee
Q psy6984         179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD---MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDI  255 (380)
Q Consensus       179 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  255 (380)
                      |++ .+....+  +...++.+.|+|+|+++++++.+   |.+.+||.++.+.+....+.. +..++|+|++.+.......
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEec
Confidence            997 4444443  34577899999999999998754   679999999888888777654 6899999999987655443


Q ss_pred             eeeccccceEEEEcCCc
Q psy6984         256 SRTLQKSNLILYPINHG  272 (380)
Q Consensus       256 ~~~~~~~~~~~~~~~~~  272 (380)
                      .+...+..+.+|.....
T Consensus       165 ~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             cceeccccEEEEEecCe
Confidence            34445677777877533

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.51  E-value=7.2e-11  Score=101.44  Aligned_cols=322  Identities=14%  Similarity=0.167  Sum_probs=193.3

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC--------
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK--------   86 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--------   86 (380)
                      -+-++....++|. +.+|++.... -|.+|.-+..+.     .  .+-....|..+.|+|.++||.+-+...        
T Consensus        31 ~~~p~~~~~~SP~-G~~l~~~~~~-~V~~~~g~~~~~-----l--~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~  101 (561)
T COG5354          31 ENWPVAYVSESPL-GTYLFSEHAA-GVECWGGPSKAK-----L--VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEI  101 (561)
T ss_pred             cCcchhheeecCc-chheehhhcc-ceEEccccchhh-----e--eeeecCCceecccCcccceeeeeccCCccChhhcc
Confidence            4457888999998 6788876654 688997543221     1  122234688999999999999866543        


Q ss_pred             -------cEEEEECCCCceeeeecccCCC--eE-EEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEE
Q psy6984          87 -------TLRLWDLAAGKTTRRFEDHTKD--VL-SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR  156 (380)
Q Consensus        87 -------~i~vwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  156 (380)
                             .+++||..++..+..+..-..+  .. -+.|+.+..++|=- -...+.|+++...-...-........|..-.
T Consensus       102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFs  180 (561)
T COG5354         102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFS  180 (561)
T ss_pred             CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEE
Confidence                   4999999999998887665444  33 57788888877644 2335888885211111111111124466777


Q ss_pred             EccCCCCCEEE-----EEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEc-----------CCCcEEEE
Q psy6984         157 FSPNHQNPIIV-----SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG-----------KDMNAMLW  220 (380)
Q Consensus       157 ~~~~~~~~~l~-----s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------~d~~i~i~  220 (380)
                      ++|.+....|+     ..+....+++|.+..........--...-..+-|++.|++++.--           ....++++
T Consensus       181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~  260 (561)
T COG5354         181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL  260 (561)
T ss_pred             ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence            88875554444     256788999999976554433222222334577888888765321           12467888


Q ss_pred             ECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe
Q psy6984         221 DLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       221 d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  300 (380)
                      ++......-.....++|...+|.|.+.--.+..    +.....+.++++... +  .++.....-..+.|||.+++++.+
T Consensus       261 ~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~----g~~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fsp~~r~il~a  333 (561)
T COG5354         261 RITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS----GYMPASVSVFDLRGN-L--RFYFPEQKRNTIFFSPHERYILFA  333 (561)
T ss_pred             eecccccceeccccccceeeeecccCCceeEEe----cccccceeecccccc-e--EEecCCcccccccccCcccEEEEe
Confidence            876332222224578999999999764322111    111222333333322 1  112222233457899999999987


Q ss_pred             eCC---CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe------eCCeEEEE
Q psy6984         301 SRD---KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY------SDNTIRVW  371 (380)
Q Consensus       301 ~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~------~dg~v~iw  371 (380)
                      +-|   |.|-+|+.....+.          +..+.           ...+.-+.|||||+++.+..      .|+.|.||
T Consensus       334 gF~nl~gni~i~~~~~rf~~----------~~~~~-----------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~  392 (561)
T COG5354         334 GFDNLQGNIEIFDPAGRFKV----------AGAFN-----------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLW  392 (561)
T ss_pred             cCCccccceEEeccCCceEE----------EEEee-----------cCCceEeeccCCceEEEecCCCcccccCcceEEE
Confidence            765   57888875433221          11110           11123467999999987542      37889999


Q ss_pred             Eee
Q psy6984         372 QVS  374 (380)
Q Consensus       372 ~~~  374 (380)
                      ++.
T Consensus       393 ~v~  395 (561)
T COG5354         393 DVY  395 (561)
T ss_pred             Eec
Confidence            985

>KOG2139|consensus

Probab=99.50  E-value=9.6e-12  Score=102.32  Aligned_cols=181  Identities=17%  Similarity=0.267  Sum_probs=124.2

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCC-------
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLA-------  137 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~-------  137 (380)
                      .+..++|++--..++++..|-.|++||-+......--......|+|++|-|.+ ..++.|+..| |.+|....       
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~  178 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN  178 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence            35678898876778899999999999977633332223345679999999955 4677777765 88996321       


Q ss_pred             ------cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC-CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEE
Q psy6984         138 ------HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW-DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       138 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  210 (380)
                            .........+| ..|++++|++++.  .+++++. |..|.+||..++...-...-..+.+.-+.|||||.+|++
T Consensus       179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                  11111223344 6799999999865  4666544 678999999876544333333556888999999999999


Q ss_pred             EcCCCcEEEEECCC-CcEEEEEEecCceEEEEeecCcccce
Q psy6984         211 GGKDMNAMLWDLND-GKHLHTLVHNDIITALCFSPNRSFQK  250 (380)
Q Consensus       211 ~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~  250 (380)
                      +.-|+..++|+... -...........+...+|+|++++..
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence            99999999995432 22222233444677777777766543

>KOG1272|consensus

Probab=99.49  E-value=1.5e-13  Score=116.24  Aligned_cols=195  Identities=17%  Similarity=0.241  Sum_probs=154.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      ..-+.+.++.+|++|+.|+..|.|..+|+.+.++..++.. ...|.++.|-.+.+++|.+ ..+.+.|||-. +..+..+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHCl  206 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCL  206 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeeh
Confidence            3456789999999999999999999999999988877643 4578899998887777766 55679999843 3333333


Q ss_pred             eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         145 EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      .  ....|..+.|.|.+  .+|++++..|.++.-|+..++++..+....+.+..+.-+|-+-.+-+|...|.|.+|....
T Consensus       207 k--~~~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  207 K--RHIRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             h--hcCchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence            2  22347778888854  4678889999999999999998887777778888899999888999999999999997655


Q ss_pred             CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                      .+++-                                               .+.-|.++|.++++.++|+|++|.+.|+
T Consensus       283 kePLv-----------------------------------------------KiLcH~g~V~siAv~~~G~YMaTtG~Dr  315 (545)
T KOG1272|consen  283 KEPLV-----------------------------------------------KILCHRGPVSSIAVDRGGRYMATTGLDR  315 (545)
T ss_pred             cchHH-----------------------------------------------HHHhcCCCcceEEECCCCcEEeeccccc
Confidence            44321                                               1223456788899999999999999999


Q ss_pred             cEEEEeccc
Q psy6984         305 TIKLWNTLA  313 (380)
Q Consensus       305 ~v~iw~~~~  313 (380)
                      .++|||+..
T Consensus       316 ~~kIWDlR~  324 (545)
T KOG1272|consen  316 KVKIWDLRN  324 (545)
T ss_pred             ceeEeeecc
Confidence            999998743

>KOG1064|consensus

Probab=99.49  E-value=1.9e-13  Score=132.43  Aligned_cols=198  Identities=19%  Similarity=0.324  Sum_probs=154.0

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      |-..|.++.-||. ..+.+||+.||.|++|.-.......   ..+..|. ..|+.+.|+.+|+.+..+..||.+.+|...
T Consensus      2207 ~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~---~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVV---CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             ccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEE---EeeccCc-chhhhhhhcccCCceeeeccCCceeecccC
Confidence            3467888989987 4588999999999999876543221   2223344 678999999999999999999999999987


Q ss_pred             CCceeeeecccCCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS---RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                       .+.....+.|.....++.|-.  ..+++++   .++.+.+||.........+...|...++++++.|..+  +|++||.
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q--llisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ--LLISGGR 2356 (2439)
T ss_pred             -CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce--EEEecCC
Confidence             566677788999988888864  5666654   5679999997654444445578999999999999755  8999999


Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      +|.|++||++..+++..++.         ++ ...++++|+..|.++||++.....++.+.
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            99999999987665433221         34 56699999999999999998776665553

>KOG2315|consensus

Probab=99.48  E-value=1.3e-10  Score=101.02  Aligned_cols=316  Identities=11%  Similarity=0.191  Sum_probs=182.1

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-----eC-----CCc
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-----SW-----DKT   87 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~~-----d~~   87 (380)
                      ..+..++++. +. ++..+.+..++|++.......    . +..  ...+.++.|+|-|++|.+-     ..     .-.
T Consensus        36 ~~~v~~~S~~-G~-lfA~~~~~~v~i~~~~~~~~~----l-t~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn  106 (566)
T KOG2315|consen   36 PCNVFAYSNN-GR-LFAYSDNQVVKVFEIATLKVV----L-CVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN  106 (566)
T ss_pred             cceeEEEcCC-Cc-EEEEEcCCeEEEEEccCCcEE----E-Eec--cceeeeeeecccccccccccccccccCCCCCCCc
Confidence            3455666665 44 445556679999986543211    1 111  1157899999999998752     11     246


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      +.+|++.++.....+......-.+..|++|..+.| --..+.+.+|+........  ..-|...|....++|.+....++
T Consensus       107 ~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~--~kl~~~~i~~f~lSpgp~~~~vA  183 (566)
T KOG2315|consen  107 VLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ--HKLSVSGITMLSLSPGPEPPFVA  183 (566)
T ss_pred             eeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcccee--eeeeccceeeEEecCCCCCceEE
Confidence            78999998655544433222225788988876543 2233568999876532222  22356678899999986665665


Q ss_pred             E-----EeCCCeEEEEeCCCceeeE--eee-CCccceEEEEEcCCCCEE-E--EEcCC---------CcEEEEECCCCcE
Q psy6984         168 S-----AGWDRMVKVWNLTNCKLKI--NHS-GHTGYLNTVTVSPDGSLC-A--SGGKD---------MNAMLWDLNDGKH  227 (380)
Q Consensus       168 s-----~~~d~~v~iwd~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~l-~--~~~~d---------~~i~i~d~~~~~~  227 (380)
                      +     .|.-..|++|.........  ..+ -....--.+.|++.|.-| +  +..-|         ..+++.++...+.
T Consensus       184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~  263 (566)
T KOG2315|consen  184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV  263 (566)
T ss_pred             EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence            3     4556789999876211100  000 011112335677766532 2  22222         4677777773344


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC---C
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD---K  304 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g  304 (380)
                      .-.+.-..+|.++.|+|++.--.+...    ..-..+.+|+.+.. .+..+  ..++-.++-|+|.|++++-+|.+   |
T Consensus       264 ~V~L~k~GPVhdv~W~~s~~EF~VvyG----fMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G  336 (566)
T KOG2315|consen  264 SVPLLKEGPVHDVTWSPSGREFAVVYG----FMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPG  336 (566)
T ss_pred             EEecCCCCCceEEEECCCCCEEEEEEe----cccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCC
Confidence            444456889999999998742221111    00112233443321 11111  12344578899999999888764   7


Q ss_pred             cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee------CCeEEEEEee
Q psy6984         305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS------DNTIRVWQVS  374 (380)
Q Consensus       305 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~------dg~v~iw~~~  374 (380)
                      .|-+||......+.-+                      .....+-+.|+|||++++|+..      |+.++||+++
T Consensus       337 ~mEvwDv~n~K~i~~~----------------------~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  337 DMEVWDVPNRKLIAKF----------------------KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ceEEEeccchhhcccc----------------------ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            8999986442222111                      1112345789999999987652      7889999874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.4e-11  Score=111.48  Aligned_cols=219  Identities=14%  Similarity=0.120  Sum_probs=132.7

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCC---CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCC
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRD---NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDK   86 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~   86 (380)
                      .+..+.+.+.+..|+|+ ++.|+..+.+   ..|.+||+.....      ..+......+....|+|||+.|+ +.+.++
T Consensus       190 ~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g  262 (427)
T PRK02889        190 SALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRR------RVVANFKGSNSAPAWSPDGRTLAVALSRDG  262 (427)
T ss_pred             EeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCE------EEeecCCCCccceEECCCCCEEEEEEccCC
Confidence            34567788999999998 5666665532   3589999864321      11222233456789999999887 567777


Q ss_pred             cEEEE--ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCC--CcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          87 TLRLW--DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTL--AHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        87 ~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      ...||  |+.+++ ...+..+........|+|||+.++..+. ++...+|.+.  ++........+  .......|+|++
T Consensus       263 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~SpDG  339 (427)
T PRK02889        263 NSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--SYNTSPRISPDG  339 (427)
T ss_pred             CceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--CCcCceEECCCC
Confidence            75555  554444 4445555555667889999998886554 5667777542  33222222222  223457899987


Q ss_pred             CCCEEEEEeCC---CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC---cEEEEECCCCcEEEEEE-ec
Q psy6984         162 QNPIIVSAGWD---RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM---NAMLWDLNDGKHLHTLV-HN  234 (380)
Q Consensus       162 ~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~-~~  234 (380)
                      +.  ++..+.+   ..|.+||+.+.+......+  .......|+|||+.|+.++.++   .+.+.+. +++....+. ..
T Consensus       340 ~~--Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~  414 (427)
T PRK02889        340 KL--LAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG  414 (427)
T ss_pred             CE--EEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence            63  4433333   2699999987665432222  2345678999999888776543   3455555 344333333 23


Q ss_pred             CceEEEEeec
Q psy6984         235 DIITALCFSP  244 (380)
Q Consensus       235 ~~i~~~~~~~  244 (380)
                      ..+...+|+|
T Consensus       415 g~~~~p~wsp  424 (427)
T PRK02889        415 GDVREPSWGP  424 (427)
T ss_pred             CCCCCCccCC
Confidence            4455556655

>KOG2321|consensus

Probab=99.47  E-value=3.2e-11  Score=105.01  Aligned_cols=276  Identities=17%  Similarity=0.283  Sum_probs=183.4

Q ss_pred             CCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeecccCC-CeEE-EEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          62 GHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTK-DVLS-VAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h~~-~v~~-~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      .+...-+.+..+|||+|+. +|-.--.|++||+.+  +..+++-|.. .+.. .-++.|-..++.-..|++|.+-.... 
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G-  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC-
Confidence            4566678899999999865 666778999999965  4444555543 3333 33455666666777788776653221 


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAM  218 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  218 (380)
                      .......   ...-..++++.-..  -|+.++....|.-+++..+.....+....+.++++.+++.-.+|++|+.+|.+.
T Consensus       126 ~hy~~RI---P~~GRDm~y~~~sc--Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE  200 (703)
T KOG2321|consen  126 RHYRTRI---PKFGRDMKYHKPSC--DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE  200 (703)
T ss_pred             eeeeeec---CcCCccccccCCCc--cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence            1111100   01122345543222  255555567788889998888777777778999999999999999999999999


Q ss_pred             EEECCCCcEEEEEEecCc------------eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee-eeccccce
Q psy6984         219 LWDLNDGKHLHTLVHNDI------------ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP-FFSLFRDV  285 (380)
Q Consensus       219 i~d~~~~~~~~~~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v  285 (380)
                      .||.+....+..+.....            ++++.|+.++-      .++.+...+.+++|++...+.... -.....+|
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL------~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL------HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCCce------eEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            999998877766643332            78888877642      345556678899999987654332 22233568


Q ss_pred             eEEEEeec--CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe
Q psy6984         286 LSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY  363 (380)
Q Consensus       286 ~~~~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~  363 (380)
                      ..+.|.+.  ++.++|. .-..++|||-.++.....++.                     ...+..+|+-|++-++++|.
T Consensus       275 ~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---------------------t~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  275 KKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---------------------TSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             eeecccccCCCceEEec-chHHhhhcccccCCceeeccc---------------------cCCcCceeeecCCceEEEec
Confidence            88999775  4566665 357899998655443322211                     11245788899999999999


Q ss_pred             eCCeEEEEEe
Q psy6984         364 SDNTIRVWQV  373 (380)
Q Consensus       364 ~dg~v~iw~~  373 (380)
                      .+..+..|-+
T Consensus       333 e~~~m~~yyi  342 (703)
T KOG2321|consen  333 ESSKMHTYYI  342 (703)
T ss_pred             CCCcceeEEc
Confidence            8887766544

>KOG0974|consensus

Probab=99.47  E-value=2.5e-12  Score=119.00  Aligned_cols=184  Identities=26%  Similarity=0.353  Sum_probs=146.0

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcc-----eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF-----ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE  103 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  103 (380)
                      ..+++.+..++.+.+|+.........     . .+...     ..-+.++++.-++++|+.-+.|.+|.....+....+.
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~-----i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSK-----I-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehh-----c-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            45677788888999998754322111     1 12211     1123356777789999999999999998655555688


Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc
Q psy6984         104 DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC  183 (380)
Q Consensus       104 ~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  183 (380)
                      +|.+.|..+.++.||.++++.|.|+++++|++.+........-+|+..++.+.|.|+    .++|++.|.+.++|+....
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~  248 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGT  248 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc----eeEEeccceEEEEEecccc
Confidence            999999999999999999999999999999987766655555689999999999986    6999999999999987665


Q ss_pred             eeeEeeeCCc-cceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         184 KLKINHSGHT-GYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       184 ~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      .+. .+.+|. ..|+.++.+++...+++++.|+.+++|++.
T Consensus       249 ~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  249 QLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             eeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            544 556664 469999999999999999999999999874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.44  E-value=5.7e-09  Score=91.81  Aligned_cols=265  Identities=13%  Similarity=0.179  Sum_probs=161.6

Q ss_pred             CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC----CCcEEEEECCCC--ce--eeeecccCCCeE
Q psy6984          39 NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW----DKTLRLWDLAAG--KT--TRRFEDHTKDVL  110 (380)
Q Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~--~~--~~~~~~h~~~v~  110 (380)
                      +.|.+|+++........... . .-......++++|++++|.+...    ++.|..|.+...  +.  +...........
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~-~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~   90 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQT-V-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC   90 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEE-E-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred             CcEEEEEEcCCCCCceEeee-e-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence            68888888543322211111 1 12223467889999999999877    468999988764  22  223332344566


Q ss_pred             EEEEeCCCCEEEEEe-CCCcEEEEeCCCcceEEEe---e----------CCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984         111 SVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIV---E----------DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK  176 (380)
Q Consensus       111 ~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~---~----------~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~  176 (380)
                      .++++|++++++++. .++.+.++++.....+...   .          ........++.++|+++. ++++.-....|.
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~-v~v~dlG~D~v~  169 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF-VYVPDLGADRVY  169 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE-EEEEETTTTEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCE-EEEEecCCCEEE
Confidence            799999999998876 5899999987653222111   1          012345789999998763 334433346899


Q ss_pred             EEeCCCce--eeE--eee-CCccceEEEEEcCCCCEEE-EEcCCCcEEEEECC--CCcE--EEEEEe-------cCceEE
Q psy6984         177 VWNLTNCK--LKI--NHS-GHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLN--DGKH--LHTLVH-------NDIITA  239 (380)
Q Consensus       177 iwd~~~~~--~~~--~~~-~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~~~--~~~~~~-------~~~i~~  239 (380)
                      +|++....  +..  ... ........+.|+|+++++. +...++.|.++++.  .++.  +.....       ......
T Consensus       170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence            99987654  321  111 2345678899999999764 45668899999987  4432  222211       125778


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcC--Cceeee--eeeccccceeEEEEeecCCEEEEee-CCCcEEEEec
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPIN--HGKMET--PFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNT  311 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~  311 (380)
                      ++++|++++.-...     .....+.+|.++  ++++..  ...........++++|+|++|+.+. .++.|.+|++
T Consensus       250 i~ispdg~~lyvsn-----r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  250 IAISPDGRFLYVSN-----RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEE-TTSSEEEEEE-----CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCCEEEEEe-----ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            89999987644332     235667788873  233321  1111123367899999999988876 4678999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=3.3e-09  Score=93.28  Aligned_cols=273  Identities=16%  Similarity=0.236  Sum_probs=159.4

Q ss_pred             EEEEeCC----CcEEEEEC--CCCceeeee-cccCCCeEEEEEeCCCCEEEEEeC----CCcEEEEeCCCc-ceEEEeeC
Q psy6984          79 ALSGSWD----KTLRLWDL--AAGKTTRRF-EDHTKDVLSVAFSVDNRQIVSSSR----DKTIKLWNTLAH-CKFTIVED  146 (380)
Q Consensus        79 l~s~~~d----~~i~vwd~--~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~~~----d~~v~iwd~~~~-~~~~~~~~  146 (380)
                      ++.|+..    +.|.+|++  .+++....- .........++++|++++|.+...    ++.|..|.+... ..+..+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            3445444    68888887  444433221 112345667889999999988876    468888876554 23322211


Q ss_pred             --CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc-eeeEe--ee-----------CCccceEEEEEcCCCCEEEE
Q psy6984         147 --GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC-KLKIN--HS-----------GHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       147 --~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~--~~-----------~~~~~i~~~~~~~~~~~l~~  210 (380)
                        ........++++|+++. ++++.-.++.|.++++... .+...  ..           .....+.++.++|+|+++++
T Consensus        82 ~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence              12234567888887652 3344456899999999763 22211  11           11235678999999998776


Q ss_pred             Ec-CCCcEEEEECCCCc--EEE----EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC--Cceeee--e--
Q psy6984         211 GG-KDMNAMLWDLNDGK--HLH----TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN--HGKMET--P--  277 (380)
Q Consensus       211 ~~-~d~~i~i~d~~~~~--~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~--  277 (380)
                      .. ....|.+|++....  ...    .+......+.++|+|++.+.-+..     ...+.+.++.+.  .+....  .  
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-----e~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-----ELSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-----TTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-----CCCCcEEEEeecccCCceeEEEEee
Confidence            53 34589999987654  221    123456688999999977643332     234556666655  333211  0  


Q ss_pred             -e---eccccceeEEEEeecCCEEEEeeC-CCcEEEEeccc-ceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984         278 -F---FSLFRDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLA-HCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA  351 (380)
Q Consensus       278 -~---~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                       +   .........++++|||++|+.+.+ ..+|.+|++.. ...+..        +....         .....-..++
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~--------~~~~~---------~~G~~Pr~~~  298 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL--------VQTVP---------TGGKFPRHFA  298 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE--------EEEEE---------ESSSSEEEEE
T ss_pred             eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE--------EEEEe---------CCCCCccEEE
Confidence             1   011124668999999999887664 56888888632 111111        11111         0112235789


Q ss_pred             EecCCCEEEEEe-eCCeEEEEEee
Q psy6984         352 WSTDGQTLFAGY-SDNTIRVWQVS  374 (380)
Q Consensus       352 ~s~dg~~l~~g~-~dg~v~iw~~~  374 (380)
                      ++|+|++|+++. .++.|.+|++.
T Consensus       299 ~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  299 FSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EeCCCCEEEEEecCCCeEEEEEEe
Confidence            999999999877 67799999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=8.9e-10  Score=100.12  Aligned_cols=206  Identities=17%  Similarity=0.158  Sum_probs=124.7

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      ..|.++|....+ .+.+..+...+...+|+|||+.++.++.+   ..|.+||+.++......  .+...+.+++|+|+++
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECCCCC
Confidence            368888875443 44455566678899999999999877644   47999998765433222  2334456789999875


Q ss_pred             CCEEEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC-CC--cEEEEECCCCcEEEEEEecCce
Q psy6984         163 NPIIVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK-DM--NAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       163 ~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      . ++++.+.++  .|.+||+.+..... ...+........|+|+|+.|+..+. ++  .|+++|+.+++....       
T Consensus       247 ~-l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-------  317 (417)
T TIGR02800       247 K-LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-------  317 (417)
T ss_pred             E-EEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-------
Confidence            4 444544443  58889988765432 2233344456789999998876554 33  466666554331100       


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC---cEEEEecccc
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK---TIKLWNTLAH  314 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~  314 (380)
                         .                                      ..........|+|+|++++.++.++   .|.+|++..+
T Consensus       318 ---~--------------------------------------~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       318 ---T--------------------------------------FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             ---e--------------------------------------cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence               0                                      0011233568899999988887765   5666665332


Q ss_pred             eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC
Q psy6984         315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN  366 (380)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg  366 (380)
                      ..            ..+..       .   .......|+|||++|+..+.++
T Consensus       357 ~~------------~~l~~-------~---~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       357 GE------------RVLTD-------T---GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             Ce------------EEccC-------C---CCCCCceECCCCCEEEEEEeCC
Confidence            11            00100       0   0112357999999988777655

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974|consensus

Probab=99.37  E-value=6.7e-11  Score=109.81  Aligned_cols=267  Identities=16%  Similarity=0.240  Sum_probs=167.4

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCccc-ccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGV-PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      ++|++|+. -.+.++|+........+ ..+.+..|...  .. ..-.+.+++++..-+.+..=+... +....+   ...
T Consensus        18 ~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e--~~-~~l~~~~~v~~~~~~~v~~~~~~~-~~~~~~---s~w   89 (967)
T KOG0974|consen   18 DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGE--GK-VKLLSGKIVTCAKSDEVYVKEASN-QIIERF---SDW   89 (967)
T ss_pred             ceeeecCC-CceEEeeCCchhHhhhhhhhccccccccc--cc-ceeccceEEEEEeecceeecchhh-hhhhhc---ccc
Confidence            45665554 37889988754332211 11223344110  00 011244566666544444332211 112222   233


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc---EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee
Q psy6984         109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW---VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL  185 (380)
Q Consensus       109 v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  185 (380)
                      +....+..+...++.++.++.+-+||.........+.  +...   ..++-+--.....++++|+.-+.|-+|+......
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            4445666778889999999999999976544333221  2211   1111111112334678888899999999875444


Q ss_pred             eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984         186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI  265 (380)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (380)
                      .....+|.+.|..+.++.||+++++.|.|..+++|++++.+...                                    
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------------------  211 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------------------------------------  211 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC------------------------------------
Confidence            44678999999999999999999999999999999998765321                                    


Q ss_pred             EEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCC
Q psy6984         266 LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPP  345 (380)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (380)
                                ...++|...++.+.|.|+  .++|+++|-+.++|+.. +.++..++                   .....
T Consensus       212 ----------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~-------------------~h~g~  259 (967)
T KOG0974|consen  212 ----------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYD-------------------EHSGK  259 (967)
T ss_pred             ----------cccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhh-------------------hhhhc
Confidence                      123456677888999988  89999999999999531 11111111                   11223


Q ss_pred             ceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         346 MCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       346 ~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      -+..++..++...++|++.|+.+++|+.-
T Consensus       260 ~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  260 GIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            35677778888888999999999999864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=8.3e-10  Score=99.51  Aligned_cols=227  Identities=11%  Similarity=0.013  Sum_probs=130.2

Q ss_pred             cCCCcceEEEEEccCCCEE---EEEeCC--CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-----CCcE
Q psy6984          61 KGHSHFISDIVLSSDGNYA---LSGSWD--KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-----DKTI  130 (380)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~l---~s~~~d--~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-----d~~v  130 (380)
                      +........-.|+|||+.+   ++...+  ..|++.++.+++..+. ....+.....+|+|||+.|+..+.     +-.+
T Consensus       181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI  259 (428)
T ss_pred             ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence            3344456678999999753   244433  3688889987765443 334455567899999998886553     2234


Q ss_pred             EEEeCCCc--ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE--eCCC-ceeeEeeeCCccceEEEEEcCCC
Q psy6984         131 KLWNTLAH--CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW--NLTN-CKLKINHSGHTGYLNTVTVSPDG  205 (380)
Q Consensus       131 ~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw--d~~~-~~~~~~~~~~~~~i~~~~~~~~~  205 (380)
                      ..|++...  .....+...........+|+|+++. ++++...++...+|  ++.. .........+...+....|+|||
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            44665431  1112222222223456799998764 33344445654555  4432 12122233334456778999999


Q ss_pred             CEEEEEcCC---CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984         206 SLCASGGKD---MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF  282 (380)
Q Consensus       206 ~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (380)
                      +.|+..+.+   ..|.+||+.+++..........+....|+|++....+...   ......++++++..++.. .+....
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~---~~g~~~L~~vdl~~g~~~-~Lt~~~  414 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG---NSNESELYLISLITKKTR-KIVIGS  414 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC---CCCCceEEEEECCCCCEE-EeecCC
Confidence            988866543   4799999988875433333335677889999875433221   123456777777665432 222333


Q ss_pred             cceeEEEEeec
Q psy6984         283 RDVLSVAFSVD  293 (380)
Q Consensus       283 ~~v~~~~~s~~  293 (380)
                      ..+...+|+|-
T Consensus       415 g~~~~p~Ws~~  425 (428)
T PRK01029        415 GEKRFPSWGAF  425 (428)
T ss_pred             CcccCceecCC
Confidence            34455566653

>KOG4190|consensus

Probab=99.34  E-value=1.5e-11  Score=106.76  Aligned_cols=288  Identities=18%  Similarity=0.267  Sum_probs=174.0

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC-------CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA-------GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI  130 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v  130 (380)
                      ..+.||++.|..++--.+.+-+++++.|.+|++|.++.       ..+..++..|+.+|.++.|-.+-++++  +.|+.+
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcc
Confidence            35789999999887666778899999999999999864       235667889999999999998877765  558889


Q ss_pred             EEEeCCCcceEEEee-CCCcCcEEEEEEccC-CCCCEEEEEeCCCeEEEEeCCCceeeEee-----eCCccceEEEEEcC
Q psy6984         131 KLWNTLAHCKFTIVE-DGHSDWVSCVRFSPN-HQNPIIVSAGWDRMVKVWNLTNCKLKINH-----SGHTGYLNTVTVSP  203 (380)
Q Consensus       131 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~  203 (380)
                      .+||..-+..+.+.. ......+..+...++ .+..+++.++...+|+++|.+.++.....     ++...-+.++++.|
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            999965444433222 122222333444454 23333444588999999999987644332     34556788999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEEe-cCceEEEEeecCcccceeeeeeeeeccccceEE-EEcCCceeeeeeecc
Q psy6984         204 DGSLCASGGKDMNAMLWDLNDGKHLHTLVH-NDIITALCFSPNRSFQKIKLDISRTLQKSNLIL-YPINHGKMETPFFSL  281 (380)
Q Consensus       204 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  281 (380)
                      .|++++++-..|.|.+.|.++|+.+..... +...-.++ .|..++.      ..+.-+..+.+ |....+.+.......
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L------~~saldHslaVnWhaldgimh~q~kpp  959 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQAL------AQSALDHSLAVNWHALDGIMHLQDKPP  959 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHH------HhhcccceeEeeehhcCCeeeeccCCC
Confidence            999999999999999999999987754321 00000000 1111111      01111233333 554444443322222


Q ss_pred             ccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE
Q psy6984         282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA  361 (380)
Q Consensus       282 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  361 (380)
                      ..+..-+  -.-|..|++......+.+|.-....       .-...+..++++       .-++..++++--|-+.-+.+
T Consensus       960 pepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~-------ha~stitKiR~d-------~f~G~lTala~LPLN~afLa 1023 (1034)
T KOG4190|consen  960 PEPAHFL--QSVGPSLVTAQNGNILGVYADSAEL-------HAESTITKIRPD-------EFPGTLTALAPLPLNCAFLA 1023 (1034)
T ss_pred             Ccchhhh--hccCceeEEeccCcEEEEEecchhh-------hhhhhhcccccc-------ccCCccceeeeccccchhhc
Confidence            1111000  1136678888777778887532211       111111122221       12333445665676776777


Q ss_pred             EeeCCeEEE
Q psy6984         362 GYSDNTIRV  370 (380)
Q Consensus       362 g~~dg~v~i  370 (380)
                      |+..|.|.+
T Consensus      1024 Gne~G~IaL 1032 (1034)
T KOG4190|consen 1024 GNEHGAIAL 1032 (1034)
T ss_pred             cCCCCceee
Confidence            888888865

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=9.7e-10  Score=100.07  Aligned_cols=201  Identities=17%  Similarity=0.160  Sum_probs=122.1

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCC---CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCC
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRD---NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDK   86 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~d---g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~   86 (380)
                      .+..+...+.+..|+|+ ++.|+..+.+   ..|.+|++.....      ..+......+....|+|||++|+ +...++
T Consensus       193 ~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        193 TLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRR------EQITNFEGLNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             EEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCE------EEccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence            34456678889999998 5676655533   3578888754321      11222223345689999999887 444455


Q ss_pred             --cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          87 --TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DK--TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        87 --~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                        .|++||+.+++..+ +..+........|+|||+.++..+. ++  .|.++++.++........+  .......|+|++
T Consensus       266 ~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg  342 (430)
T PRK00178        266 NPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADG  342 (430)
T ss_pred             CceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECCCC
Confidence              68889998876543 4445555667889999998876553 34  4556666554433222222  123356889987


Q ss_pred             CCCEEEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC---CcEEEEECCC
Q psy6984         162 QNPIIVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD---MNAMLWDLND  224 (380)
Q Consensus       162 ~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~  224 (380)
                      +. ++++...++  .|.++|+.+++.......  .......|+|+|+.++..+.+   ..+.++++..
T Consensus       343 ~~-i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        343 KT-LVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             CE-EEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            64 333333333  588899887654332221  122345899999988776543   3466667643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.8e-09  Score=98.36  Aligned_cols=207  Identities=13%  Similarity=0.091  Sum_probs=127.5

Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .|.++|...++. +.+..+...+...+|+|||+.++..+.+   ..|.+|++.++.......  ........+|+|+++.
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCE
Confidence            477888775543 4444566788999999999998876643   357888876654433221  1223456899998764


Q ss_pred             CEEEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC-C--CcEEEEECCCCcEEEEEEecCceE
Q psy6984         164 PIIVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK-D--MNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       164 ~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                       ++++...++  .|.+||+.+.+... +..+........|+|||+.++..+. +  ..|+++|+.+++............
T Consensus       257 -la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~  334 (430)
T PRK00178        257 -LAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA  334 (430)
T ss_pred             -EEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence             344544444  68888998766432 3334445566789999998766543 3  367777887776433222223334


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD  303 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  303 (380)
                      ...|+|++....+...   ......+.++++.+++... +... .......|+|||+.++..+.+
T Consensus       335 ~~~~Spdg~~i~~~~~---~~~~~~l~~~dl~tg~~~~-lt~~-~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        335 RPRLSADGKTLVMVHR---QDGNFHVAAQDLQRGSVRI-LTDT-SLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             ceEECCCCCEEEEEEc---cCCceEEEEEECCCCCEEE-ccCC-CCCCCceECCCCCEEEEEEec
Confidence            5678998876443221   1123357778877665422 2211 122356899999998776643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=7e-11  Score=95.54  Aligned_cols=291  Identities=19%  Similarity=0.281  Sum_probs=160.4

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----eeeeecccCC------------CeEEEEEeCCCC--EEEE
Q psy6984          63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-----TTRRFEDHTK------------DVLSVAFSVDNR--QIVS  123 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~--~~~s  123 (380)
                      ..+.|+++.|...|.||++|...|.|.+|.-....     ....+++|..            .|..+.|..++.  .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34568999999999999999999999999865432     1222344432            467788865543  6788


Q ss_pred             EeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-------ceeeEeeeCCccce
Q psy6984         124 SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-------CKLKINHSGHTGYL  196 (380)
Q Consensus       124 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~i  196 (380)
                      .+.|+++++|.+.........+..-++.+..    |.+ ++ +.+.   ..+++=.+..       .........|...|
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~----~~~-g~-~~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhi  175 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHS----PMG-GP-LTST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHI  175 (460)
T ss_pred             ecCCceeeeeeeecccchhhhcccccccccc----ccC-CC-cCCH---HHhhcccccccceEEEeccceeccccceeEe
Confidence            8899999999876543322222111221111    111 00 0000   0111111110       01112234688889


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE---------ecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV---------HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       197 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      ++++++.|.+.++++ .|-+|.+|++.-...-..+.         ....|++..|+|..-...+.     ...++.+.+-
T Consensus       176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-----SsSkG~Ikl~  249 (460)
T COG5170         176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-----SSSKGEIKLN  249 (460)
T ss_pred             eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-----ecCCCcEEeh
Confidence            999999999888765 67899999886543222221         12346666677643211110     1123333333


Q ss_pred             EcCCcee----------------eeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEee
Q psy6984         268 PINHGKM----------------ETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL  331 (380)
Q Consensus       268 ~~~~~~~----------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  331 (380)
                      +++...+                ...+.+..+.|.++.|+++|+|+++-+. -+|++||........    .+-.|.+.+
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi----kTi~~h~~l  324 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI----KTIPMHCDL  324 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc----eeechHHHH
Confidence            3321100                1112223356889999999999997553 589999864322110    111111111


Q ss_pred             CcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      ............--.-+.+.||.|.+.+.+|+..+..-||-+
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            111111111111112246889999999999999888888863

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=1.3e-09  Score=98.94  Aligned_cols=198  Identities=18%  Similarity=0.208  Sum_probs=125.5

Q ss_pred             eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeeecccCCCeEEEEEeC
Q psy6984          40 TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD---KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV  116 (380)
Q Consensus        40 ~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~  116 (380)
                      .|.++|.+...      ...+..+...+....|+|||++|+....+   ..|++||+.+++.... ..+...+.+++|+|
T Consensus       171 ~l~~~d~~g~~------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~sp  243 (417)
T TIGR02800       171 ELQVADYDGAN------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSP  243 (417)
T ss_pred             eEEEEcCCCCC------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECC
Confidence            46666654221      22344555668889999999999887654   4799999988765433 33455667789999


Q ss_pred             CCCEEEE-EeCCC--cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEeeeC
Q psy6984         117 DNRQIVS-SSRDK--TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINHSG  191 (380)
Q Consensus       117 ~~~~~~s-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~  191 (380)
                      ||+.++. .+.++  .|.+||+.++......  .+........|+|+++. ++++...++  .|.++|+.+.+... ...
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~-l~~~s~~~g~~~iy~~d~~~~~~~~-l~~  319 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKS-IAFTSDRGGSPQIYMMDADGGEVRR-LTF  319 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-eec
Confidence            9997764 44444  5778887655433222  22233345688887653 333333233  57788887665432 223


Q ss_pred             CccceEEEEEcCCCCEEEEEcCCC---cEEEEECCCCcEEEEEEecCceEEEEeecCcccc
Q psy6984         192 HTGYLNTVTVSPDGSLCASGGKDM---NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQ  249 (380)
Q Consensus       192 ~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~  249 (380)
                      +........|+|+|++++.++.++   .|.+||+.++... .+..........|+|++...
T Consensus       320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l  379 (417)
T TIGR02800       320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMI  379 (417)
T ss_pred             CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEE
Confidence            344567788999999999888776   8899998875432 22222233445788877543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1409|consensus

Probab=99.31  E-value=4.4e-10  Score=92.10  Aligned_cols=203  Identities=18%  Similarity=0.281  Sum_probs=141.6

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      .++++++.+++ ...|+.|-..|++.-+.+..+ .+..........|...|..+.|+...+++++.+.|..+.---.+.+
T Consensus        69 ~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sed-fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   69 SPCSAMEYVSE-SRRLYVGQDNGTVTEFALSED-FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCceEeeeecc-ceEEEEEEecceEEEEEhhhh-hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence            46788888887 467888889999998887643 3333445667899999999999999999999999987754444444


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL-AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      +.+..+.-.. ..+++.+.-.  +...|-..+.+.+-.+. ..........+|.+.+.++.|.|..  .+|++|..|..+
T Consensus       147 ~~lg~Y~~~~-~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~v  221 (404)
T KOG1409|consen  147 NRLGGYNFET-PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ--RLLFSGASDHSV  221 (404)
T ss_pred             CcccceEeec-cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC--cEEEeccccCce
Confidence            4443321110 0111111111  33444455555443321 2333344456899999999998854  489999999999


Q ss_pred             EEEeCCCcee-eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         176 KVWNLTNCKL-KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       176 ~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      -+||+...+. .....+|...+..+..-+--+.+.+++.||.|.+||.....
T Consensus       222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            9999976543 34567888888888888888899999999999999986543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2.7e-09  Score=96.27  Aligned_cols=223  Identities=12%  Similarity=0.026  Sum_probs=126.2

Q ss_pred             ccceEEEEeCCCCCC--eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-CC----cE
Q psy6984          16 NGWVTQIATNPKFPD--TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-DK----TL   88 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~--~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~----~i   88 (380)
                      ...+.+=.|+|+...  ++++...+|.-.||-.+.....    ...+...........|+|||++|+..+. +|    .+
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~----~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~  259 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA----GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI  259 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC----ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence            344556679998433  2335555555455543322111    1112222333456899999998886553 22    34


Q ss_pred             EEEECCCC---ceeeeecccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeC--CC-cceEEEeeCCCcCcEEEEEEccCC
Q psy6984          89 RLWDLAAG---KTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNT--LA-HCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        89 ~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~--~~-~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .+|++..+   +..+....+.......+|+|||+.|+..+ .++..++|..  .. ......+. .+...+....|+|++
T Consensus       260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG  338 (428)
T PRK01029        260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCC
Confidence            44676642   33333323223446789999999887665 5676666643  21 11122222 223345678999997


Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC---CCcEEEEECCCCcEEEEEEecCc
Q psy6984         162 QNPIIVSAGW--DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK---DMNAMLWDLNDGKHLHTLVHNDI  236 (380)
Q Consensus       162 ~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~  236 (380)
                      +. ++++...  ...|.+||+.+++...... ....+....|+|||+.|+..+.   ...|+++|+..++..........
T Consensus       339 ~~-Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~  416 (428)
T PRK01029        339 KK-IAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGE  416 (428)
T ss_pred             CE-EEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCc
Confidence            64 3333332  2469999998876543322 2335667899999998765432   35788889887765444444444


Q ss_pred             eEEEEeecC
Q psy6984         237 ITALCFSPN  245 (380)
Q Consensus       237 i~~~~~~~~  245 (380)
                      +...+|+|-
T Consensus       417 ~~~p~Ws~~  425 (428)
T PRK01029        417 KRFPSWGAF  425 (428)
T ss_pred             ccCceecCC
Confidence            556666653

>KOG4547|consensus

Probab=99.29  E-value=1.2e-09  Score=95.71  Aligned_cols=168  Identities=17%  Similarity=0.221  Sum_probs=132.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCceeeeecc---cCCCeEEEEEe--------------------CCCCEEEEEeCCCc
Q psy6984          73 SSDGNYALSGSWDKTLRLWDLAAGKTTRRFED---HTKDVLSVAFS--------------------VDNRQIVSSSRDKT  129 (380)
Q Consensus        73 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~--------------------~~~~~~~s~~~d~~  129 (380)
                      .|...|+|....||.+++||..+++..+.+..   -.+..++.+|.                    .|...++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            35568999999999999999999988877643   23444555442                    12335667888899


Q ss_pred             EEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE
Q psy6984         130 IKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC  208 (380)
Q Consensus       130 v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  208 (380)
                      |.+|+...+..-..+. ..|...|.++.++.+-  ..|.+++.|+.+..|+...........+....+.++.++|||..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999987665544443 6888999998877643  478999999999999999988888888888889999999999999


Q ss_pred             EEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeec
Q psy6984         209 ASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP  244 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~  244 (380)
                      ++++.  .|++||+++++.+..+. |..+++.+.|..
T Consensus       160 ~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  160 LTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTT  194 (541)
T ss_pred             Eeccc--eEEEEEccCceEEEEecCCCcceEEEEEEE
Confidence            98876  79999999999888874 677777777654

>KOG2321|consensus

Probab=99.29  E-value=2e-09  Score=94.10  Aligned_cols=277  Identities=14%  Similarity=0.146  Sum_probs=176.1

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcc--eEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF--ISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +|...-+.|..+|+..-.+|||-.-=.|++||+..-.    +   .+..|.+.  |.-..++.|-..++---.|..|-+.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS----L---KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS----L---KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce----e---eeeecccccceeEEEeccchhhheEeecCceeeeh
Confidence            6777889999999844447777788899999975321    1   13344332  3334455555556666667666654


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                      ..-.--....+   ...-.+++.+.-..-|+.++....|.-+++..++-+..+. .....++++.+++.+  .+|++|+.
T Consensus       122 ak~G~hy~~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~h--gLla~Gt~  195 (703)
T KOG2321|consen  122 AKYGRHYRTRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEH--GLLACGTE  195 (703)
T ss_pred             hhcCeeeeeec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecCcc--ceEEeccc
Confidence            32111111111   1122345554323334444444456666665554433322 234568899998864  47888888


Q ss_pred             CCeEEEEeCCCceeeEee------eCCcc-----ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe--cCceE
Q psy6984         172 DRMVKVWNLTNCKLKINH------SGHTG-----YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH--NDIIT  238 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~------~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~i~  238 (380)
                      +|.|..||.++......+      ..|.+     .|+++.|+.+|-.+++|..+|.+.|||+++.+++..-.|  .-+|.
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~  275 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK  275 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence            999999999875433222      22333     499999999999999999999999999999888766554  44677


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                      .+.|.+...-.     ...+..+.-+.+|+-.+|+....... ..++..+++-|++.+++++-.++.+..+
T Consensus       276 ~l~~~~~~~q~-----~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  276 KLDWQDTDQQN-----KVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             eecccccCCCc-----eEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeE
Confidence            77776652211     11223455667888888876544333 3458889999999999999887766655

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=2.5e-09  Score=97.21  Aligned_cols=223  Identities=17%  Similarity=0.123  Sum_probs=126.0

Q ss_pred             ccCCCcceEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEE-EeCCCc--EEEE
Q psy6984          60 LKGHSHFISDIVLSSDGNYALSGSWD---KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKT--IKLW  133 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~--v~iw  133 (380)
                      +..+...+....|+|||++|+..+.+   ..|++||+.+++.... ....+.....+|+|||+.++. .+.++.  |.++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            34456678889999999998876543   2689999988765332 222333456899999998764 566665  6666


Q ss_pred             eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984         134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       134 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                      |+.++......  .+........|+|+++. ++++...++  .|.++|+.+++..... .........+|+|||++++..
T Consensus       292 dl~tg~~~~lt--~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        292 DIATKALTRIT--RHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMV  367 (448)
T ss_pred             ECCCCCeEECc--cCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEE
Confidence            76554433222  22334566889998764 334443333  5666777765543221 112223456899999988776


Q ss_pred             cCC-C--cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEE
Q psy6984         212 GKD-M--NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV  288 (380)
Q Consensus       212 ~~d-~--~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  288 (380)
                      +.+ +  .|.++|+.+++.. .+..........|+|++....+...   ......+++++.+ ++....+......+...
T Consensus       368 ~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~---~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p  442 (448)
T PRK04792        368 NRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTT---YQGKQVLAAVSID-GRFKARLPAGQGEVKSP  442 (448)
T ss_pred             EecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEe---cCCceEEEEEECC-CCceEECcCCCCCcCCC
Confidence            543 3  4566788777643 2221112223468888765433221   1112234455543 33333333333344455


Q ss_pred             EEee
Q psy6984         289 AFSV  292 (380)
Q Consensus       289 ~~s~  292 (380)
                      +|+|
T Consensus       443 ~Wsp  446 (448)
T PRK04792        443 AWSP  446 (448)
T ss_pred             ccCC
Confidence            5554

>KOG0280|consensus

Probab=99.27  E-value=3.8e-09  Score=84.94  Aligned_cols=207  Identities=15%  Similarity=0.145  Sum_probs=133.8

Q ss_pred             CCeEEEeecCCCCCCcccccccccCCCcceEEEEEc---cCCC-EEEEEeCCCcEEEEECCCCceeeeecccC------C
Q psy6984          38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS---SDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHT------K  107 (380)
Q Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~------~  107 (380)
                      -|.+.++++....... .....-+.| ..+..+.|.   .+|. .++-+...|+|.+|..........+++-.      -
T Consensus        45 ~Gkl~Lys~~d~~~~~-l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~  122 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLSP-LDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV  122 (339)
T ss_pred             ccceEEEeecccccCc-cceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence            3567777765432111 111111122 234445553   3455 56677888999999766544444333211      1


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc-ee
Q psy6984         108 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC-KL  185 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~  185 (380)
                      ...++.|++.+..++++-.+|.+.+-+... .-...+.-+.|.-.++...|+-... .++++|+.|+.+..||++-. +.
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTF  201 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcce
Confidence            245778899999999999999887443211 1111112246777788888876554 48899999999999999933 22


Q ss_pred             eEe-eeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECC-CCcEEEEEEecCceEEEEeecCcc
Q psy6984         186 KIN-HSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLN-DGKHLHTLVHNDIITALCFSPNRS  247 (380)
Q Consensus       186 ~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~  247 (380)
                      ... .+-|...|.++.-+| .+.++++|++|..|++||.+ -++++..-.....|-.+.++|.-.
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence            222 345777888887765 67899999999999999998 466666656667777888777543

>KOG2314|consensus

Probab=99.27  E-value=6.5e-09  Score=90.63  Aligned_cols=285  Identities=15%  Similarity=0.208  Sum_probs=176.2

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-----------CCcEEEEeC
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-----------DKTIKLWNT  135 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-----------d~~v~iwd~  135 (380)
                      =+-+.|||-|.||+|--.-| |.+|--.+-..++++. | ..|.-+.|||..++|+|-+.           ...++|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35688999999999998876 7799765544555442 4 45888999999999998763           257899998


Q ss_pred             CCcceEEEeeC--CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         136 LAHCKFTIVED--GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       136 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      .++.......-  +....-.-.+|+.+..  +++- -....|.+|+..+..+.-...-....|....|+|.+++||-=..
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdK--y~Ar-m~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDK--YFAR-MTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCc--eeEE-eccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            87654332211  1111112246666543  4443 23368899988775443322333456778889999887763221


Q ss_pred             -----CCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeec----cccceEEEEcCCceeeeeeecccc
Q psy6984         214 -----DMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTL----QKSNLILYPINHGKMETPFFSLFR  283 (380)
Q Consensus       214 -----d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  283 (380)
                           -.++.+-.+.+.+.+.... ++-.-..+-|..++.+.+...+-....    .-.++.++.+....+.........
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke  446 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE  446 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence                 1355566666666555432 233334566777777766654432222    234566777766655555556667


Q ss_pred             ceeEEEEeecCCEEEEeeCC---CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEE
Q psy6984         284 DVLSVAFSVDNRQIVSSSRD---KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF  360 (380)
Q Consensus       284 ~v~~~~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  360 (380)
                      .|...+|-|.|.-++.-+..   .++.+|...+..       ...+++.           ......+..+.|||.|++++
T Consensus       447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-------~~~~lVk-----------~~dk~~~N~vfwsPkG~fvv  508 (698)
T KOG2314|consen  447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-------KKPSLVK-----------ELDKKFANTVFWSPKGRFVV  508 (698)
T ss_pred             heeeeeeccCCCeEEEEEccccccceeEEEeecCC-------Cchhhhh-----------hhcccccceEEEcCCCcEEE
Confidence            88999999999887764432   356666432100       0111111           11234567899999999987


Q ss_pred             EE---eeCCeEEEEEeee
Q psy6984         361 AG---YSDNTIRVWQVSV  375 (380)
Q Consensus       361 ~g---~~dg~v~iw~~~~  375 (380)
                      .+   |..|.+.++|.+.
T Consensus       509 va~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  509 VAALVSRRGDLEFYDTDY  526 (698)
T ss_pred             EEEecccccceEEEecch
Confidence            63   4578999999874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.27  E-value=1.1e-07  Score=79.10  Aligned_cols=281  Identities=13%  Similarity=0.144  Sum_probs=166.2

Q ss_pred             CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC---CcEEEEECCC--Cceeee--ecccCCCeE
Q psy6984          38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD---KTLRLWDLAA--GKTTRR--FEDHTKDVL  110 (380)
Q Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~--~~~~~~--~~~h~~~v~  110 (380)
                      ..-|.+|++.........+  ..-.+....+-++++|++++|.++-.+   |.|..|.+..  |+....  ...-..+..
T Consensus        15 s~gI~v~~ld~~~g~l~~~--~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLL--QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchh--hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            5679999987543322222  233455667899999999999988654   6777777664  444322  112223347


Q ss_pred             EEEEeCCCCEEEEEe-CCCcEEEEeCCCcceEEE--eeCCCcC----------cEEEEEEccCCCCCEEEEEeC-CCeEE
Q psy6984         111 SVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTI--VEDGHSD----------WVSCVRFSPNHQNPIIVSAGW-DRMVK  176 (380)
Q Consensus       111 ~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~~~--~~~~~~~----------~v~~~~~~~~~~~~~l~s~~~-d~~v~  176 (380)
                      -+++++++++++++. ..|.|.++-+.....+..  ....|..          .+.+..+.|+++  +|++... ...|.
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~  170 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIF  170 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEE
Confidence            799999999988776 457888887644222110  0112222          277889999865  4554422 34789


Q ss_pred             EEeCCCceeeEeee---CCccceEEEEEcCCCCEEEE-EcCCCcEEEEECCCC-cEEEEEEecCceEEEEeecCccccee
Q psy6984         177 VWNLTNCKLKINHS---GHTGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLNDG-KHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       177 iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      +|++..+++.....   .......-+.|+|++++... .-.+++|.+|..... ..+..+..-      ..-|..     
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i------~tlP~d-----  239 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI------DTLPED-----  239 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee------ccCccc-----
Confidence            99998766543221   12345678999999997654 456889999987663 222222110      001110     


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEe
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEE  330 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  330 (380)
                                                 +........+..+|||++|..+.+ ...|-++.+...         +.++...
T Consensus       240 ---------------------------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~---------~g~L~~~  283 (346)
T COG2706         240 ---------------------------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD---------GGKLELV  283 (346)
T ss_pred             ---------------------------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC---------CCEEEEE
Confidence                                       011122346788899999998754 235666655332         2211110


Q ss_pred             eCcccccccCCCCCCceEEEEEecCCCEEEEEee-CCeEEEEEeeee
Q psy6984         331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS-DNTIRVWQVSVT  376 (380)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~-dg~v~iw~~~~~  376 (380)
                      ..       ...+...-....++++|++|+++.. +..|.+|.++..
T Consensus       284 ~~-------~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         284 GI-------TPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             EE-------eccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            00       0111222246788999999998885 446999987643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.26  E-value=1.2e-07  Score=92.69  Aligned_cols=301  Identities=13%  Similarity=0.181  Sum_probs=182.8

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCcEEEE----ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC---
Q psy6984          63 HSHFISDIVLSSDGNYALSGSWDKTLRLW----DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT---  135 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~~d~~i~vw----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~---  135 (380)
                      ..+.|.++.+-++...++.+..+|.|.+.    +..+. .......-...|.+++||||++.++..+.++++.+.+.   
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd  152 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD  152 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence            34578899999999999999999999999    44332 23333344568999999999999999998988877531   


Q ss_pred             -C----------Cc---------ceEEEe------------eC--------C---CcCcEEEEEEccCCCCCEEEEEeC-
Q psy6984         136 -L----------AH---------CKFTIV------------ED--------G---HSDWVSCVRFSPNHQNPIIVSAGW-  171 (380)
Q Consensus       136 -~----------~~---------~~~~~~------------~~--------~---~~~~v~~~~~~~~~~~~~l~s~~~-  171 (380)
                       .          +.         .+.++.            .+        +   ..+.-..|.|-.++  .++++.+. 
T Consensus       153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG--~yFAVss~~  230 (928)
T PF04762_consen  153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG--EYFAVSSVE  230 (928)
T ss_pred             EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC--cEEEEEEEE
Confidence             0          00         000000            00        0   11223345555544  46665443 


Q ss_pred             -----CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC---CCcEEEEECCCCcEEEEEE-----ecCceE
Q psy6984         172 -----DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK---DMNAMLWDLNDGKHLHTLV-----HNDIIT  238 (380)
Q Consensus       172 -----d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~-----~~~~i~  238 (380)
                           -+.+|+|+-+ +.+......-.+--.+++|.|.|+++|+.-.   ...|.+|.- +|-.-..+.     ....+.
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence                 2578999865 4443222222233356899999999988754   345666653 443333332     245689


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee---eccccceeEEEEeecCC-EEEEeeCCCcEEEEec---
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF---FSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWNT---  311 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~---  311 (380)
                      .+.|++++...++..       ...+.+|...........   +.....+..+.|+|... .|...+.+|.+..++.   
T Consensus       309 ~l~Wn~ds~iLAv~~-------~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~  381 (928)
T PF04762_consen  309 ELAWNSDSEILAVWL-------EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD  381 (928)
T ss_pred             EEEECCCCCEEEEEe-------cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence            999999988766543       234888888776643221   22223345599999654 4666666676665432   


Q ss_pred             -cc--------ceeeeEeecccceEEEeeCccccc----ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         312 -LA--------HCKFTIVDLETKKMVEELRPDVVS----QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       312 -~~--------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                       ..        .....++|..+..+ ..++...++    ...-.-+..|.+++|++++..+++-..||.|.+|.....
T Consensus       382 v~~s~~~~~~D~g~vaVIDG~~lll-Tpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  382 VSRSPGSSPNDNGTVAVIDGNKLLL-TPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             EEecCCCCccCceEEEEEeCCeEEE-ecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence             21        12344445444332 223221111    111123456789999999988998999999999986543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.26  E-value=1.5e-07  Score=91.98  Aligned_cols=344  Identities=16%  Similarity=0.252  Sum_probs=190.6

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCC--------CCCcc----------cccccccC--
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD--------DTNYG----------VPQKRLKG--   62 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~--------~~~~~----------~~~~~~~~--   62 (380)
                      ....++++.+.+   .|.+++|+|+ .++++....++++.+-..+-+        ...++          .....++|  
T Consensus       110 ~~~~E~VG~vd~---GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~  185 (928)
T PF04762_consen  110 EDEIEIVGSVDS---GILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSA  185 (928)
T ss_pred             CceeEEEEEEcC---cEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcch
Confidence            445667776654   8999999998 678888888888876543210        00000          00001110  


Q ss_pred             ----------------------CCcceEEEEEccCCCEEEEEeC---C---CcEEEEECCCCceeeeecccCCCeEEEEE
Q psy6984          63 ----------------------HSHFISDIVLSSDGNYALSGSW---D---KTLRLWDLAAGKTTRRFEDHTKDVLSVAF  114 (380)
Q Consensus        63 ----------------------h~~~v~~~~~~~~~~~l~s~~~---d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  114 (380)
                                            +.+.-..+.|-.||+|+|+.+.   .   ..|+||+-+ |+....-+.-.+--.+++|
T Consensus       186 gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~W  264 (928)
T PF04762_consen  186 GKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSW  264 (928)
T ss_pred             hhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccC
Confidence                                  2334457889999999998775   2   479999965 5544443333333457899


Q ss_pred             eCCCCEEEEEeC---CCcEEEEeCCC--cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee
Q psy6984         115 SVDNRQIVSSSR---DKTIKLWNTLA--HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH  189 (380)
Q Consensus       115 ~~~~~~~~s~~~---d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  189 (380)
                      -|.|+++|+...   ...|.+|...+  +..+..........|..+.|++++.  +|+..- ...|.+|-..+..-..++
T Consensus       265 rPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~--iLAv~~-~~~vqLWt~~NYHWYLKq  341 (928)
T PF04762_consen  265 RPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSE--ILAVWL-EDRVQLWTRSNYHWYLKQ  341 (928)
T ss_pred             CCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCC--EEEEEe-cCCceEEEeeCCEEEEEE
Confidence            999999998775   34677776433  2223222223455789999999764  566544 445999998876432222


Q ss_pred             --e-CCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984         190 --S-GHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI  265 (380)
Q Consensus       190 --~-~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (380)
                        . .....+..+.|+|.. ..|.....++.+..++..-     ..         +.++.....  ............+.
T Consensus       342 ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-----~v---------~~s~~~~~~--D~g~vaVIDG~~ll  405 (928)
T PF04762_consen  342 EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-----DV---------SRSPGSSPN--DNGTVAVIDGNKLL  405 (928)
T ss_pred             EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE-----EE---------EecCCCCcc--CceEEEEEeCCeEE
Confidence              1 112234458899854 4566666667776655311     00         001100000  00001111234455


Q ss_pred             EEEcCCceeeeee----eccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCccc-ccccC
Q psy6984         266 LYPINHGKMETPF----FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDV-VSQST  340 (380)
Q Consensus       266 ~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  340 (380)
                      +.++....+.-|+    .....+|.+++|++++..++.-..||.|.+|..........   ............. .....
T Consensus       406 lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  482 (928)
T PF04762_consen  406 LTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSV---KPPKLLSSISLDSMDISDS  482 (928)
T ss_pred             EecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccc---cCcchhhhccccccccccc
Confidence            5555544333222    23346799999999998888888999999997432211000   0000000010000 00011


Q ss_pred             CCCCCceEEEEEecCCCEEEEEeeC---CeEEEEEe
Q psy6984         341 KADPPMCLSLAWSTDGQTLFAGYSD---NTIRVWQV  373 (380)
Q Consensus       341 ~~~~~~~~~~~~s~dg~~l~~g~~d---g~v~iw~~  373 (380)
                      .........++|-.++..++....+   ..+.++++
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  518 (928)
T PF04762_consen  483 ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI  518 (928)
T ss_pred             ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence            1223345678888888776655543   56777766

>KOG2041|consensus

Probab=99.26  E-value=3.5e-09  Score=95.06  Aligned_cols=293  Identities=12%  Similarity=0.092  Sum_probs=185.5

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccc----------ccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGV----------PQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      +....+++|+.. ..+++.|+.||.++|-++..+......          .-..+.||...|.-+.|+.+.+.|-+...+
T Consensus        14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            456889999987 579999999999999998754222111          123578999999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFED--HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      |-|.||=+-.+.-......  .+..|.+++|..||+.++....||.|.+=.+..........  .......+.|+++.. 
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~-  169 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLE-  169 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHH-
Confidence            9999998876654433322  34458899999999999999999988665433221111000  011123567777654 


Q ss_pred             CEEEEEeCCCeEEEEeCCCce-------eeEeeeC----CccceEEEEE--------cCCCCEEEEEcCCCcEEEEECCC
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCK-------LKINHSG----HTGYLNTVTV--------SPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~-------~~~~~~~----~~~~i~~~~~--------~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                       .++-+-.+|.+.++|....-       ......+    ....|..+.|        -|+-..|+.+-..|++.+-.-.+
T Consensus       170 -~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  170 -QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             -HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence             34445567888999875321       1111111    1112334444        36788999999999998876554


Q ss_pred             CcEEEEEEecCceEEEEeecCcccceeeee-eee-eccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         225 GKHLHTLVHNDIITALCFSPNRSFQKIKLD-ISR-TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      ....-.+..+-.+....|++++.+.++.-. ... ...+.+..-+-..-|+..+.+.-....|++++|-..|-.++-+ -
T Consensus       249 D~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v  327 (1189)
T KOG2041|consen  249 DPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V  327 (1189)
T ss_pred             CCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence            443334445566778889998876554321 111 1122333333333455555555556778888887666555543 3


Q ss_pred             CCcEEEEecccc
Q psy6984         303 DKTIKLWNTLAH  314 (380)
Q Consensus       303 dg~v~iw~~~~~  314 (380)
                      |+.|++=++.+.
T Consensus       328 dsfiyfanIRP~  339 (1189)
T KOG2041|consen  328 DSFIYFANIRPE  339 (1189)
T ss_pred             cceEEEEeeccc
Confidence            666666555443

>KOG2314|consensus

Probab=99.26  E-value=1.5e-08  Score=88.42  Aligned_cols=312  Identities=14%  Similarity=0.207  Sum_probs=178.9

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-----------Cc
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-----------KT   87 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----------~~   87 (380)
                      -+.+.|+|. +.+|+|-=.. -|.+|--.    .+... .++ .| ..|.-+.|||.-+||+|-+..           ..
T Consensus       213 etyv~wSP~-GTYL~t~Hk~-GI~lWGG~----~f~r~-~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~  283 (698)
T KOG2314|consen  213 ETYVRWSPK-GTYLVTFHKQ-GIALWGGE----SFDRI-QRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ  283 (698)
T ss_pred             eeeEEecCC-ceEEEEEecc-ceeeecCc----cHHHH-Hhc-cC-CCceeeecCCccceEEEecCCccccCcccCCCce
Confidence            356779998 7899988765 46889432    22211 111 23 357889999999999997642           57


Q ss_pred             EEEEECCCCceeeeecccCC--Ce-EEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          88 LRLWDLAAGKTTRRFEDHTK--DV-LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~--~v-~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      ++|||+.+|...+.+..-..  .+ --..||.|++++|--.. ..|.||+..+-..+.. ..-.-..|....|+|.++  
T Consensus       284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-Kslki~gIr~FswsP~~~--  359 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-KSLKISGIRDFSWSPTSN--  359 (698)
T ss_pred             EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-cccCCccccCcccCCCcc--
Confidence            99999999998887765222  22 24689999999986555 4688998544111100 001123356667777532  


Q ss_pred             EEE--EEeCC---CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE----------cCCCcEEEEECCCCc-EE
Q psy6984         165 IIV--SAGWD---RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG----------GKDMNAMLWDLNDGK-HL  228 (380)
Q Consensus       165 ~l~--s~~~d---~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~d~~i~i~d~~~~~-~~  228 (380)
                      +|+  +-..+   ..+.+..+.+.+.+....-+...=..+-|..+|.+|+.-          +.=..+.|+.++... ++
T Consensus       360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            332  11111   223344444433333322233333445667777777642          222345666665543 45


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc--ccceeEEEEeecCCEEEEe---eCC
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL--FRDVLSVAFSVDNRQIVSS---SRD  303 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~---~~d  303 (380)
                      ..+...+.+-..+|-|.+..-++   +.....+.++..|.+......-.+...  ......+.|+|.|++++.+   |..
T Consensus       440 e~velke~vi~FaWEP~gdkF~v---i~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~  516 (698)
T KOG2314|consen  440 EVVELKESVIAFAWEPHGDKFAV---ISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRR  516 (698)
T ss_pred             eeeecchheeeeeeccCCCeEEE---EEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccc
Confidence            66677888999999998753222   122223566777766532111111111  1234578999999998875   456


Q ss_pred             CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC
Q psy6984         304 KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN  366 (380)
Q Consensus       304 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg  366 (380)
                      |.+.++|+.-         +..+.           .........+.+-|.|.|++++|++.-.
T Consensus       517 g~l~F~D~~~---------a~~k~-----------~~~~eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  517 GDLEFYDTDY---------ADLKD-----------TASPEHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             cceEEEecch---------hhhhh-----------ccCccccccccceECCCCCEEEEeeehh
Confidence            7888887531         00000           0111122235688999999999987543

>KOG4547|consensus

Probab=99.24  E-value=2.6e-09  Score=93.71  Aligned_cols=188  Identities=20%  Similarity=0.284  Sum_probs=139.4

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCccc-ccccccCCCcceEEEEE--------------------ccCCCEEEEEeCCCc
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGV-PQKRLKGHSHFISDIVL--------------------SSDGNYALSGSWDKT   87 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~--------------------~~~~~~l~s~~~d~~   87 (380)
                      ..++|....||.+++|+...+.....+ |...+.+   .-.+..|                    +.|...++-|-..|.
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~---t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG---TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccC---cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            578999999999999998765332211 1111221   1122221                    224457788889999


Q ss_pred             EEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          88 LRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      |.+|++..++...++.  .|.+.|.++.++.+-..|.+++.|..+..|+.......... ......+.+++++|++.  .
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~~~sl~is~D~~--~  158 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPLVSSLCISPDGK--I  158 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCccceEEEcCCCC--E
Confidence            9999999999988875  68999999999988889999999999999986655444443 34455688899999854  6


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC-----CCEEEEE-cCCCcEEEEECCC
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD-----GSLCASG-GKDMNAMLWDLND  224 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~d~~i~i~d~~~  224 (380)
                      +++++  ++|++||+++.+.+..+.||.++|.+++|-.+     |.+++++ ..+.-+.+|-++.
T Consensus       159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            77766  89999999999999999999999999999766     6666654 3455666675443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.23  E-value=6e-08  Score=96.52  Aligned_cols=258  Identities=11%  Similarity=0.103  Sum_probs=157.1

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccc---------cCCCcceEEEEEccCCCEEEEEeC-CCcEEE
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL---------KGHSHFISDIVLSSDGNYALSGSW-DKTLRL   90 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~v   90 (380)
                      .+++.+..+.++++-+.++.|++|+..... ...+.....         .++-.....+++.++++.|+.+.. ++.|++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            456665445677777778899999875321 100000000         011223578999998887766654 567999


Q ss_pred             EECCCCceeeeeccc-----------------CCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCC-----
Q psy6984          91 WDLAAGKTTRRFEDH-----------------TKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG-----  147 (380)
Q Consensus        91 wd~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~-----  147 (380)
                      +|+.++... .+.+-                 -.....++++| ++..+++.+.++.|++||...+........+     
T Consensus       651 id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        651 IDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            998775432 22110                 11346799999 5566677778889999997554332221111     


Q ss_pred             --------CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC---------------------CccceEE
Q psy6984         148 --------HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG---------------------HTGYLNT  198 (380)
Q Consensus       148 --------~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------------~~~~i~~  198 (380)
                              .-.....++++|++.. ++++-+.++.|++||+.+........+                     .-.....
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~-LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKE-LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence                    1123456889987653 556667789999999986543211100                     0113468


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee
Q psy6984         199 VTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF  278 (380)
Q Consensus       199 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (380)
                      ++++++|.++++-..+++|++||..++...........     -.+++                          ..   .
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~-----G~~dG--------------------------~~---~  854 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA-----GFKDG--------------------------KA---L  854 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc-----CCCCC--------------------------cc---c
Confidence            89999999999999999999999887654322110000     00000                          00   0


Q ss_pred             eccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         279 FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       279 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      .........++++++|+.+++-+.++.|++|++.++.
T Consensus       855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            0111234578999999998888889999999987654

>KOG0882|consensus

Probab=99.23  E-value=5.5e-10  Score=94.75  Aligned_cols=285  Identities=17%  Similarity=0.186  Sum_probs=181.5

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCC-CCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-CCcEEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTR-DDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-DKTLRLW   91 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vw   91 (380)
                      -|.+.|+.+...-  .+++.+++-||.++.|.... ....   -.+.+..|-..|..++.+.++.++.|++. |..++++
T Consensus         7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvE---fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVE---FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             cccceeeeEeeeh--hheEEeeecchhhhhcCCCCcccee---ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            4788888886553  47999999999999997654 2211   13456788888999999999999999777 9999999


Q ss_pred             ECCCCceeeee--cccCCCeEEEEEeCCC----CEEEEEeCCCcEEEEeCCCc-ceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          92 DLAAGKTTRRF--EDHTKDVLSVAFSVDN----RQIVSSSRDKTIKLWNTLAH-CKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        92 d~~~~~~~~~~--~~h~~~v~~~~~~~~~----~~~~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      |+.+-....-+  ..-.+.+..+ -++ |    ...++.-.++.+.++|-... +.......-|..+|.++.+++.+.  
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv-~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D--  157 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWV-TSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD--  157 (558)
T ss_pred             EeeccchhhhcccccCCCceEEe-cCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc--
Confidence            99775444222  2222222222 122 3    23334557789999996543 344455567899999999998765  


Q ss_pred             EEEEEeCCCeEEEEeCCC------ceeeEe---------eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984         165 IIVSAGWDRMVKVWNLTN------CKLKIN---------HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~------~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      .+++....|.|..|....      .++...         +.-......++.|+|+|..+.+-+.|..|++++..+++.+.
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ  237 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence            466777789999998873      111111         12234567889999999999999999999999999998765


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc-ceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR-DVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      .+....  .....-|..++........+..             ..+..+..+.. .-+.+.|...|++|+-|+-=| |++
T Consensus       238 eiDE~~--t~~~~q~ks~y~l~~VelgRRm-------------averelek~~~~~~~~~~fdes~~flly~t~~g-ikv  301 (558)
T KOG0882|consen  238 EIDEVL--TDAQYQPKSPYGLMHVELGRRM-------------AVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV  301 (558)
T ss_pred             hhhccc--hhhhhccccccccceeehhhhh-------------hHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence            542110  0001111112211111111100             00111111111 123567888899998876543 788


Q ss_pred             EecccceeeeEeecc
Q psy6984         309 WNTLAHCKFTIVDLE  323 (380)
Q Consensus       309 w~~~~~~~~~~~~~~  323 (380)
                      .++.++...+++...
T Consensus       302 in~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  302 INLDTNTVVRILGKD  316 (558)
T ss_pred             EEeecCeEEEEeccc
Confidence            888888777776543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=9.5e-08  Score=95.12  Aligned_cols=273  Identities=15%  Similarity=0.187  Sum_probs=157.7

Q ss_pred             EEEEEccC-CCEEEEEeCCCcEEEEECCCCceeeeecc--------------cCCCeEEEEEeCCCCEEEEEe-CCCcEE
Q psy6984          68 SDIVLSSD-GNYALSGSWDKTLRLWDLAAGKTTRRFED--------------HTKDVLSVAFSVDNRQIVSSS-RDKTIK  131 (380)
Q Consensus        68 ~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~~s~~-~d~~v~  131 (380)
                      ..++++++ ++.+++-..++.|.++|... +.+..+..              .-.....+++++++..++.+. ..+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788764 55666767788899999764 44433322              112357899999888665544 456788


Q ss_pred             EEeCCCcceEEEeeCCC---------------cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-------
Q psy6984         132 LWNTLAHCKFTIVEDGH---------------SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-------  189 (380)
Q Consensus       132 iwd~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------  189 (380)
                      .+|..+.....+...+.               -..-..++++|++. .++++...++.|++||..++......       
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g-~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE-KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC-eEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            88865543322211100               11235789988533 36677777899999998775443211       


Q ss_pred             -eC------CccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccc
Q psy6984         190 -SG------HTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQK  261 (380)
Q Consensus       190 -~~------~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  261 (380)
                       .+      .-.....++++|+++ ++++-+.++.|++||+.++.... ........     +...+.            
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~gg~~~~-----~~~l~~------------  790 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAGGDPTF-----SDNLFK------------  790 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEeccccc-----Cccccc------------
Confidence             00      112456799999988 55566778999999998765321 11111000     000000            


Q ss_pred             cceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCC
Q psy6984         262 SNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK  341 (380)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (380)
                           +....+....   ........++++++|..+++-..++.|++||..++....+...-..    ... +-.  ...
T Consensus       791 -----fG~~dG~g~~---~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~----G~~-dG~--~~~  855 (1057)
T PLN02919        791 -----FGDHDGVGSE---VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA----GFK-DGK--ALK  855 (1057)
T ss_pred             -----ccCCCCchhh---hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc----CCC-CCc--ccc
Confidence                 0000000000   0011234789999999888888899999999765544333211000    000 000  001


Q ss_pred             CCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       342 ~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ..-.....++++++|+++++-+.++.|++|++..
T Consensus       856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        856 AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             cccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            1111235789999999888888999999999854

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=6.4e-09  Score=94.55  Aligned_cols=216  Identities=15%  Similarity=0.139  Sum_probs=122.6

Q ss_pred             cccceEEEEeCCCCCCeEEEee-CCC--eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE-EeCCCc--E
Q psy6984          15 HNGWVTQIATNPKFPDTILSCS-RDN--TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS-GSWDKT--L   88 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~-~dg--~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~--i   88 (380)
                      +...+.+..|+|+ ++.|+..+ .++  .|.+||+.....   .......+   ......|+|||+.|+. .+.++.  |
T Consensus       216 ~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~I  288 (448)
T PRK04792        216 SPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEI  288 (448)
T ss_pred             CCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEE
Confidence            3456678899998 56665544 334  466777654321   01111222   2346889999998865 556664  8


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe-CCCc--EEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKT--IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      +++|+.+++..+ +..+.......+|+|||+.++..+ .++.  +.++|+.++........+.  ......|+|+++. +
T Consensus       289 y~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~-l  364 (448)
T PRK04792        289 YVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRS-M  364 (448)
T ss_pred             EEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCE-E
Confidence            888988776543 444555567789999999887655 3444  4445655444333222222  2234688998764 3


Q ss_pred             EEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC-C--cEEEEECCCCcEEEEEEe-cCceEE
Q psy6984         166 IVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD-M--NAMLWDLNDGKHLHTLVH-NDIITA  239 (380)
Q Consensus       166 l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~-~~~i~~  239 (380)
                      +++...++  .|.++|+.+.+........  ......|+|+|+.++..+.+ +  .+++++. ++.....+.. ...+..
T Consensus       365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~  441 (448)
T PRK04792        365 IMVNRTNGKFNIARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKS  441 (448)
T ss_pred             EEEEecCCceEEEEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCC
Confidence            34444344  4556787776543222111  12245799999987765543 3  3666676 4444443322 333445


Q ss_pred             EEeec
Q psy6984         240 LCFSP  244 (380)
Q Consensus       240 ~~~~~  244 (380)
                      .+|+|
T Consensus       442 p~Wsp  446 (448)
T PRK04792        442 PAWSP  446 (448)
T ss_pred             CccCC
Confidence            55554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.19  E-value=2.3e-07  Score=79.83  Aligned_cols=167  Identities=16%  Similarity=0.174  Sum_probs=123.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC-cEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK-TIKLWNTLAHCKFTIVEDGHSDWVS  153 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~  153 (380)
                      +|++++..|. |..+|.+...+-.++  .+|.+.|.-..+..+++-++.|..|| .+-++|..+.......  ..-..|.
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNIE  405 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--CCccceE
Confidence            6889998886 577777765554444  35677788888888888999999999 8999997766543332  3445689


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC----CcEEEEECCCCcEEE
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD----MNAMLWDLNDGKHLH  229 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~  229 (380)
                      .+..++++.  .++.+.....+.+.|+.++.....-+...+-|....|+|+++++|-+--+    ..|+++|+..++...
T Consensus       406 av~vs~dGK--~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         406 AVKVSPDGK--KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             EEEEcCCCc--EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            999999875  57777777889999999988776666667789999999999999976554    578999998887655


Q ss_pred             EEEecCceEEEEeecCccc
Q psy6984         230 TLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~  248 (380)
                      .....+.-.+-+|.|++.+
T Consensus       484 vTT~ta~DfsPaFD~d~ry  502 (668)
T COG4946         484 VTTPTAYDFSPAFDPDGRY  502 (668)
T ss_pred             ecCCcccccCcccCCCCcE
Confidence            4433333334455566544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.18  E-value=4.2e-07  Score=78.44  Aligned_cols=276  Identities=13%  Similarity=0.095  Sum_probs=146.5

Q ss_pred             CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC----------CCcEEEEECCCCceeeeeccc---
Q psy6984          39 NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW----------DKTLRLWDLAAGKTTRRFEDH---  105 (380)
Q Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~h---  105 (380)
                      ++|.+.|.......-.++    .|....  .+ ++||++.|+.+..          +..|.+||..+.+.+.++..-   
T Consensus        27 ~~v~ViD~~~~~v~g~i~----~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTD----GGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEE----ccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence            788888876533211111    122212  24 8999999887766          679999999999998877531   


Q ss_pred             ----CCCeEEEEEeCCCCEEEEEe-C-CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         106 ----TKDVLSVAFSVDNRQIVSSS-R-DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       106 ----~~~v~~~~~~~~~~~~~s~~-~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                          ......++++|||++++... . +..|-+.|+.++.....+.-+....+  ...   +..... .-+.|+......
T Consensus       100 ~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~v--y~t---~e~~~~-~~~~Dg~~~~v~  173 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHI--FPT---ANDTFF-MHCRDGSLAKVG  173 (352)
T ss_pred             hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEE--EEe---cCCccE-EEeecCceEEEE
Confidence                12234788999999988665 3 78999999887766554443221111  111   111111 222344433332


Q ss_pred             CCC-ceee-Ee---eeCCccceEE-EEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceee
Q psy6984         180 LTN-CKLK-IN---HSGHTGYLNT-VTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIK  252 (380)
Q Consensus       180 ~~~-~~~~-~~---~~~~~~~i~~-~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (380)
                      +.. ++.. ..   +.+....+.. -.+.+ +|+++..... |.|.+.|+.........    .+..+.+...       
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~----~~~~~~~~~~-------  241 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP----AIEAFTEAEK-------  241 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc----eeeecccccc-------
Confidence            221 1110 00   0000000000 03345 7887777766 99999997554321110    0000000000       


Q ss_pred             eeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc-eeeeEeecccceEEEee
Q psy6984         253 LDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-CKFTIVDLETKKMVEEL  331 (380)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~  331 (380)
                              +..   |             ......-++++|+++.++.....+. . |....+ ..+.++|.++.+.+..+
T Consensus       242 --------~~~---w-------------rP~g~q~ia~~~dg~~lyV~~~~~~-~-~thk~~~~~V~ViD~~t~kvi~~i  295 (352)
T TIGR02658       242 --------ADG---W-------------RPGGWQQVAYHRARDRIYLLADQRA-K-WTHKTASRFLFVVDAKTGKRLRKI  295 (352)
T ss_pred             --------ccc---c-------------CCCcceeEEEcCCCCEEEEEecCCc-c-ccccCCCCEEEEEECCCCeEEEEE
Confidence                    000   0             0011223789999988777432221 0 222211 23445556666655544


Q ss_pred             CcccccccCCCCCCceEEEEEecCCC-EEEEEe-eCCeEEEEEeee
Q psy6984         332 RPDVVSQSTKADPPMCLSLAWSTDGQ-TLFAGY-SDNTIRVWQVSV  375 (380)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~g~-~dg~v~iw~~~~  375 (380)
                      ...          ..+..++++|||+ +|++.+ .++.|.+.|+..
T Consensus       296 ~vG----------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       296 ELG----------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             eCC----------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            321          2356899999999 888766 588899999753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315|consensus

Probab=99.18  E-value=8.4e-08  Score=83.97  Aligned_cols=276  Identities=12%  Similarity=0.168  Sum_probs=162.9

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe-----CC-----CcEEEEeCC
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-----RD-----KTIKLWNTL  136 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-----~d-----~~v~iwd~~  136 (380)
                      .+..+++++|++++.+. +..++|++...+..+.....  ..+.++.|+|-+.++.+--     .+     --+++|++.
T Consensus        37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve  113 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE  113 (566)
T ss_pred             ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence            56778899887766655 56899999988764443322  2788999999999886431     22     346689876


Q ss_pred             CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC--EEEE----
Q psy6984         137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS--LCAS----  210 (380)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~----  210 (380)
                      +......+....+. -+++.|+++..   ++.--..+.+.+|++.+.+.. ...-|...|+.+.++|.+.  .+|+    
T Consensus       114 t~~~~s~~q~k~Q~-~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  114 TGVQRSQIQKKMQN-GWVPQFSIDES---LAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             cceehhheehhhhc-Ccccccccchh---hhhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccC
Confidence            63332222222222 25788887643   332223468999999874332 3334677889999998743  3443    


Q ss_pred             -EcCCCcEEEEECCCCcEEEEE----EecCceEEEEeecCcccceeee--eee----eeccccceEEEEcCCceeeeeee
Q psy6984         211 -GGKDMNAMLWDLNDGKHLHTL----VHNDIITALCFSPNRSFQKIKL--DIS----RTLQKSNLILYPINHGKMETPFF  279 (380)
Q Consensus       211 -~~~d~~i~i~d~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~  279 (380)
                       .|.=+.++||.+.....-..+    .....-..+.|.+-+....+..  ++.    ...++..++++.++......+ .
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L  267 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-L  267 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-c
Confidence             455578999987532211111    1122223445555443222211  111    123455677777773333322 3


Q ss_pred             ccccceeEEEEeecCCEEEEee--CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC
Q psy6984         280 SLFRDVLSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ  357 (380)
Q Consensus       280 ~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  357 (380)
                      ...++|.++.|+|+++.++.+-  .=-.+.|+|.....            +..+.           .+.-.++-|+|.|+
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------------v~df~-----------egpRN~~~fnp~g~  324 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------------VFDFP-----------EGPRNTAFFNPHGN  324 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------------eEeCC-----------CCCccceEECCCCC
Confidence            4468899999999998877653  23466677643221            11111           11224678999999


Q ss_pred             EEEEEe---eCCeEEEEEee
Q psy6984         358 TLFAGY---SDNTIRVWQVS  374 (380)
Q Consensus       358 ~l~~g~---~dg~v~iw~~~  374 (380)
                      +|+.++   --|.+.|||+.
T Consensus       325 ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  325 IILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             EEEEeecCCCCCceEEEecc
Confidence            987644   46789999986

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.16  E-value=2.9e-07  Score=82.43  Aligned_cols=264  Identities=13%  Similarity=0.080  Sum_probs=147.8

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      ++.++.++.+|.+..+|....+......   +..  .......  .++..++.++.++.+..+|..+|+.+.+.... ..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~---~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~  136 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVD---LDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SE  136 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeec---CCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ce
Confidence            4578888888999999876544332211   111  0011122  25678889999999999999999887765432 22


Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE-----EEEEEccCCCCCEEEEEeCCCeEEEEeCCCc
Q psy6984         109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV-----SCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC  183 (380)
Q Consensus       109 v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  183 (380)
                      +.+.... .+..++.++.++.+..||..++.......... ...     .+..+. +   ..++.+..++.+..+|.+++
T Consensus       137 ~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~-~---~~v~~~~~~g~v~ald~~tG  210 (377)
T TIGR03300       137 VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIA-D---GGVLVGFAGGKLVALDLQTG  210 (377)
T ss_pred             eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEE-C---CEEEEECCCCEEEEEEccCC
Confidence            2211111 34567778889999999987665443322111 100     011111 1   25677778899999999887


Q ss_pred             eeeEeeeCCc--c-----ceEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeee
Q psy6984         184 KLKINHSGHT--G-----YLNTVTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD  254 (380)
Q Consensus       184 ~~~~~~~~~~--~-----~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  254 (380)
                      +.........  +     ....+.-+|  .+..+..++.++.++.+|..+++.+........ .......+        .
T Consensus       211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~~~~--------~  281 (377)
T TIGR03300       211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAVDDN--------R  281 (377)
T ss_pred             CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceEeCC--------E
Confidence            7654322100  0     000010111  345777788899999999999987765542211 11111111        1


Q ss_pred             eeeeccccceEEEEcCCceeeeeeecccc-ceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984         255 ISRTLQKSNLILYPINHGKMETPFFSLFR-DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                      +.....++.++.++..+++..-....... ...+..  ..+..++.++.+|.|+++|..++..+
T Consensus       282 vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       282 LYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--VVGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             EEEECCCCeEEEEECCCCcEEEccccccCCccccCE--EECCEEEEEeCCCEEEEEECCCCCEE
Confidence            11122356677777766654322211111 111111  24678889999999999987555443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=9.1e-07  Score=76.40  Aligned_cols=259  Identities=12%  Similarity=0.046  Sum_probs=135.6

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEee---------CCCeEEEeecCCCCCCccccc--c-cccCCCcceEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCS---------RDNTLIIWKLTRDDTNYGVPQ--K-RLKGHSHFISD   69 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~---------~dg~v~vw~~~~~~~~~~~~~--~-~~~~h~~~v~~   69 (380)
                      +.++.+...++..-..+-- + .+|+...+.++.+         .+..|.+||.........++.  . ++. .......
T Consensus        33 D~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-~~~~~~~  109 (352)
T TIGR02658        33 DGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-VGTYPWM  109 (352)
T ss_pred             ECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh-ccCccce
Confidence            4456666666664332222 4 7887544555556         688999999876543322221  0 011 1223457


Q ss_pred             EEEccCCCEEEEEe-C-CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE----E
Q psy6984          70 IVLSSDGNYALSGS-W-DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT----I  143 (380)
Q Consensus        70 ~~~~~~~~~l~s~~-~-d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~----~  143 (380)
                      ++++|||++|+... . +..|.+.|+.+++.+.++.- .+...-...+ +...+ .-+.||..............    .
T Consensus       110 ~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       110 TSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             EEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEec-CCccE-EEeecCceEEEEecCCCceEEeeee
Confidence            88999999999776 3 68999999999998887653 1111111111 11111 22333333322211111100    0


Q ss_pred             eeCCCcCcE-EEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee-----EeeeC-------CccceEEEEEcCCCCEEEE
Q psy6984         144 VEDGHSDWV-SCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK-----INHSG-------HTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       144 ~~~~~~~~v-~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~~-------~~~~i~~~~~~~~~~~l~~  210 (380)
                      +.....+.+ ..-.|.+.... .++... +|.|.+.|+......     .....       ..+.+..++++|+++.+..
T Consensus       187 vf~~~~~~v~~rP~~~~~dg~-~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       187 VFHPEDEYLINHPAYSNKSGR-LVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             eecCCccccccCCceEcCCCc-EEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence            000100000 00133442222 343333 399999996443211     11100       1233444889998887776


Q ss_pred             EcC----------CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec
Q psy6984         211 GGK----------DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS  280 (380)
Q Consensus       211 ~~~----------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (380)
                      ...          .+.|.++|..+++.+..+...                                              
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----------------------------------------------  298 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----------------------------------------------  298 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCCeEEEEEeCC----------------------------------------------
Confidence            432          146777777666655443211                                              


Q ss_pred             cccceeEEEEeecCC-EEEEee-CCCcEEEEeccccee
Q psy6984         281 LFRDVLSVAFSVDNR-QIVSSS-RDKTIKLWNTLAHCK  316 (380)
Q Consensus       281 ~~~~v~~~~~s~~~~-~l~s~~-~dg~v~iw~~~~~~~  316 (380)
                        ..++.++++||++ +|++.. .++.|.+.|..+++.
T Consensus       299 --~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       299 --HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             --CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence              2456788899998 777655 578898887655443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.14  E-value=5.7e-08  Score=83.44  Aligned_cols=146  Identities=16%  Similarity=0.193  Sum_probs=109.7

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCC-eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDN-TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWD   92 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg-~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   92 (380)
                      +|.+.|.-.....+ ++-++.|..|| .+-+++.....      .++....-..|.++..+++|++++.+-....|.++|
T Consensus       357 ~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid  429 (668)
T COG4946         357 GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID  429 (668)
T ss_pred             CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCce------EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence            67778887777665 56788898898 89999876432      233444556799999999999999999999999999


Q ss_pred             CCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          93 LAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK----TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        93 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      +.+++....-+...+-|+.++|+|+++.+|-+-.+|    .|+++|+.++.........  ..=.+-+|.|+++..++++
T Consensus       430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEEEEe
Confidence            999988776666677899999999999999887776    6789998776554433221  1123467788776555554

>KOG4714|consensus

Probab=99.14  E-value=1.4e-09  Score=85.87  Aligned_cols=207  Identities=15%  Similarity=0.155  Sum_probs=122.7

Q ss_pred             cCccc-ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC------ccc-ccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984          13 NGHNG-WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN------YGV-PQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus        13 ~~h~~-~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~------~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      .+|.+ .|+.+.+..+  ..|+++..++.+....+-+....      ..+ +++.+..|...-.+-..+--++.++++..
T Consensus        32 ~~~~d~~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   32 MQHADVKLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             ccccceEEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence            34443 2555555544  36888877777766654321111      011 22334444444333334445678999999


Q ss_pred             CCcEEEEECCCCceee-eec-ccCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCCCcceEEEeeCCCcCcEEEEEE
Q psy6984          85 DKTLRLWDLAAGKTTR-RFE-DHTKDVLSVAFSVDNRQIVSSSR-----DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRF  157 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~-~~~-~h~~~v~~~~~~~~~~~~~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~  157 (380)
                      ||.+.+.+.+....+. +.. .|.+ -.+.+....++.+.++.-     -+..+.|++.....+..... ..+.|.+++-
T Consensus       110 dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~  187 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCS  187 (319)
T ss_pred             CceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhC
Confidence            9999999876521111 111 1111 112222233444444321     12345565543332222111 1234889999


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceee-EeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCC
Q psy6984         158 SPNHQNPIIVSAGWDRMVKVWNLTNCKLK-INHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      +|..+ .+++.|+.||.+-+||.++.... ..+..|..+++.+-|+| ++..|++++.||.+..||..+
T Consensus       188 hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  188 HPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             Ccccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99754 47889999999999999876432 23567999999999999 677999999999999999764

>KOG4190|consensus

Probab=99.12  E-value=6.7e-10  Score=96.74  Aligned_cols=211  Identities=19%  Similarity=0.265  Sum_probs=139.9

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcc--cccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG--VPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ..++.||...|..|.--.+ .+-++++|+|.+|++|.+..+.-..+  ..+.+++.|+.+|.++.|-.+-+++++  .||
T Consensus       728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccC
Confidence            3478999999998876544 56799999999999999876432221  234467899999999999988887765  578


Q ss_pred             cEEEEECCCCceeeeecc--cCCCeEEEEEeCC--CCEEEEE-eCCCcEEEEeCCCcceE--EEee--CCCcCcEEEEEE
Q psy6984          87 TLRLWDLAAGKTTRRFED--HTKDVLSVAFSVD--NRQIVSS-SRDKTIKLWNTLAHCKF--TIVE--DGHSDWVSCVRF  157 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~--~~~~~s~-~~d~~v~iwd~~~~~~~--~~~~--~~~~~~v~~~~~  157 (380)
                      -|++||.=-++.+.....  ..+.+..+..-++  ...++.+ +...+|+++|.+...-.  ..+.  .+...-++|+++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            899999866666554322  1223333333333  3334444 77889999997653211  1111  233456889999


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEE-EECCCC
Q psy6984         158 SPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML-WDLNDG  225 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~  225 (380)
                      .+.++  .++.+-.+|.|.+.|.++++.+............++ .|..+.++....|..+.+ |-...+
T Consensus       885 a~~GN--~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  885 ADKGN--KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             ccCcc--hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence            88765  477787899999999999886654433322222222 355667777777878777 754444

>KOG0280|consensus

Probab=99.12  E-value=6.1e-09  Score=83.80  Aligned_cols=203  Identities=12%  Similarity=0.105  Sum_probs=130.5

Q ss_pred             ceEEEEeCC--CCCC-eEEEeeCCCeEEEeecCCCCCCccc-ccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          18 WVTQIATNP--KFPD-TILSCSRDNTLIIWKLTRDDTNYGV-PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        18 ~v~~i~~~~--~~~~-~l~t~~~dg~v~vw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .+..|.|..  ..++ .++-+-.+|.|.++..........+ +....+-..-...++.|++.+..++++..+|.+.+-+.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~  150 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE  150 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence            344455442  2233 4566777889999876532211111 11111111112346678899999999999999996665


Q ss_pred             CCCcee--eeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          94 AAGKTT--RRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        94 ~~~~~~--~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      ......  +.++.|.-+..-.+|+. +.+.+.+|+.|+.+..||++-... ......-|...|.+|.-+|. ...++++|
T Consensus       151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~-~~~~I~TG  229 (339)
T KOG0280|consen  151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPP-KPTYIATG  229 (339)
T ss_pred             ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCC-CCceEEEe
Confidence            544443  37788998888888875 446788999999999999873322 22224467778999988875 34589999


Q ss_pred             eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC--CEEEEEcCCCcEEEEEC
Q psy6984         170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG--SLCASGGKDMNAMLWDL  222 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~  222 (380)
                      +.|..|++||.++.........-.+.|+.+..+|.-  +.++++-..| .++-+.
T Consensus       230 sYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~  283 (339)
T KOG0280|consen  230 SYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDS  283 (339)
T ss_pred             ccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEe
Confidence            999999999999644333222334789999988843  3444444443 344443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.09  E-value=4.4e-07  Score=78.73  Aligned_cols=245  Identities=14%  Similarity=0.145  Sum_probs=156.0

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--------------
Q psy6984          63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--------------  128 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--------------  128 (380)
                      ..-++..+.+||-|.+|++.... .|.+|.-.....+..+.  ...|..+.|+|.+.+|.+-+...              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            44467889999999999988876 48899876655444432  35688999999999999887654              


Q ss_pred             -cEEEEeCCCcceEEEeeC-CCcCcEE-EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCccceEEEEEcCC
Q psy6984         129 -TIKLWNTLAHCKFTIVED-GHSDWVS-CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTGYLNTVTVSPD  204 (380)
Q Consensus       129 -~v~iwd~~~~~~~~~~~~-~~~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~  204 (380)
                       .+.+||..++........ ......+ -+.|+-+..  +++-. ....+.++++...-....+. -....+...+++|.
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPE  184 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCC
Confidence             388999766544332211 1111122 356655432  22211 23478888862211111111 11345777888886


Q ss_pred             CC--EEE-----EEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeeeeee-----eccccceEEEEcCC
Q psy6984         205 GS--LCA-----SGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISR-----TLQKSNLILYPINH  271 (380)
Q Consensus       205 ~~--~l~-----~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  271 (380)
                      ++  .|+     ..+..+++++|.+..++.+.+. ..+..-..+.|.+.+.+..+......     ..+..+++++.+..
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e  264 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE  264 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence            44  233     2577899999999877766544 23445567788888877665544333     22456788888875


Q ss_pred             ceeeeeeeccccceeEEEEeecCCEEEEee--CCCcEEEEecccc
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSS--RDKTIKLWNTLAH  314 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~~~  314 (380)
                      ....... ...++|.+.+|+|.++.++..+  .+-.+.++++..+
T Consensus       265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             cccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence            4443333 5578899999999998877655  5778888887655

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.08  E-value=2.8e-07  Score=74.48  Aligned_cols=231  Identities=16%  Similarity=0.182  Sum_probs=123.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCC--ceeeeec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          70 IVLSSDGNYALSGSWDKTLRLWDLAAG--KTTRRFE---DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        70 ~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~---~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      ++.+.+|+.||.- .|..|.|-..+++  ..+.+..   .-...-+.++|+||+..||.+...|+|++||+.+.....+ 
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I-   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI-   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc-
Confidence            5667788766654 4667877766543  1222222   2233467899999999999999999999999876443322 


Q ss_pred             eCCC------cCcEEEEEEccCCC----CCEEEEEeCCCeEEEEeCCC-----ceee--EeeeC-CccceEEEEEcCCCC
Q psy6984         145 EDGH------SDWVSCVRFSPNHQ----NPIIVSAGWDRMVKVWNLTN-----CKLK--INHSG-HTGYLNTVTVSPDGS  206 (380)
Q Consensus       145 ~~~~------~~~v~~~~~~~~~~----~~~l~s~~~d~~v~iwd~~~-----~~~~--~~~~~-~~~~i~~~~~~~~~~  206 (380)
                      ...+      ...|..+.|.+...    ...|+.-..+|.++-|-+..     .+..  ..+.. +...|+++.++|.-+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            2111      23466666654321    12355566677777665421     1111  12222 356899999999988


Q ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeec--cccceEEEEcCCceeeeeeeccccc
Q psy6984         207 LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTL--QKSNLILYPINHGKMETPFFSLFRD  284 (380)
Q Consensus       207 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  284 (380)
                      +|+.||....=      .+.   .......+++...-.+.++...........  .....-++.+...+...........
T Consensus       161 LLlVgG~~~~~------~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~  231 (282)
T PF15492_consen  161 LLLVGGCEQNQ------DGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG  231 (282)
T ss_pred             EEEEeccCCCC------Ccc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence            87777643210      000   000111222222222222221110000000  0001111111111111111122356


Q ss_pred             eeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         285 VLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       285 v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      |..|..||||..||+...+|.|.+|++
T Consensus       232 i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  232 IFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             eEEEEECCCCCEEEEEEcCCeEEEEec
Confidence            889999999999999999999999976

>KOG3914|consensus

Probab=99.07  E-value=2.6e-09  Score=89.45  Aligned_cols=157  Identities=17%  Similarity=0.279  Sum_probs=101.8

Q ss_pred             EEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccc-ccccccCCCcceEEEEEccCCCEEEEE---eCCCcEEEEECCCCc
Q psy6984          22 IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGV-PQKRLKGHSHFISDIVLSSDGNYALSG---SWDKTLRLWDLAAGK   97 (380)
Q Consensus        22 i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~i~vwd~~~~~   97 (380)
                      +..++. +.++|.+..+....++++......... ....+....   +++.+..+......+   +....+.+|....+.
T Consensus        68 ~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~---~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   68 VLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP---TAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc---ceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            334444 567777776666556665543321110 011112222   334444444444433   444556666655433


Q ss_pred             eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984          98 TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV  177 (380)
Q Consensus        98 ~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~i  177 (380)
                      . ...-+|-.-+++++++||+++++++.+|..|++=.............+|...|..+++-++.   .|+++|.|++|++
T Consensus       144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~---~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY---LLLSGSGDKTLRL  219 (390)
T ss_pred             c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc---eeeecCCCCcEEE
Confidence            3 33458999999999999999999999999999866544333344456899999999998753   4899999999999


Q ss_pred             EeCCCceee
Q psy6984         178 WNLTNCKLK  186 (380)
Q Consensus       178 wd~~~~~~~  186 (380)
                      ||+++++..
T Consensus       220 Wd~~sgk~L  228 (390)
T KOG3914|consen  220 WDITSGKLL  228 (390)
T ss_pred             EecccCCcc
Confidence            999998765

>KOG1064|consensus

Probab=99.06  E-value=1.5e-09  Score=106.32  Aligned_cols=158  Identities=20%  Similarity=0.318  Sum_probs=119.2

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE
Q psy6984          64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  142 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~  142 (380)
                      -..|.++.-+|..-+-+||+.||.+++|....++.+..++. -...|+.+.|+.+|..+..+..||.+-+|....  +..
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~ 2285 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPY 2285 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cce
Confidence            34455666678888999999999999999988877766543 226789999999999999999999999998652  222


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEE---eCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSA---GWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAM  218 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~---~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  218 (380)
                      .-.+.|.......+|-..    ++++.   +.++.+.+||..... .......|.+.++++++-|.-++|++|+.+|.++
T Consensus      2286 ~s~qchnk~~~Df~Fi~s----~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIGS----LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred             eccccCCccccceeeeeh----hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence            223455555666666541    34443   457889999975322 2223378999999999999999999999999999


Q ss_pred             EEECCCCcE
Q psy6984         219 LWDLNDGKH  227 (380)
Q Consensus       219 i~d~~~~~~  227 (380)
                      +||++..+.
T Consensus      2362 l~D~rqrql 2370 (2439)
T KOG1064|consen 2362 LFDIRQRQL 2370 (2439)
T ss_pred             EeehHHHHH
Confidence            999875543

>KOG0309|consensus

Probab=99.06  E-value=1.1e-09  Score=98.51  Aligned_cols=213  Identities=21%  Similarity=0.278  Sum_probs=142.5

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      +...+.||...|+.+-|+|..++.+++|+.|-.+-.||......    +...........+.++|+.-.-.+.+.+....
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~----p~ys~~~w~s~asqVkwnyk~p~vlasshg~~  181 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR----PFYSTSSWRSAASQVKWNYKDPNVLASSHGND  181 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc----ceeeeecccccCceeeecccCcchhhhccCCc
Confidence            55678899999999999999999999999999999999876532    22333334455678999864444555566678


Q ss_pred             EEEEECCCC-ceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          88 LRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        88 i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      |++||++.| .++..+++|...|..++|.. ....+.+.+.|++|++||-.+.............+++--++.|-+...+
T Consensus       182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence            999999765 56777788888888888853 3446789999999999996543332221122233455566666554422


Q ss_pred             EEEEeCCCeEEEEeCCC----------ceeeEeeeCCccceEEEEEcCCC----------CEEEEEcCCCcEEEEECCC
Q psy6984         166 IVSAGWDRMVKVWNLTN----------CKLKINHSGHTGYLNTVTVSPDG----------SLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~----------~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~  224 (380)
                      +.---.+..+-+++-++          ...+..+.||...|....|-..+          -.|++=+.|..+++|.+.+
T Consensus       262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            22111112344433322          24456677888776555443322          2689999999999998754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=9.3e-07  Score=79.45  Aligned_cols=205  Identities=17%  Similarity=0.125  Sum_probs=113.6

Q ss_pred             cEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEE-EcC--CCcEEEEECCCC
Q psy6984         151 WVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS-GGK--DMNAMLWDLNDG  225 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~--d~~i~i~d~~~~  225 (380)
                      ......|+|+++..++++..  .+..|.++|+.+++...... ..+......|+|||+.++. .+.  +..|+++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            56678999998653443332  24678999998876544332 3444556789999987654 333  357888898777


Q ss_pred             cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984         226 KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       226 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      +...............|+|++........   ......+++.++..++.....+...   ....|||||++++..+....
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sd---r~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSD---RLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEEC---CCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCC
Confidence            64332223333345679999875443322   1233567888887776644333211   12489999999887664321


Q ss_pred             EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee-CCeEEEEEeee
Q psy6984         306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS-DNTIRVWQVSV  375 (380)
Q Consensus       306 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~-dg~v~iw~~~~  375 (380)
                      - -+. .....+.++++++... ..+..     .     .......|||||++|+.... .+.-.+|-+.+
T Consensus       342 ~-~~~-~~~~~I~v~d~~~g~~-~~LT~-----~-----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        342 N-EFG-KNTFNLYLISTNSDYI-RRLTA-----N-----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             c-ccC-CCCcEEEEEECCCCCe-EECCC-----C-----CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence            0 000 0001222333333321 11111     0     01124689999998875443 44555665543

>KOG2041|consensus

Probab=98.96  E-value=1.5e-08  Score=91.12  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=110.2

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------------eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGK---------------TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI  130 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v  130 (380)
                      ...|+.|+....++++|+.||-++|..+.+..               .-+.+++|.+.|.-+.|+.+.+.+-+...+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            46799999999999999999999998775421               124578999999999999999999999999999


Q ss_pred             EEEeCCCcceE-EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEE
Q psy6984         131 KLWNTLAHCKF-TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLC  208 (380)
Q Consensus       131 ~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l  208 (380)
                      .+|-+.++.-. ..+.+....-|.+++|+.+++.  +...-.||.|-+=.+...+..- .+++  .....+.|++|.+.+
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k--IcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK--ICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA  171 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE--EEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence            99986554211 1222334455788888887764  5555556665554443322110 1111  123457899999999


Q ss_pred             EEEcCCCcEEEEECCC
Q psy6984         209 ASGGKDMNAMLWDLND  224 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~~  224 (380)
                      +.+-..|.+.++|...
T Consensus       172 Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQG  187 (1189)
T ss_pred             HhhhcCCcEEEecccc
Confidence            8898999999998653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.94  E-value=2.9e-06  Score=70.88  Aligned_cols=231  Identities=14%  Similarity=0.195  Sum_probs=140.5

Q ss_pred             CCcEEEEeCCCcce-EE-EeeCCCcCcEEEEEEccCCCCCEEEEEeC---CCeEEEEeCCC--ceeeEe--eeCCccceE
Q psy6984         127 DKTIKLWNTLAHCK-FT-IVEDGHSDWVSCVRFSPNHQNPIIVSAGW---DRMVKVWNLTN--CKLKIN--HSGHTGYLN  197 (380)
Q Consensus       127 d~~v~iwd~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~--~~~~~~--~~~~~~~i~  197 (380)
                      +.-|.+|++.+... .. ...-.......-++++|+.+  .|+++..   ++.|.-|.+..  +++...  ......+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~--~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR--HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCC--EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            56688888753211 11 11113344567789998754  4555433   57777777654  444321  122233447


Q ss_pred             EEEEcCCCCEEEEEcC-CCcEEEEECCC-Cc---EEEEEEecCc----------eEEEEeecCcccceeeeeeeeecccc
Q psy6984         198 TVTVSPDGSLCASGGK-DMNAMLWDLND-GK---HLHTLVHNDI----------ITALCFSPNRSFQKIKLDISRTLQKS  262 (380)
Q Consensus       198 ~~~~~~~~~~l~~~~~-d~~i~i~d~~~-~~---~~~~~~~~~~----------i~~~~~~~~~~~~~~~~~~~~~~~~~  262 (380)
                      -++++++|++++++.. .|.|.++.+.. |.   .+..+.|...          +-...+.|++.+..     ...+...
T Consensus        93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~-----v~DLG~D  167 (346)
T COG2706          93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV-----VPDLGTD  167 (346)
T ss_pred             EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE-----EeecCCc
Confidence            8999999999988876 48899998855 33   2344455444          56667778776543     2334566


Q ss_pred             ceEEEEcCCceeeeee---eccccceeEEEEeecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEeeCcccccc
Q psy6984         263 NLILYPINHGKMETPF---FSLFRDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ  338 (380)
Q Consensus       263 ~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (380)
                      .+.+|++..+++...-   ......-.-+.|+|++++.....+ +++|.+|......          ..+++++.-....
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~----------g~~~~lQ~i~tlP  237 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV----------GKFEELQTIDTLP  237 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC----------ceEEEeeeeccCc
Confidence            7888998877654221   122234567899999999887776 8999999875431          1112222111111


Q ss_pred             cCCCCCCceEEEEEecCCCEEEEEee-CCeEEEEEee
Q psy6984         339 STKADPPMCLSLAWSTDGQTLFAGYS-DNTIRVWQVS  374 (380)
Q Consensus       339 ~~~~~~~~~~~~~~s~dg~~l~~g~~-dg~v~iw~~~  374 (380)
                      ..-....+..++..+|||++|++..+ ...|-+|.|.
T Consensus       238 ~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            22233445678889999999997653 3367777665

>KOG4532|consensus

Probab=98.92  E-value=7e-07  Score=71.33  Aligned_cols=194  Identities=13%  Similarity=0.027  Sum_probs=127.9

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEc-cCCCEEEEEeCCCcEEEEECCCCceeeeecccCC-
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS-SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK-  107 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~-  107 (380)
                      .+||.|+.-|...+|.+...+...    +....|.+.|+-+.-. -..-.+..++.|..+++.++..+.....  .|.. 
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~----~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~  158 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHL----YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQN  158 (344)
T ss_pred             cEEEeccccceeeeecccCcccce----eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eeccc
Confidence            478999999999999876433211    1122333333322211 1123466778888888888765433322  2333 


Q ss_pred             -CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce
Q psy6984         108 -DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK  184 (380)
Q Consensus       108 -~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  184 (380)
                       .+.+++.++|++.+++.+....|..|.+.....  ........++.-.+..|+.+  ...++++..||++.+||++...
T Consensus       159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~--~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN--DLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC--cceEEEEecCCcEEEEEecccc
Confidence             377899999999999999999999997654322  22223333444556777764  3478999999999999998643


Q ss_pred             e-----eEeeeCCccceEEEEEcCCCC--EEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         185 L-----KINHSGHTGYLNTVTVSPDGS--LCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       185 ~-----~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      .     ....+.|.+.+..+.|++-|.  +|+..-.=+.+.+-|++++...+.+
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            2     223456889999999998665  3444555578899999888755443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.90  E-value=2.2e-06  Score=76.74  Aligned_cols=258  Identities=10%  Similarity=0.038  Sum_probs=143.2

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEE-EEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCC
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISD-IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK  107 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  107 (380)
                      +..++.++.+|.+..+|....+......   +.   ..+.+ ..+  .+..++.+..++.|..+|.++++.+.++.....
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~---~~---~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~  176 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAK---LS---SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP  176 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeec---cC---ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence            3567778888999999876543322111   11   11111 111  345778888899999999999988776644322


Q ss_pred             CeE-----EEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC------cEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984         108 DVL-----SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD------WVSCVRFSPNHQNPIIVSAGWDRMVK  176 (380)
Q Consensus       108 ~v~-----~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~s~~~d~~v~  176 (380)
                      ...     ....  .+..++.+..++.+..+|..++............      ....+.-.|--....++.++.++.+.
T Consensus       177 ~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       177 ALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVA  254 (377)
T ss_pred             ceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEE
Confidence            111     1111  1346777888888988887665543222111000      00000001100123577788899999


Q ss_pred             EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCc-eEEEEeecCcccceeeee
Q psy6984         177 VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDI-ITALCFSPNRSFQKIKLD  254 (380)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~-i~~~~~~~~~~~~~~~~~  254 (380)
                      .||..+++....... . ......  ..+..+..++.+|.+..+|..+++.+.... .... ..+.....        ..
T Consensus       255 a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g--------~~  322 (377)
T TIGR03300       255 ALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVG--------GY  322 (377)
T ss_pred             EEECCCCcEEEeecc-C-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEEC--------CE
Confidence            999998876654431 1 111122  245677788899999999999998775542 1111 11111111        11


Q ss_pred             eeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         255 ISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                      +.....++.+++++..+++....+.-+...+..--...+ +.|+.++.||.|+.|
T Consensus       323 l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       323 LVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence            222234567788888777766544333322222111223 457778899998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912|consensus

Probab=98.90  E-value=2.4e-06  Score=78.07  Aligned_cols=212  Identities=18%  Similarity=0.188  Sum_probs=137.5

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCC-----------CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEE
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKF-----------PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVL   72 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~-----------~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~   72 (380)
                      -+++++..+.-|...|+.+.|.|..           .-+||++.-.|.|.+||.....     ..-.+..|.+.+.+++|
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s-----~~~~l~~~~~~~qdl~W  117 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS-----VINWLSHSNDSVQDLCW  117 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh-----hhhhhcCCCcchhheee
Confidence            4567888899999999999998752           1257777888999999975432     22335667778888887


Q ss_pred             cc---CC-CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCC-------cce
Q psy6984          73 SS---DG-NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLA-------HCK  140 (380)
Q Consensus        73 ~~---~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~-------~~~  140 (380)
                      -+   +. ..|++-..-..|.+|+..+|+...++.-......|+.+.| |.+++..-+..|.+.+-+...       +..
T Consensus       118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~  197 (1062)
T KOG1912|consen  118 VPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKE  197 (1062)
T ss_pred             eeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCcee
Confidence            64   34 4555656667999999999999888765555667799988 667777777777777665321       112


Q ss_pred             EEEeeCCCcC----------------c---------EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccc
Q psy6984         141 FTIVEDGHSD----------------W---------VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGY  195 (380)
Q Consensus       141 ~~~~~~~~~~----------------~---------v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  195 (380)
                      ++ +...|++                .         .-..+|+|..++.+|++  ..+.+.++|++-........-..+.
T Consensus       198 ~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~--~prellv~dle~~~~l~vvpier~~  274 (1062)
T KOG1912|consen  198 FQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT--FPRELLVFDLEYECCLAVVPIERGG  274 (1062)
T ss_pred             EE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE--eccceEEEcchhhceeEEEEeccCC
Confidence            22 2222222                0         11245677766655544  3567889998754443333333333


Q ss_pred             eEEEEEcCCC--CEEEEEcCCCcEEEEECC
Q psy6984         196 LNTVTVSPDG--SLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       196 i~~~~~~~~~--~~l~~~~~d~~i~i~d~~  223 (380)
                      +.-+.+-|++  ..+...-.||.+.+|-.+
T Consensus       275 akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  275 AKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             cceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            3445555554  467777888888888543

>KOG0882|consensus

Probab=98.90  E-value=5.7e-08  Score=82.81  Aligned_cols=280  Identities=17%  Similarity=0.137  Sum_probs=170.9

Q ss_pred             CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeeecccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCC
Q psy6984          62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA---GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLA  137 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~  137 (380)
                      -|.+.|+-+..+. .+++.+++.||.++.|--..   -+.+..+..|...|.+++.+.++.++.|.+. |..++++|+..
T Consensus         7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            4777777776554 57999999999999997543   1344556778888999999999999999887 99999998654


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEE-EEEeCCCeEEEEeCCCc--eeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPII-VSAGWDRMVKVWNLTNC--KLKINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      -.....+....-....+...+++.....+ ++.-.++.+.++|-...  +......-|..+|..+.++|-+..+++....
T Consensus        86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            32221111111111223333343222223 33455688999987643  3333445688999999999999999999999


Q ss_pred             CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      |.|..|.....  .+     -+-..+.|.+..                .-.+|.+         ........++.|+|++
T Consensus       166 gmVEyWs~e~~--~q-----fPr~~l~~~~K~----------------eTdLy~f---------~K~Kt~pts~Efsp~g  213 (558)
T KOG0882|consen  166 GMVEYWSAEGP--FQ-----FPRTNLNFELKH----------------ETDLYGF---------PKAKTEPTSFEFSPDG  213 (558)
T ss_pred             ceeEeecCCCc--cc-----Cccccccccccc----------------cchhhcc---------cccccCccceEEcccc
Confidence            99999976520  00     000111222111                0011111         1122345689999999


Q ss_pred             CEEEEeeCCCcEEEEecccceeeeEeecccceEEE-----------ee--CcccccccCCCCCCceEEEEEecCCCEEEE
Q psy6984         295 RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVE-----------EL--RPDVVSQSTKADPPMCLSLAWSTDGQTLFA  361 (380)
Q Consensus       295 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  361 (380)
                      ..+.+-+.|..|+++...++.-++.+|.....-..           ++  +..+...........-..++|...|++|.-
T Consensus       214 ~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly  293 (558)
T KOG0882|consen  214 AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY  293 (558)
T ss_pred             CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe
Confidence            99999999999999998777665544422110000           00  000000011111222246778899999887


Q ss_pred             EeeCCeEEEEEeee
Q psy6984         362 GYSDNTIRVWQVSV  375 (380)
Q Consensus       362 g~~dg~v~iw~~~~  375 (380)
                      |+-=| |++.++.+
T Consensus       294 ~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  294 GTILG-IKVINLDT  306 (558)
T ss_pred             eccee-EEEEEeec
Confidence            77655 77777653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.89  E-value=7.5e-09  Score=59.10  Aligned_cols=39  Identities=28%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEee
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK   45 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~   45 (380)
                      +++..++.+|.+.|++|+++|+ +.+|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence            4678999999999999999998 78999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3914|consensus

Probab=98.89  E-value=4.8e-08  Score=82.07  Aligned_cols=160  Identities=19%  Similarity=0.275  Sum_probs=109.0

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCceeee---ecccCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCcceE
Q psy6984          68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDNRQIVSSSRD---KTIKLWNTLAHCKF  141 (380)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~s~~~d---~~v~iwd~~~~~~~  141 (380)
                      ..+..+++++++|.+..+....++++.......+   ...-...-+++.|..+......+-.-   ..+.+|.....+..
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~  145 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE  145 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence            3455778899999998888877777654432111   11222334455555555554444333   34444543333222


Q ss_pred             EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                      .  ..+|-.-+..++++|+++  +++++..|..||+-....... .....||...|..++.-++. .|++||.|+++++|
T Consensus       146 ~--~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  146 P--ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW  220 (390)
T ss_pred             h--hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence            2  247888899999999875  799999999999877655433 23445899999999987654 58999999999999


Q ss_pred             ECCCCcEEEEEE
Q psy6984         221 DLNDGKHLHTLV  232 (380)
Q Consensus       221 d~~~~~~~~~~~  232 (380)
                      |+.+|+.++++.
T Consensus       221 d~~sgk~L~t~d  232 (390)
T KOG3914|consen  221 DITSGKLLDTCD  232 (390)
T ss_pred             ecccCCcccccc
Confidence            999999887764

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.86  E-value=1.1e-07  Score=77.36  Aligned_cols=206  Identities=20%  Similarity=0.347  Sum_probs=134.8

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC-CCcccccccccCCC------------cceEEEEEccCC--CEEE
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD-TNYGVPQKRLKGHS------------HFISDIVLSSDG--NYAL   80 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~-~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~   80 (380)
                      ...|+++.+... +.++++|...|.|.++...... ..+.. ...+++|.            ..|..+.|..++  ..++
T Consensus        26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf-~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKF-FTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEeccc-cceEeecCCCceEEEeecccccccchhh-hhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            357899999876 6899999999999999754321 12211 12345554            345677776544  4677


Q ss_pred             EEeCCCcEEEEECCCCce------------------------------------------eeee-cccCCCeEEEEEeCC
Q psy6984          81 SGSWDKTLRLWDLAAGKT------------------------------------------TRRF-EDHTKDVLSVAFSVD  117 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~------------------------------------------~~~~-~~h~~~v~~~~~~~~  117 (380)
                      ..+.|.+|++|-+.....                                          .+.+ ..|..-+.+++|..|
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            888899999998743200                                          0011 346666788999888


Q ss_pred             CCEEEEEeCCCcEEEEeCCC-cceEEEeeC-CC-----cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee----
Q psy6984         118 NRQIVSSSRDKTIKLWNTLA-HCKFTIVED-GH-----SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----  186 (380)
Q Consensus       118 ~~~~~s~~~d~~v~iwd~~~-~~~~~~~~~-~~-----~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----  186 (380)
                      .+.++++ .|=.|.+|++.. ...+.++.. .|     ..-|++..|+|...+ ++.-.+..|.|++-|++...+.    
T Consensus       184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn-~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCN-VFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcc-eEEEecCCCcEEehhhhhhhhccCch
Confidence            8877765 566799998643 222222221 22     234778889987544 5666677899999999842111    


Q ss_pred             --E----------eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         187 --I----------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       187 --~----------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                        .          .+.+-...|..+.|+++|+++++-.. .++++||+...+
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence              0          01122356788999999999987766 489999987643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=7.2e-06  Score=73.80  Aligned_cols=207  Identities=12%  Similarity=0.046  Sum_probs=119.9

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCE-EEEEeCC---CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRD---KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      ..|.+-|...... +.+... +......|+|||+. ++..+.+   ..|.++|+.++.......  .........|+|++
T Consensus       169 ~~l~~~d~dg~~~-~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTYQ-KVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCce-eEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCC
Confidence            4566666544433 323223 36778999999985 6544433   457777876655444332  23335567899988


Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC-CC--cEEEEECCCCcEEEEEEecCc
Q psy6984         162 QNPIIVSAGW--DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK-DM--NAMLWDLNDGKHLHTLVHNDI  236 (380)
Q Consensus       162 ~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~  236 (380)
                      +. ++++.+.  +..|.++|+.+.+... +..+........|+|||+.++..+. .+  .|++.|+.+++..........
T Consensus       245 ~~-la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~  322 (419)
T PRK04043        245 SK-LLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN  322 (419)
T ss_pred             CE-EEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc
Confidence            65 4444333  4568888887765433 2222322334579999997766553 23  677788887765333222222


Q ss_pred             eEEEEeecCcccceeeeeeeee---ccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         237 ITALCFSPNRSFQKIKLDISRT---LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       237 i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                        ...|+|++....+.......   .....+.+.+...+... .+... .......|+|||+.++....
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEc
Confidence              34899998875543321110   01246777787766543 22222 22335889999998776654

>KOG0309|consensus

Probab=98.86  E-value=1.8e-08  Score=90.91  Aligned_cols=184  Identities=21%  Similarity=0.300  Sum_probs=122.6

Q ss_pred             eEEEEeCC--CCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCC-CEEEEEeCCCcEEEEECCC
Q psy6984          19 VTQIATNP--KFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG-NYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        19 v~~i~~~~--~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~   95 (380)
                      |-...|+|  .-+..+++.+. ....+|++.....+  ...-.+.+|...|+.+-|+|+. ..+++++.|..++.||+++
T Consensus        70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~--aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS  146 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSN--AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS  146 (1081)
T ss_pred             hcceecccCCCCceeEEecCc-chhhhhhhhcCCcc--ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence            33444554  33334555554 46678998653321  1223467999999999999864 6789999999999999976


Q ss_pred             Cce-eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          96 GKT-TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        96 ~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      -.. .-.+..-...-..++|+.....+++.+..+.+++||++.+........+|...++.+.|+.-. ...+.+++.|++
T Consensus       147 p~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~-~s~~~s~~~d~t  225 (1081)
T KOG0309|consen  147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK-YSEIMSSSNDGT  225 (1081)
T ss_pred             CCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh-hhhhcccCCCCc
Confidence            432 222222223456789987666677777888899999988766666666788888888887532 335789999999


Q ss_pred             EEEEeCCCceeeEee-eCCccceEEEEEcCCCC
Q psy6984         175 VKVWNLTNCKLKINH-SGHTGYLNTVTVSPDGS  206 (380)
Q Consensus       175 v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~  206 (380)
                      |+.||..+....... .....+|+.-.+-|-|+
T Consensus       226 vkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  226 VKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             eeeecccccccccceeccccCcceeccccccCc
Confidence            999998653322111 11234566666666443

>KOG4532|consensus

Probab=98.85  E-value=1.2e-06  Score=70.08  Aligned_cols=185  Identities=11%  Similarity=0.063  Sum_probs=123.8

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCc--ceEEEEEccCCCEEEEEeCCCcEEEEECCCC-ceeee--eccc
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH--FISDIVLSSDGNYALSGSWDKTLRLWDLAAG-KTTRR--FEDH  105 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~--~~~h  105 (380)
                      .+.-++.|.++++.+++.+....       .-|..  .+..+.+++|++++++.+....|..|.+... +.+..  ....
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~-------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t  202 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKF-------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT  202 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccc-------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence            46778889999999887543222       22322  2778999999999999999999999998653 22222  2233


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE----EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984         106 TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF----TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       106 ~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                      ...-.+.+|+.....+|+++.||++.|||++.....    ......|...++.+.|++.+.-.+|+-.-.-+.+.+-|++
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            445578899999999999999999999997643222    2233457888999999987655566655556789999998


Q ss_pred             CceeeEee-------eCCc-cceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         182 NCKLKINH-------SGHT-GYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       182 ~~~~~~~~-------~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      +.+.....       ..|. ..|....|+.++.-+.+.+.+ .+.=|++.
T Consensus       283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~  331 (344)
T KOG4532|consen  283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL  331 (344)
T ss_pred             cCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence            76432211       1122 236666666666555444443 23344443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.78  E-value=5.4e-05  Score=63.41  Aligned_cols=208  Identities=15%  Similarity=0.138  Sum_probs=130.9

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEc-cCCCEEEEEeCCCcEEEEECCCCcee
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS-SDGNYALSGSWDKTLRLWDLAAGKTT   99 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~   99 (380)
                      ...|.+..+.++++--..+.|..|+.......      .....  ....+++. +++ .|+.+... .+.++|..+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------~~~~~--~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE------VIDLP--GPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE------EEESS--SEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE------EEecC--CCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEE
Confidence            35677744556666667888888886543211      01111  15667777 665 55555554 4566699888654


Q ss_pred             eeecc-----cCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984         100 RRFED-----HTKDVLSVAFSVDNRQIVSSSRD--------KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus       100 ~~~~~-----h~~~v~~~~~~~~~~~~~s~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      ..+..     ......++++.|+|+..++....        +.+..++.. ........  .-...+.++|+|+++. ++
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~-ly  149 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKT-LY  149 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSE-EE
T ss_pred             EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchh-ee
Confidence            44332     23457889999999987776654        445556544 22222221  2344678999998652 45


Q ss_pred             EEEeCCCeEEEEeCCCcee-------eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEec-CceE
Q psy6984         167 VSAGWDRMVKVWNLTNCKL-------KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN-DIIT  238 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~  238 (380)
                      ++-+..+.|..+++.....       ........+....++++++|++.++....+.|.++|.. |+.+..+..+ ..++
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t  228 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPT  228 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred             ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence            5777788999998853211       11222223358889999999998888888999999987 8888877665 6788


Q ss_pred             EEEee
Q psy6984         239 ALCFS  243 (380)
Q Consensus       239 ~~~~~  243 (380)
                      +++|.
T Consensus       229 ~~~fg  233 (246)
T PF08450_consen  229 NCAFG  233 (246)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88884

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912|consensus

Probab=98.78  E-value=4.9e-07  Score=82.37  Aligned_cols=153  Identities=16%  Similarity=0.124  Sum_probs=113.7

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCC------------CEEEEEeCCCcEEEEe
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN------------RQIVSSSRDKTIKLWN  134 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~~~s~~~d~~v~iwd  134 (380)
                      -.++.|+|.| ++|-|+ ...|.+-|..+-+.++.++.|...|+.+.|.|..            -.+|++...|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            5678899877 455444 4589999999999999999999999999998732            2467778889999999


Q ss_pred             CCCcceEEEeeCCCcCcEEEEEEccCCC--CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC-CCCEEEEE
Q psy6984         135 TLAHCKFTIVEDGHSDWVSCVRFSPNHQ--NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP-DGSLCASG  211 (380)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  211 (380)
                      .........+ +.+.+.+..++|.+...  ..+|+.-..-.++.+|+..+++....+........++.++| |.+.+..-
T Consensus        96 ~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   96 FVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             ehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            7654433333 35667788888876542  23566656668999999999888776655555677799999 77777777


Q ss_pred             cCCCcEEEEEC
Q psy6984         212 GKDMNAMLWDL  222 (380)
Q Consensus       212 ~~d~~i~i~d~  222 (380)
                      +..|.+.+-+.
T Consensus       175 ~s~g~vl~~~~  185 (1062)
T KOG1912|consen  175 GSKGFVLSCKD  185 (1062)
T ss_pred             ccCceEEEEec
Confidence            77777776654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=2.7e-08  Score=56.74  Aligned_cols=38  Identities=37%  Similarity=0.666  Sum_probs=36.0

Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd  134 (380)
                      +++..+.+|..+|.+++|+|++..+++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.77  E-value=4e-05  Score=69.04  Aligned_cols=304  Identities=12%  Similarity=0.057  Sum_probs=155.1

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCccccccc---cc-CC-CcceE-EEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKR---LK-GH-SHFIS-DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF  102 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~---~~-~h-~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  102 (380)
                      +..++.++.+|.+.-+|....+.........   .. .. ...+. .+.  -++..++.++.++.++.+|..+|+.+.+.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE--EECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            3567777778888877765443322211110   00 00 00111 111  14567888889999999999999988776


Q ss_pred             cccCCCeEE-EEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc----EEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984         103 EDHTKDVLS-VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW----VSCVRFSPNHQNPIIVSAGWDRMVKV  177 (380)
Q Consensus       103 ~~h~~~v~~-~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~~~d~~v~i  177 (380)
                      .... .+.+ ...  .+..++.+..++.+..+|..++.............    .......    ...++.++.++.+..
T Consensus       147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~----~~~v~~~~~~g~v~a  219 (394)
T PRK11138        147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA----FGGAIVGGDNGRVSA  219 (394)
T ss_pred             cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE----CCEEEEEcCCCEEEE
Confidence            5432 2221 111  24466677788889999987766554332211000    0011111    124566777889998


Q ss_pred             EeCCCceeeEeeeCCc--c-----ceEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         178 WNLTNCKLKINHSGHT--G-----YLNTVTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       178 wd~~~~~~~~~~~~~~--~-----~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      +|..+++.........  .     ....+..+|  .+..+..++.++.+..+|..+++.+......... .+....+   
T Consensus       220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~---  295 (394)
T PRK11138        220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN-DFAVDGG---  295 (394)
T ss_pred             EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc-CcEEECC---
Confidence            9988876544322100  0     000111122  2456667778999999999999877654322211 1111111   


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccc-cceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceE
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLF-RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM  327 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~  327 (380)
                           .+.....++.++.++..+++..=...... ....+...  .+..|+.++.||.+.+.|..++..+...+....  
T Consensus       296 -----~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~--  366 (394)
T PRK11138        296 -----RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS--  366 (394)
T ss_pred             -----EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC--
Confidence                 01111234455555655554321110000 11111111  356777888999999887655543322211100  


Q ss_pred             EEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         328 VEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                                       ........  .+..|+.++.||.|..++.
T Consensus       367 -----------------~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        367 -----------------GFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             -----------------cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence                             00001111  2446777899999887764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.76  E-value=7.6e-05  Score=62.52  Aligned_cols=188  Identities=14%  Similarity=0.090  Sum_probs=114.6

Q ss_pred             EEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc-cCCCCCEEEEEeCCCeEEEEeCCCceeeEe
Q psy6984         111 SVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS-PNHQNPIIVSAGWDRMVKVWNLTNCKLKIN  188 (380)
Q Consensus       111 ~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  188 (380)
                      ++.|.+ ++.++++-...+.|..|+..+......... .   ...+++. ++  + .|+.+... .+.++|+.+.+....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-~---~~G~~~~~~~--g-~l~v~~~~-~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-G---PNGMAFDRPD--G-RLYVADSG-GIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-S---EEEEEEECTT--S-EEEEEETT-CEEEEETTTTEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-C---CceEEEEccC--C-EEEEEEcC-ceEEEecCCCcEEEE
Confidence            467887 666777777888999998776654333221 1   5666776 44  2 45555544 455669888755433


Q ss_pred             eeC-----CccceEEEEEcCCCCEEEEEcCC--------CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeee
Q psy6984         189 HSG-----HTGYLNTVTVSPDGSLCASGGKD--------MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDI  255 (380)
Q Consensus       189 ~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  255 (380)
                      ...     ....++.++++|+|++.++....        +.+..++.. ++.......-...+.++|+|++....+    
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv----  150 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYV----  150 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEE----
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheee----
Confidence            221     34568899999999987776543        567778877 554444445566789999999764322    


Q ss_pred             eeeccccceEEEEcCCce--ee--eeeeccc---cceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         256 SRTLQKSNLILYPINHGK--ME--TPFFSLF---RDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~--~~--~~~~~~~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                       .......++.+++....  ..  ..+....   +..-.+++..+|+..++.-..+.|.+++..
T Consensus       151 -~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  151 -ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             -EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             -cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence             12234556666664321  11  1121211   124578899999988877778888888743

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695|consensus

Probab=98.64  E-value=1.3e-07  Score=78.13  Aligned_cols=154  Identities=16%  Similarity=0.262  Sum_probs=111.1

Q ss_pred             EEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEeeCCCcCcEEEEE
Q psy6984          80 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIVEDGHSDWVSCVR  156 (380)
Q Consensus        80 ~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~  156 (380)
                      ++.+.+..|-+-|+.++-.. .+. ....|.++.|...+..+..|++.|.|...|++....   ......-|...|+|+.
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            55566677888888776332 232 567789999988899999999999999999865311   1111124667788877


Q ss_pred             EccCCCCCEEEEEeCCCeEEEEeCCCcee---eEeeeCCccc--eEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         157 FSPNHQNPIIVSAGWDRMVKVWNLTNCKL---KINHSGHTGY--LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       157 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      ..... ..+|++.+.+|.|++||++--+.   +..+.||...  -..+-+++....++++++|-..+||.++.+..+.++
T Consensus       306 ~Lq~s-~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  306 ILQFS-QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhccc-cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            65522 33788889999999999987655   6677777432  223445677778889999999999999999888777


Q ss_pred             EecCc
Q psy6984         232 VHNDI  236 (380)
Q Consensus       232 ~~~~~  236 (380)
                      ..+..
T Consensus       385 pf~~s  389 (425)
T KOG2695|consen  385 PFPYS  389 (425)
T ss_pred             CCCCc
Confidence            65443

>KOG4714|consensus

Probab=98.63  E-value=6.3e-07  Score=71.25  Aligned_cols=149  Identities=15%  Similarity=0.197  Sum_probs=96.5

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-----CCcEEEEECCCCceeeeec
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-----DKTLRLWDLAAGKTTRRFE  103 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~  103 (380)
                      .+.++++..||.+.+.+.+..   +....+....|.+. .+.++-..++.+.++..     -+..+.|++..-+......
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             CCceEecCCCceEEEEechHH---Hhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence            467999999999999987642   11111111122221 12223334555554432     2356677765443333222


Q ss_pred             ccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC
Q psy6984         104 DHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       104 ~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~  182 (380)
                      .....|.+++-+|..+ .++.|+.||.+.+||.+...-.......|...++-+-|+|.... .|++++.||.+..||..+
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~-~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE-HLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-heeEecCCCcEEEEcCCC
Confidence            2334588888888655 55688999999999987654444445678889999999997654 588999999999999874

>KOG2695|consensus

Probab=98.63  E-value=1.9e-07  Score=77.06  Aligned_cols=151  Identities=15%  Similarity=0.215  Sum_probs=105.0

Q ss_pred             EEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc----eeeeecccCCC
Q psy6984          33 LSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK----TTRRFEDHTKD  108 (380)
Q Consensus        33 ~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~h~~~  108 (380)
                      ++.+-+-.|-+=++...-.      ..+. -...|.++.|...++++..|..+|.|..+|++.+.    -....--|..+
T Consensus       228 fs~G~sqqv~L~nvetg~~------qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccc------cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence            4444455666655543211      1122 44567788898889999999999999999997641    11222348888


Q ss_pred             eEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee
Q psy6984         109 VLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL  185 (380)
Q Consensus       109 v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  185 (380)
                      |+++..-. ++++|.+.+.+|+|++||.+.-+.  .....++|.+.-.-+-++-+..+..+++++.|...|+|.++.+.+
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence            99888655 788999999999999999764332  234456776544444444455667889999999999999998877


Q ss_pred             eEeee
Q psy6984         186 KINHS  190 (380)
Q Consensus       186 ~~~~~  190 (380)
                      ....+
T Consensus       381 l~tip  385 (425)
T KOG2695|consen  381 LCTIP  385 (425)
T ss_pred             eeccC
Confidence            65544

>KOG3617|consensus

Probab=98.62  E-value=3.7e-06  Score=77.71  Aligned_cols=187  Identities=16%  Similarity=0.199  Sum_probs=115.7

Q ss_pred             ceEEEEeCCCCCCeEEEee----CCCeEEEeecCCCCCCcccccc--cccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          18 WVTQIATNPKFPDTILSCS----RDNTLIIWKLTRDDTNYGVPQK--RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~----~dg~v~vw~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      .-+-++|||..| +|+.++    ..|+|.+|--..+      |..  ...-|   +++++|+|..-.|+.|-.-|.+.+|
T Consensus        17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfadtGE------Pqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~   86 (1416)
T KOG3617|consen   17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFADTGE------PQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQ   86 (1416)
T ss_pred             cccccccCCCCc-eeEEEEecCCCCceEEEEecCCC------CCccccccee---hhhhccChHHHHHhhccccceeEEE
Confidence            334456999854 666654    5689999842211      211  11222   5679999998888999999999999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE---EeeCCCcC--cEEEEEEccCCCCC--
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT---IVEDGHSD--WVSCVRFSPNHQNP--  164 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~--~v~~~~~~~~~~~~--  164 (380)
                      ...+.+.......|+.+|..+.|||+|..++++..-|.+.+|.........   +......+  -.+|-++.+++...  
T Consensus        87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~  166 (1416)
T KOG3617|consen   87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFK  166 (1416)
T ss_pred             ecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhh
Confidence            988877776677899999999999999999999999999999743111111   00000111  13445555542211  


Q ss_pred             --EEEEEeCCCeEE-EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         165 --IIVSAGWDRMVK-VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       165 --~l~s~~~d~~v~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                        ..+..+.+..+- .++.+....... ..|.       -.|+|..+..++.+|.|+..|-
T Consensus       167 laKaaVtgDe~alD~~fnwk~~~a~rs-~~ks-------gv~~g~~F~~~~~~GtVyyvdq  219 (1416)
T KOG3617|consen  167 LAKAAVTGDESALDEPFNWKESLAERS-DEKS-------GVPKGTEFLFAGKSGTVYYVDQ  219 (1416)
T ss_pred             hhhhhccCchhhhcccccCccchhhcc-cccc-------CCCCCcEEEEEcCCceEEEEcC
Confidence              122333343333 333321110000 0111       1578889999999999998884

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.59  E-value=9.9e-05  Score=61.47  Aligned_cols=215  Identities=13%  Similarity=0.036  Sum_probs=125.0

Q ss_pred             CCcEEEEECCCCceeeeeccc--CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDH--TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      +|.|..||..+|+.+.+..--  .....+. ..+++..+++++.++.+..||..++...........-.. .....    
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~----   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-APVVD----   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-GEEEE----
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-eeeec----
Confidence            688999999999988877431  1222211 234577788889999999999877665544332111001 01111    


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEee-eCCc---cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCce-
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINH-SGHT---GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII-  237 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i-  237 (380)
                      ...++.+..++.+..+|..+++..... ....   ...........+..++.+..++.+..+|+.+|+.+......... 
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            224666667889999999998877663 3221   11122223334778888888999999999999988777543211 


Q ss_pred             -----------EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984         238 -----------TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI  306 (380)
Q Consensus       238 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  306 (380)
                                 ..+.+. ++       .+.....++.+..++..+++..- ... ...... ...+++..|+.++.++.|
T Consensus       156 ~~~~~~~~~~~~~~~~~-~~-------~v~~~~~~g~~~~~d~~tg~~~w-~~~-~~~~~~-~~~~~~~~l~~~~~~~~l  224 (238)
T PF13360_consen  156 SSPISSFSDINGSPVIS-DG-------RVYVSSGDGRVVAVDLATGEKLW-SKP-ISGIYS-LPSVDGGTLYVTSSDGRL  224 (238)
T ss_dssp             S--EEEETTEEEEEECC-TT-------EEEEECCTSSEEEEETTTTEEEE-EEC-SS-ECE-CEECCCTEEEEEETTTEE
T ss_pred             CcceeeecccccceEEE-CC-------EEEEEcCCCeEEEEECCCCCEEE-Eec-CCCccC-CceeeCCEEEEEeCCCEE
Confidence                       111111 11       11111222333334666666331 111 222222 145678888888899999


Q ss_pred             EEEeccccee
Q psy6984         307 KLWNTLAHCK  316 (380)
Q Consensus       307 ~iw~~~~~~~  316 (380)
                      .+||..++..
T Consensus       225 ~~~d~~tG~~  234 (238)
T PF13360_consen  225 YALDLKTGKV  234 (238)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEECCCCCE
Confidence            9998765543

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.59  E-value=2.2e-05  Score=63.85  Aligned_cols=198  Identities=14%  Similarity=0.187  Sum_probs=110.6

Q ss_pred             EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccc-cc-CCCcceEEEEEccC------CCEEEEEeCCCcEEEE
Q psy6984          20 TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR-LK-GHSHFISDIVLSSD------GNYALSGSWDKTLRLW   91 (380)
Q Consensus        20 ~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~-~~-~h~~~v~~~~~~~~------~~~l~s~~~d~~i~vw   91 (380)
                      ..++|+|+ ..+||-+...|+|+++|+.... .+.+++.. .. .-...|..+.|.+.      ...|++-..+|.++-|
T Consensus        47 Rkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   47 RKLAWSPD-CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             eEEEECCC-CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            46889988 6789999999999999987532 23333322 11 12344666666432      1246666677777766


Q ss_pred             ECCCC-----ceeee--ecc-cCCCeEEEEEeCCCCEEEEEeCCCc-EEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          92 DLAAG-----KTTRR--FED-HTKDVLSVAFSVDNRQIVSSSRDKT-IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        92 d~~~~-----~~~~~--~~~-h~~~v~~~~~~~~~~~~~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      -+..+     +....  +.. +...|.++.++|..++|+.|+.... -..+.            +....+++-++-.+.+
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~P  192 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDSP  192 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc------------ccccCceEEEEcCCCC
Confidence            65322     11222  222 4667999999999888887765321 00000            0011111111111111


Q ss_pred             CCEEEEEeCCC------eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         163 NPIIVSAGWDR------MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       163 ~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      ....++...|+      +-.+|.+-+.+...........|..+.++|||..||+...+|.|.+|++.+-+.....
T Consensus       193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            11111111111      1233433333332222234567999999999999999999999999999876555443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.56  E-value=4.7e-06  Score=74.30  Aligned_cols=122  Identities=17%  Similarity=0.310  Sum_probs=78.5

Q ss_pred             ecCceEEEEeecCcccceeeeeeeeec---cccceEEEEcCCceeeee---eeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTL---QKSNLILYPINHGKMETP---FFSLFRDVLSVAFSVDNRQIVSSSRDKTI  306 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  306 (380)
                      .+...-.+.|+...+++....+.....   ..-...+|++...++...   -......+.+++++|+...|+.|+.||+|
T Consensus       204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence            344445666665555544433322111   112335666665555432   23455679999999999999999999999


Q ss_pred             EEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         307 KLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       307 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      .+||...+...         .   .+.          .-....++|+|+|.++++|+.-|.+++||+.+.
T Consensus       284 iLyD~~~~~t~---------~---~ka----------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRGVTL---------L---AKA----------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCCeee---------e---eee----------cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99986332110         0   010          111346899999999999999999999998653

>KOG1832|consensus

Probab=98.55  E-value=4.2e-08  Score=90.45  Aligned_cols=162  Identities=20%  Similarity=0.303  Sum_probs=116.8

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--TIKLWNT  135 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--~v~iwd~  135 (380)
                      ..+..|....+|++|+.+.++|+.|+..|.|++|++.+|.....+.+|..+|+-+.-+.||..+++.+.-.  ...+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            34667888899999999999999999999999999999999999999999999999999999877655433  4678986


Q ss_pred             CCcceEEEeeCCCc-CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-eeC---CccceEEEEEcCCCCEEEE
Q psy6984         136 LAHCKFTIVEDGHS-DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSG---HTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       136 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~---~~~~i~~~~~~~~~~~l~~  210 (380)
                      .....     ..|+ +.-.++.|+...+...+-+..  ....+||+.++..... +.+   ....-+...|+|+..+++ 
T Consensus      1175 ~s~~~-----~~Hsf~ed~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1175 SSTGG-----PRHSFDEDKAVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             ccccC-----ccccccccceeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            43111     1121 223577887654443333333  5678999988765433 211   122336778999988876 


Q ss_pred             EcCCCcEEEEECCCCcEEEEE
Q psy6984         211 GGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       211 ~~~d~~i~i~d~~~~~~~~~~  231 (380)
                        .||  .+||++..+.++.+
T Consensus      1247 --ndG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred             --eCc--eeeeeccHHHHhhh
Confidence              444  48999988777666

>KOG1920|consensus

Probab=98.55  E-value=6.2e-05  Score=72.63  Aligned_cols=229  Identities=15%  Similarity=0.197  Sum_probs=133.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC----CCcce
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT----LAHCK  140 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~----~~~~~  140 (380)
                      +.|.++.|..+.+.++.+...|.|.+-|..+.... ....-...|.+++|+||++.++-.+...++.+-+-    .....
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            57899999999999999999999999987664332 22334567999999999999998888887766431    11111


Q ss_pred             EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee-----E--eeeC---CccceEEEEEcCCCCEEEE
Q psy6984         141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK-----I--NHSG---HTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----~--~~~~---~~~~i~~~~~~~~~~~l~~  210 (380)
                      + ....              .....++++|+.+.=.-+.-..++..     .  ...+   ....=..+.|-.||+++|+
T Consensus       148 L-~~d~--------------~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAV  212 (1265)
T KOG1920|consen  148 L-DADD--------------ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAV  212 (1265)
T ss_pred             c-cccc--------------ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEE
Confidence            1 0000              00112333333332111211111100     0  0000   1112245889999999988


Q ss_pred             E-----cCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC---ceeeeeeecc
Q psy6984         211 G-----GKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH---GKMETPFFSL  281 (380)
Q Consensus       211 ~-----~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  281 (380)
                      .     ...+.+++||.+ |..-..- .....-.+++|-|.+...+.   +.....++.+.+|.-+.   +....++..-
T Consensus       213 s~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~---iq~~~sd~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  213 SFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAA---IQCKTSDSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             EEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEee---eeecCCCCcEEEEecCCccccccccCCccc
Confidence            3     233899999976 3322111 12333467888887764322   22233444566666442   3323333333


Q ss_pred             ccceeEEEEeecCCEEEE---eeCCCcEEEEeccc
Q psy6984         282 FRDVLSVAFSVDNRQIVS---SSRDKTIKLWNTLA  313 (380)
Q Consensus       282 ~~~v~~~~~s~~~~~l~s---~~~dg~v~iw~~~~  313 (380)
                      ..++..++|+.++..|+.   ......|++|.+..
T Consensus       289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             ccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            344889999999999987   55555699997644

>KOG1275|consensus

Probab=98.54  E-value=2.5e-06  Score=79.29  Aligned_cols=181  Identities=14%  Similarity=0.234  Sum_probs=121.7

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      ++.++.|+-...+...|+.......   ...+.  ...|.  ..-.+++++.+|...|.|.+-|.++.+.+.++..|.+.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~--a~~v~--imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s  219 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETR---TTNVS--ASGVT--IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS  219 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeee---eeecc--CCceE--EEEecCcEEEeecccceEEeecCCcCceeeeeeccccc
Confidence            4456666666677777765432211   00011  11232  23446899999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCEEEEEeC---------CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         109 VLSVAFSVDNRQIVSSSR---------DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       109 v~~~~~~~~~~~~~s~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                      |.++.  -.|+.|++++.         |..|++||++.-..+.-+.-. -+ -.-++|+|.-.. .++.++..|...+-|
T Consensus       220 iSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~-P~flrf~Psl~t-~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  220 ISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YG-PQFLRFHPSLTT-RLAVTSQSGQFQFVD  294 (1118)
T ss_pred             eeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cC-chhhhhcccccc-eEEEEecccceeecc
Confidence            87654  56889998874         567899997654333222111 11 123677776544 566677788888888


Q ss_pred             ---CCCceeeE-eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         180 ---LTNCKLKI-NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       180 ---~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                         +.+..... ........+.++.+++++..++.|..+|.|.+|.
T Consensus       295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence               44432222 2222334589999999999999999999999996

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.54  E-value=0.00019  Score=60.16  Aligned_cols=204  Identities=17%  Similarity=0.277  Sum_probs=120.0

Q ss_pred             EEEEeCCCCCCeEEEeeCCCe-EEEeecCCCCCCccc---ccccccCCCcceEEEEEccCCCEEEEEe-----CCCcEEE
Q psy6984          20 TQIATNPKFPDTILSCSRDNT-LIIWKLTRDDTNYGV---PQKRLKGHSHFISDIVLSSDGNYALSGS-----WDKTLRL   90 (380)
Q Consensus        20 ~~i~~~~~~~~~l~t~~~dg~-v~vw~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~-----~d~~i~v   90 (380)
                      ..++.+|..+..++-+-.-|+ ..+||+........+   +-..+.||      -+|++||++|++.=     ..|.|-|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgV   81 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGV   81 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEE
Confidence            345566654555555554443 346666543222111   11235566      67999999999864     3478999


Q ss_pred             EECC-CCceeeeecccCCCeEEEEEeCCCCEEEEEeC-------CCcEEE-----------EeCCCcceEEEee---CCC
Q psy6984          91 WDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-------DKTIKL-----------WNTLAHCKFTIVE---DGH  148 (380)
Q Consensus        91 wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-------d~~v~i-----------wd~~~~~~~~~~~---~~~  148 (380)
                      ||.. +-+.+.++..|.-....+.+.|||+.|+.+-.       .|..++           -|..++..+....   .-|
T Consensus        82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH  161 (305)
T ss_pred             EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence            9998 55667778777767778899999987776532       122332           2333333333221   235


Q ss_pred             cCcEEEEEEccCCCCCEEEEEeCCCe-------EEEEeCCCceeeEee-----eCCccceEEEEEcCCCCEEEEEc-CCC
Q psy6984         149 SDWVSCVRFSPNHQNPIIVSAGWDRM-------VKVWNLTNCKLKINH-----SGHTGYLNTVTVSPDGSLCASGG-KDM  215 (380)
Q Consensus       149 ~~~v~~~~~~~~~~~~~l~s~~~d~~-------v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~-~d~  215 (380)
                      ...+..+++.+++.  +++..-+.+.       |-+++....-.....     ..-...+-+|++++++.++++.+ ..+
T Consensus       162 ~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  162 QLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             ccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence            55688888877643  3333333322       223332221101111     12246789999999998876655 568


Q ss_pred             cEEEEECCCCcEEEEE
Q psy6984         216 NAMLWDLNDGKHLHTL  231 (380)
Q Consensus       216 ~i~i~d~~~~~~~~~~  231 (380)
                      .+.+||..+++.+...
T Consensus       240 ~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  240 RVAVWDAATGRLLGSV  255 (305)
T ss_pred             EEEEEECCCCCEeecc
Confidence            8999999998876544

>KOG1645|consensus

Probab=98.50  E-value=1.1e-05  Score=68.32  Aligned_cols=94  Identities=14%  Similarity=0.137  Sum_probs=72.5

Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      +++.+..+-+..+.+..|...|.+++|+|..+ ++..++.+..|+|.|+.+.+...... .+ ..+++.+|.-+. ..++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde-~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDE-RHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCC-ccee
Confidence            44555444445555566778899999999887 67789999999999998876654443 33 568899998876 4588


Q ss_pred             EEEeCCCeEEEEeCCCce
Q psy6984         167 VSAGWDRMVKVWNLTNCK  184 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~  184 (380)
                      +.|-.+|.|.+||++..+
T Consensus       252 YaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EEeccCceEEEEEccCCC
Confidence            999999999999998653

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.42  E-value=1.5e-05  Score=71.18  Aligned_cols=116  Identities=15%  Similarity=0.103  Sum_probs=80.1

Q ss_pred             eEEEEeCCCCCCeEEEe----eCCCeEE----EeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          19 VTQIATNPKFPDTILSC----SRDNTLI----IWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~----~~dg~v~----vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      ..++.|+...+..+.|.    +.+|.+.    +|++...+.. .+.. ........|.+++++|+.+.|+.|..||+|.+
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsv-tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSV-TSIPLPSQVICCARSPSEDKLVLGCEDGSIIL  285 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEE-EEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence            35566766556667664    3344333    5555433211 1111 11235567899999999999999999999999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      ||...+.....  ...-.++.++|+|+|..+++|+.-|.+++||+.-.
T Consensus       286 yD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  286 YDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99876643322  33445688999999999999999999999996543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.39  E-value=0.00016  Score=60.21  Aligned_cols=187  Identities=16%  Similarity=0.107  Sum_probs=113.3

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-cccC-
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-EDHT-  106 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~-  106 (380)
                      +..+++++.++.+..||...........   +.+.....    ...++..++.+..++.|+.+|..+|+.+.+. .... 
T Consensus        36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~---~~~~~~~~----~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~  108 (238)
T PF13360_consen   36 GGRVYVASGDGNLYALDAKTGKVLWRFD---LPGPISGA----PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP  108 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSEEEEEEE---CSSCGGSG----EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEee---ccccccce----eeecccccccccceeeeEecccCCcceeeeecccccc
Confidence            4567777889999999975443222111   11110011    1234567777778889999999999988873 3221 


Q ss_pred             --CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC---c------E-EEEEEccCCCCCEEEEEeCCCe
Q psy6984         107 --KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD---W------V-SCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus       107 --~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                        ..........++..++.+..++.+..+|..++............   .      + ..+.+. +  . .++.++.++.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~v~~~~~~g~  184 (238)
T PF13360_consen  109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D--G-RVYVSSGDGR  184 (238)
T ss_dssp             TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T--T-EEEEECCTSS
T ss_pred             ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C--C-EEEEEcCCCe
Confidence              11122333334888899998999999998877665444332211   1      1 222222 1  2 4666666664


Q ss_pred             -EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Q psy6984         175 -VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT  230 (380)
Q Consensus       175 -v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  230 (380)
                       +.+ |+.+++......  ...+..+ ..+.+..++.++.++.+..||+++++.+..
T Consensus       185 ~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  185 VVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             EEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence             555 999988654333  2222221 356777777777999999999999987643

...

>KOG2066|consensus

Probab=98.34  E-value=2.3e-05  Score=72.21  Aligned_cols=140  Identities=19%  Similarity=0.287  Sum_probs=96.3

Q ss_pred             CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-----CCEEEEEeCCCcEEEEECCC--Cceee
Q psy6984          28 FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-----GNYALSGSWDKTLRLWDLAA--GKTTR  100 (380)
Q Consensus        28 ~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~~~d~~i~vwd~~~--~~~~~  100 (380)
                      .+++++|||.||+|.+--+..++....      .....++..++++|+     .+++++||.-| +.++.-+-  .+...
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v  154 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQ------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV  154 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCcccee------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence            378999999999999987765443221      123356889999997     57899999988 88876432  12222


Q ss_pred             eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-----cEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984         101 RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD-----WVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus       101 ~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      .+..-.++|.++.|.  |.++|-++.+| |++||+..++.+..+...+..     .-..+.|.++.   .| .-|+..+|
T Consensus       155 ~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~---~L-VIGW~d~v  227 (846)
T KOG2066|consen  155 VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED---RL-VIGWGDSV  227 (846)
T ss_pred             eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC---eE-EEecCCeE
Confidence            344556899999996  77888887777 999999888777666554422     12235565542   23 34567789


Q ss_pred             EEEeCC
Q psy6984         176 KVWNLT  181 (380)
Q Consensus       176 ~iwd~~  181 (380)
                      ++..++
T Consensus       228 ~i~~I~  233 (846)
T KOG2066|consen  228 KICSIK  233 (846)
T ss_pred             EEEEEe
Confidence            988876

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.34  E-value=0.0015  Score=56.64  Aligned_cols=306  Identities=16%  Similarity=0.185  Sum_probs=123.6

Q ss_pred             CCCcceEEEEEccCCCEEEEEeC-C--CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          62 GHSHFISDIVLSSDGNYALSGSW-D--KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~~~-d--~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      .|..+.+.=+|.+||++|+-++. |  .++++.|+.+++..+-..+-........++|+++.++-...++.++--|+.+.
T Consensus        33 ~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~  112 (386)
T PF14583_consen   33 SHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTL  112 (386)
T ss_dssp             EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT-
T ss_pred             ccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcC
Confidence            34445555678899987766554 4  57888899988777654432222334556788888776666677877787665


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC---C-------------------CeEEEEeCCCceeeEeeeCCccce
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW---D-------------------RMVKVWNLTNCKLKINHSGHTGYL  196 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d-------------------~~v~iwd~~~~~~~~~~~~~~~~i  196 (380)
                      ... .+..-...++....+..+.....++..-.   |                   ..|.-.|+.+++....+. ....+
T Consensus       113 e~~-~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wl  190 (386)
T PF14583_consen  113 EER-VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWL  190 (386)
T ss_dssp             -EE-EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-E
T ss_pred             cEE-EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccc
Confidence            443 23333455555555544333323321110   0                   123334555555433332 24456


Q ss_pred             EEEEEcCCCCEEEEEcC-------CCcEEEEECCCCcEEEEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEE
Q psy6984         197 NTVTVSPDGSLCASGGK-------DMNAMLWDLNDGKHLHTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLIL  266 (380)
Q Consensus       197 ~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (380)
                      .-+.++|....+++=+.       |.+|.+.+... .....+.   ..+.+.---|.|+++...+.... ......-+.-
T Consensus       191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~-~~~~~~~i~~  268 (386)
T PF14583_consen  191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT-PGGQDFWIAG  268 (386)
T ss_dssp             EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEE-TTT--EEEEE
T ss_pred             cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCCcccccccccCCCCEEEEEeec-CCCCceEEEe
Confidence            77889996555444332       33555555433 3232221   12234444578888654443211 1111222333


Q ss_pred             EEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE-----EecccceeeeEeecccceEEEeeCcc----ccc
Q psy6984         267 YPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL-----WNTLAHCKFTIVDLETKKMVEELRPD----VVS  337 (380)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i-----w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  337 (380)
                      ++..+++... +... ..-.-+--++||++++-=+.|.-+.+     |.+....-+.+++.+......-.+.+    ...
T Consensus       269 ~d~~t~~~~~-~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~  346 (386)
T PF14583_consen  269 YDPDTGERRR-LMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLD  346 (386)
T ss_dssp             E-TTT--EEE-EEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BT
T ss_pred             eCCCCCCceE-EEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeec
Confidence            4444443221 1111 11222344678887765333422221     11222223334444433321111100    000


Q ss_pred             -ccCCCCCCceEEEEEecCCCEEE-EEeeCCeEEEEEeeeec
Q psy6984         338 -QSTKADPPMCLSLAWSTDGQTLF-AGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       338 -~~~~~~~~~~~~~~~s~dg~~l~-~g~~dg~v~iw~~~~~~  377 (380)
                       .....|    ....|||||++|+ +....|...||-++++.
T Consensus       347 ~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~v~i~~  384 (386)
T PF14583_consen  347 GDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYLVEIPD  384 (386)
T ss_dssp             TBSSTT--------EE-TTSSEEEEEE-TTSS-EEEEEE--C
T ss_pred             CCCccCC----CCCccCCCCCEEEEECCCCCCccEEEEeCcc
Confidence             000112    2468999999976 55579999999888765

>KOG2114|consensus

Probab=98.33  E-value=0.00023  Score=66.38  Aligned_cols=202  Identities=12%  Similarity=0.165  Sum_probs=126.4

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcc-eEEEEEccCCCEEEEEeCCCc-----EEEE
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF-ISDIVLSSDGNYALSGSWDKT-----LRLW   91 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~~-----i~vw   91 (380)
                      .|+++.-  . +..++-|+.+|.|.+.+-.-.      ....++.+... |..+....+.++|++.+.|+.     |+||
T Consensus        27 ~isc~~s--~-~~~vvigt~~G~V~~Ln~s~~------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   27 AISCCSS--S-TGSVVIGTADGRVVILNSSFQ------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             ceeEEcC--C-CceEEEeeccccEEEecccce------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence            5665543  2 568999999998887753211      01334555555 444444455578888887754     8999


Q ss_pred             ECCCC---c---ee---eee----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC---CCcceEEEeeCCCcCcEEEE
Q psy6984          92 DLAAG---K---TT---RRF----EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT---LAHCKFTIVEDGHSDWVSCV  155 (380)
Q Consensus        92 d~~~~---~---~~---~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~---~~~~~~~~~~~~~~~~v~~~  155 (380)
                      +++..   +   +.   +.+    .....++.+++.+.+-+.+|.|-.+|.|..+.-   +...........-..+|+.+
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL  177 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL  177 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence            98642   2   22   111    123456788999999999999999999998852   11111122222335679999


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      .+..++...++++.  -..|.+|.+....+... ...|....+|..+++....++.++. ..+.+|+.....+...+
T Consensus       178 ~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  178 ALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             EEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeee
Confidence            99877665333332  35788998875442333 4556678899888886664555544 37889987655444444

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.32  E-value=0.00059  Score=62.81  Aligned_cols=179  Identities=15%  Similarity=0.181  Sum_probs=94.0

Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeec-------
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSP-------  244 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~-------  244 (380)
                      .+.+.+.|..+.+......- .+....++++|+|+++++.+.+.       +.+..+..+...+.-..+.|++       
T Consensus       214 ~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d~~vvfni~~iea~v  285 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERDWVVVFNIARIEEAV  285 (635)
T ss_pred             eEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCc-------ccCcceeeeccccCceEEEEchHHHHHhh
Confidence            44566666666554433321 12345577888999888776422       1122222221111112233333       


Q ss_pred             -CcccceeeeeeeeeccccceEEEEcCC----ceeeeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEecccceeee
Q psy6984         245 -NRSFQKIKLDISRTLQKSNLILYPINH----GKMETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       245 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~  318 (380)
                       ++++..        ...+.+.+++..+    +...............+.++|||++++.++ .+.+|.+.|+.+.....
T Consensus       286 kdGK~~~--------V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        286 KAGKFKT--------IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hCCCEEE--------ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence             222211        1234466666665    333344445556778899999999977655 48899999875432210


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                        +  . +    +.+.........-...-+..+|.++|....+-.-|..|..|++..
T Consensus       358 --~--~-~----~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        358 --D--G-K----IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             --h--c-c----CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              0  0 0    000000000000011123568999998777777899999999864

>KOG2066|consensus

Probab=98.30  E-value=7.3e-05  Score=69.02  Aligned_cols=192  Identities=16%  Similarity=0.222  Sum_probs=117.7

Q ss_pred             CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      +.+.|.+++.    .+|+-|..+|.|++.+.....  .....|...      +.+|+++++++.||.+.|..+-+.+...
T Consensus        40 D~is~~av~~----~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   40 DAISCCAVHD----KFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hHHHHHHhhc----ceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            3455666553    267788899999999876432  222233332      6689999999999999999999999888


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC--ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH--GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                      ....+-++.+++++|+...+....-+..  +..+++++.-+-  .+....+....++|.++.|.  |.++|-++.+| |+
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~G--G~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~  182 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSG--GMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK  182 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeec--CcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence            8889999999999998433322211111  112244443211  11112344556789999995  77888776555 78


Q ss_pred             EEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++|+..++.+..+.....           ..  +... .-..+.|.++.+++. |=.| +|+|..+.
T Consensus       183 vyd~~~~~~l~~i~~p~~-----------~~--R~e~-fpphl~W~~~~~LVI-GW~d-~v~i~~I~  233 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQ-----------SV--RPEL-FPPHLHWQDEDRLVI-GWGD-SVKICSIK  233 (846)
T ss_pred             EEeccccceeeccCCCCC-----------CC--Cccc-CCCceEecCCCeEEE-ecCC-eEEEEEEe
Confidence            888765555444332221           11  1111 112577887777554 5444 36776665

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.30  E-value=0.0015  Score=54.90  Aligned_cols=203  Identities=13%  Similarity=0.110  Sum_probs=118.4

Q ss_pred             EEEEEeC-CCCEEEEEeCCC-cEEEEeCCCcceEEEeeCCCcCcE-EEEEEccCCCCCEEEEE-----eCCCeEEEEeCC
Q psy6984         110 LSVAFSV-DNRQIVSSSRDK-TIKLWNTLAHCKFTIVEDGHSDWV-SCVRFSPNHQNPIIVSA-----GWDRMVKVWNLT  181 (380)
Q Consensus       110 ~~~~~~~-~~~~~~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~-----~~d~~v~iwd~~  181 (380)
                      ..++.+| ....++.+-+-| ...+||..++.....+........ -.-+|+++++  +|++.     ...|.|-+||..
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEEECc
Confidence            4567777 444555565555 456788776655544332211111 2368888876  46554     335789999998


Q ss_pred             -CceeeEeeeCCccceEEEEEcCCCCEEEEEc------------------CCCcEEEEECCCCcEEEEEE-----ecCce
Q psy6984         182 -NCKLKINHSGHTGYLNTVTVSPDGSLCASGG------------------KDMNAMLWDLNDGKHLHTLV-----HNDII  237 (380)
Q Consensus       182 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~-----~~~~i  237 (380)
                       ..+.+-++..|.-....+.+.|||+.|+.+.                  .+-.+.+.|..+|+.+.+..     +...+
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             5566667777766677889999998777653                  12345556778888776643     45568


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee-------eccccceeEEEEeecCCEEE-EeeCCCcEEEE
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF-------FSLFRDVLSVAFSVDNRQIV-SSSRDKTIKLW  309 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~iw  309 (380)
                      +-+++.+++......- .........-.+.-...+.....+       .....-+-++++++++.+++ |+-..+.+.+|
T Consensus       166 RHLa~~~~G~V~~a~Q-~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQ-YQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eeEEecCCCcEEEEEe-cCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            8888888764322110 000001111122222222211111       11223477999999998775 55568899999


Q ss_pred             ecccce
Q psy6984         310 NTLAHC  315 (380)
Q Consensus       310 ~~~~~~  315 (380)
                      |..++.
T Consensus       245 d~~tg~  250 (305)
T PF07433_consen  245 DAATGR  250 (305)
T ss_pred             ECCCCC
Confidence            765443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.28  E-value=0.0018  Score=58.42  Aligned_cols=259  Identities=10%  Similarity=0.034  Sum_probs=136.3

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceE-EEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS-DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      +.++.++.+|.+..+|....+.......   .+   .+. ...+  .+..++.+..++.|..+|.++|+.+..+......
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKV---AG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccC---CC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence            4666777889999998765544332211   11   111 1111  2456777888999999999999988776532111


Q ss_pred             eEE-EEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC------cEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         109 VLS-VAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD------WVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       109 v~~-~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                      ... ..-+|  .+..++.++.++.+...|..++............      ....+...|--....++.++.++.+..+|
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence            100 00011  1335666777888887776654433221110000      00001111110122466677889999999


Q ss_pred             CCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe-cCc-eEEEEeecCcccceeeeeeee
Q psy6984         180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH-NDI-ITALCFSPNRSFQKIKLDISR  257 (380)
Q Consensus       180 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~-i~~~~~~~~~~~~~~~~~~~~  257 (380)
                      ..+++.......  .....+.  ..+..+..++.++.+..+|..+++.+..... ... ..+.... ++       .+..
T Consensus       273 ~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g-------~l~v  340 (394)
T PRK11138        273 LRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG-------YLVV  340 (394)
T ss_pred             CCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC-------EEEE
Confidence            998876544321  1111122  2456777788899999999999987654321 111 1111111 11       1111


Q ss_pred             eccccceEEEEcCCceeeeeeeccccceeE-EEEeecCCEEEEeeCCCcEEEEe
Q psy6984         258 TLQKSNLILYPINHGKMETPFFSLFRDVLS-VAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      ...++.++..+..+++......-....+.+ ..+  .+..|+.++.||.|+.++
T Consensus       341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        341 GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            223456667777777654433211122221 111  345677788999888764

>KOG3617|consensus

Probab=98.26  E-value=2.6e-05  Score=72.31  Aligned_cols=109  Identities=10%  Similarity=0.108  Sum_probs=78.8

Q ss_pred             EEEEEeCCCCEEEEEe----CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee
Q psy6984         110 LSVAFSVDNRQIVSSS----RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL  185 (380)
Q Consensus       110 ~~~~~~~~~~~~~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  185 (380)
                      +-.+|+|...+++.++    +.|.|.||-- ++......  ...-.+.+++|+|.  ..+|+.|=.-|.+.+|...+.+.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~V--t~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDV--TYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccc--ccceehhhhccChH--HHHHhhccccceeEEEecCCcee
Confidence            3457888888887766    5678888842 22211111  11112557899985  33566666668899999887666


Q ss_pred             eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      -.....|..+|..+.|||+|..++++..=|.+.+|.+.
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            55566799999999999999999999999999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.0018  Score=58.50  Aligned_cols=224  Identities=16%  Similarity=0.200  Sum_probs=107.1

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      +.+.........+.++|+|+.++.++ ||.-.||.....+...     .+.-....|.+.+ .+|+-...+.|.++.-.+
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence            33444445578899999999988855 6778888743322222     2345567888844 567766688899974322


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNA  217 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  217 (380)
                      ......+....  .+..+-  + +  .+|+..+ ++.|.+||+.+.+.+.....  ..|..+.|+++|++++..+.+ .+
T Consensus        99 ~~~~k~i~~~~--~~~~If--~-G--~LL~~~~-~~~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i  167 (443)
T PF04053_consen   99 NEVVKSIKLPF--SVEKIF--G-G--NLLGVKS-SDFICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SI  167 (443)
T ss_dssp             E-TT-----SS---EEEEE----S--SSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SE
T ss_pred             cccceEEcCCc--ccceEE--c-C--cEEEEEC-CCCEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC-eE
Confidence            21100111111  122232  2 2  2444444 45899999999887766653  247899999999999998866 67


Q ss_pred             EEEECCCC-----------cEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccce
Q psy6984         218 MLWDLNDG-----------KHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDV  285 (380)
Q Consensus       218 ~i~d~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  285 (380)
                      .+.+....           .....+. ....|.+.+|..+. +  + .   .  . .+..-| +..|.. ..+.....++
T Consensus       168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~-f--i-Y---t--T-~~~lkY-l~~Ge~-~~i~~ld~~~  235 (443)
T PF04053_consen  168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC-F--I-Y---T--T-SNHLKY-LVNGET-GIIAHLDKPL  235 (443)
T ss_dssp             EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE-E--E-E---E----TTEEEE-EETTEE-EEEEE-SS--
T ss_pred             EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCE-E--E-E---E--c-CCeEEE-EEcCCc-ceEEEcCCce
Confidence            77765433           0122222 25667777776541 1  0 0   0  0 111112 111111 1111223345


Q ss_pred             eEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         286 LSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       286 ~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      +=+.+.|..+.+.....|+.|..+.+
T Consensus       236 yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  236 YLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             EEEEEEccCCEEEEEECCCCEEEEEE
Confidence            55666666667777777777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1832|consensus

Probab=98.17  E-value=9.7e-07  Score=81.78  Aligned_cols=200  Identities=18%  Similarity=0.256  Sum_probs=133.4

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC--
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK--   86 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--   86 (380)
                      ..+++.|+..-++++|+.. .+.|+.|+-.|.|+++++....     ......+|...|+-+.-+.||..+++.+.-.  
T Consensus      1094 w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~-----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGS-----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred             chhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCcc-----ccccccccccccccccccCCcceeeeeccccCc
Confidence            3467889999999999987 6899999999999999987643     2345679999999999999998877665433  


Q ss_pred             cEEEEECCC-CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC---CCcCcEEEEEEccCCC
Q psy6984          87 TLRLWDLAA-GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED---GHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        87 ~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~  162 (380)
                      -..+|++.. +.....+    ..-.++.|+...+.-+.|.......+||+.+.........   +.+..-+++.|+|+..
T Consensus      1168 lsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             hHHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence            356898854 3333333    2345788887655556666666788999876544322111   1122236788998754


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                        +++   +||  .+||.+..+.+..+...+..+. -.|+|.|.-++.-+.     |||+++.+.++.+
T Consensus      1244 --LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1244 --LIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred             --eEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence              332   244  4799987654433222121111 248999988876654     8999887766544

>KOG1275|consensus

Probab=98.13  E-value=9.2e-05  Score=69.36  Aligned_cols=183  Identities=11%  Similarity=0.145  Sum_probs=110.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccce
Q psy6984         117 DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL  196 (380)
Q Consensus       117 ~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i  196 (380)
                      ++..++-|+--..+..+|+.+.+......-+ ...+.-++.+    +.++.+|...|+|.+-|.++.+.+..+..|.+.|
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS-ASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeecc-CCceEEEEec----CcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence            3456667776667777887765543333222 2224444442    3478899999999999999999999999999988


Q ss_pred             EEEEEcCCCCEEEEEcC---------CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         197 NTVTVSPDGSLCASGGK---------DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       197 ~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      ..+  +-.|+.|+++|.         |..|++||++.-+.+.-+.......-+.|.|.-.-     ........+.....
T Consensus       221 SDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t-----~~~V~S~sGq~q~v  293 (1118)
T KOG1275|consen  221 SDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTT-----RLAVTSQSGQFQFV  293 (1118)
T ss_pred             eee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccc-----eEEEEecccceeec
Confidence            654  557889998875         45668899887654433322222222223332110     01111122222222


Q ss_pred             E---cCCceeeeeee-ccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         268 P---INHGKMETPFF-SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       268 ~---~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      +   +.......... .....+..+++|+++..|+.|..+|.|.+|.-
T Consensus       294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            2   11110001111 11233788999999999999999999999963

>KOG1920|consensus

Probab=98.11  E-value=0.0041  Score=60.66  Aligned_cols=199  Identities=11%  Similarity=0.113  Sum_probs=124.1

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC---
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL---   93 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~---   93 (380)
                      +.|.++.+... ++.+..+..+|.|.+-|.....      .....--.++|.+.+|+||.+.++.....+++.+-+-   
T Consensus        69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   69 DEIVSVQFLAD-TNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             cceEEEEEecc-cceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence            47888888876 5667777778888887654321      1223334567999999999999998888888776442   


Q ss_pred             -CCCcee-------------------eeecccC---------------------CCeEEEEEeCCCCEEEEEe----CC-
Q psy6984          94 -AAGKTT-------------------RRFEDHT---------------------KDVLSVAFSVDNRQIVSSS----RD-  127 (380)
Q Consensus        94 -~~~~~~-------------------~~~~~h~---------------------~~v~~~~~~~~~~~~~s~~----~d-  127 (380)
                       -..+.+                   ..+.+..                     ..=+.+.|--||+++|+..    .+ 
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT  221 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence             111111                   0111100                     0113488999999998732    33 


Q ss_pred             CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE---EeCCCeEEEEeCCC---ceeeEeeeCCccceEEEEE
Q psy6984         128 KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS---AGWDRMVKVWNLTN---CKLKINHSGHTGYLNTVTV  201 (380)
Q Consensus       128 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s---~~~d~~v~iwd~~~---~~~~~~~~~~~~~i~~~~~  201 (380)
                      +.+++||...  .+.........--.+++|-|.+.  .+++   -.+|+.|.+|.-+.   ++.....+.....+..++|
T Consensus       222 RkirV~drEg--~Lns~se~~~~l~~~LsWkPsgs--~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W  297 (1265)
T KOG1920|consen  222 RKIRVYDREG--ALNSTSEPVEGLQHSLSWKPSGS--LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW  297 (1265)
T ss_pred             eeEEEecccc--hhhcccCcccccccceeecCCCC--eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence            8999999652  11111112222235788888543  4554   24466788887543   2333334444455899999


Q ss_pred             cCCCCEEEE---EcCCCcEEEEECCCCc
Q psy6984         202 SPDGSLCAS---GGKDMNAMLWDLNDGK  226 (380)
Q Consensus       202 ~~~~~~l~~---~~~d~~i~i~d~~~~~  226 (380)
                      +.++..|+.   ......|++|-+.+..
T Consensus       298 ns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  298 NSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             cCCCCceeeeecccccceEEEEEecCeE
Confidence            999999887   5555569999776654

>KOG2114|consensus

Probab=98.10  E-value=0.00057  Score=63.89  Aligned_cols=184  Identities=16%  Similarity=0.230  Sum_probs=115.5

Q ss_pred             eEEeEEecCcccc-eEEEEeCCCCCCeEEEeeCCC-----eEEEeecCCCCCCccccc----ccccC-----CCcceEEE
Q psy6984           6 LQLRGTLNGHNGW-VTQIATNPKFPDTILSCSRDN-----TLIIWKLTRDDTNYGVPQ----KRLKG-----HSHFISDI   70 (380)
Q Consensus         6 ~~~~~~~~~h~~~-v~~i~~~~~~~~~l~t~~~dg-----~v~vw~~~~~~~~~~~~~----~~~~~-----h~~~v~~~   70 (380)
                      .++.+.+..|... |+.+ +..+..++|++-+.|+     .+++|++++.+.+.. |+    .+...     ...++.++
T Consensus        54 ~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l  131 (933)
T KOG2114|consen   54 FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS-PQCLYEHRIFTIKNPTNPSPASSL  131 (933)
T ss_pred             ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC-cceeeeeeeeccCCCCCCCcceEE
Confidence            3455667777766 4444 4434346888877665     489999986543321 11    12222     34457889


Q ss_pred             EEccCCCEEEEEeCCCcEEEEECC--CCceee-ee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC
Q psy6984          71 VLSSDGNYALSGSWDKTLRLWDLA--AGKTTR-RF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED  146 (380)
Q Consensus        71 ~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~-~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~  146 (380)
                      +++.+-+.+|.|-.+|.|..+.-+  ..+-.+ .+ ..-..+|+.+++..++..++-+..-..|++|.+...........
T Consensus       132 ~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld  211 (933)
T KOG2114|consen  132 AVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD  211 (933)
T ss_pred             EEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeec
Confidence            999999999999999999988532  111111 12 22356899999998888744344445689998765543333345


Q ss_pred             CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCcc
Q psy6984         147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTG  194 (380)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~  194 (380)
                      .|.-..+|..+++...  .++.++ ...+.+|+....+....+. +|..
T Consensus       212 ~~G~~lnCss~~~~t~--qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  212 NNGISLNCSSFSDGTY--QFICAG-SEFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             cCCccceeeecCCCCc--cEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence            6777788999887543  244333 4688999887655544444 4443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.01  E-value=0.00052  Score=65.48  Aligned_cols=131  Identities=18%  Similarity=0.238  Sum_probs=88.2

Q ss_pred             CcceeeEEeEEecCcccc-eEEEEeCCC----CCCeEEEeeCCCeEEEeecCCCCC-CcccccccccCCCcceEEEEEcc
Q psy6984           1 MSTETLQLRGTLNGHNGW-VTQIATNPK----FPDTILSCSRDNTLIIWKLTRDDT-NYGVPQKRLKGHSHFISDIVLSS   74 (380)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~-v~~i~~~~~----~~~~l~t~~~dg~v~vw~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~   74 (380)
                      |+.+..+++.+-.-|... |.++....+    .++.-+.|-.++.+..||.+.... ......+.+ ......+|++-+.
T Consensus       509 mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~  587 (794)
T PF08553_consen  509 MDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTE  587 (794)
T ss_pred             EecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecC
Confidence            677778888888877654 777765432    134556677788999999764321 000011122 2334567787777


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd  134 (380)
                      +| +||+|+.+|.|++||-...+..-.+.+-..+|+.|..+.||+++++.+.. .+.+.+
T Consensus       588 ~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~  645 (794)
T PF08553_consen  588 DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID  645 (794)
T ss_pred             Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence            66 79999999999999954433333455667899999999999998877654 455655

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.00  E-value=0.013  Score=54.30  Aligned_cols=198  Identities=12%  Similarity=0.111  Sum_probs=107.6

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccc-cCCCcce-E-EEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccC
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-KGHSHFI-S-DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT  106 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~-~~h~~~v-~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~  106 (380)
                      ..++.++.++.+.-.|....+.......... ......+ . .+.+. ++..++.++.++.|+-+|.++|+.+.++....
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            4677777789988888765443322211100 0000011 0 11111 23688888999999999999999887765432


Q ss_pred             CC-----eE-EEEEeCCCCEEEEEe---------CCCcEEEEeCCCcceEEEeeCCCcC-------------------cE
Q psy6984         107 KD-----VL-SVAFSVDNRQIVSSS---------RDKTIKLWNTLAHCKFTIVEDGHSD-------------------WV  152 (380)
Q Consensus       107 ~~-----v~-~~~~~~~~~~~~s~~---------~d~~v~iwd~~~~~~~~~~~~~~~~-------------------~v  152 (380)
                      ..     +. ...+.  +..++.++         .++.+..+|..++............                   .+
T Consensus       141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            21     11 11111  23444443         3567788887666554433221110                   00


Q ss_pred             E-EEEEccCCCCCEEEEEeCCC------------------eEEEEeCCCceeeEeeeC--Ccc----ceEEEEEc----C
Q psy6984         153 S-CVRFSPNHQNPIIVSAGWDR------------------MVKVWNLTNCKLKINHSG--HTG----YLNTVTVS----P  203 (380)
Q Consensus       153 ~-~~~~~~~~~~~~l~s~~~d~------------------~v~iwd~~~~~~~~~~~~--~~~----~i~~~~~~----~  203 (380)
                      . ...+.+.  ...++.++.++                  .|.-+|..+++....+..  |..    ......+.    -
T Consensus       219 w~~pa~d~~--~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         219 WASPTYDPK--TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             cCCeeEeCC--CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence            0 1222222  23455555444                  688889998887765432  110    00101111    1


Q ss_pred             CCC---EEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         204 DGS---LCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       204 ~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      +|.   .++.++.+|.+...|..+|+.+....
T Consensus       297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence            333   67888999999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>KOG1645|consensus

Probab=97.94  E-value=0.0013  Score=56.31  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeCCCcEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSWDKTLR   89 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~   89 (380)
                      -+.+|...|..++++|...-++..++-+.+|++.|+.....     ...+..| ..+++++|..| ..++..|..+|.|.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----eeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            56788889999999998544788899999999999875432     2234445 67899999865 46788999999999


Q ss_pred             EEECCCC
Q psy6984          90 LWDLAAG   96 (380)
Q Consensus        90 vwd~~~~   96 (380)
                      |||++..
T Consensus       262 vyD~R~~  268 (463)
T KOG1645|consen  262 VYDMRQP  268 (463)
T ss_pred             EEEccCC
Confidence            9999754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.86  E-value=0.024  Score=52.68  Aligned_cols=152  Identities=14%  Similarity=0.138  Sum_probs=92.4

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccCC------CeE--EEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCC
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK------DVL--SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG  147 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~  147 (380)
                      +..++.++.++.|.-.|..+++.+.++.....      .+.  .++. .++..++.++.++.|..+|..+++........
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45677888889999999999988776643322      111  1111 12267778888999999998776665443321


Q ss_pred             CcC-c---EE-EEEEccCCCCCEEEEEe---------CCCeEEEEeCCCceeeEeeeCCcc-------------------
Q psy6984         148 HSD-W---VS-CVRFSPNHQNPIIVSAG---------WDRMVKVWNLTNCKLKINHSGHTG-------------------  194 (380)
Q Consensus       148 ~~~-~---v~-~~~~~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~~-------------------  194 (380)
                      ... .   +. ...+..    ..++.++         .++.+..+|..+++..........                   
T Consensus       140 ~~~~~~~~i~ssP~v~~----~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         140 DQVPPGYTMTGAPTIVK----KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCcCcceEecCCCEEEC----CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            110 0   11 111211    2344443         367889999988877655432110                   


Q ss_pred             -ce-EEEEEcCCCCEEEEEcCCC------------------cEEEEECCCCcEEEEEE
Q psy6984         195 -YL-NTVTVSPDGSLCASGGKDM------------------NAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       195 -~i-~~~~~~~~~~~l~~~~~d~------------------~i~i~d~~~~~~~~~~~  232 (380)
                       .+ ...++++.+..++.++.++                  .+.-+|..+++......
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~  273 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ  273 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence             01 1245566667777777665                  79999999999887764

The alignment model contains an 8-bladed beta-propeller.

>KOG3621|consensus

Probab=97.86  E-value=0.0045  Score=56.94  Aligned_cols=105  Identities=10%  Similarity=0.121  Sum_probs=75.6

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee------e
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR------F  102 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------~  102 (380)
                      .++++-|+.-|.+.+++.....    +......+-...+..+.++++..++|.|+..|.|.++.++.+.....      -
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~----~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d  120 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGE----MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD  120 (726)
T ss_pred             CceEEEecccceEEEEecCchh----hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence            5789999999999999754321    11111222233455566888888999999999999998876433211      1


Q ss_pred             cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984         103 EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus       103 ~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..|...|++++|++++..+.+|..-|+|..-.+..
T Consensus       121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            24778899999999999999999999987765443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.84  E-value=0.019  Score=52.05  Aligned_cols=221  Identities=11%  Similarity=0.130  Sum_probs=105.5

Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE-eCCCc
Q psy6984         105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW-NLTNC  183 (380)
Q Consensus       105 h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw-d~~~~  183 (380)
                      ..-.+..+.++|+|+.++. +.||...++........ ...     .....+|.+.+   .+++-.....|+++ ++++ 
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-~~G-----~g~~~vw~~~n---~yAv~~~~~~I~I~kn~~~-   99 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-AFG-----SGLSFVWSSRN---RYAVLESSSTIKIYKNFKN-   99 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-EEE-----E-SEEEE-TSS---EEEEE-TTS-EEEEETTEE-
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-ccC-----ceeEEEEecCc---cEEEEECCCeEEEEEcCcc-
Confidence            3445788999999999888 56677777764332221 111     12346777632   46666668889996 3322 


Q ss_pred             eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccc
Q psy6984         184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN  263 (380)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (380)
                      +....+.. ...+..+-.   |.+|...+.+ .|.+||..+++.+..+.... +..+.|++++.+.++.       .+..
T Consensus       100 ~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~-------t~~~  166 (443)
T PF04053_consen  100 EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALV-------TKDS  166 (443)
T ss_dssp             -TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE--------S-S
T ss_pred             ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEE-------eCCe
Confidence            21111111 112333322   8887777665 89999999999988887554 8899999997765443       2344


Q ss_pred             eEEEEcCCc--------ee---eeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeC
Q psy6984         264 LILYPINHG--------KM---ETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELR  332 (380)
Q Consensus       264 ~~~~~~~~~--------~~---~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  332 (380)
                      +++...+..        ..   ..........|.+.+|..+  .|+-.... .++.+  ..+..-.         +..+.
T Consensus       167 i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~---------i~~ld  232 (443)
T PF04053_consen  167 IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGI---------IAHLD  232 (443)
T ss_dssp             EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEE---------EEE-S
T ss_pred             EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcce---------EEEcC
Confidence            555443322        00   1111122345677777644  44433333 55553  1111111         11111


Q ss_pred             cccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         333 PDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                                  .+..=+...|..+.|+...+|+.|..+.+..
T Consensus       233 ------------~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 ------------KPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ------------S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ------------CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                        1233455677777788788888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649|consensus

Probab=97.83  E-value=0.011  Score=47.89  Aligned_cols=111  Identities=12%  Similarity=0.082  Sum_probs=71.4

Q ss_pred             eCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy6984          24 TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE  103 (380)
Q Consensus        24 ~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  103 (380)
                      ..++...+++.||..+.+.--|....+.....    .-  ...+.+-+.- -|++++.|...|.+++.+.++|.....+.
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~----il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~   90 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA----IL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV   90 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeeh----hh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee
Confidence            33444567888888887776665443221110    11  1123222222 37789999999999999999997766654


Q ss_pred             ccCCCeE-EEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE
Q psy6984         104 DHTKDVL-SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  142 (380)
Q Consensus       104 ~h~~~v~-~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~  142 (380)
                      .. +.|. .....+++..+..|+.|+....-|..+.....
T Consensus        91 ~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   91 IL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             eh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence            32 2222 23357889999999999999998877655443

>KOG1008|consensus

Probab=97.81  E-value=8.5e-06  Score=73.11  Aligned_cols=200  Identities=14%  Similarity=0.208  Sum_probs=123.8

Q ss_pred             cceEEEEeCCCCC-CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEe----CCCcEEE
Q psy6984          17 GWVTQIATNPKFP-DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGS----WDKTLRL   90 (380)
Q Consensus        17 ~~v~~i~~~~~~~-~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~----~d~~i~v   90 (380)
                      ..+.|+++.-.+. -+++.|..+|.|.+-.+...-   ....+...+|....++++|++ |.+.||.|-    .|..+.|
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h---dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH---DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcc---cccceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            4566777655433 468889999999988765321   112234567888899999987 667788774    3578999


Q ss_pred             EECCCC--ceee--eecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          91 WDLAAG--KTTR--RFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        91 wd~~~~--~~~~--~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      ||+.++  .+..  .+.. ......+++|..+.+.+++|...+.++++|++..+....  .-.+..+..+.+.|-.. .+
T Consensus       134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~-nY  210 (783)
T KOG1008|consen  134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSP-NY  210 (783)
T ss_pred             eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh--hhhhhhcccceecCCCC-Cc
Confidence            999775  2211  1222 223345778888888999999999999999764332111  11222345566666222 24


Q ss_pred             EEEEeCCCeEEEEe-CCCceeeEeee-----CCccceEEEEEcCCCC-EEEEE-cCCCcEEEEECC
Q psy6984         166 IVSAGWDRMVKVWN-LTNCKLKINHS-----GHTGYLNTVTVSPDGS-LCASG-GKDMNAMLWDLN  223 (380)
Q Consensus       166 l~s~~~d~~v~iwd-~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~l~~~-~~d~~i~i~d~~  223 (380)
                      +++ ..|+.|.+|| .++.+-.....     .....+..+++.|-.. .+++. -..+.|+++|+.
T Consensus       211 ~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  211 FCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             eec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            544 4499999999 43322111111     1123588899998433 34444 455889999874

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=9.2e-05  Score=41.12  Aligned_cols=38  Identities=39%  Similarity=0.630  Sum_probs=33.6

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEee
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK   45 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~   45 (380)
                      +....+.+|...|+++.+++. ...+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence            466778899999999999987 47999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.027  Score=50.45  Aligned_cols=203  Identities=16%  Similarity=0.165  Sum_probs=129.7

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC---CCcEEEEECCCCc
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW---DKTLRLWDLAAGK   97 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~   97 (380)
                      .++.++...+.+++...++.|.+-|..........    ..+.  ....++++++++.+..+..   ++.+.+.|..+++
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~----~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI----PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe----eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            45566654445666666688888885433221111    1222  4567999999988877766   6889999998888


Q ss_pred             eeeeecccCCCeEEEEEeCCCCEEEEE-eCCCcEEEEeCCCcceEE-Ee--eCCCcCcEEEEEEccCCCCCEEEEEeC--
Q psy6984          98 TTRRFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFT-IV--EDGHSDWVSCVRFSPNHQNPIIVSAGW--  171 (380)
Q Consensus        98 ~~~~~~~h~~~v~~~~~~~~~~~~~s~-~~d~~v~iwd~~~~~~~~-~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~--  171 (380)
                      .......-..+ ..++++|+|..+... ..++.+.+.|........ ..  ...-...-..+.+.|++.. +.++...  
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~-~yV~~~~~~  229 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNR-VYVANDGSG  229 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCE-EEEEeccCC
Confidence            88774433233 889999999966655 478899999854433221 00  0111122346788888764 3333332  


Q ss_pred             CCeEEEEeCCCceeeEe-ee-CCccceEEEEEcCCCCEEEEE-cCCCcEEEEECCCCcEEEEEE
Q psy6984         172 DRMVKVWNLTNCKLKIN-HS-GHTGYLNTVTVSPDGSLCASG-GKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      ++.+...|..+...... .. +.. ....+.++|+|+.+.+. +..+.+.+.|..+........
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            36888889887665443 11 112 45668899999988777 445899999988877666543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.76  E-value=0.0011  Score=63.24  Aligned_cols=144  Identities=18%  Similarity=0.180  Sum_probs=99.6

Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCceeeeecccCCC-eEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCcc-eEEE---
Q psy6984          75 DGNYALSG-SWDKTLRLWDLAAGKTTRRFEDHTKD-VLSVAFSV-----DNRQIVSSSRDKTIKLWNTLAHC-KFTI---  143 (380)
Q Consensus        75 ~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~~~s~~~d~~v~iwd~~~~~-~~~~---  143 (380)
                      +.++|+.- .....|+-.|+..|+.+..+..|... |..++-..     +....+.|-.++.+..||.+-.. +...   
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            34444443 34578999999999999999887644 55544221     23456788888999999976532 2211   


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      ..-.....+.|++...+|   .++.|+.+|.||+||--..+....+++-..+|..+.++.||+++++.+.. .|.+++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             cccccCCCceEEEecCCc---eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            011233457788776544   79999999999999954444445566667899999999999998877665 5667664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.75  E-value=0.0024  Score=57.45  Aligned_cols=176  Identities=19%  Similarity=0.216  Sum_probs=98.0

Q ss_pred             ceEEEEEccCCCEEEEEe---CC-CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEE--eCCCc
Q psy6984          66 FISDIVLSSDGNYALSGS---WD-KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLW--NTLAH  138 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~---~d-~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iw--d~~~~  138 (380)
                      .+..-.|+|++..++-..   .. ..+.++++.+++....+. ..+.-..-+|+|||+.++ +..+|+...||  |+...
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~  272 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK  272 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence            355667888887665432   22 469999999887666543 223334568999999876 56677766666  54444


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe--EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC-C
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM--VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD-M  215 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~  215 (380)
                      .... +.... ..-..-.|+|+++. ++++.+..|.  |.+.++....... .......-..-.++|||++++..+.. |
T Consensus       273 ~~~~-Lt~~~-gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         273 NLPR-LTNGF-GINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             ccee-cccCC-ccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEEeccCC
Confidence            3222 22211 11225678898876 4444554554  5555655544322 22122222256789999998877643 4


Q ss_pred             c--EEEEECCCCcEEEEEEecCceEEEEeecCc
Q psy6984         216 N--AMLWDLNDGKHLHTLVHNDIITALCFSPNR  246 (380)
Q Consensus       216 ~--i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~  246 (380)
                      .  |.+.|+.++..+..+........-.|.+++
T Consensus       349 ~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng  381 (425)
T COG0823         349 QWDIDKNDLASGGKIRILTSTYLNESPSWAPNG  381 (425)
T ss_pred             ceeeEEeccCCCCcEEEccccccCCCCCcCCCC
Confidence            4  666666665543333333223333344443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.74  E-value=0.0061  Score=56.41  Aligned_cols=148  Identities=11%  Similarity=0.044  Sum_probs=90.6

Q ss_pred             EccCCCEEEEEe-CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe-------------------------
Q psy6984          72 LSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-------------------------  125 (380)
Q Consensus        72 ~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-------------------------  125 (380)
                      ++|||+.+...+ ..+.+.+.|..+.+....+.- .+....++++|+|.++++.+                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            455676554332 235667777776555554432 12334567777777776664                         


Q ss_pred             ---------------CCCcEEEEeCCC-----cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee
Q psy6984         126 ---------------RDKTIKLWNTLA-----HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL  185 (380)
Q Consensus       126 ---------------~d~~v~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  185 (380)
                                     .++.|.+.|..+     ......+.-+  ...+.+.++|+++. +++++..+.+|.+.|+.+.+.
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGky-lyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKY-FIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCE-EEEeCCCCCcEEEEEChhhhh
Confidence                           123455666544     1122222222  23567899998764 566778899999999987442


Q ss_pred             ------------eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         186 ------------KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       186 ------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                                  .....- .......+|+++|+.+.+--.|..|..||+..
T Consensus       356 ~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                        111111 12344578899999888889999999999876

>KOG4640|consensus

Probab=97.63  E-value=0.0004  Score=62.70  Aligned_cols=92  Identities=13%  Similarity=0.057  Sum_probs=73.7

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeE-EEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL-SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      .+.-+.|+|.-.++|.+..+|.|.++-++ -+.+..+..+..+++ +++|.|||+.+|.|-.||+|++-|..++..+...
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46778999999999999999999999887 566777776777777 9999999999999999999999998776655442


Q ss_pred             eCCCcCcEEEEEEc
Q psy6984         145 EDGHSDWVSCVRFS  158 (380)
Q Consensus       145 ~~~~~~~v~~~~~~  158 (380)
                      .......|.++-|.
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            22334455665554

>smart00320 WD40 WD40 repeats

Probab=97.62  E-value=0.00022  Score=39.48  Aligned_cols=38  Identities=45%  Similarity=0.671  Sum_probs=33.1

Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd  134 (380)
                      +....+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556677888999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.58  E-value=0.032  Score=46.24  Aligned_cols=203  Identities=13%  Similarity=0.174  Sum_probs=108.5

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ...+.|-...+..|.++|+...+++.....+.|.-.++.. +..   ....+.+. .....+++..++.++++--.++.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~vl---r~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L   88 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KVL---RRIPLDGF-GDYEGITYLGNGRYVLSEERDQRL   88 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE---EEEE-SS--SSEEEEEE-STTEEEEEETTTTEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CEE---EEEeCCCC-CCceeEEEECCCEEEEEEcCCCcE
Confidence            4567787788999999998555566666677766555432 111   11223442 346788988888777766668999


Q ss_pred             EEEECCCCc------eeeeec-----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---cceEEEee-------CC
Q psy6984          89 RLWDLAAGK------TTRRFE-----DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA---HCKFTIVE-------DG  147 (380)
Q Consensus        89 ~vwd~~~~~------~~~~~~-----~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~---~~~~~~~~-------~~  147 (380)
                      .++++....      ....+.     .+...+-.++|+|.+..++.+-...-..+|....   ........       ..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            999884321      111121     2445688999999988888887776777776533   11111110       11


Q ss_pred             CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--C-------CccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984         148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--G-------HTGYLNTVTVSPDGSLCASGGKDMNAM  218 (380)
Q Consensus       148 ~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~  218 (380)
                      ....+..+.++|...+ +++-......|..+|.. ++....+.  .       .......++|+++|++.+++- -+..+
T Consensus       169 ~~~d~S~l~~~p~t~~-lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy  245 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGH-LLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFY  245 (248)
T ss_dssp             -SS---EEEEETTTTE-EEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEE
T ss_pred             eeccccceEEcCCCCe-EEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEE
Confidence            2334778999987543 55556667888888844 34332221  1       113578899999998776663 33444


Q ss_pred             E
Q psy6984         219 L  219 (380)
Q Consensus       219 i  219 (380)
                      +
T Consensus       246 ~  246 (248)
T PF06977_consen  246 R  246 (248)
T ss_dssp             E
T ss_pred             E
Confidence            3

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.56  E-value=0.034  Score=46.08  Aligned_cols=185  Identities=15%  Similarity=0.212  Sum_probs=101.3

Q ss_pred             ccccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeeccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          58 KRLKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDH-TKDVLSVAFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      +.+.+-...++.+.|.|+.+ ++++....+.|.-++. +|+.++++.-. .+..-.|++..++.++++.-+++.+.+++.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34556666799999999755 5666777888988886 47777776433 256778888888877777767888888876


Q ss_pred             CCcc------eEEEee----CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC----ceee-Eee------eCCcc
Q psy6984         136 LAHC------KFTIVE----DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN----CKLK-INH------SGHTG  194 (380)
Q Consensus       136 ~~~~------~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~----~~~~-~~~------~~~~~  194 (380)
                      ....      ......    ..+...+..++|.|..+.  |+.+-.....+++.++.    .... ...      .....
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            2211      111111    123345889999997543  43444445555665543    1111 111      11234


Q ss_pred             ceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEecC----------ceEEEEeecCc
Q psy6984         195 YLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVHND----------IITALCFSPNR  246 (380)
Q Consensus       195 ~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~i~~~~~~~~~  246 (380)
                      .+.++.++|. +.+++....+..|..+| ..|+.+..+....          +...++|.+++
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            5788999995 55677788888999999 6777766654322          35566666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1008|consensus

Probab=97.54  E-value=4.5e-05  Score=68.65  Aligned_cols=164  Identities=17%  Similarity=0.273  Sum_probs=106.2

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEee----CCCeEEEeecCCCCCCcccccc--ccc-CCCcceEEEEEccCCCEEEEEeC
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCS----RDNTLIIWKLTRDDTNYGVPQK--RLK-GHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~----~dg~v~vw~~~~~~~~~~~~~~--~~~-~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      .++|....++++|++-..+.||+|=    .|-.+.+||+...-.   .|..  .+. +-......++|-.+.+.+.+|..
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt---vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~  174 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT---VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT  174 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccC---CCccccccccccccCccccccccCcchhhcccc
Confidence            3567778899999987556777663    467899999875321   1211  122 23445668888888899999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCC-Ccce-EEE-ee--CCCcCcEEEEEEc
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTL-AHCK-FTI-VE--DGHSDWVSCVRFS  158 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~-~~~~-~~~-~~--~~~~~~v~~~~~~  158 (380)
                      ...++++|++-.... .....+..+..+..+| .+.++++-. |+.+-+||.. .-.. +.. ..  ......+..++|+
T Consensus       175 sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             cchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence            999999998632111 1122344567778888 677777666 8999999942 2111 111 11  1112247789999


Q ss_pred             cCCCCCEEEEEeCC-CeEEEEeCC
Q psy6984         159 PNHQNPIIVSAGWD-RMVKVWNLT  181 (380)
Q Consensus       159 ~~~~~~~l~s~~~d-~~v~iwd~~  181 (380)
                      |..+ ..+++...| ++|+++|+.
T Consensus       253 Ptrt-glla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  253 PTRT-GLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCCc-chhhhhccCcceEEEeccc
Confidence            9864 466666554 789999985

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.51  E-value=0.061  Score=47.71  Aligned_cols=271  Identities=19%  Similarity=0.242  Sum_probs=130.1

Q ss_pred             ccCCCEEEEE---------eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          73 SSDGNYALSG---------SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        73 ~~~~~~l~s~---------~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      |||+++++..         +..+.+.|||+.+++....... ...+....|+|+|+.++-... +.|.+++........+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEe
Confidence            5677776652         2246789999998765554333 567888999999999887754 5688887655544333


Q ss_pred             eeCCCc----------------CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCcc---ceEEEEEcCC
Q psy6984         144 VEDGHS----------------DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTG---YLNTVTVSPD  204 (380)
Q Consensus       144 ~~~~~~----------------~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~i~~~~~~~~  204 (380)
                      ...+..                +.-..+.|+|+++. +++.--.+..|+.+.+..      ......   .+..+.+..-
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~-la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~  151 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY-LAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKA  151 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE-EEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BT
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCE-EEEEEECCcCCceEEeec------cCCccccCCcccccccCCC
Confidence            333311                11234778888764 333333444554443311      001111   2233332211


Q ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEE------EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee
Q psy6984         205 GSLCASGGKDMNAMLWDLNDGKHLHTL------VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF  278 (380)
Q Consensus       205 ~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (380)
                      |.--    ..-.+.++|+.+++....-      .....+..+.|.+++.. .......+......+.+++...+......
T Consensus       152 G~~n----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~-l~~~~~nR~q~~~~l~~~d~~tg~~~~~~  226 (353)
T PF00930_consen  152 GDPN----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR-LWVQWLNRDQNRLDLVLCDASTGETRVVL  226 (353)
T ss_dssp             TS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE-EEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred             CCcC----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE-EEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence            1111    1124566788777643211      12445788899888761 12222233333444555666544332222


Q ss_pred             eccc----cceeEEEEe-ecCCE-EEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceE-EEE
Q psy6984         279 FSLF----RDVLSVAFS-VDNRQ-IVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCL-SLA  351 (380)
Q Consensus       279 ~~~~----~~v~~~~~s-~~~~~-l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  351 (380)
                      ....    ..-....|. +++.. |.....||.-+++-+         +..+.... .+.         ...-.|. -+.
T Consensus       227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~---------~~~~~~~~-~lT---------~G~~~V~~i~~  287 (353)
T PF00930_consen  227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY---------DLDGGKPR-QLT---------SGDWEVTSILG  287 (353)
T ss_dssp             EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE---------ETTSSEEE-ESS----------SSS-EEEEEE
T ss_pred             EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE---------ccccccee-ccc---------cCceeecccce
Confidence            1111    112244554 55544 444446776555532         33332211 111         1112232 366


Q ss_pred             EecCCCEEE-EEeeC--CeEEEEEeeee
Q psy6984         352 WSTDGQTLF-AGYSD--NTIRVWQVSVT  376 (380)
Q Consensus       352 ~s~dg~~l~-~g~~d--g~v~iw~~~~~  376 (380)
                      |+++++.|+ +|..+  +.-.+|.+...
T Consensus       288 ~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  288 WDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             EECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             EcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            888877765 55542  35677776544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.49  E-value=0.069  Score=47.78  Aligned_cols=202  Identities=12%  Similarity=0.119  Sum_probs=106.3

Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-------------------------e-----------------EEEee
Q psy6984         108 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-------------------------K-----------------FTIVE  145 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~-------------------------~-----------------~~~~~  145 (380)
                      .|+.+.|+++...|+.|...|.|.+|......                         .                 ...+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            57888999998899999999988888521100                         0                 00111


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--C------CccceEEEEEc-----CCC---CEEE
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--G------HTGYLNTVTVS-----PDG---SLCA  209 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~------~~~~i~~~~~~-----~~~---~~l~  209 (380)
                      +.....|.+++.+.-   .+++.|..+|.+.+.|++....+....  .      ....++++.|.     .|+   ..++
T Consensus        83 ~~~~g~vtal~~S~i---GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI---GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE-BT---SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecCCC---cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            233567888888643   488899999999999999877655421  1      23457777775     233   4788


Q ss_pred             EEcCCCcEEEEECC--CCcE--E---EEE-EecCceEEEE-eecCcccceee--------------eeeeeeccccceEE
Q psy6984         210 SGGKDMNAMLWDLN--DGKH--L---HTL-VHNDIITALC-FSPNRSFQKIK--------------LDISRTLQKSNLIL  266 (380)
Q Consensus       210 ~~~~d~~i~i~d~~--~~~~--~---~~~-~~~~~i~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~  266 (380)
                      +|...|.+.+|.+.  .+..  +   ... .+.+++..+. ++.+....+..              ...........+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            99999999999764  1111  1   111 2344444444 32221100000              00112233455666


Q ss_pred             EEcCCceeeeeeeccccceeEEEE-----eecCCEEEEeeCCCcEEEEecc
Q psy6984         267 YPINHGKMETPFFSLFRDVLSVAF-----SVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                      +...+.+.....+........+.+     ...+..|++-..+|.|+++.+-
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP  290 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP  290 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence            666655544433322122223444     2356678888899999999753

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.48  E-value=0.069  Score=47.76  Aligned_cols=213  Identities=13%  Similarity=0.157  Sum_probs=115.5

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc----------c----------------------------ccccc
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY----------G----------------------------VPQKR   59 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~----------~----------------------------~~~~~   59 (380)
                      .|+.+++.+. .--|+.+...|.|.+|+....+..-          .                            .|...
T Consensus         3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5888999887 4568888889999999875321110          0                            00011


Q ss_pred             ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee--cc------cCCCeEEEEEeC-----CC---CEEEE
Q psy6984          60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF--ED------HTKDVLSVAFSV-----DN---RQIVS  123 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~------h~~~v~~~~~~~-----~~---~~~~s  123 (380)
                      +....+.|++++.|. =.++|.|..+|.+.|.|++....+..-  ..      ....++++.|+.     |+   -.++.
T Consensus        82 ~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   82 LDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             E---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             eeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            233467788999874 459999999999999999776554431  11      234578888862     33   36789


Q ss_pred             EeCCCcEEEEeCCC--cceEE--E--eeCCCcCcEEEEE-EccC------------------CCCCEEEEEeCCCeEEEE
Q psy6984         124 SSRDKTIKLWNTLA--HCKFT--I--VEDGHSDWVSCVR-FSPN------------------HQNPIIVSAGWDRMVKVW  178 (380)
Q Consensus       124 ~~~d~~v~iwd~~~--~~~~~--~--~~~~~~~~v~~~~-~~~~------------------~~~~~l~s~~~d~~v~iw  178 (380)
                      |...|.+.+|.+..  .....  .  ....+.+.+..+. ++.+                  -.-+-++....+..+|++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            99999999997542  11111  1  1112334444433 2111                  011123444457899999


Q ss_pred             eCCCceeeEeeeCCccceEEEEE-----cCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         179 NLTNCKLKINHSGHTGYLNTVTV-----SPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       179 d~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      ...+.+..............+.+     ...+..|++-..+|.++++.+..-+.+....
T Consensus       241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            98876654433322222233334     2356678888899999999998776665554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.47  E-value=0.069  Score=47.39  Aligned_cols=285  Identities=21%  Similarity=0.242  Sum_probs=134.3

Q ss_pred             CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-c------------
Q psy6984          38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-D------------  104 (380)
Q Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~------------  104 (380)
                      .+...++|+.....      ..+......+....|+|+|++++-.. ++.|++++..+++..+... +            
T Consensus        22 ~~~y~i~d~~~~~~------~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwv   94 (353)
T PF00930_consen   22 KGDYYIYDIETGEI------TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWV   94 (353)
T ss_dssp             EEEEEEEETTTTEE------EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HH
T ss_pred             ceeEEEEecCCCce------EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCcccee
Confidence            35677777764321      11111145678899999999988876 5799999987774443211 1            


Q ss_pred             ---c-CCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCCC--cCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984         105 ---H-TKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDGH--SDWVSCVRFSPNHQNPIIVSAGWDRMVKV  177 (380)
Q Consensus       105 ---h-~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~~~d~~v~i  177 (380)
                         . -+.-..+.||||+++||... .+..|+.+.+..      ....+  -..+..+.+-.-+...-      .-.+.+
T Consensus        95 yeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~G~~np------~v~l~v  162 (353)
T PF00930_consen   95 YEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKAGDPNP------RVSLFV  162 (353)
T ss_dssp             HHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BTTS---------EEEEEE
T ss_pred             ccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccCCCCCcCC------ceEEEE
Confidence               0 11234688999999998654 344444443210      00010  01244444422222110      124567


Q ss_pred             EeCCCceee-Eeee----CCccceEEEEEcCCCCEEEEE--cCC---CcEEEEECCCCcEEEEE--EecCce---EEEEe
Q psy6984         178 WNLTNCKLK-INHS----GHTGYLNTVTVSPDGSLCASG--GKD---MNAMLWDLNDGKHLHTL--VHNDII---TALCF  242 (380)
Q Consensus       178 wd~~~~~~~-~~~~----~~~~~i~~~~~~~~~~~l~~~--~~d---~~i~i~d~~~~~~~~~~--~~~~~i---~~~~~  242 (380)
                      +|+.+++.. ....    .....+..+.|.++++.|+..  ..+   ..+.+.|..++......  ..+..+   ....+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~  242 (353)
T PF00930_consen  163 VDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHF  242 (353)
T ss_dssp             EESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE
T ss_pred             EECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccc
Confidence            888776642 2222    234568889999999844332  222   34556677665432222  222221   13333


Q ss_pred             e-cCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccccee-EEEEeecCCEEE-EeeCC--CcEEEEecccceee
Q psy6984         243 S-PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL-SVAFSVDNRQIV-SSSRD--KTIKLWNTLAHCKF  317 (380)
Q Consensus       243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~-s~~~d--g~v~iw~~~~~~~~  317 (380)
                      . +++.....   .....+-..+++++...+... .+....-.|. -+.++++++.++ ++..+  +.-.+|.       
T Consensus       243 ~~~~~~~~l~---~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~-------  311 (353)
T PF00930_consen  243 LGPDGNEFLW---ISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR-------  311 (353)
T ss_dssp             -TTTSSEEEE---EEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE-------
T ss_pred             ccCCCCEEEE---EEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE-------
Confidence            2 32221111   111112334555565555432 3333344554 367788877654 44432  2334443       


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY  363 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~  363 (380)
                        ++.........+...     ..    ....+.|||+|++++-..
T Consensus       312 --v~~~~~~~~~~LT~~-----~~----~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  312 --VSLDSGGEPKCLTCE-----DG----DHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             --EETTETTEEEESSTT-----SS----TTEEEEE-TTSSEEEEEE
T ss_pred             --EEeCCCCCeEeccCC-----CC----CceEEEECCCCCEEEEEE
Confidence              233311122222211     11    115789999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.44  E-value=0.037  Score=48.37  Aligned_cols=136  Identities=13%  Similarity=0.205  Sum_probs=80.4

Q ss_pred             CeEEEeecCCC-CCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeeeecc-cCCCeEEEEEe
Q psy6984          39 NTLIIWKLTRD-DTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-TTRRFED-HTKDVLSVAFS  115 (380)
Q Consensus        39 g~v~vw~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~-h~~~v~~~~~~  115 (380)
                      |.+.++++... .....+....-....+.|++++.- ++ +|+.+. ++.|.+|++...+ ....... ..-.+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            88999998763 111122211122345678888755 34 444444 4789999998877 4433222 12245555544


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC--cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984         116 VDNRQIVSSSRDKTIKLWNTLA--HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       116 ~~~~~~~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                        +++++.|.....+.++....  ......-.+....++.++.+.++. . .++.+..+|.+.++...
T Consensus       139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~-~-~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE-D-TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS-S-EEEEEETTSEEEEEEE-
T ss_pred             --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC-c-EEEEEcCCCeEEEEEEC
Confidence              66999998888888774332  222222333445678888888665 3 78889999999998775

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.42  E-value=0.065  Score=45.99  Aligned_cols=277  Identities=18%  Similarity=0.174  Sum_probs=126.9

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEee----------CCCeEEEeecCCCCCCc--ccccc-cccCCCcceEEEE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCS----------RDNTLIIWKLTRDDTNY--GVPQK-RLKGHSHFISDIV   71 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~----------~dg~v~vw~~~~~~~~~--~~~~~-~~~~h~~~v~~~~   71 (380)
                      +.++.+.+..  +-.-.+..+|+ ++.+.+++          ..-.|.+||........  .+|.+ +... ........
T Consensus        26 ~~k~lGmi~~--g~~~~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~-~~~~~~~~  101 (342)
T PF06433_consen   26 SGKLLGMIDT--GFLGNVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV-VPYKNMFA  101 (342)
T ss_dssp             TTEEEEEEEE--ESSEEEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B-S--GGGEE
T ss_pred             CCcEEEEeec--ccCCceeECCC-CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee-cccccceE
Confidence            3344444442  22333556676 45666543          34478899976432221  12322 2221 12334567


Q ss_pred             EccCCCEEEEE--eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE----ee
Q psy6984          72 LSSDGNYALSG--SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI----VE  145 (380)
Q Consensus        72 ~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~----~~  145 (380)
                      ++.|+++++..  +--.+|.|-|+..++.+.++.. .+ +..+--++ .+.|.+-+.||.+.-..+....+...    ..
T Consensus       102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F  178 (342)
T PF06433_consen  102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF  178 (342)
T ss_dssp             E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred             EccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence            89999988775  4556899999999888877642 12 22222122 24688889999888776543222111    11


Q ss_pred             CCCcC-cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEc-CCCcEEEEE
Q psy6984         146 DGHSD-WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGG-KDMNAMLWD  221 (380)
Q Consensus       146 ~~~~~-~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d  221 (380)
                      ....+ .+..-++...+.  .++=-+.+|.|+--|+.........+  --...-..-.|-|.|-.+++.. ..+++++- 
T Consensus       179 ~~~~dp~f~~~~~~~~~~--~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL-  255 (342)
T PF06433_consen  179 DPDDDPLFEHPAYSRDGG--RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL-  255 (342)
T ss_dssp             STTTS-B-S--EEETTTT--EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE-
T ss_pred             CCCCcccccccceECCCC--eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE-
Confidence            11111 111222222111  23335667777777776544322110  0000000012334333322222 22232221 


Q ss_pred             CCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEe
Q psy6984         222 LNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSS  300 (380)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~  300 (380)
                                .|+.        ..+....         ....+++++..+++....+.- ..++.+++.+.+.+ +|++.
T Consensus       256 ----------Mh~g--------~~gsHKd---------pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  256 ----------MHQG--------GEGSHKD---------PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             ----------EEE----------TT-TTS----------EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEE
T ss_pred             ----------ecCC--------CCCCccC---------CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEE
Confidence                      1110        0000000         112355666666655443321 23466788888766 55444


Q ss_pred             e-CCCcEEEEecccceeeeE
Q psy6984         301 S-RDKTIKLWNTLAHCKFTI  319 (380)
Q Consensus       301 ~-~dg~v~iw~~~~~~~~~~  319 (380)
                      + .++.+.+||..+++.+..
T Consensus       308 ~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             ETTTTEEEEEETTT--EEEE
T ss_pred             cCCCCeEEEEeCcCCcEEee
Confidence            3 578999998877655443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2395|consensus

Probab=97.42  E-value=0.0037  Score=55.63  Aligned_cols=144  Identities=19%  Similarity=0.232  Sum_probs=100.2

Q ss_pred             cCCCEEE-EEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCC-------EEEEEeCCCcEEEEeCCCcce-EEEe
Q psy6984          74 SDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-------QIVSSSRDKTIKLWNTLAHCK-FTIV  144 (380)
Q Consensus        74 ~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~~~s~~~d~~v~iwd~~~~~~-~~~~  144 (380)
                      .+.++|+ ++.....++-.|+..|+.+.++..+.. |.-+.+.|+..       .-+.|-.|+.|.-||.+-... ....
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            4445444 455567788999999999999987766 66666777643       235677888999999764322 1122


Q ss_pred             eCCC----cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         145 EDGH----SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       145 ~~~~----~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                      .++|    .....|.+...+   .+++.|+.+|.||+||--.......+++-..+|..+..+.+|++++..+.. .+.+.
T Consensus       422 ~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi  497 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLI  497 (644)
T ss_pred             eeccccccccccceeeecCC---ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEE
Confidence            2233    234556655443   479999999999999975445555677778899999999999998766554 56666


Q ss_pred             EC
Q psy6984         221 DL  222 (380)
Q Consensus       221 d~  222 (380)
                      ++
T Consensus       498 ~t  499 (644)
T KOG2395|consen  498 DT  499 (644)
T ss_pred             EE
Confidence            54

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.41  E-value=0.047  Score=49.34  Aligned_cols=186  Identities=15%  Similarity=0.101  Sum_probs=96.3

Q ss_pred             ceEEEEeCCCCCCeEEE-eeCC--CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCC--cEEEE
Q psy6984          18 WVTQIATNPKFPDTILS-CSRD--NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDK--TLRLW   91 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t-~~~d--g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~--~i~vw   91 (380)
                      .+..=.|.|+...+... -...  ..+.++++.......   ...+.++   -....|+|||++|+-. ..||  .|+++
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~---i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV---ILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---eeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            34445566663332222 1122  247777766443211   1123333   2356799999887754 4555  56777


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCCEEEE-EeCCCcEEEE--eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKTIKLW--NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      |+.+++..+ +..-.+.-..-.|+|||+.++- .++.|.-+||  +.................  +..++|+++.. ++.
T Consensus       268 dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i-~~~  343 (425)
T COG0823         268 DLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKI-VFE  343 (425)
T ss_pred             cCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEE-EEE
Confidence            887766444 4332232335678999998875 4455655555  444443333332222222  67788887642 233


Q ss_pred             EeCCCe--EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         169 AGWDRM--VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       169 ~~~d~~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      ...+|.  |.+.|+.+......+ ........-.+.|+|+.+...+..
T Consensus       344 ~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         344 SSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             eccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence            333444  556666554421111 122233445677888876655443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.41  E-value=0.064  Score=45.70  Aligned_cols=150  Identities=18%  Similarity=0.201  Sum_probs=85.6

Q ss_pred             cCCCEEEEEeCCCcEEEEECCC-CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE---------
Q psy6984          74 SDGNYALSGSWDKTLRLWDLAA-GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI---------  143 (380)
Q Consensus        74 ~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~---------  143 (380)
                      ..++.|+.|..+| +++++... .+..+..  +...|..+...|+-+.++.-+ |+.+.++++..-.....         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            4578999998888 99999833 2333322  233499999988877766654 49999998642111110         


Q ss_pred             ----eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc-----eeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         144 ----VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC-----KLKINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       144 ----~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                          ........+...+..........+.....+.|.+|.....     +...++. -...+..+.|.  ++.++.|..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence                0011122233333111112223344455668888887653     2222222 23567888887  5566666654


Q ss_pred             CcEEEEECCCCcEEEEE
Q psy6984         215 MNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~  231 (380)
                       ...+.|+.++.....+
T Consensus       158 -~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  158 -GFYLIDLNTGSPSELL  173 (275)
T ss_pred             -ceEEEecCCCCceEEe
Confidence             4788898876654433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG3621|consensus

Probab=97.37  E-value=0.00097  Score=61.08  Aligned_cols=118  Identities=12%  Similarity=0.101  Sum_probs=87.5

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984          63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~  141 (380)
                      |...|.--+++..+++++.|+.-|.+++|+-..++....-. +-.+.+..+..+++..++|.|+..|.|.++.+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            33445666677889999999999999999987776554322 23344556677888889999999999999976442221


Q ss_pred             E-----EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC
Q psy6984         142 T-----IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       142 ~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~  182 (380)
                      .     .....|...|+|+.|++++.  .+++|...|.|.+-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence            1     12234677899999999875  589999999998877765

>KOG4640|consensus

Probab=97.36  E-value=0.0013  Score=59.54  Aligned_cols=91  Identities=18%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceE-EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984         151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLN-TVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      .+.-+.|+|.-  .+++.+..+|.|-+..+. ......++-|...+. +++|.|||+.+|.|-.||+|++.|+.++..+.
T Consensus        22 ~i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            35667888853  478888888988888777 444555555555566 99999999999999999999999999998887


Q ss_pred             E--EEecCceEEEEeec
Q psy6984         230 T--LVHNDIITALCFSP  244 (380)
Q Consensus       230 ~--~~~~~~i~~~~~~~  244 (380)
                      .  +.....+...-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            7  55677777777764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.30  E-value=0.017  Score=40.55  Aligned_cols=101  Identities=13%  Similarity=0.158  Sum_probs=62.8

Q ss_pred             eEEEEeC---CCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          19 VTQIATN---PKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        19 v~~i~~~---~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      |++|++.   .+..+.|+.||.|..||+|+-+.  ..     ..++ -.+.|..+.-... .+++-+..+|+|-+|+-. 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~-----~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~-   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IV-----AEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS-   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EE-----EEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc-
Confidence            4555543   33346799999999999997331  11     1112 2345777776655 679999999999999853 


Q ss_pred             CceeeeecccCCCeEEEEEeC-C--C-CEEEEEeCCCcEE
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSV-D--N-RQIVSSSRDKTIK  131 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~-~--~-~~~~s~~~d~~v~  131 (380)
                       +.+...+. +..++++.+.. +  | ..|++|-.+|.|-
T Consensus        72 -~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 -QRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -ceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence             22333332 23366666543 3  2 2588888888763

>KOG2444|consensus

Probab=97.25  E-value=0.0018  Score=51.26  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=70.6

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEE-EEccCCCEEEEEeCCCcEEEEECCCCceeeeecccC-
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI-VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT-  106 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-  106 (380)
                      ...++.|+.+|.|.+|+........    .....-...|.+. ....++.+..+++.||.|+.|+...++.+.....|. 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~----d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHS----DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHH----HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence            4578889999999999865322111    1112222233332 233466789999999999999999988888877787 


Q ss_pred             CCeEEEEEeCCCCEEEEE--eCCCcEEEEeCC
Q psy6984         107 KDVLSVAFSVDNRQIVSS--SRDKTIKLWNTL  136 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~--~~d~~v~iwd~~  136 (380)
                      .++..+..+..++.++.+  |.|..++.|++.
T Consensus       146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            556666666666667666  777777777753

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.17  E-value=0.026  Score=53.28  Aligned_cols=185  Identities=16%  Similarity=0.154  Sum_probs=94.9

Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEc------CCC--cEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG------KDM--NAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                      +|.+.-.+-..........+....+...+++|+|+.++...      .|.  .|.+++... .. ..+........-.|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWs  405 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWS  405 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceEC
Confidence            56655444322222222223334678889999999876654      243  555556422 22 333333347778899


Q ss_pred             cCcccceeeee------eeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984         244 PNRSFQKIKLD------ISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       244 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                      |++.......+      +........+++.++..+....   .....|..+.|||||..++... +|.|++=-+      
T Consensus       406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V------  475 (591)
T PRK13616        406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVV------  475 (591)
T ss_pred             CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEE------
Confidence            98654332211      0111123344445555443322   3345699999999999888765 466655321      


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                        .......  ..+....  .........+.++.|..++.++ ++..++...+|.+.+
T Consensus       476 --vr~~~G~--~~l~~~~--~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~v  526 (591)
T PRK13616        476 --EQTEDGQ--YALTNPR--EVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNL  526 (591)
T ss_pred             --EeCCCCc--eeecccE--EeecccCCccccceEecCCEEE-EEecCCCCceEEEec
Confidence              1111110  0110000  0001111223578899999965 555666677887764

>KOG4649|consensus

Probab=97.15  E-value=0.099  Score=42.61  Aligned_cols=96  Identities=9%  Similarity=0.045  Sum_probs=56.2

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCC
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK  107 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~  107 (380)
                      +++++.|...|.+.+-+++..........     - +.| ......+++..+..|+.|++.+..|..+...+-+.+.-..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~-----~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~  136 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI-----L-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG  136 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeee-----h-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc
Confidence            45677888888888877665422211111     1 111 1234577899999999999999999988776665443222


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcE
Q psy6984         108 DVLSVAFSVDNRQIVSSSRDKTI  130 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~s~~~d~~v  130 (380)
                      ...+-+..|-...+..+...|.+
T Consensus       137 ~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  137 TFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             eeccceecCCCceEEEEeccceE
Confidence            22333445522334444444444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.21  Score=44.74  Aligned_cols=240  Identities=12%  Similarity=0.123  Sum_probs=137.8

Q ss_pred             eEEEEEccCCCEEEEEeCCC-cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEe
Q psy6984          67 ISDIVLSSDGNYALSGSWDK-TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      ...+.+.+++..+....... .+..-+............-......++.++++..+. +...++.+.+.|..........
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~  112 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI  112 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence            44577788885554443322 344444432222221111112345678888888554 4555688999986555444443


Q ss_pred             eCCCcCcEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE-cCCCcEEEEE
Q psy6984         145 EDGHSDWVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG-GKDMNAMLWD  221 (380)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d  221 (380)
                      ..+.  ....+++.|++.. +.++-.  .++++.+.|-.+.+.......-..+ ..++++|+|+.+... ..++.+.++|
T Consensus       113 ~vG~--~P~~~~~~~~~~~-vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         113 PVGL--GPVGLAVDPDGKY-VYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             eecc--CCceEEECCCCCE-EEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence            3333  3457888887654 333433  4789999998887766554332233 889999999965554 4789999999


Q ss_pred             CCCCcEEE-----EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc-ceeEEEEeecCC
Q psy6984         222 LNDGKHLH-----TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR-DVLSVAFSVDNR  295 (380)
Q Consensus       222 ~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~  295 (380)
                      ........     ..........+.++|++.+.-......   .+..+...+...+........... ....+..+|+|+
T Consensus       189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~  265 (381)
T COG3391         189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGK  265 (381)
T ss_pred             CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC---CCceEEEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence            76665443     122334455667777766432221110   023455555555544332112112 345678899999


Q ss_pred             EEEEeeC-CCcEEEEeccc
Q psy6984         296 QIVSSSR-DKTIKLWNTLA  313 (380)
Q Consensus       296 ~l~s~~~-dg~v~iw~~~~  313 (380)
                      .+..... .+.|.+-|...
T Consensus       266 ~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         266 AAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             EEEEEecCCCeEEEEeCCC
Confidence            8887644 36777766544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.02  E-value=0.0025  Score=37.26  Aligned_cols=30  Identities=17%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             CCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       344 ~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      +..|..++|+|...+||.|+.+|.|.+|++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            335778999999999999999999999987

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.99  E-value=0.065  Score=37.74  Aligned_cols=102  Identities=18%  Similarity=0.238  Sum_probs=63.5

Q ss_pred             eEEEEEc---cCC-CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE
Q psy6984          67 ISDIVLS---SDG-NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  142 (380)
Q Consensus        67 v~~~~~~---~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~  142 (380)
                      |+++++.   .|| +.|++|+.|..|++|+-  .+.+.++.. ...|+++.-... ..++.+..+|+|-+|+...  ++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            4455543   333 68999999999999974  345555543 356777776554 6799999999999997422  222


Q ss_pred             EeeCCCcCcEEEEEEcc-CC-CCCEEEEEeCCCeEE
Q psy6984         143 IVEDGHSDWVSCVRFSP-NH-QNPIIVSAGWDRMVK  176 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~-~~-~~~~l~s~~~d~~v~  176 (380)
                      ....  ...+.++.+.. ++ ..+-|++|=.+|.|-
T Consensus        76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2222  22355555432 22 123577777777664

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.85  E-value=0.25  Score=46.80  Aligned_cols=134  Identities=15%  Similarity=0.118  Sum_probs=73.3

Q ss_pred             cceEEEEeCCCCCCeEEEee------CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-----
Q psy6984          17 GWVTQIATNPKFPDTILSCS------RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-----   85 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~------~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----   85 (380)
                      ..+.+...+|+ ++.++..-      .|+.-.+|-.......  .+  ...+.  ..+.-.|+|||+.|.+....     
T Consensus       350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~--lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~  422 (591)
T PRK13616        350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQ--VLEGH--SLTRPSWSLDADAVWVVVDGNTVVR  422 (591)
T ss_pred             cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCCCcc--ee--eecCC--CCCCceECCCCCceEEEecCcceEE
Confidence            35677788887 45544433      3455556644322111  11  11222  36778899998877766432     


Q ss_pred             -------CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEE---eCCCcceEEE-----eeCCCcC
Q psy6984          86 -------KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW---NTLAHCKFTI-----VEDGHSD  150 (380)
Q Consensus        86 -------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw---d~~~~~~~~~-----~~~~~~~  150 (380)
                             +.+.+.++..+....   ...+.|..+.|+|||..++... ++.|.+=   ....+. ...     +..+-.+
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~  497 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGD  497 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCC
Confidence                   344444554443332   3356799999999999988665 4666552   212221 111     2222333


Q ss_pred             cEEEEEEccCCC
Q psy6984         151 WVSCVRFSPNHQ  162 (380)
Q Consensus       151 ~v~~~~~~~~~~  162 (380)
                      .+..+.|..++.
T Consensus       498 ~~~~l~W~~~~~  509 (591)
T PRK13616        498 TAVSLDWRTGDS  509 (591)
T ss_pred             ccccceEecCCE
Confidence            356788887654

>KOG2444|consensus

Probab=96.83  E-value=0.0026  Score=50.47  Aligned_cols=140  Identities=11%  Similarity=0.062  Sum_probs=74.9

Q ss_pred             EEEEeCCCcEEEEECCCCceeeee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEE
Q psy6984          79 ALSGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRF  157 (380)
Q Consensus        79 l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~  157 (380)
                      +..-+.||.|.=+++..-+....- .-|..-   .....-+..++.|+.+|.|.+|.........-....-...+.|.  
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--  107 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--  107 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec--
Confidence            444566777776665432221111 011111   11112356788999999999997542110000000111122222  


Q ss_pred             ccCCC-CCEEEEEeCCCeEEEEeCCCceeeEeeeCCc-cceEEEEEcCCCCEEEEE--cCCCcEEEEECC
Q psy6984         158 SPNHQ-NPIIVSAGWDRMVKVWNLTNCKLKINHSGHT-GYLNTVTVSPDGSLCASG--GKDMNAMLWDLN  223 (380)
Q Consensus       158 ~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~  223 (380)
                      .|.++ ..+..+++.|+.||.|++.-.+..-....|. ..+.....+..++.++.+  |.|..++.|++.
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            23332 2366789999999999998766554444555 445555555566666666  666777777664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.79  E-value=0.4  Score=43.67  Aligned_cols=158  Identities=19%  Similarity=0.162  Sum_probs=85.4

Q ss_pred             ceEEEEEccCCCEEEEE-eCCC----cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC-----------c
Q psy6984          66 FISDIVLSSDGNYALSG-SWDK----TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK-----------T  129 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~-~~d~----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~-----------~  129 (380)
                      .+....++|||+++|-+ +..|    .|++.|+.+++.+....... ....+.|.+|++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999998854 4444    59999999997765321111 122389999998877665433           3


Q ss_pred             EEEEeCCCcce--EEEeeCCCcCc-EEEEEEccCCCCCEEEEEeC--C-CeEEEEeCCCc-----eeeEeeeCCccceEE
Q psy6984         130 IKLWNTLAHCK--FTIVEDGHSDW-VSCVRFSPNHQNPIIVSAGW--D-RMVKVWNLTNC-----KLKINHSGHTGYLNT  198 (380)
Q Consensus       130 v~iwd~~~~~~--~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~~--d-~~v~iwd~~~~-----~~~~~~~~~~~~i~~  198 (380)
                      |..|.+.+...  ....+...... ...+..+++++. +++....  + ..+.+.|+...     ..........+....
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~-l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY-LFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE-EEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE-EEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            66676544322  23333333333 567788887653 3333322  2 45788888764     222222222222233


Q ss_pred             EEEcCCCCEEEEEc---CCCcEEEEECCCCc
Q psy6984         199 VTVSPDGSLCASGG---KDMNAMLWDLNDGK  226 (380)
Q Consensus       199 ~~~~~~~~~l~~~~---~d~~i~i~d~~~~~  226 (380)
                      +... .+.+++...   ..+.|...++....
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~  312 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPS  312 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence            3333 444444332   34677777777665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395|consensus

Probab=96.70  E-value=0.029  Score=50.24  Aligned_cols=130  Identities=16%  Similarity=0.256  Sum_probs=80.1

Q ss_pred             CcceeeEEeEEecCcccceEEEEeCCCC------CCeEEEeeCCCeEEEeecCCCCCCc--ccccccccCCCcceEEEEE
Q psy6984           1 MSTETLQLRGTLNGHNGWVTQIATNPKF------PDTILSCSRDNTLIIWKLTRDDTNY--GVPQKRLKGHSHFISDIVL   72 (380)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~~~~~~h~~~v~~~~~   72 (380)
                      |+.+..+++-+-.=|.. |+-+.+.|..      +..=+.|-.|+.|.-||.+-+....  ....+.+.+ .....|.+-
T Consensus       361 lDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~-k~nFsc~aT  438 (644)
T KOG2395|consen  361 LDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST-KNNFSCFAT  438 (644)
T ss_pred             eecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc-ccccceeee
Confidence            45566666665554444 6666666653      1122335567788888876433210  011111221 223456655


Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy6984          73 SSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        73 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd  134 (380)
                      ..+| ++++||.+|.|++||-...+....+++...+|..+..+.||..++..+. ..+.+-+
T Consensus       439 T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~  498 (644)
T KOG2395|consen  439 TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLID  498 (644)
T ss_pred             cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEE
Confidence            5555 8999999999999997444444456778889999999999998876654 4555544

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.38  Score=41.43  Aligned_cols=208  Identities=13%  Similarity=0.103  Sum_probs=111.7

Q ss_pred             EeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984          23 ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF  102 (380)
Q Consensus        23 ~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  102 (380)
                      .|.+..+.++.+--..+.|.-|+......      ..+ .+...+.++..-..+..|+++..  .+++++..++.....+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~------~~~-~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~  101 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK------RVF-PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLL  101 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce------EEE-ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEe
Confidence            35555332444444566666676542211      111 11222344443333445555443  3667776655542222


Q ss_pred             c----cc-CCCeEEEEEeCCCCEEEEEeC-----------CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984         103 E----DH-TKDVLSVAFSVDNRQIVSSSR-----------DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus       103 ~----~h-~~~v~~~~~~~~~~~~~s~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      .    +. .....++...|+|.+.++...           -|.+...|. ........ ..+-..-+.++|+|+++. ++
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~t-ly  178 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKT-LY  178 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCE-EE
Confidence            1    11 123457788899987765444           122333332 22222222 233334567999999763 44


Q ss_pred             EEEeCCCeEEEEeCCC------c-eeeEeeeCCccceEEEEEcCCCCEEEEEcCCC-cEEEEECCCCcEEEEEEec-Cce
Q psy6984         167 VSAGWDRMVKVWNLTN------C-KLKINHSGHTGYLNTVTVSPDGSLCASGGKDM-NAMLWDLNDGKHLHTLVHN-DII  237 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~------~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~-~~i  237 (380)
                      ++=+..+.|.-|++..      . ..........+..-.++.+.+|.+.+++..+| .|..|+.. ++.+..+..+ ..+
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~  257 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRP  257 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCC
Confidence            5555567888887752      1 11222223456677788889998876554444 99999988 8888887766 556


Q ss_pred             EEEEee
Q psy6984         238 TALCFS  243 (380)
Q Consensus       238 ~~~~~~  243 (380)
                      ++++|.
T Consensus       258 t~~~Fg  263 (307)
T COG3386         258 TNPAFG  263 (307)
T ss_pred             ccceEe
Confidence            666663

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.63  E-value=0.42  Score=41.80  Aligned_cols=142  Identities=15%  Similarity=0.234  Sum_probs=81.6

Q ss_pred             CCEEEEEcC----------CCcEEEEECCCC----cE---EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         205 GSLCASGGK----------DMNAMLWDLNDG----KH---LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       205 ~~~l~~~~~----------d~~i~i~d~~~~----~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      .++++.|..          .|++.++++...    ..   +.....+.++.+++--.+. . .+       .....+.+|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~-l-v~-------~~g~~l~v~  112 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGR-L-VV-------AVGNKLYVY  112 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTE-E-EE-------EETTEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCE-E-EE-------eecCEEEEE
Confidence            456776642          289999999884    12   2334567788888755322 1 11       124667788


Q ss_pred             EcCCce-eeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc-ceeeeEeecccceEEEeeCcccccccCCCCCC
Q psy6984         268 PINHGK-METPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVDLETKKMVEELRPDVVSQSTKADPP  345 (380)
Q Consensus       268 ~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (380)
                      .+...+ +.... ....++........+++++.|+....|.++.... +.++..+.                  ....+.
T Consensus       113 ~l~~~~~l~~~~-~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va------------------~d~~~~  173 (321)
T PF03178_consen  113 DLDNSKTLLKKA-FYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVA------------------RDYQPR  173 (321)
T ss_dssp             EEETTSSEEEEE-EE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEE------------------EESS-B
T ss_pred             EccCcccchhhh-eecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEE------------------ecCCCc
Confidence            887766 33221 2222223444445577999998888888775422 11111110                  011234


Q ss_pred             ceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         346 MCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       346 ~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++.++.+-+|++.++++..+|.+.++...
T Consensus       174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             cEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            57788888777788889999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2079|consensus

Probab=96.57  E-value=0.017  Score=55.96  Aligned_cols=98  Identities=17%  Similarity=0.372  Sum_probs=71.8

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeE
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL  110 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  110 (380)
                      .++.|+..|.+...|....-.    +...-..-..+|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..|..+.+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~----~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLG----PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccc----hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            577788888888877653211    1111223356799999999999999999999999999999999988877766654


Q ss_pred             E---EEEeCCCCEEEEEeCCCcEEEEe
Q psy6984         111 S---VAFSVDNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus       111 ~---~~~~~~~~~~~s~~~d~~v~iwd  134 (380)
                      .   +.+..++..++++...|.  +|.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            4   344456667888877775  565

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.49  E-value=0.014  Score=34.11  Aligned_cols=30  Identities=13%  Similarity=0.122  Sum_probs=27.6

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      ..|.++.|+|..++||.+..+|.|.+|.++
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            458999999999999999999999999983

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.48  E-value=0.64  Score=42.13  Aligned_cols=170  Identities=12%  Similarity=0.135  Sum_probs=85.6

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-------EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      +.+.++.|+.+ ..|+.-..||.+++||+.... ...+       ......+....+..+|-.++++  ++.+.+-.-..
T Consensus        81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCcc
Confidence            57888999875 567778899999999986433 1111       1111112222333355333333  33333332111


Q ss_pred             cc-eEEEeeC---------CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCE
Q psy6984         138 HC-KFTIVED---------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL  207 (380)
Q Consensus       138 ~~-~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  207 (380)
                      .. .......         .+........+..+  ....+....++.+.+.+-...+.   . ...+++..+++||+|++
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~--~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~  230 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD--RVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKF  230 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecC--cceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCE
Confidence            11 0000000         00000000112221  11233333444555333322111   1 12357999999999999


Q ss_pred             EEEEcCCCcEEEEECCCCcEEEEEEec--CceEEEEeec
Q psy6984         208 CASGGKDMNAMLWDLNDGKHLHTLVHN--DIITALCFSP  244 (380)
Q Consensus       208 l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~~~  244 (380)
                      +|.-..+|.+.+.+..-.+.+..+..+  .....+.|.-
T Consensus       231 iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG  269 (410)
T PF04841_consen  231 IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG  269 (410)
T ss_pred             EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence            999999999999887666655555433  4555666654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.06  E-value=1.1  Score=40.67  Aligned_cols=51  Identities=12%  Similarity=0.369  Sum_probs=37.6

Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      .|+||+.. |+.+.++.-..+.+.++.|+.+ ..|+.-..||.++++|.....
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence            48888864 5555555444488999999875 556677799999999976544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.99  E-value=1.4  Score=41.40  Aligned_cols=194  Identities=12%  Similarity=0.106  Sum_probs=101.6

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcc-----e-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF-----I-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE  103 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~-----v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~  103 (380)
                      ..++.++.++.|.-.|....+................     + ..+++  .+..++.++.|+.|.-.|..+|+.+....
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            4677777778887777655433322111100000000     0 01222  24577888899999999999999887654


Q ss_pred             c--cCC--CeEEEEEeCCCCEEEEEe------CCCcEEEEeCCCcceEEEeeCCCcC-----------------------
Q psy6984         104 D--HTK--DVLSVAFSVDNRQIVSSS------RDKTIKLWNTLAHCKFTIVEDGHSD-----------------------  150 (380)
Q Consensus       104 ~--h~~--~v~~~~~~~~~~~~~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~-----------------------  150 (380)
                      .  +..  .+.+--.-.++ .++.+.      .++.|..+|..++..+.........                       
T Consensus       148 ~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             cccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            2  111  11111011134 444443      2578888887665544322111000                       


Q ss_pred             -------cEE-EEEEccCCCCCEEEEEe-C----CC-----------eEEEEeCCCceeeEeeeC--Cc-------cceE
Q psy6984         151 -------WVS-CVRFSPNHQNPIIVSAG-W----DR-----------MVKVWNLTNCKLKINHSG--HT-------GYLN  197 (380)
Q Consensus       151 -------~v~-~~~~~~~~~~~~l~s~~-~----d~-----------~v~iwd~~~~~~~~~~~~--~~-------~~i~  197 (380)
                             .++ ...+.|..  .+++.+. .    ++           .|.-.|++++++...++.  |.       ....
T Consensus       227 ~~~~gg~~~W~~~s~D~~~--~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPET--NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             ccccCCCCccCceeEcCCC--CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                   011 12344432  2333322 1    12           566678888887765543  21       1112


Q ss_pred             EEEEcCCCC---EEEEEcCCCcEEEEECCCCcEE
Q psy6984         198 TVTVSPDGS---LCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       198 ~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      -+.+..+|+   .++.+.++|.+++.|..+|+.+
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            223335676   7889999999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.97  E-value=0.78  Score=38.24  Aligned_cols=101  Identities=21%  Similarity=0.357  Sum_probs=62.5

Q ss_pred             EEEEeCCCCCCeEEEeeCCCeE-EEeecCCCCCCcccc---cccccCCCcceEEEEEccCCCEEEEEeCC-----CcEEE
Q psy6984          20 TQIATNPKFPDTILSCSRDNTL-IIWKLTRDDTNYGVP---QKRLKGHSHFISDIVLSSDGNYALSGSWD-----KTLRL   90 (380)
Q Consensus        20 ~~i~~~~~~~~~l~t~~~dg~v-~vw~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~v   90 (380)
                      ..|.++|..+.-++-+-.=|+. .++|....+....++   ...+.+|      =.|||||.+|...-.|     |.|-|
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGv  144 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGV  144 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEE
Confidence            3466666655555555444443 366654332221111   1123444      3589999999876443     67999


Q ss_pred             EECCCC-ceeeeecccCCCeEEEEEeCCCCEEEEEeC
Q psy6984          91 WDLAAG-KTTRRFEDHTKDVLSVAFSVDNRQIVSSSR  126 (380)
Q Consensus        91 wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~  126 (380)
                      ||...+ +.+.++..|.-....+.+.+||+.++.+..
T Consensus       145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             EecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            998743 344566777767788999999999887643

>KOG2079|consensus

Probab=95.91  E-value=0.047  Score=53.15  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=65.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCce-eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC---CCcC
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED---GHSD  150 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~  150 (380)
                      .+..++.|+..|.+-..|+..+-. ...=..-.++|++++|+.+|..++.|-.+|.|.+||+........+..   .++.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            455788888889998888765411 111122357899999999999999999999999999876555444332   1222


Q ss_pred             cEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984         151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~  180 (380)
                      -+....++   ++..++++...|.  +|.+
T Consensus       178 vi~v~~t~---~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTS---QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeC---CCcEEEEccCCCc--eEEE
Confidence            22223332   3335777766665  4543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.84  E-value=0.93  Score=38.93  Aligned_cols=150  Identities=16%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc-ceEEE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-CKFTI  143 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~-~~~~~  143 (380)
                      ..+..+..++||+++++++......-||--...-...-+.....|..+.|.|++...+.+ +.+.+++=+.... .....
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence            457778888999988888665555566642211122222345779999999998876655 8888877652111 11111


Q ss_pred             --eeC-CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee---CCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984         144 --VED-GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS---GHTGYLNTVTVSPDGSLCASGGKDMNA  217 (380)
Q Consensus       144 --~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i  217 (380)
                        ... ...-.+-.+++.++.  .+.++|+ .|.+. .....++--...+   .-......+.|.++.+-++.| .+|.|
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~--~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~l  298 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPN--EIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVL  298 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS---EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEE
T ss_pred             ccCCcccCceeeEEEEecCCC--CEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEE
Confidence              111 111226778887653  3555555 44432 2222222111111   123457788887665555544 66766


Q ss_pred             EEE
Q psy6984         218 MLW  220 (380)
Q Consensus       218 ~i~  220 (380)
                      .-|
T Consensus       299 l~~  301 (302)
T PF14870_consen  299 LRY  301 (302)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.81  E-value=0.58  Score=43.03  Aligned_cols=121  Identities=9%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             ccCCCcceEEEEEccC----CCEEEEEeCCCcEEEEECCC-----CceeeeecccCC---C--eEEEEEeCCCCEEEEEe
Q psy6984          60 LKGHSHFISDIVLSSD----GNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTK---D--VLSVAFSVDNRQIVSSS  125 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~----~~~l~s~~~d~~i~vwd~~~-----~~~~~~~~~h~~---~--v~~~~~~~~~~~~~s~~  125 (380)
                      ..|.-..|..+.|.|-    .--|++......|.||.+..     ++.+.....+-+   +  ...+.|+|....++.-.
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT  131 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT  131 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence            4455567899999874    32455666678999999852     233222211111   1  24577999888776544


Q ss_pred             CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984         126 RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       126 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                      ....-.+++.................|.|.+|.++++..+++.| ..-.-.+||-.
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvG-SsLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVG-SSLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeC-CeEEEEEecCc
Confidence            44333445544333333333345567999999998876444444 34456788854

>PHA02713 hypothetical protein; Provisional

Probab=95.59  E-value=2  Score=40.84  Aligned_cols=145  Identities=10%  Similarity=0.047  Sum_probs=69.2

Q ss_pred             cCCCEEEEEeCCC-----cEEEEECCCCceee--eecccCCCeEEEEEeCCCCEEEEEeCCC------------------
Q psy6984          74 SDGNYALSGSWDK-----TLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSSSRDK------------------  128 (380)
Q Consensus        74 ~~~~~l~s~~~d~-----~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~s~~~d~------------------  128 (380)
                      -+|+..+.||.++     .+..||..+++-..  .+.........+  .-++...+.|+.++                  
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccccccccc
Confidence            3677778888764     47889987653221  111111111111  23577777777542                  


Q ss_pred             -----cEEEEeCCCcceEEEeeCCCcCcE-EEEEEccCCCCCEEEEEeCC------CeEEEEeCCC-ceee--EeeeCCc
Q psy6984         129 -----TIKLWNTLAHCKFTIVEDGHSDWV-SCVRFSPNHQNPIIVSAGWD------RMVKVWNLTN-CKLK--INHSGHT  193 (380)
Q Consensus       129 -----~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~~-~~~~--~~~~~~~  193 (380)
                           .+..||..+..-. ....-..... .+++.. +  +.+.+.||.+      ..+..||..+ .+-.  ...+...
T Consensus       428 ~~~~~~ve~YDP~td~W~-~v~~m~~~r~~~~~~~~-~--~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWE-TLPNFWTGTIRPGVVSH-K--DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             ccccceEEEECCCCCeEe-ecCCCCcccccCcEEEE-C--CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                 3566775443211 1111111111 122222 1  2245556553      2466788876 3322  2222222


Q ss_pred             cceEEEEEcCCCCEEEEEcCCC--cEEEEECCCCc
Q psy6984         194 GYLNTVTVSPDGSLCASGGKDM--NAMLWDLNDGK  226 (380)
Q Consensus       194 ~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~  226 (380)
                      .....+.+  +|++.++|+.++  .+..||..+.+
T Consensus       504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             ccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence            22222222  678888999887  55666665543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.47  E-value=1.5  Score=37.92  Aligned_cols=138  Identities=16%  Similarity=0.130  Sum_probs=76.3

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCcceEEE--eeCCCcC---
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------RDKTIKLWNTLAHCKFTI--VEDGHSD---  150 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------~d~~v~iwd~~~~~~~~~--~~~~~~~---  150 (380)
                      +.++|+|..+++.+-.+..-  -.-.+..+||++.+++++          +...|.+||..+-.....  +...+..   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            37899999888877665432  222356789999888654          345788999765332221  2111111   


Q ss_pred             -cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC-CCcEE
Q psy6984         151 -WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN-DGKHL  228 (380)
Q Consensus       151 -~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~  228 (380)
                       ..+..+++.+++..++.--+--..|.+.|+...+......-. +  +...+-...+-|.+-+.||.+.-..+. .|+..
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C--EEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence             112245555544322222333456777777777765544321 1  112222123568888999999999887 45543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1916|consensus

Probab=95.03  E-value=0.033  Score=53.13  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=68.9

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC--CcccccccccCCCcc---eEEEEEccCCCEEEEEeCCCcE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT--NYGVPQKRLKGHSHF---ISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~--~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      |..|.|-.|.|....-..++  -.-|...||+++.-..  ...+.....+.....   |.-+-|.++.-++..+-.++.|
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI  207 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence            44556666665432112222  3346888999864211  111111111122222   3333345567788888899999


Q ss_pred             EEEECCCCceeeeecccCCCeEEE-----------EEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSV-----------AFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~-----------~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      ++.+.+.... ..+.+|...++++           ..+|||..++.++.||.+++|..
T Consensus       208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            9877654322 3334465544432           25899999999999999999974

>KOG4499|consensus

Probab=94.99  E-value=1.2  Score=36.13  Aligned_cols=116  Identities=15%  Similarity=0.134  Sum_probs=72.2

Q ss_pred             EEeEEecCcc--------cceEEEEeCCCCCCeEEEeeCCCeEEEeecC--CCCCCc-----ccccccccCCCcceEEEE
Q psy6984           7 QLRGTLNGHN--------GWVTQIATNPKFPDTILSCSRDNTLIIWKLT--RDDTNY-----GVPQKRLKGHSHFISDIV   71 (380)
Q Consensus         7 ~~~~~~~~h~--------~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~--~~~~~~-----~~~~~~~~~h~~~v~~~~   71 (380)
                      +|..-+.+|.        +.-+.++|..+...+..+=+.+-+|.-||.+  ..+...     .+...+...|.. --..+
T Consensus       140 ~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~-PDGm~  218 (310)
T KOG4499|consen  140 ELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE-PDGMT  218 (310)
T ss_pred             EEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC-CCcce
Confidence            3555555554        3445677876644556666777888888843  222111     111111111111 11344


Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEe-CCCCEEEE
Q psy6984          72 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVS  123 (380)
Q Consensus        72 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s  123 (380)
                      +..+|++.++.-..+.|...|..+|+.+.++.--...|++++|- ++-..+.+
T Consensus       219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence            46688888888888999999999999999988778889999995 33334443

>PHA02713 hypothetical protein; Provisional

Probab=94.93  E-value=2.4  Score=40.33  Aligned_cols=62  Identities=11%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCceeeeeccc--CCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCc
Q psy6984          75 DGNYALSGSWD------KTLRLWDLAAGKTTRRFEDH--TKDVLSVAFSVDNRQIVSSSRDK-----TIKLWNTLAH  138 (380)
Q Consensus        75 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~s~~~d~-----~v~iwd~~~~  138 (380)
                      ++...+.||.+      ..+..||..+++-. .+..-  ...-.+++ .-++...+.|+.++     .+..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            56777788754      34778888765321 11110  11111222 23577777787654     4777886543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.75  E-value=2.1  Score=40.65  Aligned_cols=113  Identities=17%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-----c
Q psy6984         109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-----C  183 (380)
Q Consensus       109 v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-----~  183 (380)
                      +.-+.-+.-++..+.-+....+.|||...........-...+.|.++.|...+....+++.|....|.++--..     .
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence            33444444455445555566899999876543222222346779999998776666788888899999985421     1


Q ss_pred             ----e--eeEeeeCCc-cceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         184 ----K--LKINHSGHT-GYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       184 ----~--~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                          .  .......++ .+|....|.++|.+++.++  +.+.++|-.
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence                1  112233343 5688889999998776553  468888643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.39  E-value=2.7  Score=35.32  Aligned_cols=146  Identities=14%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             ceEEEEEccCCCEEEEEe---CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEe-CCCc-ce
Q psy6984          66 FISDIVLSSDGNYALSGS---WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN-TLAH-CK  140 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd-~~~~-~~  140 (380)
                      .+...++++|++.++...   ....++++..  +....... ....+..-+|++++...+....+...+++. .... ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578899999999877655   2334555543  33333221 223677889999988777766666667663 1121 11


Q ss_pred             EEEeeCCCcC-cEEEEEEccCCCCCEEEE-EeCCCeEEEEeCC---Cc--ee----eEeeeCCccceEEEEEcCCCCEEE
Q psy6984         141 FTIVEDGHSD-WVSCVRFSPNHQNPIIVS-AGWDRMVKVWNLT---NC--KL----KINHSGHTGYLNTVTVSPDGSLCA  209 (380)
Q Consensus       141 ~~~~~~~~~~-~v~~~~~~~~~~~~~l~s-~~~d~~v~iwd~~---~~--~~----~~~~~~~~~~i~~~~~~~~~~~l~  209 (380)
                      .......... .|..++++|++....++. ...++.|.+=-+.   .+  ..    ..........+..++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            1112111111 799999999987644443 2334666655432   11  01    011112245788999999998877


Q ss_pred             EEcCC
Q psy6984         210 SGGKD  214 (380)
Q Consensus       210 ~~~~d  214 (380)
                      .+...
T Consensus       182 ~~~~~  186 (253)
T PF10647_consen  182 LGRSA  186 (253)
T ss_pred             EeCCC
Confidence            66554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377|consensus

Probab=94.35  E-value=3.4  Score=37.02  Aligned_cols=149  Identities=13%  Similarity=0.132  Sum_probs=86.2

Q ss_pred             EEeEEecCccc------ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE
Q psy6984           7 QLRGTLNGHNG------WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL   80 (380)
Q Consensus         7 ~~~~~~~~h~~------~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~   80 (380)
                      -+.+++-.|..      .-+.+-+...+ ++++ |-..|.+.-|.+...+  ..++...-....+.|.++.|++|.+.||
T Consensus         7 alyhelihhPslfcnipesngvFfDDaN-kqlf-avrSggatgvvvkgpn--dDVpiSfdm~d~G~I~SIkFSlDnkilA   82 (657)
T KOG2377|consen    7 ALYHELIHHPSLFCNIPESNGVFFDDAN-KQLF-AVRSGGATGVVVKGPN--DDVPISFDMDDKGEIKSIKFSLDNKILA   82 (657)
T ss_pred             ceEEEEecCchhhccCCcccceeeccCc-ceEE-EEecCCeeEEEEeCCC--CCCCceeeecCCCceeEEEeccCcceEE
Confidence            35555555542      23334444432 3333 3334677888776543  2234333334456899999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeeee----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEE
Q psy6984          81 SGSWDKTLRLWDLAAGKTTRRF----EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR  156 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  156 (380)
                      .--.|.+|.+.+....+....+    +.....|....|+.. .-+|.-+..| +-+|..............|.-.|+--.
T Consensus        83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~  160 (657)
T KOG2377|consen   83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYM  160 (657)
T ss_pred             EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEE
Confidence            9999999999998665544332    233445888889765 4455444444 556654332222222234555565566


Q ss_pred             EccCC
Q psy6984         157 FSPNH  161 (380)
Q Consensus       157 ~~~~~  161 (380)
                      |+++.
T Consensus       161 yc~et  165 (657)
T KOG2377|consen  161 YCPET  165 (657)
T ss_pred             Ecccc
Confidence            66654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.16  E-value=4.4  Score=36.91  Aligned_cols=203  Identities=17%  Similarity=0.158  Sum_probs=96.6

Q ss_pred             eEEEEeCCCCCCeEE-EeeCCC----eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC-------
Q psy6984          19 VTQIATNPKFPDTIL-SCSRDN----TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK-------   86 (380)
Q Consensus        19 v~~i~~~~~~~~~l~-t~~~dg----~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-------   86 (380)
                      +....++|+ ++++| +-+..|    ++++.|+......    ...+..  .....+.|.+|++.|+-...+.       
T Consensus       126 ~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l----~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  126 LGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFL----PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEE----EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred             eeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCc----CCcccc--cccceEEEeCCCCEEEEEEeCcccccccC
Confidence            335678887 45544 434444    5889988654211    111111  1122389999988876655433       


Q ss_pred             ----cEEEEECCCCcee--eeecccCCC--eEEEEEeCCCCEEEEEeCC-C---cEEEEeCCCc----ceEEEeeCCCcC
Q psy6984          87 ----TLRLWDLAAGKTT--RRFEDHTKD--VLSVAFSVDNRQIVSSSRD-K---TIKLWNTLAH----CKFTIVEDGHSD  150 (380)
Q Consensus        87 ----~i~vwd~~~~~~~--~~~~~h~~~--v~~~~~~~~~~~~~s~~~d-~---~v~iwd~~~~----~~~~~~~~~~~~  150 (380)
                          .|+.|.+.+....  ..++.....  ...+..++|+++++..+.. .   .+.+-+....    .....+......
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~  278 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG  278 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence                3788888765433  334433332  5688899999987754332 2   3555555442    122222222222


Q ss_pred             cEEEEEEccCCCCCEEEEE--eCCCeEEEEeCCCcee---eEeeeCCcc--ceEEEEEcCCCCEE-EEEcCC--CcEEEE
Q psy6984         151 WVSCVRFSPNHQNPIIVSA--GWDRMVKVWNLTNCKL---KINHSGHTG--YLNTVTVSPDGSLC-ASGGKD--MNAMLW  220 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~---~~~~~~~~~--~i~~~~~~~~~~~l-~~~~~d--~~i~i~  220 (380)
                      ....+...  +...++.|.  ..++.|...++.....   ...+..+..  .+..+..  .+.+| +.-..+  ..|+++
T Consensus       279 ~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  279 VEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             -EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence            22223222  222233332  3345676677776542   223333433  3444443  34444 333333  366778


Q ss_pred             ECCCCcEEEEEE
Q psy6984         221 DLNDGKHLHTLV  232 (380)
Q Consensus       221 d~~~~~~~~~~~  232 (380)
                      ++..+.......
T Consensus       355 ~~~~~~~~~~~~  366 (414)
T PF02897_consen  355 DLDDGKESREIP  366 (414)
T ss_dssp             ETT-TEEEEEEE
T ss_pred             ECCCCcEEeeec
Confidence            887344444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.06  E-value=3.6  Score=35.57  Aligned_cols=141  Identities=17%  Similarity=0.105  Sum_probs=76.9

Q ss_pred             cceEEEEEccCCCEEEEEeC-----------CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CCcEEE
Q psy6984          65 HFISDIVLSSDGNYALSGSW-----------DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKL  132 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~-----------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~i  132 (380)
                      ...+.+.+.|+|.+-++.-.           -|.|+.+|. .+...+.+..+-.--..++||||++.+..+-. .+.+.-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            45678889999987665433           133555554 45566655555555568999999987765544 467776


Q ss_pred             EeCCC-----cc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-eEEEEeCCCceeeEeeeCCccceEEEEEc-CC
Q psy6984         133 WNTLA-----HC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-MVKVWNLTNCKLKINHSGHTGYLNTVTVS-PD  204 (380)
Q Consensus       133 wd~~~-----~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~  204 (380)
                      |+...     .. .............-.++...++  .+.+++..+| .|..|+.. +++.....-....+++++|- |+
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~  266 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPD  266 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCC
Confidence            65431     11 1011111111112233444433  2443444444 88888887 56655555444556666664 44


Q ss_pred             CCEEE
Q psy6984         205 GSLCA  209 (380)
Q Consensus       205 ~~~l~  209 (380)
                      .+.|.
T Consensus       267 ~~~L~  271 (307)
T COG3386         267 LNTLY  271 (307)
T ss_pred             cCEEE
Confidence            44433

>KOG1897|consensus

Probab=94.05  E-value=6.8  Score=38.74  Aligned_cols=174  Identities=10%  Similarity=0.121  Sum_probs=95.6

Q ss_pred             eEEEEeCCCceeeEeeeC----CccceEEEEEcCC-CCEEEEEc----------CCCcEEEEECCCCcEEEE---EEecC
Q psy6984         174 MVKVWNLTNCKLKINHSG----HTGYLNTVTVSPD-GSLCASGG----------KDMNAMLWDLNDGKHLHT---LVHND  235 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~----------~d~~i~i~d~~~~~~~~~---~~~~~  235 (380)
                      .++++|-++.+....+.-    ....+.++.|..| +.++++|.          ..|+|.+|.......++.   ...++
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            366777766554332211    1123555567666 66777774          347888887766333332   23344


Q ss_pred             ceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         236 IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       236 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      .+.++..-.. .+.+        .-...+++|...+++..+.-.++..++..+...-.|..++.|.--+.+.+-....  
T Consensus       831 av~aL~~fng-kllA--------~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~--  899 (1096)
T KOG1897|consen  831 AVYALVEFNG-KLLA--------GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG--  899 (1096)
T ss_pred             ceeehhhhCC-eEEE--------ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec--
Confidence            4444432221 1100        0135577888877766555556677888888888899999998878777643211  


Q ss_pred             eeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         316 KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                             ......+        .....++.+..++.+-.+.. ++.+-.+|.+.+-...
T Consensus       900 -------~eg~f~e--------vArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  900 -------DEGNFEE--------VARDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRKD  942 (1096)
T ss_pred             -------cCCceEE--------eehhhCccceeeEEEecCce-EEeecccccEEEEEec
Confidence                   1111111        11233455666666544444 4445567777665543

>KOG4441|consensus

Probab=93.89  E-value=6.1  Score=37.64  Aligned_cols=175  Identities=15%  Similarity=0.138  Sum_probs=80.8

Q ss_pred             CeEEEeeCC-C-----eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc-----EEEEECCCCce
Q psy6984          30 DTILSCSRD-N-----TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT-----LRLWDLAAGKT   98 (380)
Q Consensus        30 ~~l~t~~~d-g-----~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-----i~vwd~~~~~~   98 (380)
                      ...++|+.| |     ++-.||...+. ...++.-....+...+.    .-+|...|+||.||.     |-.||..+.+-
T Consensus       334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~----~l~g~iYavGG~dg~~~l~svE~YDp~~~~W  408 (571)
T KOG4441|consen  334 KLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKRSDFGVA----VLDGKLYAVGGFDGEKSLNSVECYDPVTNKW  408 (571)
T ss_pred             EEEEEccccCCCcccceEEEecCCCCc-eeccCCccCccccceeE----EECCEEEEEeccccccccccEEEecCCCCcc
Confidence            577888888 2     44455544332 11122111122222222    226788899999864     66787766532


Q ss_pred             eeeecccCCCeEEEE-EeCCCCEEEEEeCCC------cEEEEeCCCcceEEEeeCCC-cCcEEEEEEccCCCCCEEEEEe
Q psy6984          99 TRRFEDHTKDVLSVA-FSVDNRQIVSSSRDK------TIKLWNTLAHCKFTIVEDGH-SDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        99 ~~~~~~h~~~v~~~~-~~~~~~~~~s~~~d~------~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      ...- .........+ ..-+|...+.|+.++      .+..||..+..-...-.-.. ..... ++..   ...+++.||
T Consensus       409 ~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~---~~~iYvvGG  483 (571)
T KOG4441|consen  409 TPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL---NGKIYVVGG  483 (571)
T ss_pred             cccC-CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE---CCEEEEECC
Confidence            2211 1111111111 123677778888554      45677754432211110000 11111 2222   123556677


Q ss_pred             CCC-----eEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         171 WDR-----MVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       171 ~d~-----~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      .|+     +|..||..+.+-...  .......+..+  .-+++..+.|+.|+.
T Consensus       484 ~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  484 FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGFDGN  534 (571)
T ss_pred             ccCCCccceEEEEcCCCCceeEcccCccccccccEE--EECCEEEEEecccCc
Confidence            665     367788776543322  11111111111  225677788887753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.87  E-value=3.4  Score=34.67  Aligned_cols=152  Identities=14%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCEEEEEc---CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEE-cC
Q psy6984         195 YLNTVTVSPDGSLCASGG---KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYP-IN  270 (380)
Q Consensus       195 ~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  270 (380)
                      .+.+.++++++..++...   ....++++..  +..............-.|++++.......      ......++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~------~~~~~~~~~~~~   96 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDD------GSGGVRVVRDSA   96 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEc------CCCceEEEEecC
Confidence            577889999999776554   3344555543  33333332333555666766643221110      111222221 11


Q ss_pred             Cceee---eeeeccccceeEEEEeecCCEEEEee---CCCcEEEEecccceeeeEeeccc-ceEEEeeCcccccccCCCC
Q psy6984         271 HGKME---TPFFSLFRDVLSVAFSVDNRQIVSSS---RDKTIKLWNTLAHCKFTIVDLET-KKMVEELRPDVVSQSTKAD  343 (380)
Q Consensus       271 ~~~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  343 (380)
                      .+...   .........|..+++||||..++.-.   .++.|.+=-+..+       ... ...+.   ...  ......
T Consensus        97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~-------~~g~~~~l~---~~~--~~~~~~  164 (253)
T PF10647_consen   97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD-------GDGVPRRLT---GPR--RVAPPL  164 (253)
T ss_pred             CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC-------CCCCcceec---cce--Eecccc
Confidence            22111   11111112799999999998877654   3456655432110       011 00000   000  001112


Q ss_pred             CCceEEEEEecCCCEEEEEeeCC
Q psy6984         344 PPMCLSLAWSTDGQTLFAGYSDN  366 (380)
Q Consensus       344 ~~~~~~~~~s~dg~~l~~g~~dg  366 (380)
                      ...+.+++|.+++.+++.+...+
T Consensus       165 ~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  165 LSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             cCcceeeeecCCCEEEEEeCCCC
Confidence            34577899999999887665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=93.83  E-value=6.1  Score=37.43  Aligned_cols=145  Identities=14%  Similarity=0.124  Sum_probs=64.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCcceEE
Q psy6984          75 DGNYALSGSWD-----KTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRD------KTIKLWNTLAHCKFT  142 (380)
Q Consensus        75 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d------~~v~iwd~~~~~~~~  142 (380)
                      +++..+.||.+     ..+..||..+++-...-. .+...-.+++ ..++...+.|+.+      +.+..||..+..-. 
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS-  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee-
Confidence            57777888865     347788877654222110 0111111222 2356666666632      35677776543211 


Q ss_pred             EeeC-CCcCcEEEEEEccCCCCCEEEEEeCC--------CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEE
Q psy6984         143 IVED-GHSDWVSCVRFSPNHQNPIIVSAGWD--------RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       143 ~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                      .... .....-.+++.. +  +.+++.||.+        ..+..||..+.+-...  ..........+.+  +++.++.|
T Consensus       420 ~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G  494 (534)
T PHA03098        420 KGSPLPISHYGGCAIYH-D--GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVG  494 (534)
T ss_pred             ecCCCCccccCceEEEE-C--CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEc
Confidence            1111 000011122222 1  2244555532        2377888876542211  1111111112222  66777777


Q ss_pred             cCC-----CcEEEEECCCCc
Q psy6984         212 GKD-----MNAMLWDLNDGK  226 (380)
Q Consensus       212 ~~d-----~~i~i~d~~~~~  226 (380)
                      +.+     ..+.+||..+.+
T Consensus       495 G~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        495 GDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcCCcccceeEEEeCCCCE
Confidence            754     356677766543

>KOG4499|consensus

Probab=93.59  E-value=3.3  Score=33.62  Aligned_cols=90  Identities=13%  Similarity=0.159  Sum_probs=60.6

Q ss_pred             EEEEEccCCCCCEEEEEeCCCeEEEEe--CCCce-----eeEeee----CCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         153 SCVRFSPNHQNPIIVSAGWDRMVKVWN--LTNCK-----LKINHS----GHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~~~d~~v~iwd--~~~~~-----~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                      +.++|..+.. .+.++-+.+-.|.-||  ..++.     .+....    ...-....++++.+|++.++.-..++|...|
T Consensus       161 Ngl~Wd~d~K-~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAK-KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCc-EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            3567775433 4566777788888888  33322     122111    1122344566677899888888889999999


Q ss_pred             CCCCcEEEEEEe-cCceEEEEee
Q psy6984         222 LNDGKHLHTLVH-NDIITALCFS  243 (380)
Q Consensus       222 ~~~~~~~~~~~~-~~~i~~~~~~  243 (380)
                      ..+|+.+.++.. ...+++.||.
T Consensus       240 p~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEec
Confidence            999999988865 4568888875

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.44  E-value=5.5  Score=35.63  Aligned_cols=142  Identities=13%  Similarity=0.129  Sum_probs=72.9

Q ss_pred             eEEEEEccCCCEEEEEe-----------CCC-cEEEEECCC--Cce--eeeecccCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy6984          67 ISDIVLSSDGNYALSGS-----------WDK-TLRLWDLAA--GKT--TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI  130 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~-----------~d~-~i~vwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v  130 (380)
                      ...++|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+.........+++.+++ .+ .++.....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCeEE
Confidence            35677888887666542           223 677766443  222  22333333446788998888 44 44455444


Q ss_pred             EEEeCCCc-----ceEEEee---CC---CcCcEEEEEEccCCCCCEEEEEeCC-------------------CeEEEEeC
Q psy6984         131 KLWNTLAH-----CKFTIVE---DG---HSDWVSCVRFSPNHQNPIIVSAGWD-------------------RMVKVWNL  180 (380)
Q Consensus       131 ~iwd~~~~-----~~~~~~~---~~---~~~~v~~~~~~~~~~~~~l~s~~~d-------------------~~v~iwd~  180 (380)
                      ++.|....     ....+..   ..   +......+++.|++.  +.++-+..                   +.|.-++.
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--EEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            44453221     1111111   11   122356788888753  33433211                   33444555


Q ss_pred             CCceeeEeeeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      ...+......+ ....+.++|+|+|+++++-..
T Consensus       172 dg~~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       172 DGGKLRVVAHG-FQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CCCeEEEEecC-cCCCccceECCCCCEEEEccC
Confidence            54444333333 234677899999888776443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.26  E-value=5.3  Score=39.03  Aligned_cols=70  Identities=16%  Similarity=0.251  Sum_probs=41.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCC----------Cceeee---e--------cccCCCeEEEEEeCC---CCE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAA----------GKTTRR---F--------EDHTKDVLSVAFSVD---NRQ  120 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~----------~~~~~~---~--------~~h~~~v~~~~~~~~---~~~  120 (380)
                      ..|..+.++|+|++|+..|..| |.|-.+-.          ++....   +        ..+...|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3588899999999999999865 44444421          111000   0        122334666666664   356


Q ss_pred             EEEEeCCCcEEEEeC
Q psy6984         121 IVSSSRDKTIKLWNT  135 (380)
Q Consensus       121 ~~s~~~d~~v~iwd~  135 (380)
                      |+.-..|+++|+||+
T Consensus       164 l~vLtsdn~lR~y~~  178 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDI  178 (717)
T ss_pred             EEEEecCCEEEEEec
Confidence            666666667777765

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.20  E-value=5.2  Score=38.11  Aligned_cols=107  Identities=15%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-ccCCCeEEEEEe--CCCCEEEEEeCCCcEEEEeCCC------c--
Q psy6984          70 IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLA------H--  138 (380)
Q Consensus        70 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~~~s~~~d~~v~iwd~~~------~--  138 (380)
                      +.-+.-++..++-+....+.|||...+....+-. ...+.|.++.|.  |+++.+++.+....|.++....      .  
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            3334434444444445689999998876433221 346789999984  7999999999999999985311      0  


Q ss_pred             -ceEEEe-eCCCc-CcEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984         139 -CKFTIV-EDGHS-DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       139 -~~~~~~-~~~~~-~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~  180 (380)
                       ..+..+ ...++ .+|.+..|.+++   .|+.|+ +..+.++|-
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G---~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDG---TLVVGS-GNQLFVFDK  155 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCC---eEEEEe-CCEEEEECC
Confidence             011111 12233 457778887765   355444 457777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.11  E-value=3.4  Score=40.30  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=50.5

Q ss_pred             ceeEEEEeecCCEEEEeeCCCcEEEEecccc-eeee-EeecccceEEEeeCcccccccCCCCCCceEEEEEecC---CCE
Q psy6984         284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-CKFT-IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD---GQT  358 (380)
Q Consensus       284 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~  358 (380)
                      +|..+..+|+|.+|+-.|..|.+.+ .+-.. .+.. +-+....-.......+... ........+..+.|+|.   +.+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERF-FTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhh-ccCCCCceEEEEEEcCCCCCCCe
Confidence            5778899999999998887664433 22110 0000 0000000011111111100 11233456789999997   478


Q ss_pred             EEEEeeCCeEEEEEeee
Q psy6984         359 LFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       359 l~~g~~dg~v~iw~~~~  375 (380)
                      |++=..|+.+|+||+..
T Consensus       164 l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEEecCCEEEEEecCC
Confidence            88888999999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.11  E-value=0.6  Score=26.53  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=25.3

Q ss_pred             CCeEEEEEeCCC---CEEEEEeCCCcEEEEeCCC
Q psy6984         107 KDVLSVAFSVDN---RQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus       107 ~~v~~~~~~~~~---~~~~s~~~d~~v~iwd~~~  137 (380)
                      ++|++++|+|+.   .+|+.+-.-+.+.++|++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4788888889999999874

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.10  E-value=3  Score=37.96  Aligned_cols=145  Identities=16%  Similarity=0.184  Sum_probs=91.1

Q ss_pred             ccCCCEEE-EEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCC-------CEEEEEeCCCcEEEEeCCC-cceEEE
Q psy6984          73 SSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-------RQIVSSSRDKTIKLWNTLA-HCKFTI  143 (380)
Q Consensus        73 ~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~~~s~~~d~~v~iwd~~~-~~~~~~  143 (380)
                      ..|.++|+ .|+....++-.|+.-|+.+..+.-|...  -+.|.|+-       ..-+.|-.+..|.--|.+. +.++..
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            44555554 4566678888899999999998877665  34566642       2234555555554445432 222222


Q ss_pred             eeC---CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         144 VED---GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       144 ~~~---~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                      .+.   .-.....|....   ...+++.++..|-||+||--..+....+++-...|-.+....+|.++++.+.. .+.+-
T Consensus       554 ~esKdY~tKn~Fss~~tT---esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~  629 (776)
T COG5167         554 VESKDYKTKNKFSSGMTT---ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT  629 (776)
T ss_pred             eeehhccccccccccccc---cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence            111   011122333322   34589999999999999976555555566667788889999999998877775 56676


Q ss_pred             ECC
Q psy6984         221 DLN  223 (380)
Q Consensus       221 d~~  223 (380)
                      |+.
T Consensus       630 d~~  632 (776)
T COG5167         630 DVP  632 (776)
T ss_pred             ecc
Confidence            653

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.01  E-value=6.6  Score=35.34  Aligned_cols=213  Identities=14%  Similarity=0.186  Sum_probs=83.2

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCC----ceeeeecc---cC----CCeEEEEEeCCCCEEEEEe--CC----CcEEEEeCC
Q psy6984          75 DGNYALSGS-WDKTLRLWDLAAG----KTTRRFED---HT----KDVLSVAFSVDNRQIVSSS--RD----KTIKLWNTL  136 (380)
Q Consensus        75 ~~~~l~s~~-~d~~i~vwd~~~~----~~~~~~~~---h~----~~v~~~~~~~~~~~~~s~~--~d----~~v~iwd~~  136 (380)
                      +.++|+..+ ..+.|+|.|+.+.    +..+.++.   +.    .....+..-|+|+.++|+-  .+    |-+.+.|-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            457788777 5578999999753    22333321   11    1122344457888888753  22    245555543


Q ss_pred             CcceEEEeeCC--CcCcEEEEEEccCCCCCEEEEEeC--------------------CCeEEEEeCCCceeeEeeeCC--
Q psy6984         137 AHCKFTIVEDG--HSDWVSCVRFSPNHQNPIIVSAGW--------------------DRMVKVWNLTNCKLKINHSGH--  192 (380)
Q Consensus       137 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~--------------------d~~v~iwd~~~~~~~~~~~~~--  192 (380)
                      +-......+..  ....-....+.|.  .++++|..+                    ...+.+||+.+.+..+.+.--  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr--~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPR--HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETT--TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             cccccceeccCCCCCCCCCCeEEcCC--CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            32222222221  1222334555553  235555433                    357999999998877655422  


Q ss_pred             ccceEEEEEc--CCCCE-EEEEcCCCcEEEEEC-CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEE
Q psy6984         193 TGYLNTVTVS--PDGSL-CASGGKDMNAMLWDL-NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYP  268 (380)
Q Consensus       193 ~~~i~~~~~~--~~~~~-l~~~~~d~~i~i~d~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (380)
                      ...+..+.|.  |+..+ ++.+.....|..|-- ..++-....     |..   -|..+.            +    -|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~k-----Vi~---ip~~~v------------~----~~~  299 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEK-----VID---IPAKKV------------E----GWI  299 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEE-----EEE---E--EE------------------SS-
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeE-----EEE---CCCccc------------C----ccc
Confidence            2245567664  44444 333334445544422 222210000     000   000000            0    000


Q ss_pred             cCCceeeeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEecccce
Q psy6984         269 INHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHC  315 (380)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~  315 (380)
                      +  ..+...+.....=++++..|.|.++|..+. .+|.||.||+....
T Consensus       300 l--p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  300 L--PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ----GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             c--cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            0  001111111223367889999999987554 69999999987643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.98  E-value=8.3  Score=36.40  Aligned_cols=107  Identities=11%  Similarity=0.110  Sum_probs=62.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccC-CCeE----------EEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHT-KDVL----------SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-~~v~----------~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      +..++.++.++.|+-.|..+|+.+.++.... ..+.          .++.  .+..++.++.|+.+.-.|..+++.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            5577888888999999999998887764321 1111          1122  2346777888898988887776655433


Q ss_pred             eCCCcC---cEEE-EEEccCCCCCEEEEEe------CCCeEEEEeCCCceeeEe
Q psy6984         145 EDGHSD---WVSC-VRFSPNHQNPIIVSAG------WDRMVKVWNLTNCKLKIN  188 (380)
Q Consensus       145 ~~~~~~---~v~~-~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~  188 (380)
                      ......   .+.+ ..+. +   ..++.+.      .++.|.-+|.++++....
T Consensus       147 ~~~~~~~~~~~tssP~v~-~---g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-K---GKVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             ccccccccccccCCcEEE-C---CEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            211110   1111 1111 1   1344433      268899999988776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4460|consensus

Probab=92.91  E-value=3.6  Score=37.59  Aligned_cols=90  Identities=18%  Similarity=0.144  Sum_probs=50.3

Q ss_pred             ceeEEEEeecCCEEEEeeCCCcEEEEeccc-ceeeeEeecccceEEEeeCcccccc-cCCCCCCceEEEEEecCC---CE
Q psy6984         284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVDLETKKMVEELRPDVVSQ-STKADPPMCLSLAWSTDG---QT  358 (380)
Q Consensus       284 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg---~~  358 (380)
                      +|..+..++.|..++-.|.+|.+.+.=... ++.-.+.  +++..+......+..+ ......-.+..++|+|+.   .+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~e--Dgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFE--DGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceec--CCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            466778889999988888888776542000 0000010  1111111111111110 111133456788999986   66


Q ss_pred             EEEEeeCCeEEEEEeee
Q psy6984         359 LFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       359 l~~g~~dg~v~iw~~~~  375 (380)
                      |..-++|+.+|+|+.+.
T Consensus       183 L~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEEecCcEEEEEecCC
Confidence            77778999999999864

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.82  E-value=5.3  Score=33.74  Aligned_cols=192  Identities=14%  Similarity=0.133  Sum_probs=105.1

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK   97 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   97 (380)
                      .+..+.++   .++..-+..+.-+++.|++..+....+......   ..-.++  .-.|+++..+..|--+.+.|+.+..
T Consensus        88 l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---gyaygv--~vsGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          88 LFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---GYAYGV--YVSGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCC---ceEEEE--EecCCEEEEeeccCcEEEEECCCCC
Confidence            44455554   346677777788999998765433211111111   222333  4468999999987778899987643


Q ss_pred             ---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-cEEEEEEccCCCCCEEEEEeCCC
Q psy6984          98 ---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD-WVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        98 ---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                         ...++......-..++.+  |++...+..|+-+++-|........++..-... .+.++..+++.   .+++ -.+.
T Consensus       160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr---~y~v-vy~e  233 (370)
T COG5276         160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR---AYLV-VYDE  233 (370)
T ss_pred             CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe---eEEE-Eccc
Confidence               333444334444556655  778888889999999997665444444322222 46666666542   2222 2234


Q ss_pred             eEEEEeCCCceeeEe--eeCCc--cceEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q psy6984         174 MVKVWNLTNCKLKIN--HSGHT--GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~--~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  225 (380)
                      -+.+-|..+.+....  .....  ..++.+..  .+++......+.-+.+.|+.+.
T Consensus       234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             ceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence            455666655432111  11111  12222233  3455555556666666666543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.51  E-value=0.47  Score=26.30  Aligned_cols=25  Identities=24%  Similarity=0.514  Sum_probs=17.5

Q ss_pred             eEEEEEecCCCEEEE-EeeC--CeEEEE
Q psy6984         347 CLSLAWSTDGQTLFA-GYSD--NTIRVW  371 (380)
Q Consensus       347 ~~~~~~s~dg~~l~~-g~~d--g~v~iw  371 (380)
                      -....|||||+.|+- ...+  |.-.||
T Consensus        11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen   11 DGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            346789999999875 4456  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.44  E-value=5.9  Score=33.32  Aligned_cols=188  Identities=7%  Similarity=0.114  Sum_probs=97.1

Q ss_pred             eCCCCCCeEEEee-----CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC--------------
Q psy6984          24 TNPKFPDTILSCS-----RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW--------------   84 (380)
Q Consensus        24 ~~~~~~~~l~t~~-----~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--------------   84 (380)
                      |+|+ +.+|...-     .-|.|-|||....   +. ....+..|.-.-..+.+.+||+.++.+.-              
T Consensus       121 fs~d-G~~LYATEndfd~~rGViGvYd~r~~---fq-rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN  195 (366)
T COG3490         121 FSPD-GRLLYATENDFDPNRGVIGVYDAREG---FQ-RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN  195 (366)
T ss_pred             cCCC-CcEEEeecCCCCCCCceEEEEecccc---cc-eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence            5555 45555433     3468889987521   11 12234556556678999999998886542              


Q ss_pred             ----CCcEEEEECCCCceeeee--c--ccCCCeEEEEEeCCCCEEEEEeCCCcE-----EEEeCCCcceEEEeeC-----
Q psy6984          85 ----DKTLRLWDLAAGKTTRRF--E--DHTKDVLSVAFSVDNRQIVSSSRDKTI-----KLWNTLAHCKFTIVED-----  146 (380)
Q Consensus        85 ----d~~i~vwd~~~~~~~~~~--~--~h~~~v~~~~~~~~~~~~~s~~~d~~v-----~iwd~~~~~~~~~~~~-----  146 (380)
                          .-++.+.|..+|+.+.+.  .  .+.-+|.-++..+||...+-+--.|.-     .+=-...+..+..+..     
T Consensus       196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~  275 (366)
T COG3490         196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT  275 (366)
T ss_pred             hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence                112334444455444332  2  234457777777777665543322100     0000011111111111     


Q ss_pred             -CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         147 -GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       147 -~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                       ...+.|-+++.+... ..+.+|.-..+...+||..++..+....-    ..+.-+-+...-++..+.+|.+.++.
T Consensus       276 ~~~anYigsiA~n~~~-glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         276 AAFANYIGSIAANRRD-GLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HHHHhhhhheeecccC-CeEEEecCCCCeEEEEEcCCCcEEecccc----cccccceeccCceEEecCCceEEecc
Confidence             112346677776432 33445555566778999999887643321    11112233445566777788887763

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.40  E-value=1.4  Score=35.95  Aligned_cols=66  Identities=20%  Similarity=0.297  Sum_probs=47.5

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCceeeee-------c-------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          70 IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-------E-------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        70 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------~-------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      +.+..++++|++-..+|.+++||+.+++....-       .       .....|..+.++.+|.-+++-+. |....|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence            335567899999999999999999987654321       1       23456788888888877766544 66777774


Q ss_pred             C
Q psy6984         136 L  136 (380)
Q Consensus       136 ~  136 (380)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            3

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4441|consensus

Probab=91.98  E-value=12  Score=35.79  Aligned_cols=147  Identities=14%  Similarity=0.142  Sum_probs=73.0

Q ss_pred             cCCCEEEEEeCCC------cEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCC-C-----cEEEEeCCCcce
Q psy6984          74 SDGNYALSGSWDK------TLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRD-K-----TIKLWNTLAHCK  140 (380)
Q Consensus        74 ~~~~~l~s~~~d~------~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d-~-----~v~iwd~~~~~~  140 (380)
                      ..+..++.||.++      .+..||..+++-..... .+...-.+++.. ++...++|+.| |     .+-.||.....-
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            3456677777773      67788887763322211 122223344443 46777888888 2     455666544331


Q ss_pred             EEEeeCCCcC-cEEEEEEccCCCCCEEEEEeCCCe-----EEEEeCCCceeeEeeeCCccceEEE-EEcCCCCEEEEEcC
Q psy6984         141 FTIVEDGHSD-WVSCVRFSPNHQNPIIVSAGWDRM-----VKVWNLTNCKLKINHSGHTGYLNTV-TVSPDGSLCASGGK  213 (380)
Q Consensus       141 ~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d~~-----v~iwd~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~  213 (380)
                      .. ...-... .-..++..   .+.+.+.||.||.     +..||..+.+-....+... ..... ...-+|++.++||.
T Consensus       362 ~~-~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~  436 (571)
T KOG4441|consen  362 TP-VAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGG  436 (571)
T ss_pred             ec-cCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCc
Confidence            11 1100000 00111111   2336677888864     6677776644322111111 11111 12336788888886


Q ss_pred             CC------cEEEEECCCCc
Q psy6984         214 DM------NAMLWDLNDGK  226 (380)
Q Consensus       214 d~------~i~i~d~~~~~  226 (380)
                      ++      .+..||..+.+
T Consensus       437 ~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCCccccceEEEEcCCCCc
Confidence            54      45667776654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.85  E-value=9.4  Score=34.41  Aligned_cols=197  Identities=12%  Similarity=0.122  Sum_probs=92.2

Q ss_pred             CCeEEEe-eCCCeEEEeecCCCCCCcccccccc-----cCCC--cceEEEEEccCCCEEEEE--eCC----CcEEEEECC
Q psy6984          29 PDTILSC-SRDNTLIIWKLTRDDTNYGVPQKRL-----KGHS--HFISDIVLSSDGNYALSG--SWD----KTLRLWDLA   94 (380)
Q Consensus        29 ~~~l~t~-~~dg~v~vw~~~~~~~~~~~~~~~~-----~~h~--~~v~~~~~~~~~~~l~s~--~~d----~~i~vwd~~   94 (380)
                      .++|+.. -..+.|.|.|+..+...-.+ .+.+     ....  ..-..+-.-|+|+.++++  ..+    |.+.++|-+
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l-~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRL-HKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EE-EEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCce-EeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            3455554 47789999998754322211 1111     1000  111223334788888875  333    468889988


Q ss_pred             CCceeeeecccCC---CeEEEEEeCCCCEEEEEeC--------------------CCcEEEEeCCCcceEEEeeCCCcCc
Q psy6984          95 AGKTTRRFEDHTK---DVLSVAFSVDNRQIVSSSR--------------------DKTIKLWNTLAHCKFTIVEDGHSDW  151 (380)
Q Consensus        95 ~~~~~~~~~~h~~---~v~~~~~~~~~~~~~s~~~--------------------d~~v~iwd~~~~~~~~~~~~~~~~~  151 (380)
                      +.+....++...+   --.++.+.|..+.++|...                    ..++.+||..+++..+.+.-+....
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            7777776654332   2346777888888888753                    3689999998887777776654432


Q ss_pred             -EEEEEEccCCCCCE-EEEEeCCCeEEEEeC-CCce----eeEeeeCC-----------------ccceEEEEEcCCCCE
Q psy6984         152 -VSCVRFSPNHQNPI-IVSAGWDRMVKVWNL-TNCK----LKINHSGH-----------------TGYLNTVTVSPDGSL  207 (380)
Q Consensus       152 -v~~~~~~~~~~~~~-l~s~~~d~~v~iwd~-~~~~----~~~~~~~~-----------------~~~i~~~~~~~~~~~  207 (380)
                       .--++|..+..... ++.+....+|..|-- .+++    .+......                 ..-|+.+.+|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence             34678876654433 333334445544432 2221    12222110                 234788899999998


Q ss_pred             EEE-EcCCCcEEEEECCCCc
Q psy6984         208 CAS-GGKDMNAMLWDLNDGK  226 (380)
Q Consensus       208 l~~-~~~d~~i~i~d~~~~~  226 (380)
                      |.. .=.+|.++-||+....
T Consensus       326 LYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTT
T ss_pred             EEEEcccCCcEEEEecCCCC
Confidence            755 5578999999997654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.64  E-value=7.5  Score=32.87  Aligned_cols=166  Identities=16%  Similarity=0.199  Sum_probs=98.1

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +.|-+..|.++.|+|+ .+.|++..+...-.||=-...+....+|   +.+-. ....+.+..++++.++-=.+..+.+.
T Consensus        81 i~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiP---L~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          81 ILGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIP---LTGFS-DPETIEYIGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             cccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEec---ccccC-ChhHeEEecCCEEEEEehhcceEEEE
Confidence            4455566999999998 5667766666666666322223223333   23322 23567777788888877788888888


Q ss_pred             ECCCCceeee-------ec--cc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE--EEeeCCC-------cCcE
Q psy6984          92 DLAAGKTTRR-------FE--DH-TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF--TIVEDGH-------SDWV  152 (380)
Q Consensus        92 d~~~~~~~~~-------~~--~h-~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~-------~~~v  152 (380)
                      .+..+.....       +.  .+ +...-.++|+|....+..+-.-+-+.||........  ......+       -..+
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            7765522211       11  12 445778999999988888887777888764322110  0000011       1236


Q ss_pred             EEEEEccCCCCCEEEEEeCCCeEEEEeCCCc
Q psy6984         153 SCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC  183 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  183 (380)
                      .++.|++... .+++-+..++.+.-.|....
T Consensus       236 Sgl~~~~~~~-~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         236 SGLEFNAITN-SLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ccceecCCCC-cEEEEecCCceEEEEecCCC
Confidence            6778877543 35555555666666666543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.64  E-value=7.5  Score=32.87  Aligned_cols=119  Identities=8%  Similarity=0.084  Sum_probs=71.5

Q ss_pred             cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC
Q psy6984         103 EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       103 ~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~  182 (380)
                      .+....+.++.|+|+.+.|++......-.++=...+..+..+...--.....+.+..++  .+.++--.++.+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n--~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN--QFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC--EEEEEehhcceEEEEEEcC
Confidence            34455599999999999999888877777774444433332221111112345554433  2455555566776665543


Q ss_pred             ce---------eeEeeeCC-ccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         183 CK---------LKINHSGH-TGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       183 ~~---------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      ..         .......+ +.....++++|..+.|..+-....+.||.+.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            31         11111122 4556789999988888888777777777654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.53  E-value=1.3  Score=25.22  Aligned_cols=31  Identities=16%  Similarity=0.155  Sum_probs=25.5

Q ss_pred             ceEEEEEcCCC---CEEEEEcCCCcEEEEECCCC
Q psy6984         195 YLNTVTVSPDG---SLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       195 ~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~  225 (380)
                      .+.++.|+|..   .+|+.+-.-+.+.++|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            57889999854   48888888899999999853

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.42  E-value=11  Score=34.23  Aligned_cols=147  Identities=7%  Similarity=0.124  Sum_probs=86.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCcee--ee-e-cccCCCeEEEEEeC----CCCEEEEEeCCCcEEEEeCCC---------
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTT--RR-F-EDHTKDVLSVAFSV----DNRQIVSSSRDKTIKLWNTLA---------  137 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~--~~-~-~~h~~~v~~~~~~~----~~~~~~s~~~d~~v~iwd~~~---------  137 (380)
                      +...+++|+..|.++||+...+...  .. + ..-..+|..+..-.    .....++.-.-+.+.+|.+..         
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            4468999999999999998654311  11 1 12346787777532    122233334556677776521         


Q ss_pred             cceEEEeeC-CCcCcEEEEEEccCC--C-CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         138 HCKFTIVED-GHSDWVSCVRFSPNH--Q-NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       138 ~~~~~~~~~-~~~~~v~~~~~~~~~--~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      ...+....+ .-......+++-|-+  . ..++..-+.||.+.+++-+........++ .--...+.+.+.-..|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence            112222211 111122233332222  1 45788889999999999877554444443 223445778888889999999


Q ss_pred             CCcEEEEEC
Q psy6984         214 DMNAMLWDL  222 (380)
Q Consensus       214 d~~i~i~d~  222 (380)
                      +..+.-|..
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            888888864

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.10  E-value=12  Score=33.99  Aligned_cols=92  Identities=17%  Similarity=0.258  Sum_probs=56.3

Q ss_pred             EEeCCCCCCeEEEeeCCCeEEE---eecCCCC---CCcccccccccCCC--cceEEEEEc-----------cCCCEEEEE
Q psy6984          22 IATNPKFPDTILSCSRDNTLII---WKLTRDD---TNYGVPQKRLKGHS--HFISDIVLS-----------SDGNYALSG   82 (380)
Q Consensus        22 i~~~~~~~~~l~t~~~dg~v~v---w~~~~~~---~~~~~~~~~~~~h~--~~v~~~~~~-----------~~~~~l~s~   82 (380)
                      ++.+|+ ++.|+-+..+..+.+   |+.....   ..+.+.......+.  ..|+++.+-           +|...++.|
T Consensus         7 isls~~-~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    7 ISLSPD-GDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             EEecCC-CCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            456666 678888877666655   6432211   11222111111222  456665532           456789999


Q ss_pred             eCCCcEEEEECCCCceeeeecccCCCeEEEEEe
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS  115 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  115 (380)
                      ..+|.|++|.- +|..+..-.-|..+|..+.+.
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence            99999999985 566666556688888888874

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=90.76  E-value=9.4  Score=32.38  Aligned_cols=144  Identities=19%  Similarity=0.127  Sum_probs=80.1

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee-------
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR-------  101 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-------  101 (380)
                      ++.|+.|..+| +.+++........     . ..+...|..+...++-+.|++-+ |+.++++++..-.....       
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~-----~-i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPT-----R-ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccce-----e-EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            56888888888 8888872211111     1 11223389999988877766654 59999999865332221       


Q ss_pred             -------ecccCCCeEEEE--EeCCCCEEEEEeCCCcEEEEeCCCc-ce--EEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984         102 -------FEDHTKDVLSVA--FSVDNRQIVSSSRDKTIKLWNTLAH-CK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus       102 -------~~~h~~~v~~~~--~~~~~~~~~s~~~d~~v~iwd~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                             .......+...+  -...+...+.....+.+.+|..... ..  ....+-.-.+.+.++.|..+    .++.|
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~----~i~v~  154 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGN----KICVG  154 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCC----EEEEE
Confidence                   011122333333  1234444455555568888875432 11  11222223456788888743    35555


Q ss_pred             eCCCeEEEEeCCCcee
Q psy6984         170 GWDRMVKVWNLTNCKL  185 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~  185 (380)
                      . .+...+.|+.+...
T Consensus       155 ~-~~~f~~idl~~~~~  169 (275)
T PF00780_consen  155 T-SKGFYLIDLNTGSP  169 (275)
T ss_pred             e-CCceEEEecCCCCc
Confidence            4 44567788875543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.36  E-value=20  Score=35.53  Aligned_cols=154  Identities=14%  Similarity=0.134  Sum_probs=86.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeE-------------EEEEeC--CCCEEEEEeC----------CCc
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL-------------SVAFSV--DNRQIVSSSR----------DKT  129 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~--~~~~~~s~~~----------d~~  129 (380)
                      .+.+++.++.|+.+.-.|..+|+....+.. .+.|.             .+.-.|  .+..++.|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            345888999999999999999998876532 11110             011112  1335555542          578


Q ss_pred             EEEEeCCCcceEEEeeCCCc--------C--------cE-EEEEEccCCCCCEEEEE------------------eCCCe
Q psy6984         130 IKLWNTLAHCKFTIVEDGHS--------D--------WV-SCVRFSPNHQNPIIVSA------------------GWDRM  174 (380)
Q Consensus       130 v~iwd~~~~~~~~~~~~~~~--------~--------~v-~~~~~~~~~~~~~l~s~------------------~~d~~  174 (380)
                      |+-+|..+++.......+..        .        .+ ...++.+...  +++.+                  -..+.
T Consensus       338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g--lvy~ptGn~~pd~~g~~r~~~~n~y~~s  415 (764)
T TIGR03074       338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG--LVYLPMGNQTPDQWGGDRTPADEKYSSS  415 (764)
T ss_pred             EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC--eEEEeCCCccccccCCccccCcccccce
Confidence            99999877766544332110        0        00 0122222211  11111                  12345


Q ss_pred             EEEEeCCCceeeEeeeC-Cc--------cceEEEEEcC-CCC---EEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         175 VKVWNLTNCKLKINHSG-HT--------GYLNTVTVSP-DGS---LCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~-~~--------~~i~~~~~~~-~~~---~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      |.-.|.++++....++. |.        ....=+.+.. +|+   .++.+.++|.+++.|.++|+.+...
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            66667777777655543 21        1111122322 563   7899999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.23  E-value=1.9  Score=24.05  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=25.8

Q ss_pred             CCCCEEEE-EcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         203 PDGSLCAS-GGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       203 ~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      |+++.+.+ ...++.|.++|..+++.+..+........++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~   40 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA   40 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence            56665554 4467899999998887777665444344443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.06  E-value=5  Score=36.58  Aligned_cols=60  Identities=12%  Similarity=0.311  Sum_probs=47.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      .+.|+|.||..|.|++||...-+....+++...+|..+..+.+|.++++.+.. .+.+-|+
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~  631 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV  631 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence            45699999999999999976655555567777889999999999998877664 4555554

>PHA03098 kelch-like protein; Provisional

Probab=90.04  E-value=12  Score=35.53  Aligned_cols=62  Identities=15%  Similarity=0.196  Sum_probs=32.2

Q ss_pred             cCCCEEEEEeCCC------cEEEEECCCCceeeeecccC--CCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCC
Q psy6984          74 SDGNYALSGSWDK------TLRLWDLAAGKTTRRFEDHT--KDVLSVAFSVDNRQIVSSSRDK-----TIKLWNTLA  137 (380)
Q Consensus        74 ~~~~~l~s~~~d~------~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~s~~~d~-----~v~iwd~~~  137 (380)
                      .++..++.||.++      .+..||..+++-.. +..-.  ..-.+++ ..++...+.|+.++     .+..||..+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCC
Confidence            3556677777543      57788887654422 21111  1111122 23566777777652     456677544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.64  E-value=21  Score=34.69  Aligned_cols=114  Identities=14%  Similarity=0.121  Sum_probs=71.9

Q ss_pred             eEEEEEcc--CCCEEEEEeCCCcEEEEECCC-------C----ce---e----eee-cccCCCeEEEEEe--CCCCEEEE
Q psy6984          67 ISDIVLSS--DGNYALSGSWDKTLRLWDLAA-------G----KT---T----RRF-EDHTKDVLSVAFS--VDNRQIVS  123 (380)
Q Consensus        67 v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~-------~----~~---~----~~~-~~h~~~v~~~~~~--~~~~~~~s  123 (380)
                      |+-+.+..  +...|+.+..||.|.+|-.++       .    +.   .    -.+ ......+.+++++  ...+++|+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            55555432  456889999999999997521       0    00   0    001 1123467888988  77788888


Q ss_pred             EeCCCcEEEEeCCC--cceEEEeeCCCcCcEEEEEEccCCC--C--CEEEEEeCCCeEEEEeC
Q psy6984         124 SSRDKTIKLWNTLA--HCKFTIVEDGHSDWVSCVRFSPNHQ--N--PIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       124 ~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~--~--~~l~s~~~d~~v~iwd~  180 (380)
                      ++....|.+|-...  ..........+...|.+|.|.++..  .  ..+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888875322  1111111123455699999988652  2  25677888999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.26  E-value=7.5  Score=35.16  Aligned_cols=36  Identities=14%  Similarity=0.113  Sum_probs=29.1

Q ss_pred             ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc
Q psy6984         104 DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus       104 ~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      .....+.++..+|++++.|+...-|.|.++|+....
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence            445568889999999988888888999999976543

>PRK13684 Ycf48-like protein; Provisional

Probab=89.26  E-value=15  Score=32.40  Aligned_cols=152  Identities=10%  Similarity=0.046  Sum_probs=0.0

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      ...+.++.+.+++.+++++......+.++-....-...-..-...+.++.+.++++.++.+.. |.+++=....+.....
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDLESWSK  250 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCCCcccc


Q ss_pred             eeCC---CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccc---eEEEEEcCCCCEEEEEcCCCcE
Q psy6984         144 VEDG---HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGY---LNTVTVSPDGSLCASGGKDMNA  217 (380)
Q Consensus       144 ~~~~---~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~d~~i  217 (380)
                      ....   ....+..+.+.+++.   ++.++.+|.+. .....++--.........   ...+.+..+++.+++| ..|.|
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~---~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~i  325 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGE---IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVL  325 (334)
T ss_pred             ccCCccccccceeeEEEcCCCC---EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceE


Q ss_pred             EEEE
Q psy6984         218 MLWD  221 (380)
Q Consensus       218 ~i~d  221 (380)
                      ..++
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.22  E-value=2.5  Score=23.55  Aligned_cols=31  Identities=19%  Similarity=0.167  Sum_probs=23.0

Q ss_pred             cCCCEEEEEe-CCCcEEEEECCCCceeeeecc
Q psy6984          74 SDGNYALSGS-WDKTLRLWDLAAGKTTRRFED  104 (380)
Q Consensus        74 ~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~  104 (380)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666655 478999999988877776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.89  E-value=11  Score=36.60  Aligned_cols=118  Identities=10%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             ceEEEEeCCC-CCCeEEEeeCCCeEEEeecCC-------C--CCC--c---ccccccccCCCcceEEEEEc--cCCCEEE
Q psy6984          18 WVTQIATNPK-FPDTILSCSRDNTLIIWKLTR-------D--DTN--Y---GVPQKRLKGHSHFISDIVLS--SDGNYAL   80 (380)
Q Consensus        18 ~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~-------~--~~~--~---~~~~~~~~~h~~~v~~~~~~--~~~~~l~   80 (380)
                      .|+.|...-- ..+.|+.|.+||.|.+|..+.       .  +..  .   .+.+.-...-...++.++++  ...++||
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            4666653321 246899999999999997631       0  000  0   00010011123367889998  7788888


Q ss_pred             EEeCCCcEEEEECCCC--ceee-eecccCCCeEEEEEeCCC---C---EEEEEeCCCcEEEEeC
Q psy6984          81 SGSWDKTLRLWDLAAG--KTTR-RFEDHTKDVLSVAFSVDN---R---QIVSSSRDKTIKLWNT  135 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~--~~~~-~~~~h~~~v~~~~~~~~~---~---~~~s~~~d~~v~iwd~  135 (380)
                      +++....|.|+-....  +... .-..|...|-+|+|-++.   .   .+++++-.|.+.+|+.
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888887765432  1111 111355668889996643   2   6778899998888775

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.67  E-value=16  Score=32.11  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCce---eeee----cccCCCeEEEEEeCC
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT---TRRF----EDHTKDVLSVAFSVD  117 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~----~~h~~~v~~~~~~~~  117 (380)
                      .+.++|.|||+.+++ ...|.|++++ .++..   +..+    .........++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            468999999877665 5699999999 44433   2122    123345789999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.47  E-value=12  Score=30.24  Aligned_cols=102  Identities=14%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             CEEEEEeCCCcEEEEECCC--CceeeeecccCCCeEEEEEeCCCCEEEEEeCC---C---cEEEEe---CC---------
Q psy6984          77 NYALSGSWDKTLRLWDLAA--GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---K---TIKLWN---TL---------  136 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~---~v~iwd---~~---------  136 (380)
                      +.|+.+...+.|.+|++..  .+....+.. -+.|..+..+..|++++|--.+   .   .+|+|-   ..         
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4555556667899999983  344455543 3788999999999999875332   2   566652   11         


Q ss_pred             ---C-----------cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC
Q psy6984         137 ---A-----------HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       137 ---~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~  182 (380)
                         +           ......++..-...+.|++.+|...+  |+.|+ ++.+.+|.+..
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~--LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN--LLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC--EEEEc-CCEEEEEEEEE
Confidence               0           01122333334456778888886543  44444 56888998754

>KOG2247|consensus

Probab=88.35  E-value=0.61  Score=41.89  Aligned_cols=108  Identities=10%  Similarity=0.177  Sum_probs=75.1

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      +....++|..+.+..++.+-..+.+.+|++.++..   .....-..|....  +.|++....++.+-..|++.|++..+.
T Consensus        75 g~aldm~wDkegdvlavlAek~~piylwd~n~eyt---qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgts  149 (615)
T KOG2247|consen   75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTS  149 (615)
T ss_pred             hhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---HHHhccCcchHHH--HhhccCCccccccccccceEEEeccch
Confidence            34455677765455566677888999999875421   1111112233332  678888888999989999999999887


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI  130 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v  130 (380)
                      +.......|...++++++.+.+. .+.++.|..+
T Consensus       150 R~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L  182 (615)
T KOG2247|consen  150 RRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL  182 (615)
T ss_pred             hhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence            77777766999999999998764 4455555544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=88.27  E-value=17  Score=31.94  Aligned_cols=108  Identities=14%  Similarity=0.127  Sum_probs=54.5

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC-CCcccccccccCCCcceEEEEEccC---CCEEEEEeC-C--------
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDD-TNYGVPQKRLKGHSHFISDIVLSSD---GNYALSGSW-D--------   85 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~-d--------   85 (380)
                      -+.|++.|+ +.+|+ +...|.|++.+..... ...................++++|+   ..+|..... .        
T Consensus         4 P~~~a~~pd-G~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPD-GRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETT-SCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCC-CcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            467899998 55555 5669999999832211 0000011223444567889999984   334443332 1        


Q ss_pred             CcEEEEECCCC--c-----e-eeeecc---cCCCeEEEEEeCCCCEEEEEeCCC
Q psy6984          86 KTLRLWDLAAG--K-----T-TRRFED---HTKDVLSVAFSVDNRQIVSSSRDK  128 (380)
Q Consensus        86 ~~i~vwd~~~~--~-----~-~~~~~~---h~~~v~~~~~~~~~~~~~s~~~d~  128 (380)
                      ..|.-|.+..+  .     . +..+..   ....-..++|.|||.+.++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            23444444333  1     1 111111   122345699999997666655544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.03  E-value=5.7  Score=32.47  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccc-cccc-cc-------CCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGV-PQKR-LK-------GHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~-~~~~-~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      .+..+...   +++++.-..+|.+++||+......... .... +.       .....|..+.++.+|.-+++-+ +|..
T Consensus        14 ~~~~l~~~---~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~   89 (219)
T PF07569_consen   14 PVSFLECN---GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS   89 (219)
T ss_pred             ceEEEEeC---CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence            44445544   457888888999999999865433221 1111 11       3456688888888887766654 5788


Q ss_pred             EEEECC
Q psy6984          89 RLWDLA   94 (380)
Q Consensus        89 ~vwd~~   94 (380)
                      +.|+..
T Consensus        90 y~y~~~   95 (219)
T PF07569_consen   90 YSYSPD   95 (219)
T ss_pred             EEeccc
Confidence            888864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.99  E-value=30  Score=34.37  Aligned_cols=113  Identities=14%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccCCC--------eEEEEEe----------------CCCCEEEEEeCCCcEE
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD--------VLSVAFS----------------VDNRQIVSSSRDKTIK  131 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~----------------~~~~~~~s~~~d~~v~  131 (380)
                      +..|+.++.++.|.-.|..+|+.+.++......        .+.+++.                .++..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888999999999999988776432211        1223321                1344788888899888


Q ss_pred             EEeCCCcceEEEeeCCCcCcEE-------------EEEEccCCCCCEEEEEeC----------CCeEEEEeCCCceeeEe
Q psy6984         132 LWNTLAHCKFTIVEDGHSDWVS-------------CVRFSPNHQNPIIVSAGW----------DRMVKVWNLTNCKLKIN  188 (380)
Q Consensus       132 iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~  188 (380)
                      -.|..+++.......  ...+.             .+.-.|-=-+..++.|+.          +|.|+-+|.+++++...
T Consensus       274 ALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            888776655432211  00000             000001000124555532          68899999999988765


Q ss_pred             ee
Q psy6984         189 HS  190 (380)
Q Consensus       189 ~~  190 (380)
                      ..
T Consensus       352 ~~  353 (764)
T TIGR03074       352 WD  353 (764)
T ss_pred             Ee
Confidence            43

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.87  E-value=4  Score=36.59  Aligned_cols=157  Identities=14%  Similarity=0.120  Sum_probs=87.0

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee-ee-cccCCC----eE-EEEEeCCCCEEEEEeCCCcEEEE-eCCC
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR-RF-EDHTKD----VL-SVAFSVDNRQIVSSSRDKTIKLW-NTLA  137 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~-~~h~~~----v~-~~~~~~~~~~~~s~~~d~~v~iw-d~~~  137 (380)
                      .|..+-..|||+.|..-+. ..+.++++.+..... ++ ....+.    |+ .+..-..|..++.++.||.|.-| |.+.
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~  300 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR  300 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence            3556778899998776654 578888886543221 11 111121    21 11222345678888999988777 4333


Q ss_pred             cce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC
Q psy6984         138 HCK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM  215 (380)
Q Consensus       138 ~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  215 (380)
                      ...  +..+..-.-.....-...|+.+...+++-..+|++..+.....+....... -..+.-+++||++.++++- ..|
T Consensus       301 ~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e-~~g  378 (733)
T COG4590         301 DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSE-DQG  378 (733)
T ss_pred             CCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCcccchheee-cCC
Confidence            211  111111001111111223444555677778888888776655444332222 2245668899999998765 446


Q ss_pred             cEEEEECCCC
Q psy6984         216 NAMLWDLNDG  225 (380)
Q Consensus       216 ~i~i~d~~~~  225 (380)
                      .++++.+++.
T Consensus       379 ki~~~~l~Nr  388 (733)
T COG4590         379 KIRLAQLENR  388 (733)
T ss_pred             ceEEEEecCC
Confidence            7888877654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=87.29  E-value=21  Score=31.90  Aligned_cols=101  Identities=17%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             CCeEEEEEeCCCCEEEEEe-----------CCC-cEEEEeCCC--cc--eEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984         107 KDVLSVAFSVDNRQIVSSS-----------RDK-TIKLWNTLA--HC--KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~-----------~d~-~v~iwd~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      .....++|.++|+.+++..           ..+ .|.+++...  +.  +...+..+ ......+++.+++   ++++ .
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G---lyV~-~   88 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG---VYVA-T   88 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC---EEEe-C
Confidence            3456788888888776643           222 666665321  11  11222222 2234667777653   4443 3


Q ss_pred             CCCeEEEEeCCCc-----ee--eE-eeeC----CccceEEEEEcCCCCEEEEEc
Q psy6984         171 WDRMVKVWNLTNC-----KL--KI-NHSG----HTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       171 ~d~~v~iwd~~~~-----~~--~~-~~~~----~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      .....++.|....     +.  .. .+..    +....+.+.+.|||.+.++-+
T Consensus        89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3433334454321     11  11 1211    123477899999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=87.11  E-value=18  Score=33.90  Aligned_cols=121  Identities=9%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             cccceEEEEeCCCC---CCeEEEeeCCCeEEEeecCCCCCCcc--cccccc-cCCCcc--eEEEEEccCCCEEEEEeCCC
Q psy6984          15 HNGWVTQIATNPKF---PDTILSCSRDNTLIIWKLTRDDTNYG--VPQKRL-KGHSHF--ISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus        15 h~~~v~~i~~~~~~---~~~l~t~~~dg~v~vw~~~~~~~~~~--~~~~~~-~~h~~~--v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ...-|..+.|.|..   ...+++......|.||.+-.......  +..... .+...+  -..+.|+|....|+.=....
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            34568889998852   12455566678999999753211110  000000 000111  12577999888776544433


Q ss_pred             cEEEEECCCCceeeee-cccCCCeEEEEEeCCCCEEEEEeCC-CcEEEEeC
Q psy6984          87 TLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVDNRQIVSSSRD-KTIKLWNT  135 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d-~~v~iwd~  135 (380)
                      .=.++++.......+. ....+-|.|.+|.+||++++.+-.. =.-.+||-
T Consensus       135 vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            3335555433222222 2345779999999999988765443 34578884

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.05  E-value=17  Score=30.51  Aligned_cols=128  Identities=10%  Similarity=-0.015  Sum_probs=72.6

Q ss_pred             eeeeecccCCC-eEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          98 TTRRFEDHTKD-VLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        98 ~~~~~~~h~~~-v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      .++++...... -..+.|..++.++-+.+.-|  .|+.+|+.++.......-...-.-..+....+   .++.-.=.++.
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~~~  111 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSSSE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC---EEEEEEecCCe
Confidence            34444322233 34677877888877877666  78888887766554433333323344444432   12223344678


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      ..+||..+.+....+.- .+.-+.++  .++..|+.......++++|..+.+....+
T Consensus       112 ~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             EEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence            88999988776655542 34456666  45666666666779999998877665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630|consensus

Probab=86.62  E-value=2.1  Score=42.81  Aligned_cols=101  Identities=15%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      .-..++.|+|..+...+.+..|+.|+|..+.......    . ...-...+++++|+|-|++++.|-..|.+.-|...-.
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v----~-s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le  230 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV----T-SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE  230 (1405)
T ss_pred             cccccccccCCccchhhhhccccchhhhhhhhhhhhh----c-ccCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence            3455778999877788889999999998765321111    0 1123456899999999999999999999998876432


Q ss_pred             ceeeeec---c-cCCCeEEEEEeCCCCEEEE
Q psy6984          97 KTTRRFE---D-HTKDVLSVAFSVDNRQIVS  123 (380)
Q Consensus        97 ~~~~~~~---~-h~~~v~~~~~~~~~~~~~s  123 (380)
                       ....+.   . ....|.++.|-..-.+++.
T Consensus       231 -ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  231 -IKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             -eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence             222221   1 1356899999766555543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.62  E-value=18  Score=30.37  Aligned_cols=158  Identities=13%  Similarity=0.064  Sum_probs=93.3

Q ss_pred             ceEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeeeecccCCCeE--EEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984          66 FISDIVLSSDGNYALSGSWDK--TLRLWDLAAGKTTRRFEDHTKDVL--SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~  141 (380)
                      +-..+.|..+|.++-+.+.-|  .|+.+|+.+++..+...-. ....  .++.. +++...-.-.++...+||..+-...
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence            445688877888888888776  7999999999877654321 1221  23333 2334445567888999997654433


Q ss_pred             EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--C---ccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--H---TGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      ....-..+.  +.++.  +++  .|+.......+..+|..+.+......-  .   ...++.+.+- +|...|--=....
T Consensus       124 ~~~~y~~EG--WGLt~--dg~--~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  124 GTFPYPGEG--WGLTS--DGK--RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEE-SSS----EEEE--CSS--CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEecCCcc--eEEEc--CCC--EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence            333222233  45553  333  244444456899999887654433321  1   2356777775 6777777778888


Q ss_pred             EEEEECCCCcEEEEEE
Q psy6984         217 AMLWDLNDGKHLHTLV  232 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~  232 (380)
                      |...|..+|+....+.
T Consensus       197 I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  197 IVRIDPETGKVVGWID  212 (264)
T ss_dssp             EEEEETTT-BEEEEEE
T ss_pred             EEEEeCCCCeEEEEEE
Confidence            9999999998776553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4460|consensus

Probab=86.51  E-value=9.6  Score=35.00  Aligned_cols=27  Identities=11%  Similarity=0.042  Sum_probs=21.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      ..|..+..++.|..++-.|.+|.+.++
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEE
Confidence            347788899999999999999866554

>PHA02790 Kelch-like protein; Provisional

Probab=86.47  E-value=28  Score=32.49  Aligned_cols=63  Identities=11%  Similarity=0.100  Sum_probs=32.5

Q ss_pred             cCCCEEEEEeCC--CcEEEEECCCCceeeeecccCCCeEE-EEEeCCCCEEEEEeCCC---cEEEEeCCC
Q psy6984          74 SDGNYALSGSWD--KTLRLWDLAAGKTTRRFEDHTKDVLS-VAFSVDNRQIVSSSRDK---TIKLWNTLA  137 (380)
Q Consensus        74 ~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~s~~~d~---~v~iwd~~~  137 (380)
                      -++...+.||.+  ..+..||..+++-.. ...-..+... ....-+|...+.|+.++   .+..||..+
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC
Confidence            467777788764  357788876543221 1111111111 11223577777777553   466777544

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.43  E-value=25  Score=31.82  Aligned_cols=145  Identities=14%  Similarity=0.146  Sum_probs=74.7

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEE-EEECCCCcee-eee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc----
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLR-LWDLAAGKTT-RRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC----  139 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~-vwd~~~~~~~-~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~----  139 (380)
                      ...+..++|+.+++.+.. |.+. -||  .++.. ... ......+..+.+.+++..++++ .+|.+. +......    
T Consensus       241 f~~v~~~~dG~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccc
Confidence            344566788876666654 4433 343  23221 111 2234568899999998887766 445443 2222221    


Q ss_pred             -eEEEeeCC-CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEEcCCC
Q psy6984         140 -KFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASGGKDM  215 (380)
Q Consensus       140 -~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~  215 (380)
                       .+...... ....+..+.+.+++.   ++.++..|.+....-....-....  ..-......+.|.++++.+++| .+|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~---~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G  391 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKE---AWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG  391 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCc---EEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence             11211111 112367788876543   555666777665532211111111  1223467788888877777665 556


Q ss_pred             cEEEE
Q psy6984         216 NAMLW  220 (380)
Q Consensus       216 ~i~i~  220 (380)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            65544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.38  E-value=5  Score=38.12  Aligned_cols=74  Identities=23%  Similarity=0.377  Sum_probs=43.5

Q ss_pred             CCeEEEeeCCCeEEEeecCCCC---CCcccc----------ccccc--------CCCcceEEEEEcc----CCCEEEEEe
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDD---TNYGVP----------QKRLK--------GHSHFISDIVLSS----DGNYALSGS   83 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~---~~~~~~----------~~~~~--------~h~~~v~~~~~~~----~~~~l~s~~   83 (380)
                      +..++.+..||.+...+.....   ......          ...+.        .-...+..+.++.    +..+|++-+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            4578888889998888766411   111000          00000        0112345556665    778999999


Q ss_pred             CCCcEEEEECCCCceeeee
Q psy6984          84 WDKTLRLWDLAAGKTTRRF  102 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~  102 (380)
                      .|+.+++||+.+++++...
T Consensus       238 ~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TTSEEEEEETTTTCEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEe
Confidence            9999999999999886654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.16  E-value=17  Score=30.22  Aligned_cols=139  Identities=16%  Similarity=0.294  Sum_probs=70.8

Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-C--CcEEEEeCCC---cceEEEe--eCCCcCcEEEEEEccC
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-D--KTIKLWNTLA---HCKFTIV--EDGHSDWVSCVRFSPN  160 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d--~~v~iwd~~~---~~~~~~~--~~~~~~~v~~~~~~~~  160 (380)
                      .+||+.+++...--....--+.+-.+-+||+.+.+|+. +  ..+++++...   .+.....  ......|-..+..-|+
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            47898887554321111111222346789999988874 2  4577877543   1111110  0123345555666676


Q ss_pred             CCCCEEEEEeCC-CeEEEEeCCCc---eeeEeeeCC------ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Q psy6984         161 HQNPIIVSAGWD-RMVKVWNLTNC---KLKINHSGH------TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT  230 (380)
Q Consensus       161 ~~~~~l~s~~~d-~~v~iwd~~~~---~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  230 (380)
                      ++  +|+.|+.+ .+..+|.-+..   .....+...      ..----+-+.|+|++|+.+..+.  .|||..+.+.++.
T Consensus       129 G~--vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~  204 (243)
T PF07250_consen  129 GR--VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT  204 (243)
T ss_pred             CC--EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence            54  56665554 34455554221   111111100      01111245679999999888764  4668777665444


Q ss_pred             E
Q psy6984         231 L  231 (380)
Q Consensus       231 ~  231 (380)
                      +
T Consensus       205 l  205 (243)
T PF07250_consen  205 L  205 (243)
T ss_pred             C
Confidence            3

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2280|consensus

Probab=86.14  E-value=34  Score=33.13  Aligned_cols=51  Identities=16%  Similarity=0.436  Sum_probs=37.3

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      -.|+||+.. |+.+.+.....+++..+.|+.+. .|+.-..+|++.+|+....
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchh
Confidence            458888864 56666655545588899998655 5667789999999997553

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.93  E-value=23  Score=30.18  Aligned_cols=96  Identities=10%  Similarity=0.147  Sum_probs=56.1

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe------CCCcEEEEeCCCcceEEEeeC----CCcCcEEEE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS------RDKTIKLWNTLAHCKFTIVED----GHSDWVSCV  155 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~------~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~  155 (380)
                      ..|++||..+.+-...-..-.+.|.++.|..+.+.++.|.      ....+..||.....- .....    .-..+|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4699999877654444444567899999986666666664      345677888655432 12221    123567777


Q ss_pred             EEccCCCCCEEEEEe-C--CCeEEEEeCCC
Q psy6984         156 RFSPNHQNPIIVSAG-W--DRMVKVWNLTN  182 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~-~--d~~v~iwd~~~  182 (380)
                      .+.......+.+.|. .  +..|..||-.+
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            665444333454433 2  33466666544

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.53  E-value=30  Score=34.51  Aligned_cols=114  Identities=11%  Similarity=0.215  Sum_probs=70.7

Q ss_pred             ceEEEEEcc-CCCEEEEEeCCCcEEEEECCCCce-----eeeecccCCC----------eEEEEEeCCCCEEEEEeCCCc
Q psy6984          66 FISDIVLSS-DGNYALSGSWDKTLRLWDLAAGKT-----TRRFEDHTKD----------VLSVAFSVDNRQIVSSSRDKT  129 (380)
Q Consensus        66 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~h~~~----------v~~~~~~~~~~~~~s~~~d~~  129 (380)
                      ...+++|+| +.+.||.....|+..||++.....     ......+.+.          ...+.|.++-..|+...+. .
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~  225 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-K  225 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-c
Confidence            456899998 456899999999999999922111     1111111122          3367788777777777665 4


Q ss_pred             EEEEeCCCcceEE-EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC
Q psy6984         130 IKLWNTLAHCKFT-IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       130 v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~  182 (380)
                      +.++|+.+..... ........+|..+.-++.....+|+-.+  ..|-..++..
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            6778876654433 3333445678888888764433333222  5677777765

These proteins are found in fungi.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.42  E-value=5  Score=22.01  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=18.8

Q ss_pred             cCCCeEEEEEeCCCCEEEEE-eCC--CcEEEE
Q psy6984         105 HTKDVLSVAFSVDNRQIVSS-SRD--KTIKLW  133 (380)
Q Consensus       105 h~~~v~~~~~~~~~~~~~s~-~~d--~~v~iw  133 (380)
                      ....-...+|+|||+.|+-. ..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44556788999999988754 444  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.51  E-value=32  Score=30.67  Aligned_cols=133  Identities=14%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             EEeCCCCEEEE-EeCCCcEEEE--eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee
Q psy6984         113 AFSVDNRQIVS-SSRDKTIKLW--NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH  189 (380)
Q Consensus       113 ~~~~~~~~~~s-~~~d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  189 (380)
                      +|.+||+.|+- +..|+.-.+|  |+.++...++....... .....++|..+  .++-.-.+..|+-.|+.+.+....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~-~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN-TFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSS--EEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC-ccceEEecCCC--eEEEEECCCeEEEEECCcCcEEEEE
Confidence            56788977665 4456655555  56665554444322221 12345556543  3433334568888899887654444


Q ss_pred             eCCccceEEEE--EcCCCCEEEEEc----------------------CCCcEEEEECCCCcEEEEEEecCceEEEEeecC
Q psy6984         190 SGHTGYLNTVT--VSPDGSLCASGG----------------------KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPN  245 (380)
Q Consensus       190 ~~~~~~i~~~~--~~~~~~~l~~~~----------------------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~  245 (380)
                      .......-...  .+.++..++-.-                      ....|.-.|+.+|+.-..+.....+.-+.++|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            33333332222  345666543221                      123556678888887666666777788888886


Q ss_pred             ccc
Q psy6984         246 RSF  248 (380)
Q Consensus       246 ~~~  248 (380)
                      .+-
T Consensus       199 dp~  201 (386)
T PF14583_consen  199 DPT  201 (386)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            544

>KOG2377|consensus

Probab=83.41  E-value=35  Score=31.00  Aligned_cols=137  Identities=11%  Similarity=0.085  Sum_probs=71.9

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCC---CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          68 SDIVLSSDGNYALSGSWDKTLRLWDLAA---GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      +.+.|....+.|++.- .|.+.=|.+..   .-+...-....++|.++.|++|.+.+|.--.|+.|.+++..........
T Consensus        26 ngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            3455554444444333 33445554432   2223333345679999999999999999999999999986433222111


Q ss_pred             e---CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEE
Q psy6984         145 E---DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCA  209 (380)
Q Consensus       145 ~---~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~  209 (380)
                      .   ...+..|....|..+ ..  ++--. +.-+.+|.....+ .....+.|...|+--.+.++.+.++
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e--~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TE--IAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             HHHhccCcceeEEEEEecC-ee--EEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence            1   112233555555543 22  22221 2234444432211 1122334566677777777776543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.35  E-value=5.8  Score=31.05  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=23.8

Q ss_pred             CceEEEEEecCCC------EEEEEeeCCeEEEEEee
Q psy6984         345 PMCLSLAWSTDGQ------TLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       345 ~~~~~~~~s~dg~------~l~~g~~dg~v~iw~~~  374 (380)
                      ..+..++|||-|-      +||+-..+|.|.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            3678999999652      57778899999999754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.15  E-value=53  Score=32.86  Aligned_cols=118  Identities=18%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--ccccc-cccCC-------CcceEEEEEccCCCEEEEEeCCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQK-RLKGH-------SHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~~-~~~~h-------~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ....+++|+|.+...||.....|...||++.......  ..... ...|+       .+.-..+.|.++-+.|+.+... 
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-
Confidence            3677899999888899999999999999992111110  00000 00111       1223367888888888888764 


Q ss_pred             cEEEEECCCCceeeee--cccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCC
Q psy6984          87 TLRLWDLAAGKTTRRF--EDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~  137 (380)
                      .+.++|+.++.....+  ......|.++.-+|+  +..|+-.+  ..|...+...
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            7889999887653312  234456888888887  33333322  3455555443

These proteins are found in fungi.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=81.88  E-value=43  Score=30.90  Aligned_cols=107  Identities=14%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE------eeCCCcCcEEEEEEccCC----CCCEEEEEe-----
Q psy6984         106 TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI------VEDGHSDWVSCVRFSPNH----QNPIIVSAG-----  170 (380)
Q Consensus       106 ~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~------~~~~~~~~v~~~~~~~~~----~~~~l~s~~-----  170 (380)
                      -.....++|.||++.+++--..|.|++++.........      ...........++++|+-    .+..|+...     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            34567899999997776665568898887543322111      111124557789999874    223333321     


Q ss_pred             -----CCCeEEEEeCCCc-------eeeE-eee---CCccceEEEEEcCCCCEEEEEcCC
Q psy6984         171 -----WDRMVKVWNLTNC-------KLKI-NHS---GHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       171 -----~d~~v~iwd~~~~-------~~~~-~~~---~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                           ....|.-|.+...       +.+. ..+   .|.  -..+.|.|||.++++.+..
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence                 1233444544311       1111 111   233  3467899999877765544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK10115 protease 2; Provisional

Probab=81.87  E-value=56  Score=32.21  Aligned_cols=250  Identities=10%  Similarity=0.032  Sum_probs=0.0

Q ss_pred             eEEEEEccCCCEEE-----EEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC------cEEEEeC
Q psy6984          67 ISDIVLSSDGNYAL-----SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK------TIKLWNT  135 (380)
Q Consensus        67 v~~~~~~~~~~~l~-----s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~------~v~iwd~  135 (380)
                      +..+.++|||++|+     .|+....|++.|+.+++.+........  ..++|.+|++.|+-...+.      .|..+++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC


Q ss_pred             CCc--ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-eEEEEe--CCCceeeEeeeCCccceEEEEEcCCCCEEEE
Q psy6984         136 LAH--CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-MVKVWN--LTNCKLKINHSGHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       136 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  210 (380)
                      .+.  ................+....++...++.+.+... .+.+++  ..+................+....+.-++.+
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~t  286 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRS  286 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEE


Q ss_pred             EcCCCcEEEEECCCC-----cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccce
Q psy6984         211 GGKDMNAMLWDLNDG-----KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDV  285 (380)
Q Consensus       211 ~~~d~~i~i~d~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  285 (380)
                      -......++..+.-.     +.+..-.....+..+.+..+     ...-.........+.+++...+....-.+.....+
T Consensus       287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-----~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~  361 (686)
T PRK10115        287 NRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-----WLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYV  361 (686)
T ss_pred             cCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-----EEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceE


Q ss_pred             eEEEEeec---CCEEEEeeC---CCcEEEEecccceeeeEeecc
Q psy6984         286 LSVAFSVD---NRQIVSSSR---DKTIKLWNTLAHCKFTIVDLE  323 (380)
Q Consensus       286 ~~~~~s~~---~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~  323 (380)
                      ..+.++++   +..+++.+.   -+.+..+|..++....+....
T Consensus       362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~  405 (686)
T PRK10115        362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTE  405 (686)
T ss_pred             eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecC

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.80  E-value=16  Score=34.76  Aligned_cols=69  Identities=17%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             cCCCEEEEEeCCCcEEEEECCC----Cceeee-----------ec-----------ccCCCeEEEEEeC----CCCEEEE
Q psy6984          74 SDGNYALSGSWDKTLRLWDLAA----GKTTRR-----------FE-----------DHTKDVLSVAFSV----DNRQIVS  123 (380)
Q Consensus        74 ~~~~~l~s~~~d~~i~vwd~~~----~~~~~~-----------~~-----------~h~~~v~~~~~~~----~~~~~~s  123 (380)
                      ++...++.+..||.+.......    +.....           +.           .....+..+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4677888889999988877654    211111           00           0112345566666    6789999


Q ss_pred             EeCCCcEEEEeCCCcceEE
Q psy6984         124 SSRDKTIKLWNTLAHCKFT  142 (380)
Q Consensus       124 ~~~d~~v~iwd~~~~~~~~  142 (380)
                      -+.|+++|+||+.++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EETTSEEEEEETTTTCEEE
T ss_pred             EeCCCeEEEEECCCCeEEE
Confidence            9999999999998877643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1900|consensus

Probab=81.55  E-value=36  Score=35.27  Aligned_cols=137  Identities=13%  Similarity=0.277  Sum_probs=80.8

Q ss_pred             eCCCcEEEEECCCCceeeeecccCCCeEEEEEe--------CCCCEEEEEeCCCcEEEEeCC----CcceEEE----eeC
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS--------VDNRQIVSSSRDKTIKLWNTL----AHCKFTI----VED  146 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--------~~~~~~~s~~~d~~v~iwd~~----~~~~~~~----~~~  146 (380)
                      +-|..+.+|+.+++.....+.+-...|..+..-        |.=++++.-+.--.+.++-+.    +......    ...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            456789999999987777777666667666542        333444444444445555321    1111000    001


Q ss_pred             CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC----CC------cee--------------eEeee-CCccceEEEEE
Q psy6984         147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL----TN------CKL--------------KINHS-GHTGYLNTVTV  201 (380)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~----~~------~~~--------------~~~~~-~~~~~i~~~~~  201 (380)
                      ...-.|.|+....+|+  +|+ +|.||  .+|.+    .+      +..              ....+ .+..+|..+.+
T Consensus       176 ~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             cCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence            1233577888555443  444 45566  45543    11      000              11223 45668999999


Q ss_pred             cCCCCEEEEEcCCCcEEEEECCC
Q psy6984         202 SPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       202 ~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      +..-..+.+-+..+.+.+||+..
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccceeeeeccCceEEEEEccC
Confidence            98888999999999999999865

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.38  E-value=18  Score=28.24  Aligned_cols=33  Identities=9%  Similarity=0.142  Sum_probs=25.2

Q ss_pred             CcEEEEEEccCC----CCCEEEEEeCCCeEEEEeCCC
Q psy6984         150 DWVSCVRFSPNH----QNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       150 ~~v~~~~~~~~~----~~~~l~s~~~d~~v~iwd~~~  182 (380)
                      ..+..++|+|.+    ..-+|++...++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368899999954    245678888899999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900|consensus

Probab=81.35  E-value=28  Score=35.98  Aligned_cols=140  Identities=14%  Similarity=0.225  Sum_probs=80.0

Q ss_pred             EEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEE--------EccCCCEEEEEeCCCcEEEEECCCCcee-----
Q psy6984          33 LSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIV--------LSSDGNYALSGSWDKTLRLWDLAAGKTT-----   99 (380)
Q Consensus        33 ~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----   99 (380)
                      +..+.|+.+.+|+...++..     ..+.+-...|..|.        |.|.=++++.-..--.|.++-+.-++..     
T Consensus        93 aWiTiDn~L~lWny~~~~e~-----~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~  167 (1311)
T KOG1900|consen   93 AWITIDNNLFLWNYESDNEL-----AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI  167 (1311)
T ss_pred             eEEEeCCeEEEEEcCCCCcc-----ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence            55567899999998863321     12233333344433        3334455555555556777654322111     


Q ss_pred             ----eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---------Ccce---------------EEEeeCCCcCc
Q psy6984         100 ----RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL---------AHCK---------------FTIVEDGHSDW  151 (380)
Q Consensus       100 ----~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~---------~~~~---------------~~~~~~~~~~~  151 (380)
                          -++....-.|.|+....+|+.+++|-.|   .+|.+.         ..+.               +..+...+.++
T Consensus       168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp  244 (1311)
T KOG1900|consen  168 FNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP  244 (1311)
T ss_pred             cccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence                1112224568888877788877776555   455421         0010               00111245667


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCC
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~  182 (380)
                      |..+.+..  ...++++-+..++|+.||+..
T Consensus       245 I~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  245 IRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            88888764  345788889999999999975

>smart00564 PQQ beta-propeller repeat

Probab=81.31  E-value=4.7  Score=21.01  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=20.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeee
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRR  101 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~  101 (380)
                      ..++.++.++.+..+|..+|+.+.+
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3678888999999999988877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.18  E-value=20  Score=26.54  Aligned_cols=110  Identities=5%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCc--------eeeeecccCCCeEEEEEeC-----CCCEEEEEeCCCcEEEEeCCC
Q psy6984          71 VLSSDGNYALSGSWDKTLRLWDLAAGK--------TTRRFEDHTKDVLSVAFSV-----DNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        71 ~~~~~~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~h~~~v~~~~~~~-----~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      .|......|+.+..-|.|.|++.....        .++.+ .-..+|++++-.+     +...|+.|+. ..+..||...
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            454445578888888899999876432        22222 2345677776543     2345666655 4688999765


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCC--CCCEEEEEeCCCeEEEEeCCCcee
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNH--QNPIIVSAGWDRMVKVWNLTNCKL  185 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~  185 (380)
                      .......  .-.+.++++.+-.-+  ..++++.|+ +..|.-||....+.
T Consensus        83 N~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   83 NSDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEI  129 (136)
T ss_pred             Cchhhhh--hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEE
Confidence            5443222  234567777764222  233444443 66676666655443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.65  E-value=44  Score=30.55  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             ceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         346 MCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       346 ~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      .+.+++..+..+.|++.+.+|.|++|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            377889989899999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG3630|consensus

Probab=80.17  E-value=14  Score=37.33  Aligned_cols=96  Identities=16%  Similarity=0.014  Sum_probs=59.6

Q ss_pred             ceEEEEEccCC-CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          66 FISDIVLSSDG-NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        66 ~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      ...++.|+|.- ...+....|+.|++..+.-......--......++++|+|.|..++.|-..|++.-|.........+-
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip  236 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIP  236 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeeccc
Confidence            35567787753 23566778888888765432221111123456899999999999999999999988864332111111


Q ss_pred             eCC--CcCcEEEEEEccCC
Q psy6984         145 EDG--HSDWVSCVRFSPNH  161 (380)
Q Consensus       145 ~~~--~~~~v~~~~~~~~~  161 (380)
                      ...  ....|.||.|....
T Consensus       237 ~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  237 EPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             CCCcCCCcceeEEEEecce
Confidence            111  12357888887643

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=80.14  E-value=5.3  Score=20.18  Aligned_cols=24  Identities=21%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             EEEEEecCCCEEEEEeeCCeEEEE
Q psy6984         348 LSLAWSTDGQTLFAGYSDNTIRVW  371 (380)
Q Consensus       348 ~~~~~s~dg~~l~~g~~dg~v~iw  371 (380)
                      ..++.+++|+++++=+.++.|+++
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEEC
Confidence            367788999999988888888775

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-126
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-125
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-103
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-79
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-70
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-26
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-70
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-26
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-70
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-26
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-70
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-25
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-69
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-26
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-67
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-25
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-62
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		8e-35
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-26
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-15
2h9l_A	329	Wdr5delta23 Length = 329		1e-20
2h9l_A	329	Wdr5delta23 Length = 329		5e-20
2h9l_A	329	Wdr5delta23 Length = 329		5e-15
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-15
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-15
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-15
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-15
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-15
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-15
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-15
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-15
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-15
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-15
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-13
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-15
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-15
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-13
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-18
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-17
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-16
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-14
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-14
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-11
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-14
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		9e-12
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-14
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-14
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-12
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-14
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-12
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-14
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-12
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-13
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-10
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-04
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-12
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		8e-12
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-10
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-10
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-09
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-10
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-04
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-10
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-10
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-08
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-08
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-08
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-08
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-08
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-07
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		5e-07
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		1e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		7e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		9e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		9e-05
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-04

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/378 (58%), Positives = 265/378 (70%), Gaps = 60/378 (15%)
Query: 1   MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
           M TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L
Sbjct: 23  MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL 82
Query: 61  KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
           +GHSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQ
Sbjct: 83  RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
           IVS SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL
Sbjct: 143 IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240
            NCKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL            
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL------------ 250
Query: 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
                                     Y ++ G           D+++      NR  + +
Sbjct: 251 --------------------------YTLDGG-----------DIINALCFSPNRYWLCA 273
Query: 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF 360
           +   +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLF
Sbjct: 274 ATGPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 361 AGYSDNTIRVWQVSVTSR 378
           AGY+DN +RVWQV++ +R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  445 bits (1144), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/376 (59%), Positives = 264/376 (70%), Gaps = 60/376 (15%)
Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           TE + LRGTL GHNGWVTQIAT P+FPD ILS SRD T+I+WKLTRD+TNYG+PQ+ L+G
Sbjct: 2   TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG 61
Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           HSHF+SD+V+SSDG +ALSGSWD TLRLWDL  G TTRRF  HTKDVLSVAFS DNRQIV
Sbjct: 62  HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 123 SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           S SRDKTIKLWNTL  CK+T+ ++ HS+WVSCVRFSPN  NPIIVS GWD++VKVWNL N
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 183 CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
           CKLK NH GHTGYLNTVTVSPDGSLCASGGKD  AMLWDLN+GKHL              
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------- 227
Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
                                   Y ++ G           D+++      NR  + ++ 
Sbjct: 228 ------------------------YTLDGG-----------DIINALCFSPNRYWLCAAT 252
Query: 303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG 362
             +IK+W           DLE K +V+EL+ +V+S S+KA+PP C SLAWS DGQTLFAG
Sbjct: 253 GPSIKIW-----------DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301
Query: 363 YSDNTIRVWQVSVTSR 378
           Y+DN +RVWQV++ +R
Sbjct: 302 YTDNLVRVWQVTIGTR 317

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/381 (51%), Positives = 240/381 (62%), Gaps = 72/381 (18%)
Query: 6   LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
           L L+GT+  H   VT IAT     D I+S SRD ++I+WKLT+DD  YGV Q+RL GHSH
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 66  FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
           F+ D+VLSSDG +ALSGSWD  LRLWDLAAG +TRRF  HTKDVLSVAFS+DNRQIVS+S
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS 491
Query: 126 RDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183
           RD+TIKLWNTL  CK+TI E  +GH DWVSCVRFSPN   P IVSA WD+ VKVWNL+NC
Sbjct: 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS 243
           KL+   +GHTGY++TV VSPDGSLCASGGKD   +LWDL +GK L++L  N +I ALCFS
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611
Query: 244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303
           PNR +                +     HG                               
Sbjct: 612 PNRYW----------------LCAATEHG------------------------------- 624
Query: 304 KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD---PP-------MCLSLAWS 353
             IK+W+           LE+K +VE+L+ D+ +++ KAD   P         C SL WS
Sbjct: 625 --IKIWD-----------LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671
Query: 354 TDGQTLFAGYSDNTIRVWQVS 374
            DG TLF+GY+D  IRVW + 
Sbjct: 672 ADGSTLFSGYTDGVIRVWGIG 692

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  291 bits (744), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/377 (42%), Positives = 211/377 (55%), Gaps = 70/377 (18%)
Query: 5   TLQLRGTLNGHNGWVTQIATNPKFPDT---ILSCSRDNTLIIWKLTRD----DTNYGVPQ 57
            +   G L GH GWVT +A  P+ P+T   ++S SRD TL+ W    D    + +YG+P 
Sbjct: 2   AVAYEGQLTGHRGWVTSLAC-PQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPD 60
Query: 58  KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD 117
           +RL+GHS F+SD+ LS++GN+A+S SWD +LRLW+L  G+   +F  HTKDVLSVAFS D
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 118 NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
           NRQIVS  RD  +++WN    C  T+    H+DWVSCVRFSP+   P+IVS GWD +VKV
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
           W+L   +L  +  GHT Y+ +VTVSPDGSLCAS  KD  A LWDL  G+ L  +     I
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297
             +CFSP                                                 NR  
Sbjct: 241 NQICFSP-------------------------------------------------NRYW 251
Query: 298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ 357
           + ++ +K I+           I DLE K ++ EL P+   Q +K   P C+S+AWS DG 
Sbjct: 252 MCAATEKGIR-----------IFDLENKDIIVELAPE--HQGSKKIVPECVSIAWSADGS 298
Query: 358 TLFAGYSDNTIRVWQVS 374
           TL++GY+DN IRVW VS
Sbjct: 299 TLYSGYTDNVIRVWGVS 315

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score =  263 bits (671), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 11/318 (3%)
Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
           S E L LRGTL GHNGWVT +AT+   P+ +LS SRD TLI WKLT DD  +GVP +  K
Sbjct: 3   SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
           GHSH + D  L++DG YALS SWDKTLRLWD+A G+T +RF  H  DV+SV        I
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
           +S SRDKTIK+W     C  T++  GH+DWVS VR  PN +    +  I+SAG D+MVK 
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
           WNL   +++ +  GH   +NT+T SPDG+L AS GKD   MLW+L   K ++TL   D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
            +L FSPNR +  +    +  ++  +L   Y ++  + E   +S   +   +S+A+S D 
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWNTL 312
           + + +   D  I++W  +
Sbjct: 299 QTLFAGYTDNVIRVWQVM 316

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 156/332 (46%), Gaps = 37/332 (11%)
Query: 55  VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
           V +  L+GH+ +++ +  S+   N  LS S DKTL  W L       G   R F+ H+  
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
           V     + D    +S+S DKT++LW+      +       SD +S      + +  +I+S
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
              D+ +KVW +    L     GH  +++ V V P      D     S G D     W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
           N  +     + HN  I  L  SP+ +       I+   +   ++L+ +   K      S 
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
             +V S+AFS  NR  ++++    IK+++           L+ + +V++LRP+    S  
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGYSAA 284
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
           A+P   +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 285 AEP-HAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 11/318 (3%)
Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
           S E L LRGTL GHNGWVT +AT+   P+ +LS SRD TLI WKLT DD  +GVP +  K
Sbjct: 3   SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
           GHSH + D  L++DG YALS SWDKTLRLWD+A G+T +RF  H  DV+SV        I
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
           +S SRDKTIK+W     C  T++  GH+DWVS VR  PN +    +  I+SAG D+MVK 
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
           WNL   +++ +  GH   +NT+T SPDG+L AS GKD   MLW+L   K ++TL   D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
            +L FSPNR +  +    +  ++  +L   Y ++  + E   +S   +   +S+A+S D 
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWNTL 312
           + + +   D  I++W  +
Sbjct: 299 QTLFAGYTDNVIRVWQVM 316

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 154/332 (46%), Gaps = 37/332 (11%)
Query: 55  VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
           V +  L+GH+ +++ +  S+   N  LS S DKTL  W L       G   R F+ H+  
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
           V     + D    +S+S DKT++LW+      +       SD +S      + +  +I+S
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
              D+ +KVW +    L     GH  +++ V V P      D     S G D     W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
           N  +     + HN  I  L  SP+ +       I+   +   ++L+ +   K      S 
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
             +V S+AFS  NR  ++++    IK           +  L+ + +V++LRP+    S K
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIK-----------VFSLDPQYLVDDLRPEFAGYS-K 283
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
           A  P  +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/318 (44%), Positives = 195/318 (61%), Gaps = 11/318 (3%)
Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
           S E L LRGTL GHNGWVT +AT+   P+ +LS SRD TLI WKLT DD  +GVP +  K
Sbjct: 3   SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
           GHSH + D  L++DG YALS SWDKTLRLWD+A G+T +RF  H  DV+SV        I
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
           +S SRDKTIK+W     C  T++  GH+DWVS VR  PN +    +  I+SAG D+MVK 
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
           WNL   +++ +  GH   +NT+T SPDG+L AS GKD   MLW+L   K ++TL   D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
            +L FSPNR +  +    +  ++  +L   Y ++  + E   +S   +   +S+A+S D 
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWNTL 312
           + + +   D  I++W  +
Sbjct: 299 QTLFAGYTDNVIRVWQVM 316

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 156/332 (46%), Gaps = 37/332 (11%)
Query: 55  VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
           V +  L+GH+ +++ +  S+   N  LS S DKTL  W L       G   R F+ H+  
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
           V     + D    +S+S DKT++LW+      +       SD +S      + +  +I+S
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
              D+ +KVW +    L     GH  +++ V V P      D     S G D     W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
           N  +     + HN  I  L  SP+ +       I+   +   ++L+ +   K      S 
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
             +V S+AFS  NR  ++++    IK+++           L+ + +V++LRP+    S K
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGYS-K 283
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
           A  P  +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score =  261 bits (667), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 141/316 (44%), Positives = 194/316 (61%), Gaps = 11/316 (3%)
Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
           S E L LRGTL GHNGWVT +AT+   P+ +LS SRD TLI WKLT DD  +GVP +  K
Sbjct: 3   SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
           GHSH + D  L++DG YALS SWDKTLRLWD+A G+T +RF  H  DV+SV        I
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
           +S SRDKTIK+W     C  T++  GH+DWVS VR  PN +    +  I+SAG D+MVK 
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
           WNL   +++ +  GH   +NT+T SPDG+L AS GKD   MLW+L   K ++TL   D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
            +L FSPNR +  +    +  ++  +L   Y ++  + E   +S   +   +S+A+S D 
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWN 310
           + + +   D  I++W 
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 153/331 (46%), Gaps = 37/331 (11%)
Query: 55  VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
           V +  L+GH+ +++ +  S+   N  LS S DKTL  W L       G   R F+ H+  
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
           V     + D    +S+S DKT++LW+      +       SD +S      + +  +I+S
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 124
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
              D+ +KVW +    L     GH  +++ V V P      D     S G D     W+L
Sbjct: 125 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
           N  +     + HN  I  L  SP+ +       I+   +   ++L+ +   K      S 
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 236
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
             +V S+AFS  NR  ++++    IK           +  L+ + +V++LRP+    S K
Sbjct: 237 QDEVFSLAFS-PNRYWLAAATATGIK-----------VFSLDPQYLVDDLRPEFAGYS-K 283
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372
           A  P  +SLAWS DGQTLFAGY+DN IRVWQ
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score =  259 bits (661), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/314 (44%), Positives = 193/314 (61%), Gaps = 11/314 (3%)
Query: 6   LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
           L LRGTL GHNGWVT +AT+   P+ +LS SRD TLI WKLT DD  +GVP +  KGHSH
Sbjct: 1   LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 66  FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
            + D  L++DG YALS SWDKTLRLWD+A G+T +RF  H  DV+SV        I+S S
Sbjct: 61  IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 126 RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKVWNLT 181
           RDKTIK+W     C  T++  GH+DWVS VR  PN +    +  I+SAG D+MVK WNL 
Sbjct: 121 RDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 182 NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC 241
             +++ +  GH   +NT+T SPDG+L AS GKD   MLW+L   K ++TL   D + +L 
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238
Query: 242 FSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDNRQIV 298
           FSPNR +  +    +  ++  +L   Y ++  + E   +S   +   +S+A+S D + + 
Sbjct: 239 FSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 296
Query: 299 SSSRDKTIKLWNTL 312
           +   D  I++W  +
Sbjct: 297 AGYTDNVIRVWQVM 310

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 156/332 (46%), Gaps = 37/332 (11%)
Query: 55  VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
           V +  L+GH+ +++ +  S+   N  LS S DKTL  W L       G   R F+ H+  
Sbjct: 2   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
           V     + D    +S+S DKT++LW+      +       SD +S      + +  +I+S
Sbjct: 62  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV---DIDKKASMIIS 118
Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAMLWDL 222
              D+ +KVW +    L     GH  +++ V V P      D     S G D     W+L
Sbjct: 119 GSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL 281
           N  +     + HN  I  L  SP+ +       I+   +   ++L+ +   K      S 
Sbjct: 178 NQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIMLWNL-AAKKAMYTLSA 230
Query: 282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK 341
             +V S+AFS  NR  ++++    IK+++           L+ + +V++LRP+    S K
Sbjct: 231 QDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGYS-K 277
Query: 342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
           A  P  +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 278 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/316 (43%), Positives = 190/316 (60%), Gaps = 11/316 (3%)
Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
           S E L LRGTL GHNGWVT +AT+   P+ +LS SRD TLI WKLT DD  +GVP +  K
Sbjct: 3   SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
           GHSH + D  L++DG YALS SWDKTLRLWD+A G+T +RF  H  DV SV        I
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ----NPIIVSAGWDRMVKV 177
           +S SRDKTIK+W     C  T++  GH+DWVS VR  PN +    +  I+SAG D+ VK 
Sbjct: 123 ISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 178 WNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
           WNL   +++ +  GH   +NT+T SPDG+L AS GKD    LW+L   K  +TL   D +
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEV 240
Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNL-ILYPINHGKMETPFFSLFRD--VLSVAFSVDN 294
            +L FSPNR +  +    +  ++  +L   Y ++  + E   +S   +   +S+A+S D 
Sbjct: 241 FSLAFSPNRYW--LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG 298
Query: 295 RQIVSSSRDKTIKLWN 310
           + + +   D  I++W 
Sbjct: 299 QTLFAGYTDNVIRVWQ 314

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 156/335 (46%), Gaps = 43/335 (12%)
Query: 55  VPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKD 108
           V +  L+GH+ +++ +  S+   N  LS S DKTL  W L       G   R F+ H+  
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLA---HCKFTIVEDGHSDWVSCVRFSPNHQNPI 165
           V     + D    +S+S DKT++LW+      + +F     GH   V  V    + +   
Sbjct: 68  VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVXSVDI--DKKASX 121
Query: 166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------DGSLCASGGKDMNAML 219
           I+S   D+ +KVW +    L     GH  +++ V V P      D     S G D     
Sbjct: 122 IISGSRDKTIKVWTIKGQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 220 WDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF 278
           W+LN  +     + HN  I  L  SP+ +       I+   +   + L+ +   K     
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTL------IASAGKDGEIXLWNL-AAKKAXYT 233
Query: 279 FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ 338
            S   +V S+AFS  NR  ++++    IK+++           L+ + +V++LRP+    
Sbjct: 234 LSAQDEVFSLAFS-PNRYWLAAATATGIKVFS-----------LDPQYLVDDLRPEFAGY 281
Query: 339 STKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
           S KA  P  +SLAWS DGQTLFAGY+DN IRVWQV
Sbjct: 282 S-KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score =  234 bits (597), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/386 (36%), Positives = 200/386 (51%), Gaps = 74/386 (19%)
Query: 9   RGTLNGHNGWVTQIAT------NPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRL 60
           RG L GH+ WVT I        N   P  ++S SRD T++IWKL  ++ N  +G+P K L
Sbjct: 14  RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL 72
Query: 61  KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
            GH+HF+SD+ LS +  +A+S SWDKTLRLWDL  G T +RF  H  +V SVAFS DNRQ
Sbjct: 73  TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQN--------PIIVSAGW 171
           I+S+  ++ IKLWN L  CKF+  E + HSDWVSCVR+SP  ++        P   S GW
Sbjct: 133 ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
           D  +KVWN TN +++     H   +N +++SP+G   A+GGKD   ++WD          
Sbjct: 193 DGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD---------- 241
Query: 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFS 291
                I  L + P R F     D   T+ +                          +AF+
Sbjct: 242 -----ILNLTY-PQREF-----DAGSTINQ--------------------------IAFN 264
Query: 292 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA 351
               Q V+   D+ +K++N +   K  +  +E +       P   ++  K   P C SLA
Sbjct: 265 -PKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAE-------PITKAEGQKGKNPQCTSLA 316
Query: 352 WSTDGQTLFAGYSDNTIRVWQVSVTS 377
           W+  G+ LFAG++D  IR +    ++
Sbjct: 317 WNALGKKLFAGFTDGVIRTFSFETSA 342

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 60/241 (24%)
Query: 146 DGHSDWVSCV--RFS--PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTV 201
           +GHSDWV+ +   FS   N  +P+++S   D+ V +W       K+      GY      
Sbjct: 18  EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIW-------KLYEEEQNGYFGI--- 67
Query: 202 SPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQK 261
            P  +L                         HN  ++ L  S    F      IS +  K
Sbjct: 68  -PHKALTG-----------------------HNHFVSDLALSQENCFA-----ISSSWDK 98
Query: 262 SNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD 321
           + L L+ +  G     F     +V SVAFS DNRQI+S+  ++ IKLWN L  CKF+  +
Sbjct: 99  T-LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 322 LETKK-MVEELR-PDVVSQSTKADP--PMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS 377
            E     V  +R   ++  + K  P  P   S+ W            D  ++VW  +   
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW------------DGRLKVWNTNFQI 205
Query: 378 R 378
           R
Sbjct: 206 R 206

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  144 bits (363), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 176/386 (45%), Gaps = 42/386 (10%)
Query: 7   QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
           QL  TL GH+  V  +A +P    TI S S D T+ +W         G   + L GHS  
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN------RNGQLLQTLTGHSSS 264
Query: 67  ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
           ++ +    DG    S S DKT++LW+   G+  +    H+  V  VAFS D + I S+S 
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
           DKT+KLWN       T+   GHS  V  V FSP+ Q   I SA  D+ VK+WN  N +L 
Sbjct: 324 DKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLL 378
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN 245
              +GH+  +  V  SPDG   AS   D    LW+ N G+ L TL  H+  +  + FSP+
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPD 437
Query: 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT 305
                    I+       + L+  N G++          V  VAFS D + I S+S DKT
Sbjct: 438 DQT------IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD--------------------PP 345
           +KLWN       T+    +        PD  + ++ +D                      
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 550
Query: 346 MCLSLAWSTDGQTLFAGYSDNTIRVW 371
               +A+S DGQT+ +  SD T+++W
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVKLW 576

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 127/276 (46%), Gaps = 35/276 (12%)
Query: 97  KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
           K   R E H+  V  VAFS D + I S+S DKT+KLWN       T+   GHS  V  V 
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVA 64
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMN 216
           FSP+ Q   I SA  D+ VK+WN  N +L    +GH+  +  V  SPDG   AS   D  
Sbjct: 65  FSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 217 AMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME 275
             LW+ N G+ L TL  H+  +  + FSP+         I+       + L+  N G++ 
Sbjct: 122 VKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQT------IASASDDKTVKLWNRN-GQLL 173
Query: 276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDV 335
                    V  VAFS D + I S+S DKT+KLWN                     R   
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN---------------------RNGQ 212
Query: 336 VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW 371
           + Q+          +A+S DGQT+ +   D T+++W
Sbjct: 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 139/322 (43%), Gaps = 38/322 (11%)
Query: 11  TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
            L+GH   VT++  +P F   ++S S D T+ +W     D   G  ++ LKGH+  + DI
Sbjct: 103 ALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVW-----DYETGDFERTLKGHTDSVQDI 156
Query: 71  VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI 130
                G    S S D T++LWD    +  R    H  +V SV+   +   IVS+SRDKTI
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 131 KLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH 189
           K+W     +C  T    GH +WV  VR  PN    +I S   D+ V+VW +   + K   
Sbjct: 217 KMWEVQTGYCVKTFT--GHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAEL 272
Query: 190 SGHTGYLNTVTVSPD--------------------GSLCASGGKDMNAMLWDLNDGKHLH 229
             H   +  ++ +P+                    G    SG +D    +WD++ G  L 
Sbjct: 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 230 TLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV 288
           TLV H++ +  + F     F      I        L ++   + +      +    V S+
Sbjct: 333 TLVGHDNWVRGVLFHSGGKF------ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 289 AFSVDNRQIVSSSRDKTIKLWN 310
            F      +V+ S D+T+K+W 
Sbjct: 387 DFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 19/234 (8%)
Query: 147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS 206
           GH   V+ V F P     ++VSA  D  +KVW+      +    GHT  +  ++    G 
Sbjct: 106 GHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 207 LCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI 265
           L AS   DM   LWD    + + T+  H+  ++++   PN         I    +   + 
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH------IVSASRDKTIK 217
Query: 266 LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVD--- 321
           ++ +  G     F      V  V  + D   I S S D+T+++W      CK  + +   
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 322 -LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
            +E      E     +S++T ++            G  L +G  D TI++W VS
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKS-----GKPGPFLLSGSRDKTIKMWDVS 326

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 37  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 90
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 91  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 264
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 265 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 323 NDKTIKLWKS 332

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 156
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 213
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 214 ----NPPVSF---------------------------------------VKFSPNGKYIL 230
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 271
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 272 KWIVSGSEDNLVYIWNL 288

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 38  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 148
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 149 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 208 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 244

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 32  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 85
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 86  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 146 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 259
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 260 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 318 NDKTIKLWKS 327

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 36  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 96  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 151
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 208
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 209 ----NPPVSF---------------------------------------VKFSPNGKYIL 225
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 226 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 266
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 267 KWIVSGSEDNLVYIWNL 283

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 33  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 143
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 144 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 202
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 203 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 239

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 20  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 73
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 74  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 134 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 247
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 248 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 306 NDKTIKLWKS 315

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 24  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 84  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 139
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 196
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 197 ----NPPVSF---------------------------------------VKFSPNGKYIL 213
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 214 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 254
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 255 KWIVSGSEDNLVYIWNL 271

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 21  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 131
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 132 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 190
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 191 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 227

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 39  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 92
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 93  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 153 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 266
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 267 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 325 NDKTIKLWKS 334

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 43  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 158
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 215
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 216 ----NPPVSF---------------------------------------VKFSPNGKYIL 232
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 233 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 273
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 274 KWIVSGSEDNLVYIWNL 290

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 40  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 150
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 151 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 209
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 210 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 246

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 21  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 74
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 248
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 249 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 307 NDKTIKLWKS 316

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 140
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 197
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 198 ----NPPVSF---------------------------------------VKFSPNGKYIL 214
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 255
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 256 KWIVSGSEDNLVYIWNL 272

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 22  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 132
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 133 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 192 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 11  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 64
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 65  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 125 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 238
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 239 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 297 NDKTIKLWKS 306

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 15  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 75  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 130
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 187
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 188 ----NPPVSF---------------------------------------VKFSPNGKYIL 204
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 205 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 245
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 246 KWIVSGSEDNLVYIWNL 262

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 12  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 122
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 123 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 182 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 218

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 21  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 74
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 248
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 249 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 307 NDKTIKLWKS 316

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 25  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 85  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 140
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 197
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 198 ----NPPVSF---------------------------------------VKFSPNGKYIL 214
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 215 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 255
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 256 KWIVSGSEDNLVYIWNL 272

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 22  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 132
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 133 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 192 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 21  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 74
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 75  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 248
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 249 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 307 NDKTIKLWKS 316

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 73/332 (21%)
Query: 45  KLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED 104
           K T    NY + +  L GH+  +S +  S +G +  S S DK +++W    GK  +    
Sbjct: 11  KPTPVKPNYAL-KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQN 163
           H   +  VA+S D+  +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+
Sbjct: 70  HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QS 125
Query: 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN 223
            +IVS  +D  V++W++   K       H+  ++ V  + DGSL  S   D    +WD  
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 224 DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR 283
            G+ L TL+ +D       +P  SF                                   
Sbjct: 186 SGQCLKTLIDDD-------NPPVSF----------------------------------- 203
Query: 284 DVLSVAFSVDNRQIVSSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKA 342
               V FS + + I++++ D T+KLW+ +   C  T    + +K                
Sbjct: 204 ----VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--------------- 244
Query: 343 DPPMCLSLAWS-TDGQTLFAGYSDNTIRVWQV 373
               C+   +S T G+ + +G  DN + +W +
Sbjct: 245 ----CIFANFSVTGGKWIVSGSEDNLVYIWNL 272

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 22  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 132
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 133 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 191
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 192 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 16  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 69
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 70  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 130 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 243
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 244 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 302 NDKTIKLWKS 311

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 20  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 80  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 135
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 192
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 193 ----NPPVSF---------------------------------------VKFSPNGKYIL 209
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 210 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 250
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 251 KWIVSGSEDNLVYIWNL 267

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 17  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 127
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 128 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 186
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 187 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 223

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 15  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 68
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 242
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 243 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 301 NDKTIKLWKS 310

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 134
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 191
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 192 ----NPPVSF---------------------------------------VKFSPNGKYIL 208
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 249
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 250 KWIVSGSEDNLVYIWNL 266

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 16  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 126
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 127 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 186 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 14  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 67
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 68  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 128 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 241
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 242 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 300 NDKTIKLWKS 309

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 18  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 78  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 133
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 190
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 191 ----NPPVSF---------------------------------------VKFSPNGKYIL 207
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 208 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 248
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 249 KWIVSGSEDNLVYIWNL 265

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 15  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 125
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 126 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 184
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 185 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 221

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 15  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 68
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 69  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 242
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 243 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 301 NDKTIKLWKS 310

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 19  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 79  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 134
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 191
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 192 ----NPPVSF---------------------------------------VKFSPNGKYIL 208
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 209 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 249
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 250 KWIVSGSEDNLVYIWNL 266

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 16  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 126
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 127 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 185
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 186 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 146/309 (47%), Gaps = 18/309 (5%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L  TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 18  LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D +  LWD + GK L T   H +     C   
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN--EKYCIFA 245
Query: 245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS--R 302
           N S    K  +S + + + + ++ +   ++          V+S A       I S++   
Sbjct: 246 NFSVTGGKWIVSGS-EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 303 DKTIKLWNT 311
           DKTIKLW +
Sbjct: 305 DKTIKLWKS 313

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++           H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D  +KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 212 AATLDNDLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 253 KWIVSGSEDNMVYIWNL 269

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 32/236 (13%)
Query: 141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVT 200
           FT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V 
Sbjct: 20  FTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTL 259
            S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S + 
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGSF 130
Query: 260 QKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFT 318
            +S + ++ +  G       +    V +V F+ D   IVSSS D   ++W+T +  C  T
Sbjct: 131 DES-VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           ++D +                   +PP+   + +S +G+ + A   DN +++W  S
Sbjct: 190 LIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNDLKLWDYS 225

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 20/310 (6%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L+ TL GH   V+ +  +P   + + + S D  + IW         G  +K + GH   I
Sbjct: 18  LKFTLAGHTKAVSSVKFSPN-GEWLAASSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 132 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 245
Query: 245 NRSFQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-- 301
           N S    K  +S +  + NL+ ++ +   ++          V+S A       I S++  
Sbjct: 246 NFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 302 RDKTIKLWNT 311
            DKTIKLW +
Sbjct: 304 NDKTIKLWKS 313

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  + S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 253 KWIVSGSEDNLVYIWNL 269

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +     SA  D+++K+W   + K +   SGH   ++ V
Sbjct: 19  KFTLA--GHTKAVSSVKFSPNGEWLAASSA--DKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 129
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 130 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 189 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 7   QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
           +   T++GH   ++ +A +    + ++S S D TL IW     D + G   K LKGHS++
Sbjct: 59  KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 112
Query: 67  ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
           +     +   N  +SGS+D+++R+WD+  GK  +    H+  V +V F+ D   IVSSS 
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
           D   ++W+T +  C  T+++D +   VS V+FSPN +   I++A  D  +K+W+ +  K 
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 229
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
              ++GH      +  +     G    SG +D    +W+L   + +  L  H D++ +  
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 242 FSPNR 246
             P  
Sbjct: 290 CHPTE 294

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 253 KWIVSGSEDNLVYIWNL 269

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 19  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 129
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 130 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 189 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 7   QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
           +   T++GH   ++ +A +    + ++S S D TL IW     D + G   K LKGHS++
Sbjct: 59  KFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIW-----DVSSGKCLKTLKGHSNY 112
Query: 67  ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
           +     +   N  +SGS+D+++R+WD+  GK  +    H+  V +V F+ D   IVSSS 
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 172
Query: 127 DKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
           D   ++W+T +  C  T+++D +   VS V+FSPN +   I++A  D  +K+W+ +  K 
Sbjct: 173 DGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGK--YILAATLDNTLKLWDYSKGKC 229
Query: 186 KINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALC 241
              ++GH      +  +     G    SG +D    +W+L   + +  L  H D++ +  
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 242 FSPNR 246
             P  
Sbjct: 290 CHPTE 294

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++   K       H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 253 KWIVSGSEDNLVYIWNL 269

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 32/237 (13%)
Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
           KFT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V
Sbjct: 19  KFTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRT 258
             S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGS 129
Query: 259 LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKF 317
             +S + ++ +  GK      +    V +V F+ D   IVSSS D   ++W+T +  C  
Sbjct: 130 FDES-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 188
Query: 318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           T++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 189 TLIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 145/309 (46%), Gaps = 18/309 (5%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L  TL GH   V+ +  +P   + + S S D  + IW         G  +K + GH   I
Sbjct: 18  LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 71
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
           SD+  SSD N  +S S DKTL++WD+++GK  +  + H+  V    F+  +  IVS S D
Sbjct: 72  SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 128 KTIKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-L 185
           +++++W+     C  T+    HSD VS V F  N    +IVS+ +D + ++W+  + + L
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSP 244
           K         ++ V  SP+G    +   D    LWD + GK L T   H +     C   
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFA 245
Query: 245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS--R 302
           N S    K  +S + + + + ++ +   ++          V+S A       I S++   
Sbjct: 246 NFSVTGGKWIVSGS-EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Query: 303 DKTIKLWNT 311
           DKTIKLW +
Sbjct: 305 DKTIKLWKS 313

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 137/317 (43%), Gaps = 72/317 (22%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH+  +S +  S +G +  S S DK +++W    GK  +    H   +  VA+S D+ 
Sbjct: 22  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 120 QIVSSSRDKTIKLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
            +VS+S DKT+K+W+ +   C  T+   GHS++V C  F+P  Q+ +IVS  +D  V++W
Sbjct: 82  LLVSASDDKTLKIWDVSSGKCLKTL--KGHSNYVFCCNFNP--QSNLIVSGSFDESVRIW 137
Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
           ++           H+  ++ V  + DGSL  S   D    +WD   G+ L TL+ +D   
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--- 194
Query: 239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV 298
               +P  SF                                       V FS + + I+
Sbjct: 195 ----NPPVSF---------------------------------------VKFSPNGKYIL 211
Query: 299 SSSRDKTIKLWN-TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDG 356
           +++ D T+KLW+ +   C  T    + +K                    C+   +S T G
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKY-------------------CIFANFSVTGG 252
Query: 357 QTLFAGYSDNTIRVWQV 373
           + + +G  DN + +W +
Sbjct: 253 KWIVSGSEDNMVYIWNL 269

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 32/236 (13%)
Query: 141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVT 200
           FT+   GH+  VS V+FSPN +   + S+  D+++K+W   + K +   SGH   ++ V 
Sbjct: 20  FTLA--GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTL 259
            S D +L  S   D    +WD++ GK L TL  H++ +    F+P  +     L +S + 
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGSF 130
Query: 260 QKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFT 318
            +S + ++ +  G       +    V +V F+ D   IVSSS D   ++W+T +  C  T
Sbjct: 131 DES-VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           ++D +                   +PP+   + +S +G+ + A   DNT+++W  S
Sbjct: 190 LIDDD-------------------NPPVSF-VKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 132/290 (45%), Gaps = 31/290 (10%)
Query: 32  ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
           I+S  RDNT+ IW     D N    ++ L GH+  +  + L  D    ++GS D T+R+W
Sbjct: 146 IVSGLRDNTIKIW-----DKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVW 198
Query: 92  DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI--VEDGHS 149
           D+  G+       H + VL + F  +N  +V+ S+D++I +W+  +    T+  V  GH 
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 256
Query: 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA 209
             V+ V F   +    IVSA  DR +KVWN + C+     +GH   +  +       L  
Sbjct: 257 AAVNVVDFDDKY----IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV 310
Query: 210 SGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQ-----KIKL-DISRTLQKS 262
           SG  D    LWD+  G  L  L  H +++  + F   R        KIK+ D+   L   
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 263 NLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312
                P     + T      R V  + F  D  QIVSSS D TI +W+ L
Sbjct: 371 A----PAGTLCLRTLVEHSGR-VFRLQF--DEFQIVSSSHDDTILIWDFL 413

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 106/271 (39%), Gaps = 93/271 (34%)
Query: 113 AFSVDNRQIVSSSRDKTIKLW--NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG 170
               D+++IVS  RD TIK+W  NTL  CK  +   GH+  V C+++       +I++  
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTL-ECKRILT--GHTGSVLCLQYDER----VIITGS 190
Query: 171 WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT 230
            D  V+V                                          WD+N G+ L+T
Sbjct: 191 SDSTVRV------------------------------------------WDVNTGEMLNT 208
Query: 231 LVHN-DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL--- 286
           L+H+ + +  L F+ N        D S            I    M +P     R VL   
Sbjct: 209 LIHHCEAVLHLRFN-NGMMVTCSKDRS------------IAVWDMASPTDITLRRVLVGH 255
Query: 287 SVAFSV---DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD 343
             A +V   D++ IVS+S D+TIK+WNT + C+F       K+ +               
Sbjct: 256 RAAVNVVDFDDKYIVSASGDRTIKVWNT-STCEFVRTLNGHKRGI--------------- 299
Query: 344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
              CL        + + +G SDNTIR+W + 
Sbjct: 300 --ACLQYR----DRLVVSGSSDNTIRLWDIE 324

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 62/225 (27%)
Query: 31   TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90
            T++S S D+ + +W     D  +      L+ H   + D  L  D    LS S+D T+++
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVF------LQAHQETVKDFRLLQDSRL-LSWSFDGTVKV 1069
Query: 91   WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD 150
            W++  G+  R F  H   VLS A S D  +  S+S DKT K+W+      F ++      
Sbjct: 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS------FDLL------ 1117
Query: 151  WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS 210
                   SP H+                      LK    GH G +     S DG L A+
Sbjct: 1118 -------SPLHE----------------------LK----GHNGCVRCSAFSLDGILLAT 1144
Query: 211  GGKDMNAMLWDLNDGKHLH----------TLVHNDIITALCFSPN 245
            G  +    +W+++DG+ LH          T  H   +T +CFSP+
Sbjct: 1145 GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1189

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 55/321 (17%)
Query: 36   SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95
            S D  L +W L + +      +  + GH++ ++    S D     S S D TLRLWD+ +
Sbjct: 720  SNDFFLKLWDLNQKEC-----RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774
Query: 96   GKT-----TRRF----EDHTKDVLSV----AFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
                     +RF    ED  +DV  +    ++S D  +I+ ++++K + L++        
Sbjct: 775  ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLA 833
Query: 143  IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTV 201
             +  GH   +    FSP     +I  + +   V++WN+ + +LK+ +  GH  +++ V  
Sbjct: 834  EIHTGHHSTIQYCDFSPYDHLAVIALSQY--CVELWNI-DSRLKVADCRGHLSWVHGVMF 890
Query: 202  SPDGSLCASGGKDMNAMLWDLND---------GKHLHTLVHNDIITALCFSPNRSFQKI- 251
            SPDGS   +   D    +W+             + +  +   +    L     R  Q I 
Sbjct: 891  SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 252  ----KLDISRTLQKSNLILYP----INHGK-------METPFFSLF-------RDVLSVA 289
                ++D     Q S   L P    +  G        +E P   +F       + V  + 
Sbjct: 951  GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010
Query: 290  FSVDNRQIVSSSRDKTIKLWN 310
            F+ D + ++SSS D  I++WN
Sbjct: 1011 FTADGKTLISSSEDSVIQVWN 1031

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 126/328 (38%), Gaps = 63/328 (19%)
Query: 61   KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
            +GH  ++  ++ S DG+  L+ S D+T+R+W+    K  +      K  + V F  +   
Sbjct: 879  RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETM 936
Query: 121  IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-----VSCVRFSPNHQNPIIVSAGWDRMV 175
            +++    + ++L            + G  D+     VSC   SP+ +   +     D  +
Sbjct: 937  VLAVDNIRGLQL---------IAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDEDGAI 985
Query: 176  KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
            K+  L N ++  +  GH   +  +  + DG    S  +D    +W+   G ++    H +
Sbjct: 986  KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045
Query: 236  IITALCFSPNRSFQKIKLDISRTLQKSNLI---------LYPINHGKMETPFFSLFRDVL 286
             +                   R LQ S L+         ++ +  G++E  F      VL
Sbjct: 1046 TVKDF----------------RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1089
Query: 287  SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
            S A S D  +  S+S DKT K+W+          DL        L P       K     
Sbjct: 1090 SCAISSDATKFSSTSADKTAKIWS---------FDL--------LSP---LHELKGHNGC 1129
Query: 347  CLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
                A+S DG  L  G  +  IR+W VS
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNVS 1157

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 12/221 (5%)
Query: 148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL 207
           H+D V    FS + Q   I S G D+ ++V+     +  ++   H   +     S D S 
Sbjct: 614 HTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 208 CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267
            A+   D    +WD   GK +HT   +      C   N+S     L ++       L L+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH---LLLATGSNDFFLKLW 728
Query: 268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM 327
            +N  +     F     V    FS D+  + S S D T++LW+  +  +   ++++   +
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788
Query: 328 VEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI 368
             E  P+ V    K     C S  WS DG  +     +  +
Sbjct: 789 SSEDPPEDVEVIVK-----CCS--WSADGDKIIVAAKNKVL 822

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 94/225 (41%), Gaps = 62/225 (27%)
Query: 31   TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL 90
            T++S S D+ + +W     D  +      L+ H   + D  L  D    LS S+D T+++
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVF------LQAHQETVKDFRLLQDSRL-LSWSFDGTVKV 1076
Query: 91   WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD 150
            W++  G+  R F  H   VLS A S D  +  S+S DKT K+W+      F ++      
Sbjct: 1077 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS------FDLL------ 1124
Query: 151  WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS 210
                   SP H+                      LK    GH G +     S DG L A+
Sbjct: 1125 -------SPLHE----------------------LK----GHNGCVRCSAFSLDGILLAT 1151
Query: 211  GGKDMNAMLWDLNDGKHLH----------TLVHNDIITALCFSPN 245
            G  +    +W+++DG+ LH          T  H   +T +CFSP+
Sbjct: 1152 GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD 1196

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 55/321 (17%)
Query: 36   SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA 95
            S D  L +W L + +      +  + GH++ ++    S D     S S D TLRLWD+ +
Sbjct: 727  SNDFFLKLWDLNQKEC-----RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 781
Query: 96   GKT-----TRRF----EDHTKDVLSV----AFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
                     +RF    ED  +DV  +    ++S D  +I+ ++++K + L++        
Sbjct: 782  ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLA 840
Query: 143  IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTV 201
             +  GH   +    FSP     +I  + +   V++WN+ + +LK+ +  GH  +++ V  
Sbjct: 841  EIHTGHHSTIQYCDFSPYDHLAVIALSQY--CVELWNI-DSRLKVADCRGHLSWVHGVMF 897
Query: 202  SPDGSLCASGGKDMNAMLWDLND---------GKHLHTLVHNDIITALCFSPNRSFQKI- 251
            SPDGS   +   D    +W+             + +  +   +    L     R  Q I 
Sbjct: 898  SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 252  ----KLDISRTLQKSNLILYP----INHGK-------METPFFSLF-------RDVLSVA 289
                ++D     Q S   L P    +  G        +E P   +F       + V  + 
Sbjct: 958  GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1017
Query: 290  FSVDNRQIVSSSRDKTIKLWN 310
            F+ D + ++SSS D  I++WN
Sbjct: 1018 FTADGKTLISSSEDSVIQVWN 1038

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 126/328 (38%), Gaps = 63/328 (19%)
Query: 61   KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
            +GH  ++  ++ S DG+  L+ S D+T+R+W+    K  +      K  + V F  +   
Sbjct: 886  RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE--TKKVCKNSAIVLKQEIDVVFQENETM 943
Query: 121  IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-----VSCVRFSPNHQNPIIVSAGWDRMV 175
            +++    + ++L            + G  D+     VSC   SP+ +   +     D  +
Sbjct: 944  VLAVDNIRGLQL---------IAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDEDGAI 992
Query: 176  KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
            K+  L N ++  +  GH   +  +  + DG    S  +D    +W+   G ++    H +
Sbjct: 993  KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1052
Query: 236  IITALCFSPNRSFQKIKLDISRTLQKSNLI---------LYPINHGKMETPFFSLFRDVL 286
             +                   R LQ S L+         ++ +  G++E  F      VL
Sbjct: 1053 TVKDF----------------RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1096
Query: 287  SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
            S A S D  +  S+S DKT K+W+          DL        L P       K     
Sbjct: 1097 SCAISSDATKFSSTSADKTAKIWS---------FDL--------LSP---LHELKGHNGC 1136
Query: 347  CLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
                A+S DG  L  G  +  IR+W VS
Sbjct: 1137 VRCSAFSLDGILLATGDDNGEIRIWNVS 1164

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 12/221 (5%)
Query: 148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL 207
           H+D V    FS + Q   I S G D+ ++V+     +  ++   H   +     S D S 
Sbjct: 621 HTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 208 CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY 267
            A+   D    +WD   GK +HT   +      C   N+S     L ++       L L+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH---LLLATGSNDFFLKLW 735
Query: 268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM 327
            +N  +     F     V    FS D+  + S S D T++LW+  +  +   ++++   +
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 328 VEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI 368
             E  P+ V    K     C S  WS DG  +     +  +
Sbjct: 796 SSEDPPEDVEVIVK-----CCS--WSADGDKIIVAAKNKVL 829

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 49/254 (19%)
Query: 66  FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
           +I  +  S DG +  +G+ D+ +R+WD+   K     + H +D+ S+ +     ++VS S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 126 RDKTIKLWN-TLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183
            D+T+++W+     C  T+ +EDG    V+ V  SP      I +   DR V+VW+    
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDG----VTTVAVSPG-DGKYIAAGSLDRAVRVWDSETG 239
Query: 184 KL-------KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI 236
            L         + +GH   + +V  + DG    SG  D +  LW+L +            
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN---------- 289
Query: 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ 296
                   N+S  K                   N G  E  +      VLSVA + ++  
Sbjct: 290 --------NKSDSKTP-----------------NSGTCEVTYIGHKDFVLSVATTQNDEY 324
Query: 297 IVSSSRDKTIKLWN 310
           I+S S+D+ +  W+
Sbjct: 325 ILSGSKDRGVLFWD 338

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6   LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
           ++ R TL GH   +  +   T+ +    +LS S+D  LIIW     +  + +P +     
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRL---LLSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64  SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
           S ++     +  GNY   G  D    +++L       + +R    HT   LS    +D+ 
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
           QIV+SS D T  LW+ +   + T    GH+  V  +  +P+ +  + VS   D   K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
           +     +   +GH   +N +   P+G+  A+G  D    L+DL   + L T  H++II  
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
            C   + SF K    +       N  ++                 V  +  + D   + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
            S D  +K+WN
Sbjct: 330 GSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97  KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
           +T R    H   + ++ +  D+R ++S+S+D  + +W++    K   +    S WV    
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           ++P+     +   G D +  ++NL     N ++    +GHTGYL+      D  +  S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
            D    LWD+  G+   T   H   + +L  +P+ R F     D S  L       + + 
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
            G     F     D+ ++ F  +     + S D T +L+                    +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
           LR D    +   D  +C   S+++S  G+ L AGY D    VW      R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6   LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
           ++ R TL GH   +  +   T+ +    +LS S+D  LIIW     +  + +P +     
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRL---LLSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64  SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
           S ++     +  GNY   G  D    +++L       + +R    HT   LS    +D+ 
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
           QIV+SS D T  LW+ +   + T    GH+  V  +  +P+ +  + VS   D   K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
           +     +   +GH   +N +   P+G+  A+G  D    L+DL   + L T  H++II  
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
            C   + SF K    +       N  ++                 V  +  + D   + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
            S D  +K+WN
Sbjct: 330 GSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97  KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
           +T R    H   + ++ +  D+R ++S+S+D  + +W++    K   +    S WV    
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           ++P+     +   G D +  ++NL     N ++    +GHTGYL+      D  +  S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
            D    LWD+  G+   T   H   + +L  +P+ R F     D S  L       + + 
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
            G     F     D+ ++ F  +     + S D T +L+                    +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
           LR D    +   D  +C   S+++S  G+ L AGY D    VW      R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 40/307 (13%)
Query: 12  LNGHNGWVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
           L GH+     + T  +F  + I+S S DNTL +W         G   + L GH+  +   
Sbjct: 114 LKGHD---DHVITCLQFCGNRIVSGSDDNTLKVWSAV-----TGKCLRTLVGHTGGVWSS 165
Query: 71  VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI 130
            +    N  +SGS D+TL++W+   G+       HT  V      +  +++VS SRD T+
Sbjct: 166 QMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR--CMHLHEKRVVSGSRDATL 221
Query: 131 KLWN-TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH 189
           ++W+     C   ++  GH   V CV++        +VS  +D MVKVW+          
Sbjct: 222 RVWDIETGQCLHVLM--GHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTL 275
Query: 190 SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN--- 245
            GHT  + ++    DG    SG  D +  +WD+  G  +HTL  H  + + +    N   
Sbjct: 276 QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV 333
Query: 246 --RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD 303
              +   +K+   +T Q    +  P  H    T                +   +++SS D
Sbjct: 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT------------CLQFNKNFVITSSDD 381
Query: 304 KTIKLWN 310
            T+KLW+
Sbjct: 382 GTVKLWD 388

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 49/288 (17%)
Query: 91  WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL-AHCKFTIVEDGHS 149
           W     K+ +  + H   V++      NR IVS S D T+K+W+ +   C  T+V  GH+
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLV--GHT 159
Query: 150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA 209
             V    +S   ++ II+S   DR +KVWN    +      GHT  +  + +        
Sbjct: 160 GGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 213
Query: 210 SGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPI 269
           SG +D    +WD+  G+ LH L+   +    C         ++ D  R +  +   +  +
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLM-GHVAAVRC---------VQYDGRRVVSGAYDFMVKV 263
Query: 270 NHGKMETPFFSL---FRDVLSVAFSVDNRQIVSSSRDKTIKLWNT-LAHCKFTIVDLETK 325
              + ET   +L      V S+ F  D   +VS S D +I++W+    +C  T+   ++ 
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
               EL+ ++                       L +G +D+T+++W +
Sbjct: 322 TSGMELKDNI-----------------------LVSGNADSTVKIWDI 346

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 18/241 (7%)
Query: 6   LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
           ++ R TL GH   +  +   T+ +    ++S S+D  LIIW     +  + +P +     
Sbjct: 56  MRTRRTLRGHLAKIYAMHWGTDSRL---LVSASQDGKLIIWDSYTTNKVHAIPLR----- 107
Query: 64  SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
           S ++     +  GNY   G  D    +++L       + +R    HT   LS    +D+ 
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 166
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
           QIV+SS D T  LW+ +   + T    GH+  V  +  +P+ +  + VS   D   K+W+
Sbjct: 167 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 223
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
           +     +   +GH   +N +   P+G+  A+G  D    L+DL   + L T  H++II  
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 283
Query: 240 L 240
           +
Sbjct: 284 I 284

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97  KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
           +T R    H   + ++ +  D+R +VS+S+D  + +W++    K   +    S WV    
Sbjct: 57  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 115
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           ++P+     +   G D +  ++NL     N ++    +GHTGYL+      D  +  S G
Sbjct: 116 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
            D    LWD+  G+   T   H   + +L  +P+ R F     D S  L       + + 
Sbjct: 174 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 225
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
            G     F     D+ ++ F  +     + S D T +L+                    +
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 265
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
           LR D    +   D  +C   S+++S  G+ L AGY D    VW      R G
Sbjct: 266 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 317

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6   LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
           ++ R TL GH   +  +   T+ +    ++S S+D  LIIW     +  + +P +     
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRL---LVSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64  SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
           S ++     +  GNY   G  D    +++L       + +R    HT   LS    +D+ 
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
           QIV+SS D T  LW+ +   + T    GH+  V  +  +P+ +  + VS   D   K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
           +     +   +GH   +N +   P+G+  A+G  D    L+DL   + L T  H++II  
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
            C   + SF K    +       N  ++                 V  +  + D   + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
            S D  +K+WN
Sbjct: 330 GSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97  KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
           +T R    H   + ++ +  D+R +VS+S+D  + +W++    K   +    S WV    
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           ++P+     +   G D +  ++NL     N ++    +GHTGYL+      D  +  S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
            D    LWD+  G+   T   H   + +L  +P+ R F     D S  L       + + 
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
            G     F     D+ ++ F  +     + S D T +L+                    +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
           LR D    +   D  +C   S+++S  G+ L AGY D    VW      R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 131/311 (42%), Gaps = 21/311 (6%)
Query: 6   LQLRGTLNGHNGWVTQI--ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
           ++ R TL GH   +  +   T+ +    ++S S+D  LIIW     +  + +P +     
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRL---LVSASQDGKLIIWDSYTTNKVHAIPLR----- 96
Query: 64  SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNR 119
           S ++     +  GNY   G  D    +++L       + +R    HT   LS    +D+ 
Sbjct: 97  SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG-YLSCCRFLDDN 155
Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
           QIV+SS D T  LW+ +   + T    GH+  V  +  +P+ +  + VS   D   K+W+
Sbjct: 156 QIVTSSGDTTCALWD-IETGQQTTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWD 212
Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA 239
           +     +   +GH   +N +   P+G+  A+G  D    L+DL   + L T  H++II  
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII-- 270
Query: 240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS 299
            C   + SF K    +       N  ++                 V  +  + D   + +
Sbjct: 271 -CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 300 SSRDKTIKLWN 310
            S D  +K+WN
Sbjct: 330 GSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 39/292 (13%)
Query: 97  KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
           +T R    H   + ++ +  D+R +VS+S+D  + +W++    K   +    S WV    
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCA 104
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLT----NCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           ++P+     +   G D +  ++NL     N ++    +GHTGYL+      D  +  S G
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 213 KDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPIN 270
            D    LWD+  G+   T   H   + +L  +P+ R F     D S  L       + + 
Sbjct: 163 -DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL-------WDVR 214
Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
            G     F     D+ ++ F  +     + S D T +L+                    +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF--------------------D 254
Query: 331 LRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYSDNTIRVWQVSVTSRGG 380
           LR D    +   D  +C   S+++S  G+ L AGY D    VW      R G
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 28/244 (11%)
Query: 11  TLNGHNGWVTQI-ATNPKFPDTILSCSRDNTLIIWKLTRDDTN------------YGVPQ 57
              GHN  V  +     K    I++ SRDNTL +WKL ++ +             +  P+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 58  KR------LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS 111
           +       L+GH   +  +  S  GN  +SGS+D TL +WD+A  K       HT  + S
Sbjct: 258 ENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYS 315
Query: 112 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171
             +  + ++ +S+S D TI++W+ L + +      GH+  V  +R S    +  +VSA  
Sbjct: 316 TIYDHERKRCISASXDTTIRIWD-LENGELXYTLQGHTALVGLLRLS----DKFLVSAAA 370
Query: 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
           D  ++ W+  +   K ++  HT      T     ++  SG ++    +++L  GK +H  
Sbjct: 371 DGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHAN 428
Query: 232 VHND 235
           +  D
Sbjct: 429 ILKD 432

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 28/244 (11%)
Query: 11  TLNGHNGWVTQI-ATNPKFPDTILSCSRDNTLIIWKLTRDDTN------------YGVPQ 57
              GHN  V  +     K    I++ SRDNTL +WKL ++ +             +  P+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 58  KR------LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS 111
           +       L+GH   +  +  S  GN  +SGS+D TL +WD+A  K       HT  + S
Sbjct: 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS 315
Query: 112 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171
             +  + ++ +S+S D TI++W+ L + +      GH+  V  +R S    +  +VSA  
Sbjct: 316 TIYDHERKRCISASMDTTIRIWD-LENGELMYTLQGHTALVGLLRLS----DKFLVSAAA 370
Query: 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
           D  ++ W+  +   K ++  HT      T     ++  SG ++    +++L  GK +H  
Sbjct: 371 DGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHAN 428
Query: 232 VHND 235
           +  D
Sbjct: 429 ILKD 432

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L  T  GH  +V  +A NPK P T  S   D T+ +W L +   N+ +   + +G ++  
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV- 190
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
            D     D  Y ++ S D T+++WD          E H  +V    F      I+S S D
Sbjct: 191 -DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 128 KTIKLWNTLAHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
            T+K+WN+  +     +  G    W  C+   P  +   I S G+D    V +L N +  
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIAS-GFDNGFTVLSLGNDE-- 304
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR 246
                      T+++ P G L  SGGK+  A                +DI TA+     R
Sbjct: 305 ----------PTLSLDPVGKLVWSGGKNAAA----------------SDIFTAVI----R 334
Query: 247 SFQKIKLDISRTLQKSNL 264
             ++++ D   +LQ   L
Sbjct: 335 GNEEVEQDEPLSLQTKEL 352

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
           N+ + GS D  +R+++   G+    FE H   + S+A       ++S S D T+KLWN  
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
            +       +GH  +V CV F+P  ++P   ++G  DR VKVW+L     N  L      
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
              Y++   + PD     +   D+   +WD      + TL                    
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
                               G M    F++F   L +        I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159
           + F + +  V  + F      ++++     ++LWN     +   ++   +  V   +F  
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
             +N IIV +  D  ++V+N    +  ++   H  Y+ ++ V P      SG  D+   L
Sbjct: 66  -RKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 220 WDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
           W+  +   L      H   +  + F+P          + RT++  +L           TP
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------GQSTP 175
Query: 278 FFSLF----RDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331
            F+L     R V  V +    D   ++++S D TIK+W           D +TK  V  L
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----------DYQTKSCVATL 224
Query: 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
              + + S     P             + +G  D T+++W  S
Sbjct: 225 EGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSS 258

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 38/258 (14%)
Query: 8   LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           L  T  GH  +V  +A NPK P T  S   D T+ +W L +   N+ +   + +G ++  
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV- 190
Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD 127
            D     D  Y ++ S D T+++WD          E H  +V    F      I+S S D
Sbjct: 191 -DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 128 KTIKLWNTLAHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
            T+K+WN+  +     +  G    W  C+   P  +   I S G+D    V +L N +  
Sbjct: 250 GTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIAS-GFDNGFTVLSLGNDE-- 304
Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR 246
                      T+++ P G L  SGGK+  A                +DI TA+     R
Sbjct: 305 ----------PTLSLDPVGKLVWSGGKNAAA----------------SDIFTAVI----R 334
Query: 247 SFQKIKLDISRTLQKSNL 264
             ++++ D   +LQ   L
Sbjct: 335 GNEEVEQDEPLSLQTKEL 352

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
           N+ + GS D  +R+++   G+    FE H   + S+A       ++S S D T+KLWN  
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
            +       +GH  +V CV F+P  ++P   ++G  DR VKVW+L     N  L      
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
              Y++   + PD     +   D+   +WD      + TL                    
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
                               G M    F++F   L +        I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 119/289 (41%), Gaps = 32/289 (11%)
Query: 97  KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR 156
           KT R  + H   VL + +  D R+IVSSS+D  + +W++    K   V      WV    
Sbjct: 55  KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACA 113
Query: 157 FSPNHQNPIIVSAGWDRMVKVWNLTNCK------LKINHSGHTGYLNTVTVSPDGSLCAS 210
           ++P+     I   G D    V+ LT  K       K + + HT YL+  + +       +
Sbjct: 114 YAPS--GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT 171
Query: 211 GGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPI 269
              D    LWD+  G+ L +   H   +  L  +P+ +       +S    K  ++ + +
Sbjct: 172 ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF---VSGGCDKKAMV-WDM 227
Query: 270 NHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVE 329
             G+    F +   DV SV +        S S D T +L++  A  +  I   E+     
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES----- 282
Query: 330 ELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR 378
                ++  ++  D        +S  G+ LFAGY+D TI VW V   SR
Sbjct: 283 -----IIFGASSVD--------FSLSGRLLFAGYNDYTINVWDVLKGSR 318

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIV 71
           L GH G+ +     P     +++ S D T ++W +T          +   GH+  +  + 
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 72  LSS-DGNYALSGSWDKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT 129
           ++S + N  +SGS D T+RLWDL    +  R +  H  D+ SV F  D ++  + S D T
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 130 IKLWNTLAHCKFTIV------EDGHSDWVSCVRFSPNHQNPIIVSAGWDRM-VKVWNLTN 182
            +L++     +  +        D     V+ V FS + +   ++ AG+      VW+   
Sbjct: 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR---LLFAGYSNGDCYVWDTLL 329
Query: 183 CKLKIN----HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220
            ++ +N     + H G ++ + +S DGS   +G  D N  +W
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 140/341 (41%), Gaps = 56/341 (16%)
Query: 11  TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIW-KLTRDDTNYGVPQKRLKGHSHFISD 69
           TL GH+G V  +   P+  + I+S S+D  LI+W  LT   T+       +K H  ++ +
Sbjct: 61  TLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTH------AIKLHCPWVME 113
Query: 70  IVLSSDGNYALSGSWDKTLRLWDLAAGK-------TTRRFEDHTKDVLSVAFSVDNR-QI 121
              + +G     G  D    +++L++          +R    H     S  +  D   ++
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 122 VSSSRDKTIKLWNTLAHCKFTIV----EDGHSDWVSCVRFSPNHQNP-IIVSAGWDRMVK 176
           ++ S D+T  LW+     + +I       GH+  V  +  S N  N  + +S   D  V+
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV--LSLSINSLNANMFISGSCDTTVR 231
Query: 177 VWNL--TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN 234
           +W+L  T+  ++  H GH G +N+V   PDG    +G  D    L+D+  G  L   V+N
Sbjct: 232 LWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ--VYN 288
Query: 235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYP------------------INHGKMET 276
                    P+R+  ++ +  S     S  +L+                   +N G ++ 
Sbjct: 289 R-------EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Query: 277 PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 317
              S    +  +  S D   + + S DK +K+W    H K 
Sbjct: 342 ---SHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKI 379

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 46/339 (13%)
Query: 58  KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD 117
           + L+GHS  +  +  + + N+ +S S D  L +W+    + T   + H   V+  AF+ +
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 118 NRQIVSSSRDKTIKLWNTLAHC------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW 171
            + +     D    ++N  +          + V  GH  + S  ++ P+ +  +I  +G 
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG- 178
Query: 172 DRMVKVWNLTNCKLKIN------HSGHTGYLNTVTV-SPDGSLCASGGKDMNAMLWDLND 224
           D+   +W++T  + +I+       SGHT  + ++++ S + ++  SG  D    LWDL  
Sbjct: 179 DQTCVLWDVTTGQ-RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 225 GKHLHTLVH---NDIITALCFSPNRSF------QKIKLDISRTLQKSNLILYPINHGKME 275
                   H    DI +   F   + F         +L   RT  +  +     +    E
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297
Query: 276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDV 335
            P       V SVAFS+  R + +   +    +W+TL      +++L T +   E R   
Sbjct: 298 LPI------VTSVAFSISGRLLFAGYSNGDCYVWDTLL--AEMVLNLGTLQNSHEGRIS- 348
Query: 336 VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
                      CL L  S+DG  L  G  D  +++W  S
Sbjct: 349 -----------CLGL--SSDGSALCTGSWDKNLKIWAFS 374

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
           N+ + GS D  +R+++   G+    FE H   + S+A       ++S S D T+KLWN  
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
            +       +GH  +V CV F+P  ++P   ++G  DR VKVW+L     N  L      
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
              Y++   + PD     +   D+   +WD      + TL                    
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
                               G M    F++F   L +        I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159
           + F + +  V  + F      ++++     ++LWN     +   ++   +  V   +F  
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
             +N IIV +  D  ++V+N    +  ++   H  Y+ ++ V P      SG  D+   L
Sbjct: 66  -RKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 220 WDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
           W+  +   L      H   +  + F+P          + RT++  +L           TP
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------GQSTP 175
Query: 278 FFSLF----RDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331
            F+L     R V  V +    D   ++++S D TIK+W           D +TK  V  L
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----------DYQTKSCVATL 224
Query: 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
              + + S     P             + +G  D T+++W  S
Sbjct: 225 EGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSS 258

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 55/240 (22%)
Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
           N+ + GS D  +R+++   G+    FE H   + S+A       ++S S D T+KLWN  
Sbjct: 68  NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL----TNCKLKINHSG 191
            +       +GH  +V CV F+P  ++P   ++G  DR VKVW+L     N  L      
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNP--KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI 251
              Y++   + PD     +   D+   +WD      + TL                    
Sbjct: 186 GVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL-------------------- 224
Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
                               G M    F++F   L +        I+S S D T+K+WN+
Sbjct: 225 -------------------EGHMSNVSFAVFHPTLPI--------IISGSEDGTLKIWNS 257

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 108/283 (38%), Gaps = 39/283 (13%)
Query: 100 RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP 159
           + F + +  V  + F      ++++     ++LWN     +   ++   +  V   +F  
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
             +N IIV +  D  ++V+N    +  ++   H  Y+ ++ V P      SG  D+   L
Sbjct: 66  -RKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 220 WDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
           W+  +   L      H   +  + F+P          + RT++  +L           TP
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--------GQSTP 175
Query: 278 FFSLF----RDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL 331
            F+L     R V  V +    D   ++++S D TIK+W           D +TK  V  L
Sbjct: 176 NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW-----------DYQTKSCVATL 224
Query: 332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
              + + S     P             + +G  D T+++W  S
Sbjct: 225 EGHMSNVSFAVFHPTL---------PIIISGSEDGTLKIWNSS 258

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Query: 32  ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
           +L+ + DN++ +W  +  D    +   +++    +IS +    +GNY   G+    ++LW
Sbjct: 38  VLAVALDNSVYLWSASSGDI---LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 92  DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDGHSD 150
           D+   K  R    H+  V S+++   N  I+SS SR   I   +            GHS 
Sbjct: 95  DVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGYLNTVTVSP-DG 205
            V  +R++P+ ++  + S G D +V VW     +         + H G +  V   P   
Sbjct: 152 EVCGLRWAPDGRH--LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 206 SLCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN 263
           ++ A+GG   D +  +W++  G  L  +  +  + ++ +SP+      +L       ++ 
Sbjct: 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQ 265
Query: 264 LILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309
           L+++                 VLS+  S D   + S++ D+T++LW
Sbjct: 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 54  GVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA 113
           G  +  L     FI  I  S DG Y  SG+ D  + ++D+A GK     E H   + S+ 
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 114 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN 160
           FS D++ +V++S D  IK+++ + H        GH+ WV  V F P+
Sbjct: 214 FSPDSQLLVTASDDGYIKIYD-VQHANLAGTLSGHASWVLNVAFCPD 259

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 125/295 (42%), Gaps = 14/295 (4%)
Query: 18  WVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG 76
           W     TN K   +T+++ S D+ + +WK   +  +    Q  L+GH   +  + +S   
Sbjct: 36  WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL---QWSLEGHQLGVVSVDISHTL 92
Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 136
             A S S D  +RLWDL  GK  +  +    D  ++AFS D++ + + +    + ++  +
Sbjct: 93  PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG-V 151
Query: 137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL 196
              K     D    ++  + +SP+     + S   D ++ ++++   KL     GH   +
Sbjct: 152 ESGKKEYSLDTRGKFILSIAYSPD--GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209
Query: 197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDI 255
            ++T SPD  L  +   D    ++D+       TL  H   +  + F P+ +        
Sbjct: 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH------F 263
Query: 256 SRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310
             +    ++ ++ +        FF     V  V ++ +  +IVS   D+ I +++
Sbjct: 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Query: 32  ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
           +L+ + DN++ +W  +  D    +   +++    +IS +    +GNY   G+    ++LW
Sbjct: 129 VLAVALDNSVYLWSASSGDI---LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 92  DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDGHSD 150
           D+   K  R    H+  V S+++   N  I+SS SR   I   +            GHS 
Sbjct: 186 DVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGYLNTVTVSP-DG 205
            V  +R++P+ ++  + S G D +V VW     +         + H G +  V   P   
Sbjct: 243 EVCGLRWAPDGRH--LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 206 SLCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN 263
           ++ A+GG   D +  +W++  G  L  +  +  + ++ +SP+      +L       ++ 
Sbjct: 301 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQ 356
Query: 264 LILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309
           L+++                 VLS+  S D   + S++ D+T++LW
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 20/286 (6%)
Query: 32  ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
           +L+ + DN++ +W  +  D    +   +++    +IS +    +GNY   G+    ++LW
Sbjct: 118 VLAVALDNSVYLWSASSGDI---LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 92  DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDGHSD 150
           D+   K  R    H+  V S+++   N  I+SS SR   I   +            GHS 
Sbjct: 175 DVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGHTGYLNTVTVSP-DG 205
            V  +R++P+ ++  + S G D +V VW     +         + H G +  V   P   
Sbjct: 232 EVCGLRWAPDGRH--LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 206 SLCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSN 263
           ++ A+GG   D +  +W++  G  L  +  +  + ++ +SP+      +L       ++ 
Sbjct: 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQ 345
Query: 264 LILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309
           L+++                 VLS+  S D   + S++ D+T++LW
Sbjct: 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
           L GH      ++ NP     +LS S D+T+ +W +      + V   +    GH+  + D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 70  IVLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSS 124
           +      + +L GS   D+ L +WD     T++     + HT +V  ++F+  +  I+++
Sbjct: 237 VAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 125 -SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
            S DKT+ LW+ L + K  +   + H D +  V++SP H   I+ S+G DR + VW+L+ 
Sbjct: 296 GSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSK 353
Query: 183 C--------------KLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDL 222
                          +L   H GHT  ++  + +P+   +  S  +D    +W +
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
           L GH      ++ NP     +LS S D+T+ +W +      + V   +    GH+  + D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 70  IVLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSS 124
           +      + +L GS   D+ L +WD     T++     + HT +V  ++F+  +  I+++
Sbjct: 239 VAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 125 -SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
            S DKT+ LW+ L + K  +   + H D +  V++SP H   I+ S+G DR + VW+L+ 
Sbjct: 298 GSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSK 355
Query: 183 C--------------KLKINHSGHTGYLNTVTVSPD 204
                          +L   H GHT  ++  + +P+
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 391

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
           L GH      ++ NP     +LS S D+T+ +W +      + V   +    GH+  + D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 70  IVLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSS 124
           +      + +L GS   D+ L +WD     T++     + HT +V  ++F+  +  I+++
Sbjct: 241 VAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 125 -SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
            S DKT+ LW+ L + K  +   + H D +  V++SP H   I+ S+G DR + VW+L+ 
Sbjct: 300 GSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWDLSK 357
Query: 183 C--------------KLKINHSGHTGYLNTVTVSPD 204
                          +L   H GHT  ++  + +P+
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 393

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%), Gaps = 32/219 (14%)
Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR--LKGHSHFISD 69
           L GH      ++ NP     +LS S D+T+ +W ++       V   +    GH+  + D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 70  I---VLSSDGNYALSGSW--DKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQI 121
           +   +L    + +L GS   D+ L +WD  +  T++     + HT +V  ++F+  +  I
Sbjct: 233 VSWHLL----HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 288
Query: 122 VSS-SRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
           +++ S DKT+ LW+ L + K  +   + H D +  V++SP H   I+ S+G DR + VW+
Sbjct: 289 LATGSADKTVALWD-LRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLNVWD 346
Query: 180 LTNC--------------KLKINHSGHTGYLNTVTVSPD 204
           L+                +L   H GHT  ++  + +P+
Sbjct: 347 LSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 9/175 (5%)
Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L+GHS  +  +   SDG    SG  D  +++WD  +        +H   V +VA+     
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 120 QIVSS---SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW-DRMV 175
            ++++   + DK I  WN     +   V+ G    V+ + +SP H   I+ + G+ D  +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSP-HSKEIMSTHGFPDNNL 329
Query: 176 KVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL 228
            +W+ ++  L  +++   H   +    +SPDG + ++   D N   W + DG H+
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 110/278 (39%), Gaps = 25/278 (8%)
Query: 43  IWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF 102
           +W ++       V Q       ++I    L  DG   + G    TL +WDLAA     + 
Sbjct: 76  VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Query: 103 E--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN 160
           E         ++A S D++   S   D  I +W+ L +        GH+D  SC+  S +
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD-LHNQTLVRQFQGHTDGASCIDISND 194
Query: 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW 220
                + + G D  V+ W+L   + ++     T  + ++   P G   A G +  N  + 
Sbjct: 195 GTK--LWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 221 DLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF-F 279
            +N        +H   + +L F+    +         +  K NL+          TP+  
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKW-------FVSTGKDNLL------NAWRTPYGA 298
Query: 280 SLFR-----DVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312
           S+F+      VLS   SVD++ IV+ S DK   ++  +
Sbjct: 299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-------KGHS 64
           L GH      ++ N      +LS S D+T+ +W     D N G  + ++        GHS
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLW-----DINAGPKEGKIVDAKAIFTGHS 229
Query: 65  HFISDIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDNR 119
             + D+      + +L GS   D+ L +WD  +  T++     + HT +V  ++F+  + 
Sbjct: 230 AVVEDVAWHL-LHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 120 QIVSS-SRDKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
            I+++ S DKT+ LW+ L + K  +   + H D +  V +SP H   I+ S+G DR + V
Sbjct: 289 FILATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSP-HNETILASSGTDRRLNV 346
Query: 178 WNLTNC--------------KLKINHSGHTGYLNTVTVSPD 204
           W+L+                +L   H GHT  ++  + +P+
Sbjct: 347 WDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPN 387

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-------KGHS 64
           L GH      ++ N      +LS S D+T+ +W     D N G  + ++        GHS
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLW-----DINAGPKEGKIVDAKAIFTGHS 229
Query: 65  HFISDIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDNR 119
             + D+      + +L GS   D+ L +WD  +  T++     + HT +V  ++F+  + 
Sbjct: 230 AVVEDVAWHL-LHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 120 QIVSS-SRDKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
            I+++ S DKT+ LW+ L + K  +   + H D +  V +SP H   I+ S+G DR + V
Sbjct: 289 FILATGSADKTVALWD-LRNLKLKLHTFESHKDEIFQVHWSP-HNETILASSGTDRRLNV 346
Query: 178 WNLTNC--------------KLKINHSGHTGYLNTVTVSPD 204
           W+L+                +L   H GHT  ++  + +P+
Sbjct: 347 WDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPN 387

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 26  PKFPDTIL-SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW 84
           P  P   L + S  N +  W++   D+   +P K  + H+  + D+  S DG+   + S 
Sbjct: 50  PTLPGNFLIAGSWANDVRCWEV--QDSGQTIP-KAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 85  DKTLRLWDLAAGKTTRRFEDHTKDVLSVAF--SVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
           DKT ++WDL++ +   +   H   V ++ +  + +   +++ S DKT+K W+T +     
Sbjct: 107 DKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM 165
Query: 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN 182
           +++     + + V +      P+ V A  +R + V+ L N
Sbjct: 166 VLQLPERCYCADVIY------PMAVVATAERGLIVYQLEN 199

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 80  LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 139
           +SGS D T+ +++    K    F +HTK V SV ++ D     S+  D TI L+N +   
Sbjct: 164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223
Query: 140 KFTIVED------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
           K  + ED       HS  V  + +SP+     I SA  D+ +K+WN+   K++
Sbjct: 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTK--IASASADKTIKIWNVATLKVE 274

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 132/345 (38%), Gaps = 81/345 (23%)
Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA-----GKTTRRFEDHTKDVLSVAFSVD 117
           HSH  +    S  G Y  SG     +R+WD          T   F    KD+   ++  +
Sbjct: 58  HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI---SWDSE 114
Query: 118 NRQI--VSSSRDKT--IKLWNT-LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD 172
           +++I  V   R++   + L++T  ++   T    G +  ++ V F P+    II S   D
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLT----GQARAMNSVDFKPSRPFRII-SGSDD 169
Query: 173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232
             V ++     K K     HT ++++V  +PDGSL AS G D   +L++  DG    T V
Sbjct: 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGV 227
Query: 233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292
             D                  D  + +  S                      V  + +S 
Sbjct: 228 FED------------------DSLKNVAHSG--------------------SVFGLTWSP 249
Query: 293 DNRQIVSSSRDKTIKLWNT---------------------LAHCKFTIVDLETKKMVEEL 331
           D  +I S+S DKTIK+WN                      +   K  +V +     +  +
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309
Query: 332 RPDV--VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
            P++  + Q          +L+ S DG+TLF+  ++  I  W +S
Sbjct: 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 17/208 (8%)
Query: 22  IATNPKFPDTIL-SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL 80
           +A NP    T+L SC  D  + IW    D  ++       +GH   +  +  S  GNY  
Sbjct: 22  LAWNPA--GTLLASCGGDRRIRIWGTEGD--SWICKSVLSEGHQRTVRKVAWSPCGNYLA 77
Query: 81  SGSWDKTLRLWDLAAG--KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 138
           S S+D T  +W       +     E H  +V SVA++     + + SRDK++ +W     
Sbjct: 78  SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137
Query: 139 CKFTIVE--DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN----CKLKINHSGH 192
            ++  V   + H+  V  V + P+ +  ++ SA +D  VK++        C   +   GH
Sbjct: 138 DEYECVSVLNSHTQDVKHVVWHPSQE--LLASASYDDTVKLYREEEDDWVCCATLE--GH 193
Query: 193 TGYLNTVTVSPDGSLCASGGKDMNAMLW 220
              + ++   P G   AS   D    +W
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 121 IVSSSRDKTIKLWNTLAH---CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV 177
           + S   D+ I++W T      CK +++ +GH   V  V +SP      + SA +D    +
Sbjct: 31  LASCGGDRRIRIWGTEGDSWICK-SVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87
Query: 178 W--NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL---- 231
           W  N  + +      GH   + +V  +P G+L A+  +D +  +W++++      +    
Sbjct: 88  WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN 147
Query: 232 VHNDIITALCFSPNRS-FQKIKLDISRTL---QKSNLILYPINHGKMETPFFSLFRDVLS 287
            H   +  + + P++        D +  L   ++ + +      G   T        V S
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--------VWS 199
Query: 288 VAFSVDNRQIVSSSRDKTIKLW 309
           +AF    +++ S S D+T+++W
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIW 221

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 51/173 (29%)
Query: 56  PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK---DVLSV 112
           P   L GH   +    LS      +SGSWDKT ++W    G      + H     D   V
Sbjct: 96  PLYTLIGHQGNVCS--LSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVV 151
Query: 113 AFSVDNRQIVSSSRDKTIKLWNTLAHCK------------FTIVED-------------- 146
           +FS    + +++S DKTIKLW      K              +V+D              
Sbjct: 152 SFS--ENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKL 209
Query: 147 -------------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
                        GH  +V C++  PN     IVS G DR V++W+  N  LK
Sbjct: 210 VDXHTGDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSKENGSLK 259

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 4   ETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           ET +L  TL GH G V ++   +PKF   + SCS D  ++IWK    + N    Q  +  
Sbjct: 41  ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK----EENGRWSQIAVHA 96
Query: 63  -HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSV- 116
            HS  ++ +  +    G   L  S D  + + +     TT     + H   V S +++  
Sbjct: 97  VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156
Query: 117 ------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPN- 160
                       ++R+ V+   D  +K+W   +  +  ++E   +GHSDWV  V +SP  
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 161 HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM 215
                + S   DR   +W   N      K  +        L   + S  G++ A  G D 
Sbjct: 217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
Query: 216 NAMLWDLN-DGK 226
              LW  N +GK
Sbjct: 277 KVTLWKENLEGK 288

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 4   ETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           ET +L  TL GH G V ++   +PKF   + SCS D  ++IWK    + N    Q  +  
Sbjct: 43  ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK----EENGRWSQIAVHA 98
Query: 63  -HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSV- 116
            HS  ++ +  +    G   L  S D  + + +     TT     + H   V S +++  
Sbjct: 99  VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158
Query: 117 ------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPN- 160
                       ++R+ V+   D  +K+W   +  +  ++E   +GHSDWV  V +SP  
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 218
Query: 161 HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM 215
                + S   DR   +W   N      K  +        L   + S  G++ A  G D 
Sbjct: 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278
Query: 216 NAMLWDLN-DGK 226
              LW  N +GK
Sbjct: 279 KVTLWKENLEGK 290

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 36/255 (14%)
Query: 81  SGSWDKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH 138
           S S+DKTL++WD    +T     FE+          S  +  +   +R   ++L + L  
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD-LKS 175
Query: 139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL---TNCKLKIN-HSG--- 191
              + +  GH   +  V +SP + + I+ +A  D  VK+W++   + C + ++ H+G   
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRY-DYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 192 ---------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF 242
                    H G +N +  + DG    + G D    LW+ ++G+  +TLV+   +     
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--NTLVNYGKVC---- 288
Query: 243 SPNRSFQKIKLDISRTLQK--------SNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294
             N S + +K  +S             S + +Y +  G+  T     ++ V    F  + 
Sbjct: 289 --NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF 346
Query: 295 RQIVSSSRDKTIKLW 309
           +++ S SRD  I  W
Sbjct: 347 QELYSGSRDCNILAW 361

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 33/255 (12%)
Query: 1   MSTETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR 59
           +  ET +L  TL GH G V ++   +PKF   + SCS D  ++IWK    + N    Q  
Sbjct: 38  VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK----EENGRWSQIA 93
Query: 60  LKG-HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAF 114
           +   HS  ++ +  +    G   L  S D  + + +     TT     + H   V S ++
Sbjct: 94  VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Query: 115 SV-------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFS 158
           +              ++R+ V+   D  +K+W   +  +  ++E   +GHSDWV  V +S
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 159 PN-HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           P       + S   DR   +W   N      K  +        L   + S  G++ A  G
Sbjct: 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273
Query: 213 KDMNAMLWDLN-DGK 226
            D    LW  N +GK
Sbjct: 274 GDNKVTLWKENLEGK 288

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 4   ETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
           ET +L  TL GH G V ++   +PKF   + SCS D  ++IWK    + N    Q  +  
Sbjct: 41  ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK----EENGRWSQIAVHA 96
Query: 63  -HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSV- 116
            HS  ++ +  +    G   L  S D  + + +     TT     + H   V S +++  
Sbjct: 97  VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156
Query: 117 ------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPN- 160
                       ++R+ V+   D  +K+W   +  +  ++E   +GHSDWV  V +SP  
Sbjct: 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV 216
Query: 161 HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM 215
                + S   DR   +W   N      K  +        L   + S  G++ A  G D 
Sbjct: 217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
Query: 216 NAMLWDLN-DGK 226
              LW  N +GK
Sbjct: 277 KVTLWKENLEGK 288

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 40/192 (20%)
Query: 19  VTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG 76
           V++I     FP  + ++S S+D  L IW + +D +N     + L GH   ++DI +   G
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSN----PRTLIGHRATVTDIAIIDRG 193
Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVD-NRQI--VSSSRDKTI 130
              LS S D T+RLW+   G T   F   E+    V S+A  V  +RQ+  +S+S+   +
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 253
Query: 131 KLWNTLAHCKFTIVEDGHSDWV---------------------SCVRFSPNHQNPIIVSA 169
           +      + K+ I   GH   V                     SC   + +  N   + A
Sbjct: 254 EFG---TYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308
Query: 170 GWDR-MVKVWNL 180
           G++  M+  W+L
Sbjct: 309 GYENGMLAQWDL 320

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 19  VTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG 76
           V++I     FP  + ++S S+D  L IW + +D +N     + L GH   ++DI +   G
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSN----PRTLIGHRATVTDIAIIDRG 190
Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVD-NRQI--VSSSRDKTI 130
              LS S D T+RLW+   G T   F   E+    V S+A  V  +RQ+  +S+S+   +
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL 250
Query: 131 KLWNTLAHCKFTIVEDGHSDWVSCV 155
           +      + K+ I   GH   V  V
Sbjct: 251 EFG---TYGKYVIA--GHVSGVITV 270

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI- 121
           H   +  + + SDG  A+SG  D ++++WDL+     + +  H+ +V  VA       I 
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV-SCVRFSPNHQNPIIV--SAGWDRMVKVW 178
           +S   D  I LW+T      T ++   SD + + V + P   +        G   +V + 
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
Query: 179 NLTNCKLKINHSGH-TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
           N  + +    HS + TG   +   SP     AS  +D    + D +  +    L H D +
Sbjct: 258 NPDSAQTSAVHSQNITGLAYSYHSSP---FLASISEDCTVAVLDADFSEVFRDLSHRDFV 314
Query: 238 TALCFSP 244
           T + +SP
Sbjct: 315 TGVAWSP 321

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 66  FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS- 124
           F++ I  +S G   L     KT R+      K       HT  VL +A+   N  +++S 
Sbjct: 46  FMALIXEASGGGAFLVLPLGKTGRV-----DKNVPLVXGHTAPVLDIAWXPHNDNVIASG 100
Query: 125 SRDKTIKLWN------TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
           S D T+ +W        L   +  I  +GH+  V  V + P  QN +++SAG D ++ VW
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGXDNVILVW 159
Query: 179 NLTN--CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG 225
           ++      L +    H   + +V  S DG+L  +  +D    + +   G
Sbjct: 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 32  ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW 91
           IL  S    + +W+L  ++T   V +     H   +S + + S G  A+SGS D  +++W
Sbjct: 96  ILVASDSGAVELWELDENETLI-VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154
Query: 92  DLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNT 135
           DLA       +  H   V  VA S     + +S S D  I LW+T
Sbjct: 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 16/170 (9%)
Query: 87  TLRLWDLAAGKT--TRRFEDHTKD--VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT 142
            + LW+L   +T    +F  +  D  V +V+      Q VS S+D  IK+W+ LA     
Sbjct: 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD-LAQQVVL 162
Query: 143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT--GYLNT-V 199
                H+  V+CV  SP H++ + +S   D  + +W+ T C    +  G +  GYL T +
Sbjct: 163 SSYRAHAAQVTCVAASP-HKDSVFLSCSEDNRILLWD-TRCPKPASQIGCSAPGYLPTSL 220
Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKH----LHTLVHNDIITALCFSPN 245
              P  S     G D N  +  L D K     L + VH+  +T L FSP+
Sbjct: 221 AWHPQQSEVFVFG-DENGTV-SLVDTKSTSCVLSSAVHSQCVTGLVFSPH 268

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 102/255 (40%), Gaps = 33/255 (12%)
Query: 1   MSTETLQLRGTLNGHNGWVTQIA-TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR 59
           +  ET +L  TL GH G V ++   +PKF   + SCS D  + IWK    + N    Q  
Sbjct: 38  VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK----EENGRWSQIA 93
Query: 60  LKG-HSHFISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAF 114
           +   HS  ++ +  +    G   L  S D  + + +     TT     + H   V S ++
Sbjct: 94  VHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Query: 115 SV-------------DNRQIVSSSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFS 158
           +              ++R+ V+   D  +K+W   +  +  ++E   +GHSDWV  V +S
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 159 PN-HQNPIIVSAGWDRMVKVWNLTN-----CKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           P         S   DR   +W   N      K  +        L   + S  G++ A  G
Sbjct: 214 PTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273
Query: 213 KDMNAMLWDLN-DGK 226
            D    LW  N +GK
Sbjct: 274 GDNKVTLWKENLEGK 288

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 66  FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS- 124
           F++ I  +S G   L     KT R+      K       HT  VL +A+   N  +++S 
Sbjct: 46  FMALICEASGGGAFLVLPLGKTGRV-----DKNVPLVCGHTAPVLDIAWCPHNDNVIASG 100
Query: 125 SRDKTIKLWN------TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
           S D T+ +W        L   +  I  +GH+  V  V + P  QN +++SAG D ++ VW
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVW 159
Query: 179 NLTN--CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG 225
           ++      L +    H   + +V  S DG+L  +  +D    + +   G
Sbjct: 160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 56  PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115
           P  +L GH   IS +  +      LS S D TLR+W    G +   F  H++ ++S ++ 
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWV 298
Query: 116 VDNRQIVSSSRDKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM 174
            D++ ++S S D +++LW+   +    + + DG    +   R S + Q   +  A  D  
Sbjct: 299 GDDK-VISCSMDGSVRLWSLKQNTLLALSIVDGVP--IFAGRISQDGQKYAV--AFMDGQ 353
Query: 175 VKVWNLT--NCKLKINHSGHTGYLNTVTV 201
           V V++L   N K +  +    G LN + +
Sbjct: 354 VNVYDLKKLNSKSRSLYGNRDGILNPLPI 382

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 4   ETLQLRGT------LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ 57
           E L  +G+      L GH   +TQ+  N K  D + SCS+D++  +W        Y +  
Sbjct: 14  ENLYFQGSHMKAIKLTGHERPLTQVKYN-KEGDLLFSCSKDSSASVW--------YSLNG 64
Query: 58  KRL---KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK 97
           +RL    GH+  I  I +     Y ++GS D +++LWD++ G+
Sbjct: 65  ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.39
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.31
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.23
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.21
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.21
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.11
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.08
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.02
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.95
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.86
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.85
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.82
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.72
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.68
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.6
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.58
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.58
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.56
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.41
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.38
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.37
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.33
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.3
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.2
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.19
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.18
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.18
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.16
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.15
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.08
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.07
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.97
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.89
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.89
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.87
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.81
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.57
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.54
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.45
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.42
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.21
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.18
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.08
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.96
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.88
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.79
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.64
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.55
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.49
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.35
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.22
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.93
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.87
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.59
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.19
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.17
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.02
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.67
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.39
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.35
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.21
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.02
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.78
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.75
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.67
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.58
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.35
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.5
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.04
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	91.33
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.74
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.7
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	88.74
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.66
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	87.13
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.62
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	86.43
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.1
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.98
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	84.07
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	83.56
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	83.39
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	80.43

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.1e-50  Score=353.61  Aligned_cols=317  Identities=68%  Similarity=1.178  Sum_probs=266.0

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      .+++++|..+|.||.+.|++|+|+|+.+++|+|||.||+|++||+.........+...+.+|...|.+++|+|++++|++
T Consensus        24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            46788999999999999999999998778999999999999999987655555566678899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      ++.|+.|++|+............+...+....+++++..+++++.|+.+++||............+|...+.+++|+++.
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            99999999999999988888888888999999999999999999999999999887777667777899999999999988


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      ...++++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++|+.|+.|++||+.+.+.+..+.+.       
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-------  256 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-------  256 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-------
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-------
Confidence            8888999999999999999999988888999999999999999999999999999999999887765444322       


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                                                               ..+.++.|+|++.+ ++++.|+.|++||+.....     
T Consensus       257 -----------------------------------------~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~-----  289 (340)
T 4aow_A          257 -----------------------------------------DIINALCFSPNRYW-LCAATGPSIKIWDLEGKII-----  289 (340)
T ss_dssp             -----------------------------------------SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEE-----
T ss_pred             -----------------------------------------ceEEeeecCCCCce-eeccCCCEEEEEECCCCeE-----
Confidence                                                     23456677777654 5566799999998754433     


Q ss_pred             cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeecc
Q psy6984         322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR  378 (380)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~~  378 (380)
                            +..+...........+...|.+++|+|||++|++|+.||.|+||++..+++
T Consensus       290 ------~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          290 ------VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             ------EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred             ------EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence                  222332222233456778899999999999999999999999999998764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-50  Score=350.99  Aligned_cols=312  Identities=51%  Similarity=0.850  Sum_probs=258.2

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      +.+.+.+..+|.||.+.|++++++|..+++|++|+.|++|++|++.........+...+.+|...|.+++|+|++++|++
T Consensus         3 ~~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s   82 (319)
T 3frx_A            3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS   82 (319)
T ss_dssp             -CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence            35678899999999999999999997678999999999999999875443344455678899999999999999999999


Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      |+.|+.|++||+.+++....+.+|...|.+++|+|++..+++++.|+.|++||+......  ...+|...|.++++.|..
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~--~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA--TLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEEECCC-
T ss_pred             EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEeccCCcEEEEEEccCC
Confidence            999999999999999999999999999999999999999999999999999998654332  335789999999999864


Q ss_pred             C----CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCce
Q psy6984         162 Q----NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       162 ~----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      .    ...+++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+..    
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----  236 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA----  236 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC----
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC----
Confidence            2    34799999999999999999888888889999999999999999999999999999999988765543321    


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                                                                  ...+.+++|+|++.+|++++. ..+++|+...... 
T Consensus       237 --------------------------------------------~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~-  270 (319)
T 3frx_A          237 --------------------------------------------QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYL-  270 (319)
T ss_dssp             --------------------------------------------CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEE-
T ss_pred             --------------------------------------------CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCee-
Confidence                                                        124668899999999988775 4599998654322 


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                                ...+++... .....+...+.+++|+|||++|++|+.||.|+||++.+.
T Consensus       271 ----------~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          271 ----------VDDLRPEFA-GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ----------EEEECCCCT-TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             ----------eeccCcccc-ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence                      222221110 011223456789999999999999999999999999754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.6e-49  Score=370.39  Aligned_cols=346  Identities=24%  Similarity=0.359  Sum_probs=270.9

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc-------------------------------
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY-------------------------------   53 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~-------------------------------   53 (380)
                      +.++...|.+|.+.|++++++|+ +++||+|+.||+|++||+.......                               
T Consensus        48 ~~~~~~~~~~h~~~v~~~~~spd-g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           48 SLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             CSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             CcccCeEecCCCCceEEEEECCC-CcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            34566788999999999999998 7899999999999999985321100                               


Q ss_pred             ----------ccccccccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE
Q psy6984          54 ----------GVPQKRLKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV  122 (380)
Q Consensus        54 ----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  122 (380)
                                ......+.+|...|++++|+|++. +|++|+.|+.|++||..+++....+.+|...|.+++|+|++++++
T Consensus       127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence                      001123568999999999999986 699999999999999999988999999999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCcceEEEeeC------CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE---------
Q psy6984         123 SSSRDKTIKLWNTLAHCKFTIVED------GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI---------  187 (380)
Q Consensus       123 s~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---------  187 (380)
                      +++.|++|++||...+.....+..      +|...|.+++|+|+++  +|++++.|++|++||+.+.+...         
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~  284 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT--KIASASADKTIKIWNVATLKVEKTIPVGTRIE  284 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC--EEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence            999999999999877665555433      7999999999999765  79999999999999998754322         


Q ss_pred             ----------------------------------eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--
Q psy6984         188 ----------------------------------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL--  231 (380)
Q Consensus       188 ----------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--  231 (380)
                                                        ...+|...|.+++|+|+|++|++++.|+.|++||+.+++....+  
T Consensus       285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~  364 (611)
T 1nr0_A          285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD  364 (611)
T ss_dssp             GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC
T ss_pred             ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc
Confidence                                              23478889999999999999999999999999999877654432  


Q ss_pred             EecCceEE------------------------------------------------------------------------
Q psy6984         232 VHNDIITA------------------------------------------------------------------------  239 (380)
Q Consensus       232 ~~~~~i~~------------------------------------------------------------------------  239 (380)
                      .|...+.+                                                                        
T Consensus       365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~  444 (611)
T 1nr0_A          365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE  444 (611)
T ss_dssp             SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred             CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence            12233333                                                                        


Q ss_pred             ---------EEeecCcccceeeeeeeeeccccceEEEEcCCceee-eeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         240 ---------LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME-TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       240 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                               ++|+|++.+      +.....++.+.+|++..+... .....|...|.+++|+|+|++|++++.|++|++|
T Consensus       445 ~~~~~~v~~va~spdg~~------lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w  518 (611)
T 1nr0_A          445 VPISYNSSCVALSNDKQF------VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY  518 (611)
T ss_dssp             EECSSCEEEEEECTTSCE------EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eecCCCceEEEEeCCCCE------EEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEE
Confidence                     333333322      122334667889988776542 1225677889999999999999999999999999


Q ss_pred             ecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         310 NTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      +.....+          ....       .....|...|.+++|+|||++||+|+.|+.|++|++..+
T Consensus       519 ~~~~~~~----------~~~~-------~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          519 SVANNFE----------LAHT-------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             EGGGTTE----------ESCC-------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             EcCCCCc----------eeee-------eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence            8643111          1100       011236778999999999999999999999999998643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-48  Score=368.77  Aligned_cols=334  Identities=25%  Similarity=0.375  Sum_probs=269.0

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ..++.+|.+.|++++|+|+.+.+|++|+.|++|++|+.....     ....+.+|...|++++|+|+|++|++|+.|+.|
T Consensus       140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i  214 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI  214 (611)
T ss_dssp             CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----EeeeeccccCceEEEEECCCCCEEEEEECCCcE
Confidence            456889999999999999855579999999999999965321     234578999999999999999999999999999


Q ss_pred             EEEECCCCceeeeec-------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE-------------------
Q psy6984          89 RLWDLAAGKTTRRFE-------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT-------------------  142 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~-------------------  142 (380)
                      ++||+.+++....+.       +|.+.|.+++|+|++++|++++.|++|++||+.+.....                   
T Consensus       215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (611)
T 1nr0_A          215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK  294 (611)
T ss_dssp             EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred             EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence            999999998888774       799999999999999999999999999999976543221                   


Q ss_pred             -----------------------EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-e--------
Q psy6984         143 -----------------------IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-S--------  190 (380)
Q Consensus       143 -----------------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~--------  190 (380)
                                             ....+|...|.+++|+|+++  +|++++.|++|++||+.+.+..... .        
T Consensus       295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~--~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~  372 (611)
T 1nr0_A          295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITG  372 (611)
T ss_dssp             SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence                                   12347889999999999765  7999999999999998754321110 0        


Q ss_pred             -------------------------------------------------------------------------CCccceE
Q psy6984         191 -------------------------------------------------------------------------GHTGYLN  197 (380)
Q Consensus       191 -------------------------------------------------------------------------~~~~~i~  197 (380)
                                                                                               .|...+.
T Consensus       373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~  452 (611)
T 1nr0_A          373 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS  452 (611)
T ss_dssp             EEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEE
T ss_pred             EEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCce
Confidence                                                                                     1223467


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC-cee
Q psy6984         198 TVTVSPDGSLCASGGKDMNAMLWDLNDGKH--LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH-GKM  274 (380)
Q Consensus       198 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  274 (380)
                      +++|+|+|++|++|+.|+.|++||+..+..  .....|...|.+++|+|++.+..      ....+..+.+|+... ++.
T Consensus       453 ~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~la------s~s~d~~v~~w~~~~~~~~  526 (611)
T 1nr0_A          453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV------ATDQSRKVIPYSVANNFEL  526 (611)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE------EEETTSCEEEEEGGGTTEE
T ss_pred             EEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEE------EEcCCCCEEEEEcCCCCce
Confidence            899999999999999999999999987653  23456888999999999987633      334578899999976 554


Q ss_pred             eee-eec-cccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCC-CCceEEEE
Q psy6984         275 ETP-FFS-LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD-PPMCLSLA  351 (380)
Q Consensus       275 ~~~-~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  351 (380)
                      ... ... |...|.+++|+||+++|++|+.|++|++|++..+.+..         ..         ....| ...|.+++
T Consensus       527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~---------~~---------~~~~h~~~~v~~v~  588 (611)
T 1nr0_A          527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP---------II---------IKGAHAMSSVNSVI  588 (611)
T ss_dssp             SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC---------EE---------ETTSSTTSCEEEEE
T ss_pred             eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc---------ch---------hhccCcccCeeEEE
Confidence            433 333 78899999999999999999999999999875432100         00         11234 56789999


Q ss_pred             EecCCCEEEEEeeCCeEEEEEee
Q psy6984         352 WSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       352 ~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      |+||++ |++|+.|+.|++|++.
T Consensus       589 fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          589 WLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEETTE-EEEEETTSCEEEEECC
T ss_pred             EcCCCE-EEEecCCCCEEEEecc
Confidence            999999 9999999999999984

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-48  Score=339.18  Aligned_cols=296  Identities=22%  Similarity=0.352  Sum_probs=250.1

Q ss_pred             eEEeEEecCcccceEEEEeCCC---CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPK---FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      ..+...+.+|.+.|++++|+|+   .+.+|+||+.|++|++|++.....   .....+.+|...|.++.+++++.+++++
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence            4456677899999999999874   246899999999999999864321   1223578999999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      +.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++.|+.+++|++......... ..+...+.+++|+|+++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~  177 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGK  177 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSS
T ss_pred             eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999998776655443 36777899999999764


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                        +|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||++.++....            
T Consensus       178 --~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~------------  243 (321)
T 3ow8_A          178 --YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT------------  243 (321)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE------------
T ss_pred             --EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE------------
Confidence              799999999999999999998888899999999999999999999999999999999987654322            


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL  322 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  322 (380)
                                                         +.+|...|.+++|+|++++|++|+.|++|++||+..+..      
T Consensus       244 -----------------------------------~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~------  282 (321)
T 3ow8_A          244 -----------------------------------LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC------  282 (321)
T ss_dssp             -----------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------
T ss_pred             -----------------------------------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE------
Confidence                                               123445688999999999999999999999998754432      


Q ss_pred             ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                           +..+         ..|...|.+++|+|+|++|++++.||.|++||..
T Consensus       283 -----~~~~---------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          283 -----VHTF---------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             -----EEEE---------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             -----EEEE---------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence                 2222         2345678899999999999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-48  Score=347.62  Aligned_cols=289  Identities=29%  Similarity=0.507  Sum_probs=250.0

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ...+.||.+.|+++.|+|+ +.+|++|+.||+|++||+....     ....+.+|...|.+++|+|++++|++|+.|+.|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~-----~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-----EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            4578899999999999998 6899999999999999986543     234578999999999999999999999999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ++||+.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||+........+ .+|...|.++.++|++.  +|++
T Consensus       175 ~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~--~l~s  251 (410)
T 1vyh_C          175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGT--LIAS  251 (410)
T ss_dssp             CEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSS--EEEE
T ss_pred             EEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCC--EEEE
Confidence            99999999999999999999999999999999999999999999998876655443 47899999999998764  7999


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC--------------------CCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD--------------------GSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      ++.|+.|++||+.+.+....+.+|...|.+++|+|+                    +.+|++|+.|+.|++||+.+++.+
T Consensus       252 ~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          252 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  331 (410)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            999999999999998888888899999999999996                    678999999999999999887654


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      ..+                                               .+|...|.+++|+|++++|++|+.||+|++
T Consensus       332 ~~~-----------------------------------------------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v  364 (410)
T 1vyh_C          332 MTL-----------------------------------------------VGHDNWVRGVLFHSGGKFILSCADDKTLRV  364 (410)
T ss_dssp             EEE-----------------------------------------------ECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred             EEE-----------------------------------------------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            332                                               133456778999999999999999999999


Q ss_pred             EecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         309 WNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       309 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      ||...+..+..           +         ..|...|.+++|+|++++|++|+.||.|+||++
T Consensus       365 wd~~~~~~~~~-----------~---------~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          365 WDYKNKRCMKT-----------L---------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECCTTSCCCEE-----------E---------ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EECCCCceEEE-----------E---------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            98754322211           1         235567899999999999999999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.6e-47  Score=332.00  Aligned_cols=316  Identities=40%  Similarity=0.799  Sum_probs=249.2

Q ss_pred             eeEEeEEecCcccceEEEEe-----CCCCCCeEEEeeCCCeEEEeecCCCCCC--cccccccccCCCcceEEEEEccCCC
Q psy6984           5 TLQLRGTLNGHNGWVTQIAT-----NPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRLKGHSHFISDIVLSSDGN   77 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~-----~~~~~~~l~t~~~dg~v~vw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~   77 (380)
                      .+++...|.||.+.|+++++     ++..+.+|+||+.|++|++|++......  ...+...+.+|...|.+++|+|++.
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            45678899999999999999     6634789999999999999998653321  2234456789999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe-eCCCcCcEEEEE
Q psy6984          78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSDWVSCVR  156 (380)
Q Consensus        78 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~  156 (380)
                      +|++|+.|+.|++||+.+++....+.+|...|.+++|+|+++++++++.|+.|++||+......... ...|...|.+++
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence            9999999999999999999999999999999999999999999999999999999998754333221 136888999999


Q ss_pred             EccCCCC--------CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc-E
Q psy6984         157 FSPNHQN--------PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK-H  227 (380)
Q Consensus       157 ~~~~~~~--------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~  227 (380)
                      |+|....        .+|++++.|+.|++||. ..+....+.+|...|.+++|+|+|++|++|+.|+.|++||+.... .
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence            9997531        58999999999999995 445566778899999999999999999999999999999984321 1


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                      ...                                                +.+...|.+++|+|+++++++ +.|+.|+
T Consensus       249 ~~~------------------------------------------------~~~~~~v~~v~~sp~~~~la~-~~d~~v~  279 (343)
T 2xzm_R          249 QRE------------------------------------------------FDAGSTINQIAFNPKLQWVAV-GTDQGVK  279 (343)
T ss_dssp             SEE------------------------------------------------EECSSCEEEEEECSSSCEEEE-EESSCEE
T ss_pred             cee------------------------------------------------ecCCCcEEEEEECCCCCEEEE-ECCCCEE
Confidence            000                                                011234778999999988765 4688899


Q ss_pred             EEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984         308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~  377 (380)
                      +|++.......+......       +.........+...+.+++|+|+|++|++|+.||.|++|++..+.
T Consensus       280 iw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          280 IFNLMTQSKAPVCTIEAE-------PITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EEESSSCCSCSEEECCCC-------SGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EEEeCCCCCCceEEeecC-------cchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            999765433221111100       000011123466778999999999999999999999999998754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.7e-47  Score=333.50  Aligned_cols=292  Identities=25%  Similarity=0.448  Sum_probs=246.4

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ++...+|.||.+.|+++.|+|+ +.+|++|+.||+|++||+....     ....+..|...|.+++|+|++++|++|+.|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  118 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLD  118 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCC-----EEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             chhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCC-----cceEeecCCccEEEEEECCCCCEEEEEeCC
Confidence            4567789999999999999998 6899999999999999976432     233457788999999999999999999999


Q ss_pred             CcEEEEECCCC----ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          86 KTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        86 ~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      +.|++|++.++    +....+.+|...|.++.|++++. +++++.|+.|++||+.+...... ..+|...|.+++|+|++
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~-~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT-FTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTS
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE-EcCCCCceEEEEECCCC
Confidence            99999999875    34566788999999999998765 89999999999999877655444 35789999999999975


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      .  ++++++.|+.|++||+++......+.+|...|.+++|+|++++|++|+.|+.|++||++.++.+..+.+.       
T Consensus       197 ~--~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-------  267 (340)
T 1got_B          197 R--LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-------  267 (340)
T ss_dssp             S--EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-------
T ss_pred             C--EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC-------
Confidence            4  8999999999999999998888888899999999999999999999999999999999887654332211       


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                                                            .+...|.+++|+|++++|++|+.||.|++||.........  
T Consensus       268 --------------------------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--  307 (340)
T 1got_B          268 --------------------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--  307 (340)
T ss_dssp             --------------------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred             --------------------------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE--
Confidence                                                  0113477899999999999999999999998754332211  


Q ss_pred             cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                               +         ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus       308 ---------~---------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          308 ---------L---------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ---------E---------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ---------e---------ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                     1         23556789999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-46  Score=332.23  Aligned_cols=295  Identities=24%  Similarity=0.407  Sum_probs=247.1

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ++...+|.||.+.|++++|+|+ +.+|+||+.||+|++||......     ...+..|...|.+++|+|++++|++|+.|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~lasg~~d  127 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAYAPSGCAIACGGLD  127 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCE-----EEEEECSSSCCCEEEECTTSSEEEEESTT
T ss_pred             cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCc-----ceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            3467889999999999999998 68999999999999999754322     23456688889999999999999999999


Q ss_pred             CcEEEEECCCC------ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984          86 KTLRLWDLAAG------KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        86 ~~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  159 (380)
                      +.+++|++...      .....+..|...|.+++|+|++..+++++.|++|++||+.+......+ .+|...|.++.++|
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAP  206 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEe
Confidence            99999998653      234566789999999999999999999999999999998876655443 47888999999998


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA  239 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  239 (380)
                      .....+|++|+.|+.|++||+++.+....+.+|...|++++|+|++.+|++++.|+.|++||++.++.+..+...     
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~-----  281 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE-----  281 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-----
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----
Confidence            765568999999999999999999888888899999999999999999999999999999999876543222100     


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeE
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  319 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  319 (380)
                                                              .+...+.+++|+|++++|++|+.|++|++||+..+..+. 
T Consensus       282 ----------------------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~-  320 (354)
T 2pbi_B          282 ----------------------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS-  320 (354)
T ss_dssp             ----------------------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE-
T ss_pred             ----------------------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE-
Confidence                                                    011246688999999999999999999999875443221 


Q ss_pred             eecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         320 VDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                                .+         ..|...|.+++|+|||++|++|+.||.|+||+
T Consensus       321 ----------~l---------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 ----------IL---------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ----------EE---------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ----------EE---------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                      11         24566789999999999999999999999995

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-46  Score=359.96  Aligned_cols=319  Identities=56%  Similarity=0.973  Sum_probs=256.3

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      +.+...|.+|.+.|++|+++|+.+++|+|||.||+|++|++.............+.+|...|.+++|+|++++|++|+.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            45677899999999999999986789999999999999998765444444455688999999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee--CCCcCcEEEEEEccCCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  163 (380)
                      +.|+|||+.+++....+.+|...|.+++|+|+++.+++++.|++|++||....+......  .+|...|.|++|+|++..
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            999999999999999999999999999999999999999999999999986655444332  468889999999998766


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                      ..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..          
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~----------  601 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA----------  601 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC----------
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC----------
Confidence            7899999999999999999988888899999999999999999999999999999999988765433211          


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE  323 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  323 (380)
                                                            ...+.+++|+|++.+|++++ |+.|++||+..+..+..+...
T Consensus       602 --------------------------------------~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~  642 (694)
T 3dm0_A          602 --------------------------------------NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVD  642 (694)
T ss_dssp             --------------------------------------SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCC
T ss_pred             --------------------------------------CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccc
Confidence                                                  12356788999988887765 667999998766554433221


Q ss_pred             cceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         324 TKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ......... .........+...|.+++|||||++|++|+.||.|+||++.
T Consensus       643 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          643 LKAEAEKAD-NSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CC-----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccccccc-ccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            111000000 00000111222347899999999999999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.9e-46  Score=320.92  Aligned_cols=294  Identities=22%  Similarity=0.377  Sum_probs=242.6

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      +++..+|.+|.+.|++++|+|+ +.+|++++.||+|++||+....     ....+..|...|.++.|+|++++|++|+.|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d   76 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDD   76 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             ceeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCCEEEEECCC
Confidence            4577889999999999999998 6899999999999999986432     234567899999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      +.|++||+.+++.+..+..|...|.+++|+|++.++++|+.|++|++||+...........+|...|.+++|+|... ..
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~  155 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-ST  155 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT-TE
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC-CE
Confidence            99999999999999999999999999999999999999999999999998776555555678999999999999533 37


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEee-eCCccceEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINH-SGHTGYLNTVTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                      |++|+.|++|++||++........ .+|...+..+.++|  ++++|++|+.|+.|++||+++++.+..+           
T Consensus       156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-----------  224 (304)
T 2ynn_A          156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----------  224 (304)
T ss_dssp             EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred             EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-----------
Confidence            999999999999999876554443 35667889999986  7789999999999999999887654332           


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL  322 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  322 (380)
                                                          .+|...|.+++|+|++++|++|+.||+|++||..++.       
T Consensus       225 ------------------------------------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~-------  261 (304)
T 2ynn_A          225 ------------------------------------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK-------  261 (304)
T ss_dssp             ------------------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-------
T ss_pred             ------------------------------------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------
Confidence                                                2344567789999999999999999999999865432       


Q ss_pred             ccceEEEeeCcccccccCCCCCCceEEEEEecCCC--EEEEEeeCCeEEEEEee
Q psy6984         323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ--TLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~g~~dg~v~iw~~~  374 (380)
                          +...+         ..+...+.+++|+|+|+  ++++|+.| .+.+|++.
T Consensus       262 ----~~~~~---------~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~  301 (304)
T 2ynn_A          262 ----VEKTL---------NVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLG  301 (304)
T ss_dssp             ----EEEEE---------CCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC
T ss_pred             ----eeeec---------cCCCccEEEEEECCCCCceEEEEecCC-ceEEEEec
Confidence                22222         12344578899999886  46766544 47788765

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-46  Score=329.37  Aligned_cols=326  Identities=20%  Similarity=0.310  Sum_probs=248.2

Q ss_pred             eeeEEeEEecCccc-ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984           4 ETLQLRGTLNGHNG-WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         4 ~~~~~~~~~~~h~~-~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      +.+++..+|.+|.+ .|.+++|+|+ +.+|++|+.|++|++|++......  .......+|...|.+++|+|++++|++|
T Consensus         3 ~~~~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~l~s~   79 (345)
T 3fm0_A            3 DSLVLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWI--CKSVLSEGHQRTVRKVAWSPCGNYLASA   79 (345)
T ss_dssp             -CEEEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEE--EEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred             ccEEEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcce--eeeeeccccCCcEEEEEECCCCCEEEEE
Confidence            46788999999998 9999999998 789999999999999998643211  0112236899999999999999999999


Q ss_pred             eCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce--EEEeeCCCcCcEEEEEEc
Q psy6984          83 SWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK--FTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~  158 (380)
                      +.|+.|++||+..+.  ....+.+|...|.+++|+|++++|++++.|+.|++||+.....  ......+|...|.+++|+
T Consensus        80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (345)
T 3fm0_A           80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH  159 (345)
T ss_dssp             ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred             ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence            999999999988763  5677889999999999999999999999999999999865432  233446889999999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCce--eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCc
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI  236 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  236 (380)
                      |++.  +|++++.|+.|++||++..+  ....+.+|...|.+++|+|+|++|++++.|+.|++||.......      ..
T Consensus       160 p~~~--~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~------~~  231 (345)
T 3fm0_A          160 PSQE--LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE------QG  231 (345)
T ss_dssp             SSSS--CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT------TC
T ss_pred             CCCC--EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC------cc
Confidence            9765  69999999999999998764  33567789999999999999999999999999999986332110      00


Q ss_pred             eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec-cccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS-LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      +....  .+                ..        .+....+.+ |...|++++|+|++..|++++.|+.|++|+.....
T Consensus       232 ~~~~~--~~----------------~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          232 VACSG--SD----------------PS--------WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             CCCC---------------------CE--------EEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             ceeec--cC----------------Cc--------cceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence            00000  00                00        000111112 45678999999999999999999999999864321


Q ss_pred             eeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC-CEEEEEeeCCeEEEEEeeeec
Q psy6984         316 KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG-QTLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~g~~dg~v~iw~~~~~~  377 (380)
                      ...   .......        ......|...|.+++|+|++ .+||+|+.||.|++|++....
T Consensus       286 ~~~---~~~~~~~--------~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          286 DPQ---QPTFSLT--------AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             CTT---SCCEEEE--------EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             Ccc---eeeEEEE--------eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            100   0000000        01123567789999999998 489999999999999987544

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.2e-47  Score=337.79  Aligned_cols=311  Identities=24%  Similarity=0.415  Sum_probs=251.1

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      ++.++.+..+|.||.+.|++++|+|+ +++|++|+.||+|++||.....     ....+.+|...|.+++|+|++++|++
T Consensus        52 ~~~~~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~las  125 (380)
T 3iz6_a           52 NPTDLVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQ-----KTHAIKLHCPWVMECAFAPNGQSVAC  125 (380)
T ss_dssp             CCCCCEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTE-----EEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred             ccceeEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-----cceEEecCCCCEEEEEECCCCCEEEE
Confidence            34567788899999999999999997 6899999999999999975432     23456789999999999999999999


Q ss_pred             EeCCCcEEEEECCCCc-------eeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEee----CCCc
Q psy6984          82 GSWDKTLRLWDLAAGK-------TTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVE----DGHS  149 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~----~~~~  149 (380)
                      |+.|+.|++||+.+..       ....+.+|.+.|.++.|+|++ ..+++|+.|++|++||+.++.......    .+|.
T Consensus       126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT  205 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred             eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence            9999999999987532       345577899999999999974 579999999999999988776654432    5788


Q ss_pred             CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      ..|.++.+++.. ..+|++|+.|+.|++||++. .+....+.+|...|++++|+|++++|++|+.|+.|++||+++++.+
T Consensus       206 ~~v~~~~~~~~~-~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          206 ADVLSLSINSLN-ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             SCEEEEEECSSS-CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             cCeEEEEeecCC-CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence            899999998743 34899999999999999984 4556677899999999999999999999999999999999988765


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      ..+....         ..                               ...+...+.+++|+|+|++|++|+.||.|++
T Consensus       285 ~~~~~~~---------~~-------------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v  324 (380)
T 3iz6_a          285 QVYNREP---------DR-------------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYV  324 (380)
T ss_dssp             EEECCCC---------SS-------------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred             EEecccc---------cc-------------------------------cccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence            4432110         00                               0011234778999999999999999999999


Q ss_pred             EecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         309 WNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       309 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ||...+...           ..+.     .....|...|.+++|+|||++|++|+.||.|+||++.-
T Consensus       325 wd~~~~~~~-----------~~~~-----~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          325 WDTLLAEMV-----------LNLG-----TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EETTTCCEE-----------EEEC-----CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             EECCCCceE-----------EEEe-----cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            987543221           1111     11234667789999999999999999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8e-45  Score=341.95  Aligned_cols=324  Identities=35%  Similarity=0.533  Sum_probs=272.4

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ++...+.+|...|+++.++|+ +..+++++.|++|++|+....      ....+.+|...|.+++|+|++++|++++.|+
T Consensus       253 ~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~  325 (577)
T 2ymu_A          253 QLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASASDDK  325 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCc------EEEEEecCCCCeEEEEECCCCCEEEEEeCCC
Confidence            456788999999999999998 689999999999999996432      2345678999999999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      .|++||+.. +....+..|...+.+++|+|+++.+++++.|+.+++||.... ... ...+|...|.+++|+|+++  +|
T Consensus       326 ~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-~~~-~~~~~~~~v~~~~~s~dg~--~l  400 (577)
T 2ymu_A          326 TVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-LLQ-TLTGHSSSVRGVAFSPDGQ--TI  400 (577)
T ss_dssp             CEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC-EEE-EEECCSSCEEEEEECTTSS--CE
T ss_pred             eEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC-EEE-EecCCCCCeEEEEECCCCC--EE
Confidence            999999764 456677889999999999999999999999999999996443 222 2347888999999999865  68


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecC
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN  245 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~  245 (380)
                      ++++.|+.|++||.. .+....+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+ .|...+.+++|+|+
T Consensus       401 ~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd  478 (577)
T 2ymu_A          401 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD  478 (577)
T ss_dssp             EEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCC
Confidence            999999999999964 45666778899999999999999999999999999999974 4555444 57889999999999


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK  325 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  325 (380)
                      +.+..      ....++.+.+|+. .++....+..|...|.+++|+|++++|++++.||.|++||.. +.          
T Consensus       479 ~~~la------s~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~----------  540 (577)
T 2ymu_A          479 GQTIA------SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ----------  540 (577)
T ss_dssp             SCEEE------EEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC----------
T ss_pred             CCEEE------EEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC----------
Confidence            87633      2335678999995 566677788899999999999999999999999999999842 21          


Q ss_pred             eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                       .+..+         ..|...|.+++|+|||++|++++.|+.|++||
T Consensus       541 -~~~~~---------~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          541 -LLQTL---------TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -EEEEE---------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -EEEEE---------cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence             11111         23566789999999999999999999999997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-44  Score=314.43  Aligned_cols=306  Identities=19%  Similarity=0.281  Sum_probs=228.6

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccc-c-CCCcceEEEEEccCCCEEEEE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-K-GHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      .+++..+|.+|.+.|.+++++|+   +|++|+.|++|++|++......   ....+ . +|...|.+++|+|++++|++|
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~   76 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAG   76 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred             ccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence            45688899999999999999875   8999999999999998653211   11222 3 499999999999999999999


Q ss_pred             eCCCcEEEEECCC-------CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc-c--eEEEeeCCCcCcE
Q psy6984          83 SWDKTLRLWDLAA-------GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-C--KFTIVEDGHSDWV  152 (380)
Q Consensus        83 ~~d~~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~-~--~~~~~~~~~~~~v  152 (380)
                      +.|+.|+|||+..       .+....+.+|...|.+++|+|++++|++++.|+.|++||+... .  .......+|...|
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV  156 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred             eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence            9999999999853       3456678899999999999999999999999999999998432 1  2233446899999


Q ss_pred             EEEEEccCCCCCEEEEEeCCCeEEEEeCCCc--eeeEeeeCCccceEEEEEcCC--CCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         153 SCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC--KLKINHSGHTGYLNTVTVSPD--GSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      .+++|+|++.  +|++++.|++|++||....  +....+.+|...|.+++|+|+  +.+|++++.|+.|++||+..+.. 
T Consensus       157 ~~v~~~p~~~--~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~-  233 (330)
T 2hes_X          157 KHVIWHPSEA--LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE-  233 (330)
T ss_dssp             EEEEECSSSS--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT-
T ss_pred             EEEEECCCCC--EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc-
Confidence            9999999754  7999999999999998765  456677899999999999998  77899999999999999753210 


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-ccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                           ..           ..                 .|     .....+. .|...|.+++|+++ .+|++++.||+|+
T Consensus       234 -----~~-----------~~-----------------~~-----~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~dg~v~  274 (330)
T 2hes_X          234 -----DD-----------QQ-----------------EW-----VCEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLA  274 (330)
T ss_dssp             -----TS-----------CE-----------------EE-----EEEEECCSCCSSCEEEEEECTT-SCEEEEETTSCEE
T ss_pred             -----cc-----------cc-----------------ee-----EEeeecccccccceEEEEEcCC-CEEEEEeCCCEEE
Confidence                 00           00                 00     0001111 24567899999965 4899999999999


Q ss_pred             EEecccceeeeEeecccceEEEeeCcccccccCCCCCC-ceEEEEEec--CCCEEEEEeeCCeEEEEEeee
Q psy6984         308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPP-MCLSLAWST--DGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +|+...+..         +....        ....|.. .+.+++|+|  ++++||+|+.||.|++|++..
T Consensus       275 iw~~~~~~~---------~~~~~--------~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          275 VYEEVDGEW---------KVFAK--------RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEETTEE---------EEEEE--------ESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEcCCCce---------EEEec--------cccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            998643210         01100        0122343 688999999  799999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=317.21  Aligned_cols=290  Identities=17%  Similarity=0.150  Sum_probs=224.1

Q ss_pred             cCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC--Ccc----cccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984          13 NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT--NYG----VPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~--~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ..|...|+++.|+|+ +.+|++++ |+++|+||......  ...    ........|...|.+++|+|++ +|++|+.||
T Consensus        27 ~~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg  103 (344)
T 4gqb_B           27 ACMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG  103 (344)
T ss_dssp             SSCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred             ccccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence            357788999999998 67888877 77889997431100  000    0011123456789999999985 788999999


Q ss_pred             cEEEEECCCCceeee----ecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          87 TLRLWDLAAGKTTRR----FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      .|+|||+.+++....    ..+|...|.+++|+|++++|++|+.|++|++||+.++..... ..+|...|.+++|+|++.
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~-~~~h~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS-YRAHAAQVTCVAASPHKD  182 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECSSCT
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCcCCceEEEEecCCCC
Confidence            999999998876543    347999999999999999999999999999999887665544 458999999999999864


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA  239 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  239 (380)
                      . +|++++.|++|++||+++.+....+  ..|...+.+++|+|+ +++|++|+.|+.|++||+++++.+..         
T Consensus       183 ~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~---------  252 (344)
T 4gqb_B          183 S-VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS---------  252 (344)
T ss_dssp             T-EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE---------
T ss_pred             C-ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE---------
Confidence            3 7899999999999999987765544  345567899999994 67889999999999999987654322         


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEEEecccceeee
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                                                            +..|...|.+++|+|++ ++|++|+.|++|++||...+.   
T Consensus       253 --------------------------------------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---  291 (344)
T 4gqb_B          253 --------------------------------------SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---  291 (344)
T ss_dssp             --------------------------------------EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---
T ss_pred             --------------------------------------EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---
Confidence                                                  22344568889999987 579999999999999864432   


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC-EEEEEeeCCeEEEEEeee
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ-TLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~g~~dg~v~iw~~~~  375 (380)
                              +..          ...|...|.+++|+|+|+ +|++|+.||.|++|++..
T Consensus       292 --------~~~----------~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          292 --------LFR----------SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             --------EEE----------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             --------EEE----------EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                    111          134667799999999987 567899999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.1e-43  Score=332.19  Aligned_cols=325  Identities=35%  Similarity=0.535  Sum_probs=273.3

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ++...+.+|.+.|.+++++|+ +.+|++++.|+.|++|+....      ....+.+|...|.+++|+|++++|++++.|+
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~d-g~~l~~~~~d~~i~~w~~~~~------~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~  284 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVNGVAFRPDGQTIASASDDK  284 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTT-SSCEEEEETTSCEEEECTTSC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEEEecCCCCEEEEEECCC-CCEEEEEeCCCEEEEEeCCCC------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            456788999999999999998 689999999999999985422      2345678999999999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      .|++||. +++....+.+|...|.+++|+|+++.+++++.|+.+++||.......  ...+|...+.+++|+|++.  .|
T Consensus       285 ~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~~~~~~~v~~~~~s~~g~--~l  359 (577)
T 2ymu_A          285 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVAFSPDGQ--TI  359 (577)
T ss_dssp             CEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEEECTTSS--EE
T ss_pred             EEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeCCCCCEEEEEECCCCC--EE
Confidence            9999996 46777888999999999999999999999999999999997654432  2357888999999999765  79


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecC
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPN  245 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~  245 (380)
                      ++++.|+.|++||.. .+....+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+ .|...+.+++|+|+
T Consensus       360 ~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d  437 (577)
T 2ymu_A          360 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  437 (577)
T ss_dssp             EEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC
Confidence            999999999999964 4566677889999999999999999999999999999996 45555554 57888999999998


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccc
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETK  325 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  325 (380)
                      +.+..      ....++.+.+|+.. ++....+..|...|.+++|+|++++|++++.|++|++|+... .          
T Consensus       438 ~~~l~------~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~----------  499 (577)
T 2ymu_A          438 DQTIA------SASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q----------  499 (577)
T ss_dssp             SSEEE------EEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C----------
T ss_pred             CCEEE------EEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C----------
Confidence            76532      23356778999964 556667788889999999999999999999999999998421 1          


Q ss_pred             eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                       .+..+         ..|...|.+++|+|||++||+++.||.|++||.
T Consensus       500 -~~~~~---------~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          500 -LLQTL---------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             -EEEEE---------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             -EEEEE---------eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence             11111         235567889999999999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.7e-43  Score=304.44  Aligned_cols=297  Identities=27%  Similarity=0.453  Sum_probs=243.2

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      ...+..++.||.+.|++++|+|+ +++|++|+.||.|++|++....     ....+.+|...|.+++|+|++++|++++.
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   85 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLVSASD   85 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcc-----cchhhccCCCceEEEEEcCCCCEEEEECC
Confidence            45688899999999999999997 6899999999999999976432     23456789999999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      |+.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.|++||+......... ..|...|.+++|+|++.  
T Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~--  162 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGS--  162 (312)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSS--
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCC--
Confidence            999999999999999999999999999999999999999999999999998776554443 47888999999999754  


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEee-eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINH-SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                      +|++++.|+.|++||+++.+..... ..+...+..++|+|++++|++++.|+.|++||+.+++.+..+....        
T Consensus       163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------  234 (312)
T 4ery_A          163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK--------  234 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSC--------
T ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecC--------
Confidence            7999999999999999987765544 3456789999999999999999999999999999887654432100        


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE  323 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  323 (380)
                       ..                                   ...+......+++++|++|+.||.|++||+..+.        
T Consensus       235 -~~-----------------------------------~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--------  270 (312)
T 4ery_A          235 -NE-----------------------------------KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--------  270 (312)
T ss_dssp             -CS-----------------------------------SSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--------
T ss_pred             -Cc-----------------------------------eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--------
Confidence             00                                   0001111223578899999999999999875433        


Q ss_pred             cceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe--eCCeEEEEEee
Q psy6984         324 TKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY--SDNTIRVWQVS  374 (380)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~--~dg~v~iw~~~  374 (380)
                         .+..+         ..|...+.+++|+|++++|++++  .|+.|++|+.+
T Consensus       271 ---~~~~~---------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          271 ---IVQKL---------QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ---EEEEE---------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ---hhhhh---------hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence               22222         23556788999999999999887  69999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-44  Score=317.48  Aligned_cols=291  Identities=17%  Similarity=0.221  Sum_probs=223.3

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeC------CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSR------DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~------dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ..+|.+.|++++|+|+ +.+|++||.      |++|++|+......... ......+|...|.+++|+|+++ +++++.|
T Consensus        38 p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-~~~~~~~~~~~V~~~~~s~d~~-~l~~s~d  114 (357)
T 4g56_B           38 PACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNES-LCTAGVQTEAGVTDVAWVSEKG-ILVASDS  114 (357)
T ss_dssp             --CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGG-GCSEEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred             cccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCccee-EecccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence            3579999999999998 789999997      77899998654322211 1223457888999999999975 5678889


Q ss_pred             CcEEEEECCCCceee----eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          86 KTLRLWDLAAGKTTR----RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      |.|+|||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||..+...... ..+|...|.+++|+|++
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS-YNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-EcCCCCCEEEEEEccCC
Confidence            999999998876543    2347899999999999999999999999999999877655444 35799999999999976


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      .. ++++++.|+.|++||+++.+.....  ..|...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..        
T Consensus       194 ~~-~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--------  264 (357)
T 4g56_B          194 DT-IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--------  264 (357)
T ss_dssp             SS-CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------
T ss_pred             Cc-eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------
Confidence            43 6889999999999999887655433  346678999999997 56899999999999999977643222        


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CEEEEeeCCCcEEEEecccceee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                                                             +..+...|.+++|+|++ ++|++|+.|++|++||+..+.  
T Consensus       265 ---------------------------------------~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~--  303 (357)
T 4g56_B          265 ---------------------------------------SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE--  303 (357)
T ss_dssp             ---------------------------------------ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE--
T ss_pred             ---------------------------------------EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc--
Confidence                                                   12334567889999987 579999999999999875432  


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEec-CCCEEEEEeeCCeEEEEEeee
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST-DGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~g~~dg~v~iw~~~~  375 (380)
                               .+..          ..|...|.+++|+| |+++|++|+.||.|++|++..
T Consensus       304 ---------~~~~----------~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          304 ---------VFRD----------LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ---------EEEE----------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             ---------EeEE----------CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence                     2211          13566789999998 799999999999999999854

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-43  Score=313.54  Aligned_cols=308  Identities=22%  Similarity=0.400  Sum_probs=235.6

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccc-------------ccccCCCcceEEEEEcc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ-------------KRLKGHSHFISDIVLSS   74 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~-------------~~~~~h~~~v~~~~~~~   74 (380)
                      +...+ +|.+.|++++|+|+ +++|++|+ ++++++|++........+..             .....+...|.+++|+|
T Consensus        57 ~~~~~-~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           57 LHKSL-DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             EEEEE-ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             eEEec-CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence            34344 69999999999998 68899877 68999999865432111100             00112334599999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  154 (380)
                      ++++|++|+.|+.|++||+.+++....+.+|...|.+++|+|+++.+++++.|+.|++||+.+........  +...+.+
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~  211 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTT  211 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999988765544432  4567999


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-------eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-------SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                      ++++|.. ..+|++++.|+.|++||+++......+       .+|...|.+++|+|++++|++|+.|+.|++||+.+...
T Consensus       212 ~~~~~~~-~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          212 VAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  290 (393)
T ss_dssp             EEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             EEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC
Confidence            9999842 248999999999999999987665444       57889999999999999999999999999999976543


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                      ......          +                         ..+.....+.+|...|.+++|+|++++|++|+.||.|+
T Consensus       291 ~~~~~~----------~-------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~  335 (393)
T 1erj_A          291 KSDSKT----------P-------------------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  335 (393)
T ss_dssp             ---------------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             cccccC----------C-------------------------CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            211100          0                         00111223445667799999999999999999999999


Q ss_pred             EEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEec------CCCEEEEEeeCCeEEEEEeeee
Q psy6984         308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST------DGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      +||...+..+..+                    ..|...|.+++|++      ++++|++|+.||.|+||++...
T Consensus       336 iwd~~~~~~~~~l--------------------~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          336 FWDKKSGNPLLML--------------------QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEETTTCCEEEEE--------------------ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEECCCCeEEEEE--------------------CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9987554332211                    23455678888876      7889999999999999998754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-43  Score=319.39  Aligned_cols=347  Identities=14%  Similarity=0.201  Sum_probs=269.2

Q ss_pred             cCcccceEEEEeCCCCCC-eEEEeeCCCeEEEeec----CCCCC------Ccccccccc------cCCCcceEEEEEccC
Q psy6984          13 NGHNGWVTQIATNPKFPD-TILSCSRDNTLIIWKL----TRDDT------NYGVPQKRL------KGHSHFISDIVLSSD   75 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~vw~~----~~~~~------~~~~~~~~~------~~h~~~v~~~~~~~~   75 (380)
                      ..|.+.|++++|+|+ +. +|++|+.||.|++|++    .....      ...+ ...+      .+|...|++++|+|+
T Consensus        42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~  119 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTNQVTCLAWSHD  119 (425)
T ss_dssp             EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CBCEEEEEECTT
T ss_pred             eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccc-cccccccccccCCCCceEEEEEcCC
Confidence            346699999999998 56 9999999999999999    54331      1111 1112      236789999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc----
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW----  151 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~----  151 (380)
                      +++|++++.||.|++|| .+++....+..|...|.+++|+|+++++++++.|+.+++||+.......... .+...    
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~  197 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSI  197 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC-------
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccce
Confidence            99999999999999999 6778888889999999999999999999999999999999987765544432 34443    


Q ss_pred             -----------EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         152 -----------VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       152 -----------v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                                 +.++.|+|++   .+++++.++.|++||+++.+....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  274 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW  274 (425)
T ss_dssp             --------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eeccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence                       7888998863   58899999999999999988877888899999999999999999999999999999


Q ss_pred             ECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE
Q psy6984         221 DLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS  299 (380)
Q Consensus       221 d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  299 (380)
                      |+.+++.+..+. +...+..++|+|++ .      +.....++.+.+|++..++....+..+...+.+++|+|++++|++
T Consensus       275 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  347 (425)
T 1r5m_A          275 HGGNGNSQNCFYGHSQSIVSASWVGDD-K------VISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAV  347 (425)
T ss_dssp             CSSSBSCSEEECCCSSCEEEEEEETTT-E------EEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEE
T ss_pred             ECCCCccceEecCCCccEEEEEECCCC-E------EEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEE
Confidence            999888777664 78889999999987 2      122335678999999999888888888889999999999999999


Q ss_pred             eeCCCcEEEEecccceeeeE-eecccceEEEeeCcccccccCCCCCC--ceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         300 SSRDKTIKLWNTLAHCKFTI-VDLETKKMVEELRPDVVSQSTKADPP--MCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       300 ~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++.||.|++|++........ ............... .......+..  .+.+++|+|+|++|++++.||.|++|++.
T Consensus       348 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          348 AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP-LYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EETTSCEEEEECHHHHC--------------CEECC-EEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EECCCeEEEEECCCCccceeeeecccccccCcccch-hhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99999999999865431100 000000000000000 0011123333  78999999999999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.2e-42  Score=301.24  Aligned_cols=323  Identities=19%  Similarity=0.288  Sum_probs=267.4

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      |.+.|.+++++|+ +.+++++..++.+..|.....     .......+|...|.+++|+|++++|++++ |+.|++||+.
T Consensus         8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~   80 (337)
T 1gxr_A            8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS   80 (337)
T ss_dssp             EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSE-----EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred             cCCceeEEEECCC-CCEEEeecCCCcEeccccCCc-----cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence            5678999999998 678888887777777754321     11223457999999999999999999999 9999999998


Q ss_pred             CCceeee---ec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          95 AGKTTRR---FE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        95 ~~~~~~~---~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      +++....   +.  .|...|.+++|+|+++.+++++.|+.|++||...... .......|...+.+++|+|++.  ++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~  158 (337)
T 1gxr_A           81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK--VCFS  158 (337)
T ss_dssp             STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS--EEEE
T ss_pred             CCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC--EEEE
Confidence            7654332   22  6889999999999999999999999999999876542 2333456888899999999754  7899


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      ++.|+.|++||+++.+....+.+|...+.+++|+|+++++++++.|+.|++||+++++.+..+.+...+..++|+|++.+
T Consensus       159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~  238 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW  238 (337)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE
T ss_pred             EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCE
Confidence            99999999999999888888888999999999999999999999999999999999999988889999999999999865


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV  328 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  328 (380)
                      ...      ...++.+.+|+...++.. .+..+...+.+++|+|++++|++++.||.|++|++..+.....         
T Consensus       239 l~~------~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~---------  302 (337)
T 1gxr_A          239 LAV------GMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ---------  302 (337)
T ss_dssp             EEE------EETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---------
T ss_pred             EEE------EcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE---------
Confidence            332      235678999999877643 5567788899999999999999999999999998755433211         


Q ss_pred             EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         329 EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                                  ..+...+.+++|+|++++|++++.||.|++|++-
T Consensus       303 ------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          303 ------------SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ------------EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ------------ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence                        0123457899999999999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-44  Score=324.45  Aligned_cols=351  Identities=16%  Similarity=0.189  Sum_probs=272.4

Q ss_pred             cccceEEEEeCCCCCCeEEEe----------eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984          15 HNGWVTQIATNPKFPDTILSC----------SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~----------~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      +...|++++|+|+...+|+++          +.||.|++|++......   .......|...|.+++|+|++++|++++.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~   87 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---KPIASLQVDSKFNDLDWSHNNKIIAGALD   87 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---SCSCCCCCSSCEEEEEECSSSSCEEEEES
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---cEEEEEecCCceEEEEECCCCCeEEEEcc
Confidence            346799999999854599999          89999999998754211   11223458889999999999999999999


Q ss_pred             CCcEEEEECCC----CceeeeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcc------eEEE--eeCCCcCc
Q psy6984          85 DKTLRLWDLAA----GKTTRRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHC------KFTI--VEDGHSDW  151 (380)
Q Consensus        85 d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~------~~~~--~~~~~~~~  151 (380)
                      |+.|++||+.+    .+....+..|...|.+++|+|+ +.++++++.|+.|++||+....      ....  ....|...
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            99999999987    4577888899999999999998 8999999999999999987654      2111  12468888


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC------ccceEEEEEcCCC-CEEEEEcCCC---cEEEEE
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH------TGYLNTVTVSPDG-SLCASGGKDM---NAMLWD  221 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~d~---~i~i~d  221 (380)
                      |.+++|+|++. .+|++++.|+.|++||+++.+....+..+      ...+.+++|+|++ .++++++.|+   .|++||
T Consensus       168 v~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d  246 (416)
T 2pm9_A          168 VISLAWNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD  246 (416)
T ss_dssp             CCEEEECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred             eeEEEeCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence            99999999743 48999999999999999998877766655      7889999999997 6899999998   999999


Q ss_pred             CCCC-cEEEEEE--ecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC-CE
Q psy6984         222 LNDG-KHLHTLV--HNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN-RQ  296 (380)
Q Consensus       222 ~~~~-~~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~  296 (380)
                      ++++ ..+..+.  |...+.+++|+| ++.+..      ....++.+.+|++..++....+..|...|.+++|+|++ ++
T Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~------s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  320 (416)
T 2pm9_A          247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL------SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDL  320 (416)
T ss_dssp             TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE------EEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTE
T ss_pred             CCCCCCCcEEeecCccCceeEEEeCCCCCCeEE------EEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCE
Confidence            9986 4555554  788999999999 655422      23346789999999998888888888999999999999 89


Q ss_pred             EEEeeCCCcEEEEecccceeeeEeec---ccc---eEEEee--------Cccc-ccccCCCCCCceEEEEEecCCCEEEE
Q psy6984         297 IVSSSRDKTIKLWNTLAHCKFTIVDL---ETK---KMVEEL--------RPDV-VSQSTKADPPMCLSLAWSTDGQTLFA  361 (380)
Q Consensus       297 l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~---~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~  361 (380)
                      |++++.||.|++|++...........   ...   ......        +... .......+...+..++|+|||++|++
T Consensus       321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~  400 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI  400 (416)
T ss_dssp             EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred             EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence            99999999999999865432211100   000   000000        0000 00111224555678999999999999


Q ss_pred             EeeCCeEEEEEeee
Q psy6984         362 GYSDNTIRVWQVSV  375 (380)
Q Consensus       362 g~~dg~v~iw~~~~  375 (380)
                      |+.||.|+||++.+
T Consensus       401 ~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          401 TPDGKGVSITNPKI  414 (416)
T ss_dssp             CTTSSCBCCBCCCC
T ss_pred             eCCCCeEEEEEecc
Confidence            99999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=6.4e-42  Score=307.24  Aligned_cols=336  Identities=15%  Similarity=0.197  Sum_probs=253.8

Q ss_pred             CcceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcc-cccccccCCCcceEEEEEccC----
Q psy6984           1 MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG-VPQKRLKGHSHFISDIVLSSD----   75 (380)
Q Consensus         1 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~----   75 (380)
                      |......+...+.+|.+.|++++|+|   ++|++|+.||+|++|++........ .....+.+|...|.+++|+|+    
T Consensus         1 m~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   77 (397)
T 1sq9_A            1 MSKVFIATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD   77 (397)
T ss_dssp             --CEEEEEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred             CchhhhhhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccC
Confidence            66667788899999999999999987   5899999999999999876431111 123456789999999999999    


Q ss_pred             C---CEEEEEeCCCcEEEEECCCCce-----eeeeccc-----CCCeEEEEEe----CCCCE-EEEEeCCCcEEEEeCCC
Q psy6984          76 G---NYALSGSWDKTLRLWDLAAGKT-----TRRFEDH-----TKDVLSVAFS----VDNRQ-IVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        76 ~---~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~h-----~~~v~~~~~~----~~~~~-~~s~~~d~~v~iwd~~~  137 (380)
                      +   ++|++++.|+.|++||+.+++.     ...+..|     ...|.+++|+    |++.. +++++.|+.|++||+..
T Consensus        78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            9   9999999999999999998886     7888888     5899999999    99999 99999999999999876


Q ss_pred             ------cceE------EEee-----CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC---C---cc
Q psy6984         138 ------HCKF------TIVE-----DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG---H---TG  194 (380)
Q Consensus       138 ------~~~~------~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~---~~  194 (380)
                            ....      ....     ..|...+.+++|+|++   +|++++.|+.|++||+++.+....+..   |   ..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~  234 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  234 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence                  3322      2221     4578889999999975   799999999999999999888888888   8   89


Q ss_pred             ceEEEEEcCCCCEEEEEcCC---CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984         195 YLNTVTVSPDGSLCASGGKD---MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH  271 (380)
Q Consensus       195 ~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (380)
                      .|.+++|+|++++|++++.|   +.|++||+.+++.+..+.....       +.                          
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~-------~~--------------------------  281 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-------SS--------------------------  281 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------------------------------
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc-------cc--------------------------
Confidence            99999999999999999999   9999999998876654422100       00                          


Q ss_pred             ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEE-eeCcccccccCCCCCCceEEE
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVE-ELRPDVVSQSTKADPPMCLSL  350 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  350 (380)
                       ......+.+...|.+++|+|++++|++++.||.|++||+..+..+..+......... .............|...|.++
T Consensus       282 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~  360 (397)
T 1sq9_A          282 -QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV  360 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred             -cccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence             000011234567899999999999999999999999998766544433210000000 000000000011236778999


Q ss_pred             EEecCC----------CEEEEEeeCCeEEEEEeeee
Q psy6984         351 AWSTDG----------QTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       351 ~~s~dg----------~~l~~g~~dg~v~iw~~~~~  376 (380)
                      +|+|+|          ++|++|+.||.|++|++..+
T Consensus       361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             EeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            999999          79999999999999998643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-41  Score=303.42  Aligned_cols=313  Identities=17%  Similarity=0.245  Sum_probs=236.9

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEE
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSG   82 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~   82 (380)
                      +..++...+.+|.+.|++++|+|+.+.+|++|+.||.|++|++......   ......+|...|.+++|+| ++++|+++
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---SFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---EEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---eeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            4567888999999999999999984489999999999999998754322   1223357999999999999 78999999


Q ss_pred             eCCCcEEEEECCCCceeeeecc---cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984          83 SWDKTLRLWDLAAGKTTRRFED---HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  159 (380)
                      +.|+.|++||+.+ +....+..   |...|.+++|+|+++.+++++.|+.|++||+... .... ..+|...|.+++|+|
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~-~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-EIFK-EKLHKAKVTHAEFNP  214 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-EEEE-EECSSSCEEEEEECS
T ss_pred             eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-EEEE-eccCCCcEEEEEECC
Confidence            9999999999986 44444443   3478999999999999999999999999998533 3322 347889999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCC----ceeeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEEec
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTN----CKLKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTLVHN  234 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  234 (380)
                      +++. +|++++.|+.|++||+++    ....... +|...|.+++|+| ++++|++++.|+.|++||+++++....+...
T Consensus       215 ~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  292 (383)
T 3ei3_B          215 RCDW-LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH  292 (383)
T ss_dssp             SCTT-EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred             CCCC-EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence            7643 799999999999999987    4444434 6899999999999 9999999999999999999887654333211


Q ss_pred             CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                      .         ...+.                     +.......+.....+..++|+|++++  +|+.||.|++||+..+
T Consensus       293 ~---------~~~~~---------------------~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~  340 (383)
T 3ei3_B          293 P---------HRQFQ---------------------HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG  340 (383)
T ss_dssp             C---------BCCCT---------------------TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred             c---------ccccc---------------------cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence            0         00000                     00000001112234567889999998  8999999999987554


Q ss_pred             eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ..+..           +..       ..+...+..++|+|+|++|++|+ ||.|+||++..
T Consensus       341 ~~~~~-----------l~~-------~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          341 GLVHQ-----------LRD-------PNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CEEEE-----------ECB-------TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ceeee-----------ecC-------CCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            43222           211       11233455679999999999996 99999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-41  Score=332.16  Aligned_cols=346  Identities=9%  Similarity=0.086  Sum_probs=255.6

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      ...||.+.|++++|+|+ +.+||+|+.||+|++|+.....      ......|...|.+++|+| +++|++++.|+.|++
T Consensus        12 ~~~gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~------~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~l   83 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVE------VVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYV   83 (902)
T ss_dssp             EEEECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCE------EEEECSSCCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred             cccCCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcE------EEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence            34589999999999998 6899999999999999865321      111234778899999999 889999999999999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE----------eeCCCcCcEEEEEEccC
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI----------VEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~----------~~~~~~~~v~~~~~~~~  160 (380)
                      ||+.+++.+..+. |...|.+++|+|+++++++|+.||.|++||+........          ...+|...|.+++|+|+
T Consensus        84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             EECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            9999999888875 668899999999999999999999999999876543211          12568889999999996


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC------------------ccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH------------------TGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      .. ..+++++.|+.| +||+++.+....+..|                  ...|++++|+|+|++|++++.|+.|++||+
T Consensus       163 ~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          163 DI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             EE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CC-CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            42 368899999999 9999998776665544                  467999999999999999999999999999


Q ss_pred             CCCcEEEE--EE-----------------ecCceEEEEeecC----ccc-ceee-------------eee----------
Q psy6984         223 NDGKHLHT--LV-----------------HNDIITALCFSPN----RSF-QKIK-------------LDI----------  255 (380)
Q Consensus       223 ~~~~~~~~--~~-----------------~~~~i~~~~~~~~----~~~-~~~~-------------~~~----------  255 (380)
                      ++++.+..  +.                 +...|.+++|++.    +.. ....             ...          
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence            99887653  21                 2346889999642    111 0000             000          


Q ss_pred             -----------------------------------------------eeeccccceEEEEcCCceeeee-------ee--
Q psy6984         256 -----------------------------------------------SRTLQKSNLILYPINHGKMETP-------FF--  279 (380)
Q Consensus       256 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~-------~~--  279 (380)
                                                                     .....++.+.+|++..+.....       +.  
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                                                           0001124567777655532111       11  


Q ss_pred             --------------------------------ccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceE
Q psy6984         280 --------------------------------SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM  327 (380)
Q Consensus       280 --------------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~  327 (380)
                                                      ++...+.+++|+|++++|+||+.|++|++||+..+..      .+...
T Consensus       401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~------~~~~~  474 (902)
T 2oaj_A          401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI------QDNAS  474 (902)
T ss_dssp             TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT------TTTBC
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc------cCCce
Confidence                                            1222344456688999999999999999999865421      10000


Q ss_pred             EEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         328 VEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      .. .  +........|...|.+++|+|||++||+|+.||+|++|++...
T Consensus       475 ~~-~--~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~  520 (902)
T 2oaj_A          475 FE-V--NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVN  520 (902)
T ss_dssp             EE-E--EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEEC
T ss_pred             EE-e--echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCc
Confidence            00 0  0000011256678999999999999999999999999999754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.3e-41  Score=341.67  Aligned_cols=358  Identities=21%  Similarity=0.347  Sum_probs=283.5

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ...+.+|.+.|++++|+|+ +.++++|+.||+|++|++....     ....+.+|...|.+++|+|++++|++++.|+.|
T Consensus       608 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v  681 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV  681 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeE
Confidence            3467899999999999998 7899999999999999986543     234567999999999999999999999999999


Q ss_pred             EEEECCCCceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          89 RLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      ++||+.+++.+..+..|...|.+++|+|  ++..+++++.|+.|++||+.+....... .+|...|.+++|+|+++  .+
T Consensus       682 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~--~l  758 (1249)
T 3sfz_A          682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDE--LL  758 (1249)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTT--EE
T ss_pred             EEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCC--EE
Confidence            9999999999999999999999999999  5568999999999999998876655443 47999999999999764  79


Q ss_pred             EEEeCCCeEEEEeCCCceeeEe-------------------------------------------------------eeC
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKIN-------------------------------------------------------HSG  191 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~-------------------------------------------------------~~~  191 (380)
                      ++++.|+.|++||+.+.+....                                                       ..+
T Consensus       759 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~  838 (1249)
T 3sfz_A          759 ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG  838 (1249)
T ss_dssp             EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECS
T ss_pred             EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCC
Confidence            9999999999999875432211                                                       126


Q ss_pred             CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeee----------------
Q psy6984         192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLD----------------  254 (380)
Q Consensus       192 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~----------------  254 (380)
                      |...+.+++|+|+++++++++.|+.|++||+.++..+..+ .|...+.+++|+|++........                
T Consensus       839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~  918 (1249)
T 3sfz_A          839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS  918 (1249)
T ss_dssp             SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceee
Confidence            7788999999999999999999999999999999887766 47788999999998654221100                


Q ss_pred             ---------------------------------------------------------eeeeccccceEEEEcCCceeeee
Q psy6984         255 ---------------------------------------------------------ISRTLQKSNLILYPINHGKMETP  277 (380)
Q Consensus       255 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  277 (380)
                                                                               +.....++.+.+|+...++....
T Consensus       919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~  998 (1249)
T 3sfz_A          919 AIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS  998 (1249)
T ss_dssp             SSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE
T ss_pred             eecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee
Confidence                                                                     01112345677788777777777


Q ss_pred             eeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc--------------------cceEEEeeCccccc
Q psy6984         278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE--------------------TKKMVEELRPDVVS  337 (380)
Q Consensus       278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~  337 (380)
                      +..|...|.+++|+|++++|++++.||.|++|+...+.........                    ..-.+.........
T Consensus       999 ~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A          999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp             CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence            7788889999999999999999999999999998765432211000                    00001111111111


Q ss_pred             ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         338 QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       338 ~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      .....+...+.+++|+|||++|++++.||.|++|++..
T Consensus      1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A         1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp             EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSS
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            12234667788999999999999999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-40  Score=325.89  Aligned_cols=354  Identities=20%  Similarity=0.281  Sum_probs=279.3

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      +++...+.+|.+.|++++|+|+ +.+|++++.||.|++|++....     ....+.+|...|.+++|+|++++|++++.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d   76 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDD   76 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred             cccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCCEEEEEeCC
Confidence            3467889999999999999998 6899999999999999976432     234567899999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc-CCCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNP  164 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  164 (380)
                      |.|++||+.+++....+..|...|.+++|+|++..+++++.|+.|++||+...........+|...|.+++|+| ++  .
T Consensus        77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~  154 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--S  154 (814)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE--E
T ss_pred             CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC--C
Confidence            99999999999999999999999999999999999999999999999998776454455567889999999999 43  3


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEeeeCC-ccceEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEE
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINHSGH-TGYLNTVTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITAL  240 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~  240 (380)
                      .|++++.|+.|++||+.+.........+ ...+..++|+|  +++++++++.|+.|++||+.+++.+..+. |...+..+
T Consensus       155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  234 (814)
T 3mkq_A          155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA  234 (814)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            7899999999999999877665555544 47899999999  99999999999999999999998887775 77889999


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE-EEEeeCCCcEEEEecccceeeeE
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTI  319 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~  319 (380)
                      +|+|++.+..      ....++.+.+|+...++....+..+...+++++|+|+++. +++++.|+.+.+|+.........
T Consensus       235 ~~~~~~~~l~------~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (814)
T 3mkq_A          235 VFHPTLPIII------SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLS  308 (814)
T ss_dssp             EECSSSSEEE------EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEE
T ss_pred             EEcCCCCEEE------EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeE
Confidence            9999987432      2335688999999998888888788889999999999873 24445577788898754433222


Q ss_pred             eecccceEEEe-------------e------Ccc----cccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         320 VDLETKKMVEE-------------L------RPD----VVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       320 ~~~~~~~~~~~-------------~------~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      +..........             .      ...    ........+...+.+++|+|+|++|++++ ||.+.+|++.
T Consensus       309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~  385 (814)
T 3mkq_A          309 LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL  385 (814)
T ss_dssp             ECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred             ECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence            22111111100             0      000    00000122333456788888888888776 8888888753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.8e-41  Score=302.85  Aligned_cols=330  Identities=13%  Similarity=0.118  Sum_probs=255.7

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT   98 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   98 (380)
                      +++++|+|+ +++|++++.||.+++|++.....     ...+..| ..+....+++++++|++|+.|+.|++||+.+++.
T Consensus        59 ~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           59 GKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDG-----SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CTTCEEEEE-ETTEEEEEETTEEEEEECCSEET-----TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred             ccceeeeec-CCeEEEEEcCCcEEEEEecccce-----eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence            447889997 68999999999999999764322     2223444 4455567899999999999999999999999988


Q ss_pred             eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984          99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW  178 (380)
Q Consensus        99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw  178 (380)
                      ...+..|...|.+++|+|+++++++++.|+.|++||+........+ .+|...|.+++|+|++.  +|++++.|+.|++|
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iw  208 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGR--NVLSASLDGTIRLW  208 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEe
Confidence            8888899999999999999999999999999999998776554444 47899999999999754  79999999999999


Q ss_pred             eCCCceeeEeeeC---CccceEE---------------------EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE--
Q psy6984         179 NLTNCKLKINHSG---HTGYLNT---------------------VTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV--  232 (380)
Q Consensus       179 d~~~~~~~~~~~~---~~~~i~~---------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--  232 (380)
                      |+++.+....+..   |...+.+                     ++|+|+++++++++.|+.|++||+++++.+..+.  
T Consensus       209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  288 (420)
T 3vl1_A          209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK  288 (420)
T ss_dssp             ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred             ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence            9998877766653   3334444                     4457899999999999999999999998877764  


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee-eeeeec-cccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM-ETPFFS-LFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      +...+.+++|+|++...     +.....++.+.+|++..++. ...+.. +...+.++ +.+++++|++++.||.|++|+
T Consensus       289 ~~~~v~~~~~~~~~~~~-----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          289 FTCSCNSLTVDGNNANY-----IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             TSSCEEEEEECSSCTTE-----EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTEEEEEEE
T ss_pred             cCCCceeEEEeCCCCCE-----EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCccEEEEe
Confidence            56789999999997621     22233568899999988653 444555 44556666 567889999999999999999


Q ss_pred             cccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC---EEEEEeeCCeEEEEEeee
Q psy6984         311 TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ---TLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~g~~dg~v~iw~~~~  375 (380)
                      +........        +......   .....+...+.+++|+|+++   .|++.+.+|.+.+|+++-
T Consensus       363 ~~~~~~~~~--------~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          363 ISDPESERP--------AIEFETP---TFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ECCTTCCSC--------EECTTSC---EEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccCCCCCcc--------ceeccCc---cEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            754321110        1101100   01123455678999999999   777777899999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-41  Score=304.45  Aligned_cols=254  Identities=25%  Similarity=0.471  Sum_probs=222.1

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++.++..++.+|.+.|++++|+|+ +++|++|+.||+|++||+....     ....+.+|...|.+++|+|++++|++|+
T Consensus       138 ~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~-----~~~~~~~h~~~V~~v~~~p~~~~l~s~s  211 (410)
T 1vyh_C          138 ETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFE-----CIRTMHGHDHNVSSVSIMPNGDHIVSAS  211 (410)
T ss_dssp             TTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSC-----EEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc-----eeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            344567889999999999999997 6899999999999999986432     2345679999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC-
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ-  162 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  162 (380)
                      .|+.|++||+.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||+........ ..+|...|.+++|+|+.. 
T Consensus       212 ~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~  290 (410)
T 1vyh_C          212 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHVVECISWAPESSY  290 (410)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECCSCGG
T ss_pred             CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-ecCCCceEEEEEEcCcccc
Confidence            999999999999999999999999999999999999999999999999999877655443 357889999999998632 


Q ss_pred             -----------------CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q psy6984         163 -----------------NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       163 -----------------~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  225 (380)
                                       ..+|++|+.|+.|++||++++.....+.+|...|.+++|+|+|++|++|+.|+.|++||+.++
T Consensus       291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                             458999999999999999999888888999999999999999999999999999999998765


Q ss_pred             cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984         226 KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       226 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      +.+..                                               +..|...|++++|+|++++|++|+.||+
T Consensus       371 ~~~~~-----------------------------------------------~~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          371 RCMKT-----------------------------------------------LNAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             CCCEE-----------------------------------------------EECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             ceEEE-----------------------------------------------EcCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            43222                                               1234456889999999999999999999


Q ss_pred             EEEEec
Q psy6984         306 IKLWNT  311 (380)
Q Consensus       306 v~iw~~  311 (380)
                      |++|+.
T Consensus       404 i~vW~~  409 (410)
T 1vyh_C          404 VKVWEC  409 (410)
T ss_dssp             EEEEC-
T ss_pred             EEEEeC
Confidence            999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-41  Score=292.31  Aligned_cols=251  Identities=23%  Similarity=0.406  Sum_probs=220.6

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      ...+...+.||...|++++++|+ ..++++++.|++|++||+....     ....+..|...+.+++|+|++++|++|+.
T Consensus        69 ~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~g~~  142 (321)
T 3ow8_A           69 RLDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGK-----QIKSIDAGPVDAWTLAFSPDSQYLATGTH  142 (321)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCTTCCCCEEECTTSSEEEEECT
T ss_pred             CeeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCC-----EEEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence            34566789999999999999998 6799999999999999986532     23345677788999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      |+.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+...... ..+|...|.+++|+|+++  
T Consensus       143 dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spd~~--  219 (321)
T 3ow8_A          143 VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQ--  219 (321)
T ss_dssp             TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCCCEEEECTTSC--
T ss_pred             CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-EcccCCceeEEEEcCCCC--
Confidence            99999999999999998999999999999999999999999999999999887655444 357888999999999764  


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeec
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSP  244 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~  244 (380)
                      +|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+             
T Consensus       220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~-------------  286 (321)
T 3ow8_A          220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF-------------  286 (321)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-------------
T ss_pred             EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE-------------
Confidence            7999999999999999998888888999999999999999999999999999999999887654332             


Q ss_pred             CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                                                        ..|...|++++|+|++++|++++.||+|++||.
T Consensus       287 ----------------------------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          287 ----------------------------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ----------------------------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             ----------------------------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence                                              233456788999999999999999999999984

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-42  Score=311.29  Aligned_cols=340  Identities=12%  Similarity=0.172  Sum_probs=251.3

Q ss_pred             eeEEeEEe-cCcccceEEEEeCC-CCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984           5 TLQLRGTL-NGHNGWVTQIATNP-KFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         5 ~~~~~~~~-~~h~~~v~~i~~~~-~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      +.++..++ .+|.+.|++++|+| + +.+|++|+.||+|++|++...............+|...|.+++|+|++++|++|
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence            45677788 89999999999999 6 789999999999999998641111001111122689999999999999999999


Q ss_pred             eCCCcEEEEECC---CCceeeeecc------------cCCCeEEEE--EeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984          83 SWDKTLRLWDLA---AGKTTRRFED------------HTKDVLSVA--FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        83 ~~d~~i~vwd~~---~~~~~~~~~~------------h~~~v~~~~--~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~  145 (380)
                      +.|+.|++||+.   +++.......            +...+.++.  +++++..+++++.|+.|++||+........+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            999999999994   4544433321            455677777  56889999999999999999998776655554


Q ss_pred             CC-CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCccceEEEEEc----CCCCEEEEEcCCCcEEE
Q psy6984         146 DG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTGYLNTVTVS----PDGSLCASGGKDMNAML  219 (380)
Q Consensus       146 ~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~~~~~d~~i~i  219 (380)
                      .. |...|.+++|+|++  .+|++++.|+.|++||+++.+....+. .|...|.+++++    |++++|++++.|+.|++
T Consensus       210 ~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          210 NSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             CCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             cCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence            32 78899999999975  479999999999999999988776654 677889999665    56889999999999999


Q ss_pred             EECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec--cccceeEEEEeecCCE
Q psy6984         220 WDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS--LFRDVLSVAFSVDNRQ  296 (380)
Q Consensus       220 ~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~  296 (380)
                      ||+++++.+..+. +...+..+.|+|++....                        ...+.+  +...|.+++|+ ++++
T Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------------~~~~~~~~~~~~v~~l~~~-~~~~  342 (437)
T 3gre_A          288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE------------------------ELNFCGIRSLNALSTISVS-NDKI  342 (437)
T ss_dssp             EETTTTEEEEEEESSSSCCCGGGGSCBCSSGG------------------------GCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred             EEcCCCcEEEEEEcCCCCCccceecccccccc------------------------cceecccccCCceEEEEEC-CceE
Confidence            9999998877764 455566666666543210                        001222  56679999999 8899


Q ss_pred             EEEeeCCCcEEEEecccceeeeEeecccce--------------E-EEe--eCcccccccCCCCCCceEEEEEecC--CC
Q psy6984         297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKK--------------M-VEE--LRPDVVSQSTKADPPMCLSLAWSTD--GQ  357 (380)
Q Consensus       297 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--------------~-~~~--~~~~~~~~~~~~~~~~~~~~~~s~d--g~  357 (380)
                      |++|+.||.|++||+..+.....+......              . ...  ............|...|.+++|+++  +.
T Consensus       343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~  422 (437)
T 3gre_A          343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP  422 (437)
T ss_dssp             EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred             EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence            999999999999998776654433221000              0 000  0000000112347788999999998  78


Q ss_pred             EEEEEeeCCeEEEEE
Q psy6984         358 TLFAGYSDNTIRVWQ  372 (380)
Q Consensus       358 ~l~~g~~dg~v~iw~  372 (380)
                      +|++|+.||.|+||+
T Consensus       423 ~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          423 LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEETTSCEEEEC
T ss_pred             EEEEEcCCceEEEeC
Confidence            999999999999995

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.8e-41  Score=294.77  Aligned_cols=247  Identities=19%  Similarity=0.243  Sum_probs=204.3

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .|...|++++|+|+  ..|++|+.||+|++||+....... .......+|...|++++|+|+|++|++|+.|+.|++||+
T Consensus        80 ~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~-~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           80 QTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLI-VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             EESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCE-EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCcee-EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            45678999999986  489999999999999987643221 112235689999999999999999999999999999999


Q ss_pred             CCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEe-eCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          94 AAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        94 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                      .+++.+..+.+|...|.+++|+|++. .+++++.|++|++||+........+ ...+...+.+++|+|.+. .+|++|+.
T Consensus       157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~sg~~  235 (344)
T 4gqb_B          157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS-EVFVFGDE  235 (344)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT-TEEEEEET
T ss_pred             CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC-cceEEecc
Confidence            99999999999999999999999885 7899999999999998876554443 234556789999999654 47899999


Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccce
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQK  250 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  250 (380)
                      |+.|++||+++.+....+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++....                    
T Consensus       236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--------------------  295 (344)
T 4gqb_B          236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--------------------  295 (344)
T ss_dssp             TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--------------------
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--------------------
Confidence            9999999999999888899999999999999998 5799999999999999877643211                    


Q ss_pred             eeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEecc
Q psy6984         251 IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~  312 (380)
                                                  .+|...|.+++|+|+++ +|+||+.||+|++|++.
T Consensus       296 ----------------------------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          296 ----------------------------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             ----------------------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             ----------------------------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence                                        23455688899999886 56799999999999863

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.3e-40  Score=287.78  Aligned_cols=248  Identities=23%  Similarity=0.366  Sum_probs=207.9

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|+++++++|+.|+.|++||..+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~   86 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc-eeeEeeeCCccceEEEEEcC-CCCEEEEEcCCC
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC-KLKINHSGHTGYLNTVTVSP-DGSLCASGGKDM  215 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~  215 (380)
                      ......+ .+|...|.+++|+|+++  +|++++.|++|++||+++. .....+.+|...|.+++|+| ++.+|++|+.|+
T Consensus        87 ~~~~~~~-~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~  163 (304)
T 2ynn_A           87 GEKVVDF-EAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (304)
T ss_dssp             CCEEEEE-ECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred             CcEEEEE-eCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence            6655444 47999999999999754  7999999999999999876 44556788999999999999 678999999999


Q ss_pred             cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee--c
Q psy6984         216 NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV--D  293 (380)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~  293 (380)
                      .|++||+..+.....+.                                              ..+...+..++|+|  +
T Consensus       164 ~v~iwd~~~~~~~~~~~----------------------------------------------~~~~~~v~~~~~~~~~~  197 (304)
T 2ynn_A          164 TVKVWSLGQSTPNFTLT----------------------------------------------TGQERGVNYVDYYPLPD  197 (304)
T ss_dssp             EEEEEETTCSSCSEEEE----------------------------------------------CCCTTCEEEEEECCSTT
T ss_pred             eEEEEECCCCCccceec----------------------------------------------cCCcCcEEEEEEEEcCC
Confidence            99999987654221111                                              01123455667765  7


Q ss_pred             CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      +++|++|+.|++|++||+..+..+.           .+         ..|...+..++|+|++++|++|+.||.|++||+
T Consensus       198 ~~~l~s~s~D~~i~iWd~~~~~~~~-----------~~---------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          198 KPYMITASDDLTIKIWDYQTKSCVA-----------TL---------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEE-----------EE---------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             CCEEEEEcCCCeEEEEeCCCCccce-----------ee---------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            7899999999999999875543222           11         234556889999999999999999999999997


Q ss_pred             e
Q psy6984         374 S  374 (380)
Q Consensus       374 ~  374 (380)
                      .
T Consensus       258 ~  258 (304)
T 2ynn_A          258 S  258 (304)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=8.8e-41  Score=340.58  Aligned_cols=338  Identities=24%  Similarity=0.364  Sum_probs=279.6

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEE
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALS   81 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s   81 (380)
                      .+.+...++.+|.+.|++++|+|+ +++|++++.||+|++||+....     ....+.+|...|.++.|+|  ++.++++
T Consensus       645 ~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s  718 (1249)
T 3sfz_A          645 ETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNHLLLAT  718 (1249)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             CCCCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEECCCCc-----eEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence            445677889999999999999998 6899999999999999987542     2345678999999999999  5568999


Q ss_pred             EeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE-------------------
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT-------------------  142 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~-------------------  142 (380)
                      |+.|+.|++||+.+++....+.+|...|.+++|+|+++.+++++.|+.|++||+.......                   
T Consensus       719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1249)
T 3sfz_A          719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE  798 (1249)
T ss_dssp             EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred             EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999964321110                   


Q ss_pred             -----------------------------------------------------------------------------Eee
Q psy6984         143 -----------------------------------------------------------------------------IVE  145 (380)
Q Consensus       143 -----------------------------------------------------------------------------~~~  145 (380)
                                                                                                   ...
T Consensus       799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~  878 (1249)
T 3sfz_A          799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC  878 (1249)
T ss_dssp             CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence                                                                                         011


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-------------------------------------------
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-------------------------------------------  182 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-------------------------------------------  182 (380)
                      .+|...|.+++|+|++.  .+++++.|+.|++||+.+                                           
T Consensus       879 ~~h~~~v~~v~~spdg~--~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  956 (1249)
T 3sfz_A          879 RGHLSWVHGVMFSPDGS--SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI  956 (1249)
T ss_dssp             CCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred             CCCccceEEEEECCCCC--EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence            35667788888888654  688888888888888431                                           


Q ss_pred             ------------------------------------ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         183 ------------------------------------CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       183 ------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                                                          .+......+|...|.+++|+|+|+++++++.|+.|++||+.+++
T Consensus       957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A          957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp             EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred             EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                11222334688889999999999999999999999999999998


Q ss_pred             EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984         227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI  306 (380)
Q Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  306 (380)
                      ......+...+.+++++|++.+.       ....++.+.+|++.+++....+..|...|.+++|+|++++|++++.||+|
T Consensus      1037 ~~~~~~~~~~v~~~~~~~~~~l~-------~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v 1109 (1249)
T 3sfz_A         1037 YVFLQAHQETVKDFRLLQDSRLL-------SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1109 (1249)
T ss_dssp             EECCBCCSSCEEEEEECSSSEEE-------EEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCC
T ss_pred             eEEEecCCCcEEEEEEcCCCcEE-------EEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcE
Confidence            88777788999999999976532       22356789999999999888888899999999999999999999999999


Q ss_pred             EEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         307 KLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       307 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      ++|+...+...           .         ....|...+.+++|+|||++|++|+.||.|++|++...
T Consensus      1110 ~iwd~~~~~~~-----------~---------~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1110 KIWSFDLLSPL-----------H---------ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp             CEECSSSSSCS-----------B---------CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred             EEEECCCccee-----------e---------eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            99986433211           1         12345667899999999999999999999999998643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=287.68  Aligned_cols=298  Identities=19%  Similarity=0.250  Sum_probs=252.5

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      ....|.+|.+.|++++|+|+ +++|++++.||.|++|++....     ....+.+|...|.+++|+|++++|++++.|+.
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~   97 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS   97 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred             ccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            44678999999999999997 7899999999999999986532     23457789999999999999999999999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcce---E-------EEeeCCCcC--
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCK---F-------TIVEDGHSD--  150 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~---~-------~~~~~~~~~--  150 (380)
                      |++||+.+++....+. +...+.+++|+|++..+++++.+     +.+++||+.....   .       ......|..  
T Consensus        98 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B           98 IKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             EEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred             EEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence            9999999999888887 88899999999999999999999     9999999643321   0       011113333  


Q ss_pred             cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984         151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      .+.+++|+|++.  +|++++.|+.|++||+++ .+....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus       177 ~~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          177 AATVAGWSTKGK--YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK  254 (369)
T ss_dssp             CEEEEEECGGGC--EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ceeEEEEcCCCC--EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence            799999999764  789999999999999998 67777788899999999999999999999999999999999999999


Q ss_pred             EEEecCceEEEEeecCcccceeeeeee--------eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDIS--------RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS  301 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  301 (380)
                      .+.+...+..++|+|++.+........        .......+.+|+...++....+..|...|.+++|+|++++|++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  334 (369)
T 3zwl_B          255 KYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG  334 (369)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence            999999999999999987654432110        011122688999999988888888999999999999999999999


Q ss_pred             CCCcEEEEecccc
Q psy6984         302 RDKTIKLWNTLAH  314 (380)
Q Consensus       302 ~dg~v~iw~~~~~  314 (380)
                      .||.|++|++..+
T Consensus       335 ~dg~v~iw~~~~~  347 (369)
T 3zwl_B          335 EDGFIRLHHFEKS  347 (369)
T ss_dssp             TTSEEEEEEECHH
T ss_pred             CCCeEEEEECccc
Confidence            9999999987543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-39  Score=308.93  Aligned_cols=333  Identities=16%  Similarity=0.266  Sum_probs=257.2

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc---ceEEEEEccC-CCEEEEE
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH---FISDIVLSSD-GNYALSG   82 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~s~   82 (380)
                      +....+.+|.+.|+++.|+|+.+.++++++.||.|++||+....     ....+.+|..   .|.+++|+|+ +++|+++
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  225 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFVITV  225 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eeeeecccCCCCceEEEEEECCCCCCEEEEE
Confidence            35678889999999999999854589999999999999975432     2345678888   9999999999 9999999


Q ss_pred             eCCCcEEEEECCCCceeeee-c---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCC---CcCcEEEE
Q psy6984          83 SWDKTLRLWDLAAGKTTRRF-E---DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG---HSDWVSCV  155 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~  155 (380)
                      +.|+.|++||+.+++.+..+ .   .|...|.+++|+ ++..+++++.|+.+++||+............   +...+.++
T Consensus       226 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  304 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV  304 (615)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred             eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence            99999999999999999988 6   899999999999 9999999999999999998876555444322   24567777


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC-------------------------------
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD-------------------------------  204 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-------------------------------  204 (380)
                      .+. +  ...+++++.|+.|++||+.+.+....+.+|...|.+++| |+                               
T Consensus       305 ~~~-~--~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~  380 (615)
T 1pgu_A          305 VAT-G--NGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN  380 (615)
T ss_dssp             EEE-E--TTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred             EeC-C--CCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence            775 3  347899999999999999876665555555544444443 22                               


Q ss_pred             --CC-------------------------------------------------------------------------EEE
Q psy6984         205 --GS-------------------------------------------------------------------------LCA  209 (380)
Q Consensus       205 --~~-------------------------------------------------------------------------~l~  209 (380)
                        +.                                                                         +++
T Consensus       381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  460 (615)
T 1pgu_A          381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA  460 (615)
T ss_dssp             CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred             CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEE
Confidence              33                                                                         344


Q ss_pred             EEcC-CCcEEEEECCCCcEE-EEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec-cccce
Q psy6984         210 SGGK-DMNAMLWDLNDGKHL-HTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS-LFRDV  285 (380)
Q Consensus       210 ~~~~-d~~i~i~d~~~~~~~-~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v  285 (380)
                      +++. |+.|++||+..++.. ..+ .+...+.+++|+|++.+..      ....++.+.+|++..++....+.. |...|
T Consensus       461 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~------~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  534 (615)
T 1pgu_A          461 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIA------AGDVMGKILLYDLQSREVKTSRWAFRTSKI  534 (615)
T ss_dssp             EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEE------EEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEE------EcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence            4444 555555555444332 111 3567788888988876533      233578899999999988887777 88899


Q ss_pred             eEEEEee----------cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecC
Q psy6984         286 LSVAFSV----------DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD  355 (380)
Q Consensus       286 ~~~~~s~----------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  355 (380)
                      .+++|+|          ++++|++++.||.|++|++..+.          +.+..         ...|...|.+++|+|+
T Consensus       535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~---------~~~h~~~v~~l~~s~~  595 (615)
T 1pgu_A          535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----------KIIKA---------LNAHKDGVNNLLWETP  595 (615)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT----------CCEEE---------TTSSTTCEEEEEEEET
T ss_pred             eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc----------eechh---------hhcCccceEEEEEcCC
Confidence            9999999          99999999999999999875431          11111         2345667899999999


Q ss_pred             CCEEEEEeeCCeEEEEEeee
Q psy6984         356 GQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       356 g~~l~~g~~dg~v~iw~~~~  375 (380)
                      |+ |++++.||.|++|++.+
T Consensus       596 ~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          596 ST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             TE-EEEEETTSCEEEEEEC-
T ss_pred             CC-eEEecCCceEEEEeeec
Confidence            99 99999999999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.9e-42  Score=310.74  Aligned_cols=312  Identities=18%  Similarity=0.205  Sum_probs=225.6

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~   86 (380)
                      +.....+|...|++|+|+|..+++||+|+.||+|+|||+......   ....+.+|...|++++|+| ++++|++|+.||
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---EEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            445667899999999999977889999999999999998654321   2234678999999999998 789999999999


Q ss_pred             cEEEEECCCCceeeeecc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          87 TLRLWDLAAGKTTRRFED--HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      .|++||++++........  +...+.+++|+|++.++++|+.|+.|++||+.....  ....+|...|.+++|+|++. .
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~--~~~~~h~~~v~~v~~~p~~~-~  264 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL--WNLRMHKKKVTHVALNPCCD-W  264 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC--CCSBCCSSCEEEEEECTTCS-S
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee--EEEecccceEEeeeecCCCc-e
Confidence            999999987654443333  334578999999999999999999999999865432  22357899999999999865 3


Q ss_pred             EEEEEeCCCeEEEEeCCCceee---EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEE
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLK---INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITAL  240 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~  240 (380)
                      +|++++.|+.|++||+++.+..   ....+|...|++++|+|+|++|++++.|+.|++||+.+++....+. +...    
T Consensus       265 ~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~----  340 (435)
T 4e54_B          265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR----  340 (435)
T ss_dssp             EEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC----
T ss_pred             EEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc----
Confidence            7889999999999999875432   2335788999999999999999999999999999998876544432 1100    


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEecccceeeeE
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTI  319 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~  319 (380)
                            .....                     ......+........+.+++++..++.++ .++.|++||...+..   
T Consensus       341 ------~~~~~---------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~---  390 (435)
T 4e54_B          341 ------HFQHL---------------------TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM---  390 (435)
T ss_dssp             ------CCSSS---------------------CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE---
T ss_pred             ------ccccc---------------------eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE---
Confidence                  00000                     00000011112233455566666555444 446799998654432   


Q ss_pred             eecccceEEEeeCcccccccCCCCCCceEEE-EEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         320 VDLETKKMVEELRPDVVSQSTKADPPMCLSL-AWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                              +..+.        ..+...|.++ +|+|+|++|++|+ |+.|+||++..+
T Consensus       391 --------~~~l~--------~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          391 --------MCQLY--------DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             --------EEEEC--------CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             --------EEEEe--------CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence                    22111        1233345555 6999999999876 889999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-40  Score=294.85  Aligned_cols=313  Identities=16%  Similarity=0.208  Sum_probs=237.9

Q ss_pred             EecCcccceEEEEeCCC---CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC----CCEEEEEe
Q psy6984          11 TLNGHNGWVTQIATNPK---FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD----GNYALSGS   83 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~---~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~~   83 (380)
                      ...+|.+.|++++|+|.   ....+++++.++.|++|++........+.......|...|.+++|+|+    +++|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            44599999999999983   345677777778999999875432221211122347788999999999    67999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEee--CCCcCcEEEEEEccC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVE--DGHSDWVSCVRFSPN  160 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~  160 (380)
                      .||.|++||+.+++.+..+..|...|.+++|+| ++..+++++.|+.|++||+..........  .+|...|.+++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            999999999999999999999999999999999 99999999999999999988766555442  578899999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEee----------------------------eCCccceEEEEEcCCCCEEEEEc
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINH----------------------------SGHTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~----------------------------~~~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      +.  +|++++.|+.|++||+++.+....+                            .+|...|.+++|+  ++++++++
T Consensus       173 ~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  248 (366)
T 3k26_A          173 GE--KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS  248 (366)
T ss_dssp             SS--EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred             CC--EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence            54  7999999999999999875433222                            2388899999998  77999999


Q ss_pred             CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         213 KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       213 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      .|+.|++||+.+++......          .+.               ..        .......+..+...|.+++|+|
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~----------~~~---------------~~--------~~~~~~~~~~~~~~v~~~~~s~  295 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKI----------KPS---------------ES--------NVTILGRFDYSQCDIWYMRFSM  295 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGC----------CTT---------------CC--------CEEEEEEEECSSCCSSCCCCEE
T ss_pred             cCCEEEEEeCCCcccccccc----------ccC---------------Cc--------chheeccccccCCcEEEEEEcC
Confidence            99999999987654210000          000               00        0011223445566788999999


Q ss_pred             c--CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEE
Q psy6984         293 D--NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRV  370 (380)
Q Consensus       293 ~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~i  370 (380)
                      +  +++|++|+.||.|++|++..+....       .....+.       ...+...+.+++|+|+|++|++|+.||.|++
T Consensus       296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~-------~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          296 DFWQKMLALGNQVGKLYVWDLEVEDPHK-------AKCTTLT-------HHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             CTTSSEEEEECTTSCEEEEECCSSSGGG-------CEEEEEC-------CTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCCcEEEEEecCCcEEEEECCCCCCcc-------ccceEEc-------ccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence            9  9999999999999999975432110       0111111       1122567899999999999999999999999


Q ss_pred             EEee
Q psy6984         371 WQVS  374 (380)
Q Consensus       371 w~~~  374 (380)
                      ||+.
T Consensus       362 wd~~  365 (366)
T 3k26_A          362 WDRL  365 (366)
T ss_dssp             EEC-
T ss_pred             EEec
Confidence            9974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-40  Score=294.83  Aligned_cols=319  Identities=16%  Similarity=0.173  Sum_probs=234.5

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeC---CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC---CCEEEE
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSR---DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD---GNYALS   81 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s   81 (380)
                      +...+.+|.+.|++++|+|+...++++++.   ||.|++|++.....    ......+|...|.+++|+|+   +++|++
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~   85 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL----KLLREIEKAKPIKCGTFGATSLQQRYLAT   85 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE----EEEEEEEESSCEEEEECTTCCTTTCCEEE
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc----cceeeecccCcEEEEEEcCCCCCCceEEE
Confidence            345567899999999999985456667776   99999999875431    11223478889999999998   699999


Q ss_pred             EeCCCcEEEEECCCCc-eeeeecccCCCeEEEEE------eCCCCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCC----c
Q psy6984          82 GSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSVAF------SVDNRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGH----S  149 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~------~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~----~  149 (380)
                      |+.|+.|++||+.+++ ....+..|...|.+++|      +|+++.+++++.|+.|++||+.... ...... .|    .
T Consensus        86 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~  164 (357)
T 3i2n_A           86 GDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENK  164 (357)
T ss_dssp             EETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCC
T ss_pred             ecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCC
Confidence            9999999999999888 88888999999999954      6899999999999999999987654 233322 22    3


Q ss_pred             CcEEEEE----EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcC---CCCEEEEEcCCCcEEEEEC
Q psy6984         150 DWVSCVR----FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP---DGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       150 ~~v~~~~----~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~  222 (380)
                      ..+.+++    |+|++  .++++++.|+.|++||+++.+... ...|...+.+++|+|   +++++++++.|+.|++||+
T Consensus       165 ~~v~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          165 RDCWTVAFGNAYNQEE--RVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCEEEEEEECCCC-CC--CEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CceEEEEEEeccCCCC--CEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence            3788888    45554  489999999999999999887643 456788999999999   9999999999999999997


Q ss_pred             CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEee
Q psy6984         223 NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSS  301 (380)
Q Consensus       223 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~  301 (380)
                      ++++....+.                                          ...+..+...|.+++|+|+++ +|++|+
T Consensus       242 ~~~~~~~~~~------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          242 RTQHPTKGFA------------------------------------------SVSEKAHKSTVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             EEEETTTEEE------------------------------------------EEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             cCCCccccee------------------------------------------eeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence            5432110000                                          001224456788999999998 899999


Q ss_pred             CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEE-EEeeCCeEEEEEeeeec
Q psy6984         302 RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF-AGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       302 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~g~~dg~v~iw~~~~~~  377 (380)
                      .||.|++|++..+......+........ ............|...|.+++|+|+|++|+ +|+.||.|++|++...+
T Consensus       280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          280 GAGGLHLWKYEYPIQRSKKDSEGIEMGV-AGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             TTSEEEEEEEECCSCC--CCTTSCCCCC-CCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CCCcEEEeecCCCcccccccCCCCcccc-ccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            9999999997654332211111100000 000000111234566789999999999998 79999999999997654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3e-39  Score=283.81  Aligned_cols=249  Identities=24%  Similarity=0.406  Sum_probs=212.5

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..+.+|...|++++|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+|+++++++++.|+.+++|++..
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~  128 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999765


Q ss_pred             cc---eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         138 HC---KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       138 ~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      ..   .......+|...|.++.|++++   .+++++.|+.|++||+++.+....+.+|...|.+++|+|+++++++|+.|
T Consensus       129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          129 REGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             CSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence            32   2333345899999999998864   48999999999999999998888889999999999999999999999999


Q ss_pred             CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      +.|++||+++++.+..+                                               ..|...|.+++|+|++
T Consensus       206 ~~v~~wd~~~~~~~~~~-----------------------------------------------~~h~~~v~~v~~~p~~  238 (340)
T 1got_B          206 ASAKLWDVREGMCRQTF-----------------------------------------------TGHESDINAICFFPNG  238 (340)
T ss_dssp             SCEEEEETTTCSEEEEE-----------------------------------------------CCCSSCEEEEEECTTS
T ss_pred             CcEEEEECCCCeeEEEE-----------------------------------------------cCCcCCEEEEEEcCCC
Confidence            99999999877543322                                               1234567889999999


Q ss_pred             CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         295 RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       295 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++|++|+.||+|++||+..+..+..+           .       .......+.+++|+|+|++|++|+.||.|++||+.
T Consensus       239 ~~l~s~s~d~~v~iwd~~~~~~~~~~-----------~-------~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          239 NAFATGSDDATCRLFDLRADQELMTY-----------S-------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEE-----------C-------CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEE-----------c-------cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence            99999999999999997654332211           1       01122357899999999999999999999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.4e-39  Score=306.70  Aligned_cols=353  Identities=16%  Similarity=0.203  Sum_probs=266.1

Q ss_pred             EEeEEecCcccc-eEEEEeCC--CCCCeEEEeeCCCeEEEeecCCCCCC---cccccccccCCCcceEEEEEccCCCEEE
Q psy6984           7 QLRGTLNGHNGW-VTQIATNP--KFPDTILSCSRDNTLIIWKLTRDDTN---YGVPQKRLKGHSHFISDIVLSSDGNYAL   80 (380)
Q Consensus         7 ~~~~~~~~h~~~-v~~i~~~~--~~~~~l~t~~~dg~v~vw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~   80 (380)
                      +....+.+|.+. |++++|+|  + +++|++++.||+|++|++......   .......+..|...|.+++|+|++++|+
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  132 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC  132 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence            567789999999 99999999  7 689999999999999998532000   0112345678999999999999999999


Q ss_pred             EEeCC----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcC---cE
Q psy6984          81 SGSWD----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD---WV  152 (380)
Q Consensus        81 s~~~d----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~---~v  152 (380)
                      +++.+    +.|++||  .++....+..|...|.+++|+|+++ .+++++.|+.+++||......... ..+|..   .|
T Consensus       133 ~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~v  209 (615)
T 1pgu_A          133 VVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-DRTHHKQGSFV  209 (615)
T ss_dssp             EEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-ECSSSCTTCCE
T ss_pred             EeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-ecccCCCCceE
Confidence            99988    6888888  5678888899999999999999998 899999999999999876655444 346877   89


Q ss_pred             EEEEEccC-CCCCEEEEEeCCCeEEEEeCCCceeeEee-e---CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984         153 SCVRFSPN-HQNPIIVSAGWDRMVKVWNLTNCKLKINH-S---GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       153 ~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                      .+++|+|+ +.  +|++++.|+.|++||+++.+....+ .   .|...|.++.|+ ++++|++++.|+.|++||+.+++.
T Consensus       210 ~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          210 RDVEFSPDSGE--FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             EEEEECSTTCC--EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEEEECCCCCC--EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            99999997 54  7999999999999999998877777 5   899999999999 999999999999999999999988


Q ss_pred             EEEEEec-----CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccc------------------
Q psy6984         228 LHTLVHN-----DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD------------------  284 (380)
Q Consensus       228 ~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  284 (380)
                      +..+...     ..+..+.+. ++.+      +.....++.+.+|+...++....+..|...                  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~-~~~~------l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i  359 (615)
T 1pgu_A          287 VQKWTLDKQQLGNQQVGVVAT-GNGR------IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRI  359 (615)
T ss_dssp             EEEEECCTTCGGGCEEEEEEE-ETTE------EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCE
T ss_pred             EEEEcCCCCcccCceeEEEeC-CCCe------EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeE
Confidence            8877654     556777775 3322      122234567777777766555555444444                  


Q ss_pred             ---------------eeEEEEeecCCEEEEeeCCCcEEEEecccce-----------------------eeeEeecccce
Q psy6984         285 ---------------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-----------------------KFTIVDLETKK  326 (380)
Q Consensus       285 ---------------v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~-----------------------~~~~~~~~~~~  326 (380)
                                     |.+++| ++++.|++++.|+.|++|+.....                       .+.+++..+.+
T Consensus       360 ~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  438 (615)
T 1pgu_A          360 MEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD  438 (615)
T ss_dssp             EETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence                           455555 446777777788888888764321                       11111111110


Q ss_pred             E-------------------------------EEeeCccccc-ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         327 M-------------------------------VEELRPDVVS-QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       327 ~-------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      .                               +......... .....+...+.+++|+|+|++|++|+.||.|++|++.
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  518 (615)
T 1pgu_A          439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ  518 (615)
T ss_dssp             EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence            0                               0001000000 2334577789999999999999999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-38  Score=277.65  Aligned_cols=288  Identities=21%  Similarity=0.311  Sum_probs=242.9

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      ...+|.+.|++++|+|+ +.+|++++ ||.|++|++...............+|...|.+++|+|++++|++++.|+.|++
T Consensus        46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            33489999999999997 68899888 99999999876433222222223378899999999999999999999999999


Q ss_pred             EECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          91 WDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        91 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ||+.+++  ....+..|...|.+++|+|+++.+++++.|+.|++||+.+....... ..|...+.+++|+|++.  .|++
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~--~l~~  200 (337)
T 1gxr_A          124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGT--KLWT  200 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS--EEEE
T ss_pred             EECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee-ecccCceEEEEECCCCC--EEEE
Confidence            9999877  56667889999999999999999999999999999998776554443 46888999999999754  7999


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      ++.|+.|++||+++.+..... .+...+.+++|+|+++++++++.|+.+++||+.+++......+...+..++|+|++.+
T Consensus       201 ~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          201 GGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSE
T ss_pred             EecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCE
Confidence            999999999999988776554 3677899999999999999999999999999999887766678899999999998875


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      ..      ....++.+.+|++..++.. ....+...+.+++|+|++++|++++.||.|++|++
T Consensus       280 l~------~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          280 FV------STGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE------EEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EE------EecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            32      2334678999999888765 33456788999999999999999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.2e-38  Score=287.75  Aligned_cols=325  Identities=23%  Similarity=0.325  Sum_probs=260.1

Q ss_pred             EEeEEecCcccce-EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           7 QLRGTLNGHNGWV-TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         7 ~~~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      .....+.+|.+.| +++.++   +++|++|+.||+|++||+....     ....+.+|...|.+++|++++ +|++|+.|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~d  182 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTD  182 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETT
T ss_pred             cceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCC
Confidence            3556889998884 677664   4699999999999999976432     344567999999999999988 99999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEe--CCCCEEEEEeCCCcEEEEeCCCcceE----------------------
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFS--VDNRQIVSSSRDKTIKLWNTLAHCKF----------------------  141 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~s~~~d~~v~iwd~~~~~~~----------------------  141 (380)
                      |.|++||+.+++....+..|...|.+++|+  +++.++++++.|+.+++||+......                      
T Consensus       183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999999999999999999999999999998  57789999999999999997654321                      


Q ss_pred             EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                      .....+|...+.++...  +  .++++++.|+.|++||+++.+....+.+|...|.+++|+|+++++++|+.|+.|++||
T Consensus       263 ~~~~~~~~~~v~~~~~~--~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd  338 (464)
T 3v7d_B          263 VGVLRGHMASVRTVSGH--G--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD  338 (464)
T ss_dssp             EEEECCCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             EEEccCccceEEEEcCC--C--CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            23345778888877533  2  3799999999999999999998888889999999999999999999999999999999


Q ss_pred             CCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe
Q psy6984         222 LNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       222 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  300 (380)
                      +.+++.+..+ .|...+.++++++.  +      +.....++.+.+|++..+...... .+...+..++|+|++++|++|
T Consensus       339 ~~~~~~~~~~~~h~~~v~~~~~~~~--~------l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          339 LENGELMYTLQGHTALVGLLRLSDK--F------LVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSG  409 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECSS--E------EEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEE
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCC--E------EEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEe
Confidence            9999988887 47888999998752  1      223345788999999876644332 345567788999999999999


Q ss_pred             eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      + ||.|++||+..+.           .+...        ...+...+.+++|+ ++.++++++.||.+.+|-++
T Consensus       410 ~-dg~i~iwd~~~g~-----------~~~~~--------~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          410 S-ENQFNIYNLRSGK-----------LVHAN--------ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             E-TTEEEEEETTTCC-----------EEESC--------TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             c-CCeEEEEECCCCc-----------EEehh--------hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence            8 8999999875443           22211        12345668899997 44455566778877776654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-39  Score=318.90  Aligned_cols=342  Identities=11%  Similarity=0.155  Sum_probs=246.0

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-ccccc-----ccccCCCcceEEEEEccC-CCEE
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQ-----KRLKGHSHFISDIVLSSD-GNYA   79 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~-----~~~~~h~~~v~~~~~~~~-~~~l   79 (380)
                      ++...+. |.+.|++++++|+ +++|++|+.||+|++||+...... +.++.     ..+.+|...|++++|+|+ +.+|
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            4455664 7789999999998 689999999999999998754321 10000     345789999999999996 5789


Q ss_pred             EEEeCCCcEEEEECCCCceeeeeccc------------------CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984          80 LSGSWDKTLRLWDLAAGKTTRRFEDH------------------TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        80 ~s~~~d~~i~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~  141 (380)
                      ++|+.|+.| +||+.+++....+..|                  ...|.+++|+|+|.+|++++.|+.|++||+.++...
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            999999999 9999999888877655                  467999999999999999999999999998765543


Q ss_pred             EEee----C-------------CCcCcEEEEEEccCCC---CCEEEEEe-------------------------------
Q psy6984         142 TIVE----D-------------GHSDWVSCVRFSPNHQ---NPIIVSAG-------------------------------  170 (380)
Q Consensus       142 ~~~~----~-------------~~~~~v~~~~~~~~~~---~~~l~s~~-------------------------------  170 (380)
                      ....    .             .|...|.+++|++...   ..+|++|+                               
T Consensus       247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~  326 (902)
T 2oaj_A          247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN  326 (902)
T ss_dssp             EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred             EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence            3211    0             1244688888854211   12334443                               


Q ss_pred             ---------------------------------------------CCCeEEEEeCCCceeeEe-----------------
Q psy6984         171 ---------------------------------------------WDRMVKVWNLTNCKLKIN-----------------  188 (380)
Q Consensus       171 ---------------------------------------------~d~~v~iwd~~~~~~~~~-----------------  188 (380)
                                                                   .|+.|++||+.++.....                 
T Consensus       327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~  406 (902)
T 2oaj_A          327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT  406 (902)
T ss_dssp             HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred             hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence                                                         344555555533211100                 


Q ss_pred             ------------------------eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE----EEE--------E
Q psy6984         189 ------------------------HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL----HTL--------V  232 (380)
Q Consensus       189 ------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~--------~  232 (380)
                                              +.+|...+..++|+|++++|++|+.|+.|++||+.++...    ...        .
T Consensus       407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~  486 (902)
T 2oaj_A          407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA  486 (902)
T ss_dssp             EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred             EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence                                    1122333344556789999999999999999999876421    111        3


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce---------------------------------------
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK---------------------------------------  273 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  273 (380)
                      |...|.+++|+|++.+.+      ....++.+.+|++..++                                       
T Consensus       487 h~~~V~svafspdg~~LA------sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (902)
T 2oaj_A          487 KELAVDKISFAAETLELA------VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG  560 (902)
T ss_dssp             SSCCEEEEEEETTTTEEE------EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTT
T ss_pred             CCCceeEEEecCCCCeEE------EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCC
Confidence            567899999999987643      33457888999886552                                       


Q ss_pred             ------eeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccC-CCCCCc
Q psy6984         274 ------METPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQST-KADPPM  346 (380)
Q Consensus       274 ------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  346 (380)
                            ....+..|...|++++||||| +||+|+.|++|++||+..+..+...         .+      ... ..|...
T Consensus       561 ~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~---------~~------~~~~~gh~~~  624 (902)
T 2oaj_A          561 VRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYME---------NI------REISGAQSAC  624 (902)
T ss_dssp             CSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEE---------EG------GGTCSSCCCC
T ss_pred             CCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEe---------eh------hHhccccccc
Confidence                  123445688899999999999 9999999999999986443321110         00      011 256778


Q ss_pred             eEEEEEe-----cCC---CEEEEEeeCCeEEEEEe
Q psy6984         347 CLSLAWS-----TDG---QTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       347 ~~~~~~s-----~dg---~~l~~g~~dg~v~iw~~  373 (380)
                      |.+++||     |||   ++|++|+.|++|++|++
T Consensus       625 V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          625 VTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             eEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            9999999     886   89999999999999999

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6e-39  Score=285.19  Aligned_cols=310  Identities=14%  Similarity=0.161  Sum_probs=239.6

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +..|.+.|++++|+|+ +++|++++.||.|++|++.....   .....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus         4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            3459999999999998 68999999999999999864320   1234567899999999999999999999999999999


Q ss_pred             ECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          92 DLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        92 d~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      |+.+++....  +..|...|.+++|+|+++++++++.|+.+++||+.....   ......+|...|.+++|+|++.  +|
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l  157 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV--LL  157 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS--EE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC--EE
Confidence            9988865444  367889999999999999999999999999999876542   3344467888999999999754  79


Q ss_pred             EEEeCCCeEEEEeCC------------------CceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         167 VSAGWDRMVKVWNLT------------------NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      ++++.|+.|++||++                  ..+....+.+|...+.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus       158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  237 (372)
T 1k8k_C          158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV  237 (372)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred             EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence            999999999999953                  45666667789999999999999999999999999999999877654


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      ..+.                                               .+...+.+++|+|++++|++| .|+.|++
T Consensus       238 ~~~~-----------------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i  269 (372)
T 1k8k_C          238 ATLA-----------------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVL  269 (372)
T ss_dssp             EEEE-----------------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred             EEEc-----------------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEE
Confidence            3321                                               122357789999999988887 8999999


Q ss_pred             Eeccc--ceeeeEeeccc--c---------eEEE--eeCcccc------cccCCCCCCceEEEEEe-cCC---CEEEEEe
Q psy6984         309 WNTLA--HCKFTIVDLET--K---------KMVE--ELRPDVV------SQSTKADPPMCLSLAWS-TDG---QTLFAGY  363 (380)
Q Consensus       309 w~~~~--~~~~~~~~~~~--~---------~~~~--~~~~~~~------~~~~~~~~~~~~~~~~s-~dg---~~l~~g~  363 (380)
                      |+...  +.-..+.....  .         ....  .......      ......|...|.+++|+ ++|   ++|++|+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~  349 (372)
T 1k8k_C          270 FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTG  349 (372)
T ss_dssp             EEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEE
T ss_pred             EEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEec
Confidence            99765  31000000000  0         0000  0000000      11123677889999866 666   9999999


Q ss_pred             eCCeEEEEEeee
Q psy6984         364 SDNTIRVWQVSV  375 (380)
Q Consensus       364 ~dg~v~iw~~~~  375 (380)
                      .||.|++|++..
T Consensus       350 ~Dg~i~~W~~~~  361 (372)
T 1k8k_C          350 MDGGMSIWDVRS  361 (372)
T ss_dssp             TTSEEEEEEHHH
T ss_pred             CCCceEEEEecC
Confidence            999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.6e-38  Score=288.17  Aligned_cols=324  Identities=25%  Similarity=0.412  Sum_probs=264.6

Q ss_pred             EeEEecCcccce-EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           8 LRGTLNGHNGWV-TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ....+.+|.+.| +++.++   +++|++|+.||+|++||+....     ....+.+|...|.++.++  +++|++|+.||
T Consensus       110 ~~~~l~~h~~~v~~~~~~~---g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg  179 (445)
T 2ovr_B          110 SPKVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMR--DNIIISGSTDR  179 (445)
T ss_dssp             CCEEEECSTTSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEE--TTEEEEEETTS
T ss_pred             eeEEecccCCCcEEEEEEc---CCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEec--CCEEEEEeCCC
Confidence            456788999874 666664   5799999999999999986543     234567999999999997  67999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      .|++||+.+++....+..|...|.+++|+  +..+++++.|+.|++||+.+....... .+|...+.++.+.  +  ..+
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~--~--~~l  252 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQYD--G--RRV  252 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEEC--S--SCE
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEEC--C--CEE
Confidence            99999999999999999999999999996  578999999999999998876655444 4788899999993  2  368


Q ss_pred             EEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecC
Q psy6984         167 VSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPN  245 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~  245 (380)
                      ++++.|+.|++||+++.+....+.+|...+.++.+  +++++++++.|+.|++||+++++.+..+. +...+..+.+++.
T Consensus       253 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  330 (445)
T 2ovr_B          253 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN  330 (445)
T ss_dssp             EEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT
T ss_pred             EEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCC
Confidence            99999999999999998888888899999999998  78999999999999999999999887774 5667777776543


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeeeeec---cccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS---LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL  322 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  322 (380)
                        +      +.....++.+.+|++..++....+..   +...|.+++|+  +++|++|+.||.|++|++..+..+..+..
T Consensus       331 --~------l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  400 (445)
T 2ovr_B          331 --I------LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT  400 (445)
T ss_dssp             --E------EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred             --E------EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec
Confidence              1      22334578899999988887766665   66789999885  68999999999999999765543322110


Q ss_pred             ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCe----EEEEEeee
Q psy6984         323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNT----IRVWQVSV  375 (380)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~----v~iw~~~~  375 (380)
                              .       ....+...+.+++|+|+|.+|++|+.||.    |.|||+..
T Consensus       401 --------~-------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          401 --------L-------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             --------C-------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             --------c-------ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence                    0       11234556889999999999999999997    99999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.7e-39  Score=279.88  Aligned_cols=258  Identities=19%  Similarity=0.297  Sum_probs=207.7

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCCC
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWDK   86 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~   86 (380)
                      +..+.+|.+.|++++|+|+ +++|++|+.|++|++|++.....   .....+.+|...|.+++|++  ++++|++|+.|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~---~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCB---CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCc---EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            3467899999999999998 78999999999999999864221   12356789999999999986  489999999999


Q ss_pred             cEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEEccCC
Q psy6984          87 TLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        87 ~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .|++||+.+++  .+..+..|...|.+++|+|+  +..+++++.|+.|++||+.... .......+|...|.+++|+|+.
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            99999998874  45667789999999999997  8899999999999999986542 1123345788999999999963


Q ss_pred             C-----------CCEEEEEeCCCeEEEEeCCCce----eeEeeeCCccceEEEEEcCCC---CEEEEEcCCCcEEEEECC
Q psy6984         162 Q-----------NPIIVSAGWDRMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPDG---SLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       162 ~-----------~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~  223 (380)
                      .           ..+|++++.|+.|++||+++.+    ....+.+|...|.+++|+|++   .+|++++.|+.|++||+.
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence            1           3489999999999999997654    445677899999999999985   899999999999999986


Q ss_pred             CCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984         224 DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD  303 (380)
Q Consensus       224 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  303 (380)
                      .+......        .                                  ......+...|++++|+|++++|++++.|
T Consensus       238 ~~~~~~~~--------~----------------------------------~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          238 NEQGPWKK--------T----------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             STTSCCEE--------E----------------------------------ESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             CCCCccce--------e----------------------------------eeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence            53210000        0                                  00001233568899999999999999999


Q ss_pred             CcEEEEecc
Q psy6984         304 KTIKLWNTL  312 (380)
Q Consensus       304 g~v~iw~~~  312 (380)
                      |+|++|+..
T Consensus       276 ~~v~lw~~~  284 (297)
T 2pm7_B          276 NKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999853

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=276.33  Aligned_cols=287  Identities=23%  Similarity=0.319  Sum_probs=229.9

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      ..++..++.+|.+.|+++++ |+ +.+|++++.||.|++|++....     ....+..|...|.+++|+|++++|++++.
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   79 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGK   79 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecC
Confidence            45788999999999999999 66 6799999999999999985432     23446678899999999999999999999


Q ss_pred             CCcEEEEECCCC---ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          85 DKTLRLWDLAAG---KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        85 d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      |+.|++|++...   +....+..|...|.+++|  ++..+++++.|+.+++||  .... ......|...+.++.+.|..
T Consensus        80 dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~-~~~~~~~~~~v~~~~~~~~~  154 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSL-VYNLQAHNASVWDAKVVSFS  154 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEE-EEEEECCSSCEEEEEEEETT
T ss_pred             CCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcE-EEecccCCCceeEEEEccCC
Confidence            999999998754   556777889999999999  578999999999999999  2222 23334688899999998832


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL  240 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~  240 (380)
                       ...+++++.|+.|++||..  +....+.. |...+.+++++|++. +++++.|+.|++||+++++.+..+.        
T Consensus       155 -~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--------  222 (313)
T 3odt_A          155 -ENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--------  222 (313)
T ss_dssp             -TTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE--------
T ss_pred             -CCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh--------
Confidence             2379999999999999954  33444445 888999999999998 8999999999999998776543321        


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEe
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  320 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  320 (380)
                                                             .+...+.+++|+|++ .|++++.||.|++||+..+.....+
T Consensus       223 ---------------------------------------~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          223 ---------------------------------------GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI  262 (313)
T ss_dssp             ---------------------------------------CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred             ---------------------------------------cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence                                                   233457788999998 5889999999999987554332221


Q ss_pred             ecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         321 DLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                                          ..+...+.+++|+|+|+ +++++.||.|++|++...
T Consensus       263 --------------------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          263 --------------------TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             --------------------ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             --------------------eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence                                11234578999999999 556899999999998754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-41  Score=297.84  Aligned_cols=309  Identities=11%  Similarity=0.106  Sum_probs=222.5

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      .|.+.|++++|+|+ +++|++|+.||.|++|++.....   .....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus         9 ~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             ECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             cCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            46789999999997 68999999999999999874310   134457889999999999999999999999999999999


Q ss_pred             CCCc---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984          94 AAGK---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIVEDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        94 ~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      .+++   ....+..|...|.+++|+|+++.+++++.|+.|++||+.....   ...+...|...|.+++|+|++.  +|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~  162 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV--LLA  162 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS--EEE
T ss_pred             CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC--EEE
Confidence            9877   5667788999999999999999999999999999999876542   3344434899999999999754  799


Q ss_pred             EEeCCCeEEEEeCCC------------------ceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Q psy6984         168 SAGWDRMVKVWNLTN------------------CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       168 s~~~d~~v~iwd~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      +++.|+.|++||+..                  .+....+ +|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            999999999999852                  3344444 889999999999999999999999999999987764210


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                      .                                           ....+..|...|.+++|+|++++|++|+.|+.+ +|
T Consensus       242 ~-------------------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~  277 (377)
T 3dwl_C          242 R-------------------------------------------ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LL  277 (377)
T ss_dssp             E-------------------------------------------ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EE
T ss_pred             e-------------------------------------------eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EE
Confidence            0                                           011223445678899999999999998876666 66


Q ss_pred             ecccce-ee-eEeecccc--------------------------eEEEeeC----cccccccCCCCCCceEEEEEecCC-
Q psy6984         310 NTLAHC-KF-TIVDLETK--------------------------KMVEELR----PDVVSQSTKADPPMCLSLAWSTDG-  356 (380)
Q Consensus       310 ~~~~~~-~~-~~~~~~~~--------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~dg-  356 (380)
                      +..... +. ..++....                          .+.....    ..........|...|.++++.+++ 
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~  357 (377)
T 3dwl_C          278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP  357 (377)
T ss_dssp             CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred             EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence            554221 10 00010000                          0000000    000111223478889999866654 


Q ss_pred             C---EEEEEeeCCeEEEEEe
Q psy6984         357 Q---TLFAGYSDNTIRVWQV  373 (380)
Q Consensus       357 ~---~l~~g~~dg~v~iw~~  373 (380)
                      .   .|++|+.||.|+||++
T Consensus       358 ~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          358 GNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             TEEEEEEEEETTSEEEEECC
T ss_pred             CceEEEEeecCCCcEEEecC
Confidence            3   5999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.5e-40  Score=289.26  Aligned_cols=251  Identities=20%  Similarity=0.238  Sum_probs=205.9

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      ....+|...|++++|+|+  ..+++++.||+|++||+....... .......+|...|++++|+|++++|++|+.|+.|+
T Consensus        88 ~~~~~~~~~V~~~~~s~d--~~~l~~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~  164 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVSE--KGILVASDSGAVELWEILEKESLL-VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK  164 (357)
T ss_dssp             SEEEECSSCEEEEEEETT--TEEEEEETTSCEEEC--------C-CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred             cccCCCCCCEEEEEEcCC--CCEEEEECCCEEEEeeccccceeE-EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence            345678999999999997  367788999999999987543221 11223458999999999999999999999999999


Q ss_pred             EEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEe-eCCCcCcEEEEEEccCCCCCEEE
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      +||+.+++.+..+..|...|.+++|+|++. .+++++.|+.|++||+.+....... ...+...+.+++|+|++. .+|+
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~~la  243 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD-DTFA  243 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST-TEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc-ceEE
Confidence            999999999999999999999999999875 7899999999999998765443322 235667799999999754 4788


Q ss_pred             EEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCc
Q psy6984         168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR  246 (380)
Q Consensus       168 s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~  246 (380)
                      +|+.|+.|++||+++.+....+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++.+..+               
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---------------  308 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---------------  308 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---------------
T ss_pred             EeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---------------
Confidence            99999999999999998888888999999999999987 57999999999999999877644332               


Q ss_pred             ccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee-cCCEEEEeeCCCcEEEEecc
Q psy6984         247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV-DNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~  312 (380)
                                                       +|...|.+++|+| ++++|+||+.||+|++|++.
T Consensus       309 ---------------------------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          309 ---------------------------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ---------------------------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             ---------------------------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence                                             2334577888888 78999999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-41  Score=307.33  Aligned_cols=329  Identities=11%  Similarity=0.060  Sum_probs=215.0

Q ss_pred             cccceEEEEeCCCC-C-------CeEEE-------------------eeCCCeEEEeecCCCCCCcccccccccCCCcce
Q psy6984          15 HNGWVTQIATNPKF-P-------DTILS-------------------CSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI   67 (380)
Q Consensus        15 h~~~v~~i~~~~~~-~-------~~l~t-------------------~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v   67 (380)
                      +.+.|.+|+|+|.. +       .+||+                   ++.|++|++|++........ ....+.+|...|
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~~~~~V  210 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVHSFGEV  210 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EEEEEEECCCSE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEecCCcE
Confidence            56789999998863 1       34544                   56889999999865432110 112345677889


Q ss_pred             EEEEEccC------CCEEEEEeCCCcEEEEECCCCce-----------eeeecccCCCeEEEEEeCCCCEEEEEeCCCcE
Q psy6984          68 SDIVLSSD------GNYALSGSWDKTLRLWDLAAGKT-----------TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTI  130 (380)
Q Consensus        68 ~~~~~~~~------~~~l~s~~~d~~i~vwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v  130 (380)
                      .+++|+|+      +.+||+++.||.|++||+.+++.           ...+..|...|.+++|+++ ..|++|+.||+|
T Consensus       211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV  289 (524)
T 2j04_B          211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEE
T ss_pred             EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEE
Confidence            99999996      57999999999999999987642           2356789999999999986 489999999999


Q ss_pred             EEEeCCCcceEEEeeCCCcCcEEEEE--EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCcc--ceEEEEEcCCCC
Q psy6984         131 KLWNTLAHCKFTIVEDGHSDWVSCVR--FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTG--YLNTVTVSPDGS  206 (380)
Q Consensus       131 ~iwd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~  206 (380)
                      ++||+...........+|...|.+++  ++|++. .+|+|++.|++|++||+++.+....+.+|..  .+.+++|+|+++
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~-~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~  368 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFED-TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY  368 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSC-CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCC-eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence            99998754332233457999999994  555431 4899999999999999988765555555543  478999999999


Q ss_pred             EEEEEcCCCcEEEEECCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc---
Q psy6984         207 LCASGGKDMNAMLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF---  282 (380)
Q Consensus       207 ~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  282 (380)
                      .+++++.|+.|++||++++..+..+ .|...|.+++|+|++++.+      ....++.+.+|+...+ ....+....   
T Consensus       369 ~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~------Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~  441 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL------AGSADGSLIITNAARR-LLHGIKNSSATQ  441 (524)
T ss_dssp             EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCE------EEETTTEEECCBSCSS-TTTCC------C
T ss_pred             eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEE------EEECCCEEEEEechHh-hccccccCccce
Confidence            9999999999999999887654333 3555566666666554321      1223445555554322 111110000   


Q ss_pred             --cceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC---
Q psy6984         283 --RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ---  357 (380)
Q Consensus       283 --~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---  357 (380)
                        ..+++++|+|+++.+. ...+  +++|...          .+.         ........|...|.+|+|+|+++   
T Consensus       442 ~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~----------~~g---------~~~~~l~gh~~~V~~Vafsp~~~~~~  499 (524)
T 2j04_B          442 KSLRLWKWDYSIKDDKYR-IDSS--YEVYPLT----------VND---------VSKAKIDAHGINITCTKWNETSAGGK  499 (524)
T ss_dssp             CCCEEEECBCCSSSCEEE-ECCC--CCCCC--------------------------------CCCSCCCEEECCSTTTTT
T ss_pred             eeeEEEEeccCCCCCeEE-ccCC--ceecccc----------cCC---------cceeeecCCCceEEEEECCCCCCccH
Confidence              0244555555555321 1111  1111100          000         00112234567789999999965   


Q ss_pred             EEEEEeeCCeEEEEEeee
Q psy6984         358 TLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       358 ~l~~g~~dg~v~iw~~~~  375 (380)
                      +||+|+.||.|+||++..
T Consensus       500 ~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          500 CYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEEEECTTSEEEEEECSC
T ss_pred             HHHhhccCceEEEEEccc
Confidence            999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-38  Score=311.17  Aligned_cols=359  Identities=18%  Similarity=0.233  Sum_probs=265.9

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      .+.+....+.+|.+.|+++.|+|+ +.+|++++.||.|++|++....     ....+.+|...|.+++|+|++++|++++
T Consensus        43 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~  116 (814)
T 3mkq_A           43 ETQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGE-----KVVDFEAHPDYIRSIAVHPTKPYVLSGS  116 (814)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence            345677888999999999999998 6899999999999999986542     2345678999999999999999999999


Q ss_pred             CCCcEEEEECCCC-ceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          84 WDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        84 ~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .||.|++||+.++ .....+..|...|.+++|+| ++..+++++.|+.|++||+............+...+.+++|+|.+
T Consensus       117 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  196 (814)
T 3mkq_A          117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP  196 (814)
T ss_dssp             TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCST
T ss_pred             CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECC
Confidence            9999999999887 66777888999999999999 889999999999999999876655555555666789999999955


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITAL  240 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~  240 (380)
                      ...++++++.|+.|++||+.+.+....+.+|...|.+++|+|+++++++++.|+.|++||+.+++.+..+. +...+.++
T Consensus       197 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~  276 (814)
T 3mkq_A          197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI  276 (814)
T ss_dssp             TCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE
Confidence            55689999999999999999988888888999999999999999999999999999999999998887774 56789999


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCce----------e---------------------------------eee
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGK----------M---------------------------------ETP  277 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---------------------------------~~~  277 (380)
                      +|+|++....+...     .+..+.+|......          .                                 ...
T Consensus       277 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (814)
T 3mkq_A          277 ATHPTGRKNYIASG-----FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKE  351 (814)
T ss_dssp             EECTTCGGGEEEEE-----ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEE
T ss_pred             EEccCCCceEEEEE-----eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeec
Confidence            99998763211111     11222222221110          0                                 001


Q ss_pred             eeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee-------EeecccceEEEeeCcccc--cccCCCCCCceE
Q psy6984         278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT-------IVDLETKKMVEELRPDVV--SQSTKADPPMCL  348 (380)
Q Consensus       278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  348 (380)
                      +..+...+.+++|+|+|+++++++ |+.+++|++.......       .+......+.........  -.....+...+.
T Consensus       352 ~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~  430 (814)
T 3mkq_A          352 LGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSV  430 (814)
T ss_dssp             ECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCC
T ss_pred             CCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEE
Confidence            122334578999999999999988 8999999965332111       000011111000000000  001122333455


Q ss_pred             EEEEecCC---CEEEEEeeCCeEEEEEee
Q psy6984         349 SLAWSTDG---QTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       349 ~~~~s~dg---~~l~~g~~dg~v~iw~~~  374 (380)
                      .++|+|||   +.|++++.|+.|++||+.
T Consensus       431 ~~~~s~dg~~~~~l~~~~~d~~v~~~d~~  459 (814)
T 3mkq_A          431 PMHSAIDRLFSGALLGVKSDGFVYFFDWD  459 (814)
T ss_dssp             CCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred             cCCcCccceecceEEEEecCCEEEEEECC
Confidence            66677776   466667777777777764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7e-39  Score=276.04  Aligned_cols=257  Identities=22%  Similarity=0.300  Sum_probs=203.3

Q ss_pred             ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC--ceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeC
Q psy6984          60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG--KTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~  135 (380)
                      +.+|...|++++|+|+|++|++|+.|+.|+|||+.++  +.+..+.+|.++|.+++|+|  ++++|++++.|++|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            5789999999999999999999999999999999743  66788899999999999986  4899999999999999998


Q ss_pred             CCcc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce--eeEeeeCCccceEEEEEcCC--------
Q psy6984         136 LAHC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYLNTVTVSPD--------  204 (380)
Q Consensus       136 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~--------  204 (380)
                      .... .......+|...|.+++|+|+....+|++++.|+.|++||++...  ......+|...|.+++|+|+        
T Consensus        85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~  164 (297)
T 2pm7_B           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  164 (297)
T ss_dssp             SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred             CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence            7542 122233578889999999997434589999999999999998653  23456789999999999997        


Q ss_pred             -----CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee
Q psy6984         205 -----GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF  279 (380)
Q Consensus       205 -----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (380)
                           +++|++|+.|+.|++||+++++....                                           ....+.
T Consensus       165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~-------------------------------------------~~~~l~  201 (297)
T 2pm7_B          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYV-------------------------------------------LESTLE  201 (297)
T ss_dssp             -----CCEEEEEETTSCEEEEEEETTTTEEE-------------------------------------------EEEEEC
T ss_pred             CCCCCcceEEEEcCCCcEEEEEEcCCCceEE-------------------------------------------EEEEec
Confidence                 57999999999999999865431100                                           011233


Q ss_pred             ccccceeEEEEeecC---CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC
Q psy6984         280 SLFRDVLSVAFSVDN---RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG  356 (380)
Q Consensus       280 ~~~~~v~~~~~s~~~---~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  356 (380)
                      +|...|.+++|+|++   ++|++|+.|++|++|+.......        .....+       ....+...+.+++|+|+|
T Consensus       202 ~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--------~~~~~~-------~~~~~~~~v~~~~~s~~g  266 (297)
T 2pm7_B          202 GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--------WKKTLL-------KEEKFPDVLWRASWSLSG  266 (297)
T ss_dssp             CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEES-------SSSCCSSCEEEEEECSSS
T ss_pred             CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc--------cceeee-------ecccCCCcEEEEEECCCC
Confidence            456678899999984   89999999999999986432100        000000       012345678899999999


Q ss_pred             CEEEEEeeCCeEEEEEee
Q psy6984         357 QTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       357 ~~l~~g~~dg~v~iw~~~  374 (380)
                      ++||+++.||.|++|++.
T Consensus       267 ~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          267 NVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CCEEEEETTSCEEEEEEC
T ss_pred             CEEEEEcCCCcEEEEEEC
Confidence            999999999999999975

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-37  Score=275.52  Aligned_cols=287  Identities=16%  Similarity=0.235  Sum_probs=239.0

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..+.+|...|++++|+|++++|++++.||.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN  105 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCce-----------eeEeeeCCcc--ceEEE
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCK-----------LKINHSGHTG--YLNTV  199 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~-----------~~~~~~~~~~--~i~~~  199 (380)
                      ........  +...+.+++|+|++.  ++++++.+     +.|++||+....           .......|..  .+.++
T Consensus       106 ~~~~~~~~--~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          106 GQCVATWK--SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             CCEEEEEE--CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CcEEEEee--cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            76655554  677899999999764  78888888     999999987542           2223344555  89999


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984         200 TVSPDGSLCASGGKDMNAMLWDLND-GKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP  277 (380)
Q Consensus       200 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (380)
                      +|+|+++++++++.|+.|++||+.+ .+.+..+. +...+.+++|+|++.+..      ....++.+.+|++..++....
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------~~~~d~~i~v~d~~~~~~~~~  255 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI------TSSRDTNSFLVDVSTLQVLKK  255 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE------EEETTSEEEEEETTTCCEEEE
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE------EecCCceEEEEECCCCceeee
Confidence            9999999999999999999999998 66666664 688899999999876532      223567899999998877655


Q ss_pred             eeccccceeEEEEeecCCEEEEeeCCC--------------cEEEEecccceeeeEeecccceEEEeeCcccccccCCCC
Q psy6984         278 FFSLFRDVLSVAFSVDNRQIVSSSRDK--------------TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD  343 (380)
Q Consensus       278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (380)
                      +. +...+..++|+|+++++++++.++              .+++|+...+           ..+..+         ..+
T Consensus       256 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------~~~~~~---------~~~  314 (369)
T 3zwl_B          256 YE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-----------EEIGRV---------QGH  314 (369)
T ss_dssp             EE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-----------CEEEEE---------ECC
T ss_pred             ec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-----------cchhhe---------ecc
Confidence            54 667899999999999999999998              5666654333           222222         234


Q ss_pred             CCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       344 ~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ...+.+++|+|+|++|++|+.||.|++|++..
T Consensus       315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            55688999999999999999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-38  Score=285.40  Aligned_cols=292  Identities=20%  Similarity=0.308  Sum_probs=232.2

Q ss_pred             EeEEecCcccc--eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           8 LRGTLNGHNGW--VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         8 ~~~~~~~h~~~--v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ......+|...  ++++.|++   ..+++++.||.|++|++......    ......|...|.+++|+|++++|++|+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  155 (401)
T 4aez_A           83 RVLDAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVS----ALAETDESTYVASVKWSHDGSFLSVGLGN  155 (401)
T ss_dssp             EEEECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEE----EEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEe----EeeecCCCCCEEEEEECCCCCEEEEECCC
Confidence            44455677665  45566664   45888899999999998754321    11123478899999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      |.|++||+.+++....+..|...|.+++|+  +..+++++.|+.|++||+...........+|...|.+++|+|++.  +
T Consensus       156 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~  231 (401)
T 4aez_A          156 GLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL--Q  231 (401)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--E
T ss_pred             CeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC--E
Confidence            999999999999999999999999999994  679999999999999998754444444557899999999999654  7


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC-EEEEEc--CCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGG--KDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                      |++++.|+.|++||+++.+....+.+|...|.+++|+|++. ++++++  .|+.|++||+.+++.+..+.+.        
T Consensus       232 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--------  303 (401)
T 4aez_A          232 LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--------  303 (401)
T ss_dssp             EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--------
T ss_pred             EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--------
Confidence            99999999999999999888888888999999999999765 566654  7999999999887765443221        


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE--eeCCCcEEEEecccceeeeEe
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS--SSRDKTIKLWNTLAHCKFTIV  320 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~v~iw~~~~~~~~~~~  320 (380)
                                                              ..+.+++|+|++++|++  |+.||.|++|++..+......
T Consensus       304 ----------------------------------------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~  343 (401)
T 4aez_A          304 ----------------------------------------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV  343 (401)
T ss_dssp             ----------------------------------------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred             ----------------------------------------CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence                                                    24667888999999998  448999999986543222111


Q ss_pred             ecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         321 DLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      .                  ...|...+.+++|+|+|++|++++.||.|++|++...
T Consensus       344 ~------------------~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          344 D------------------IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             E------------------EECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             E------------------ecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            0                  1234556889999999999999999999999998643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=285.24  Aligned_cols=301  Identities=21%  Similarity=0.283  Sum_probs=234.0

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc--------cccccCCCcceEEEEEcc-CC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP--------QKRLKGHSHFISDIVLSS-DG   76 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~-~~   76 (380)
                      .+....+.+|.+.|++++|+|..+++|++|+.||.|++|++..........        .....+|...|.+++|+| ++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            345567889999999999999337899999999999999987644322111        111246999999999999 78


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS  153 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~  153 (380)
                      ++|++++.|+.|++||+.+++....+. +...+.++.++|.   +..+++++.|+.|++||+......... ..|...|.
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~  190 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEIL  190 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEE
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEE
Confidence            899999999999999999988887765 6788999999884   459999999999999998766554443 47888999


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-eEee---------------eCCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-KINH---------------SGHTGYLNTVTVSPDGSLCASGGKDMNA  217 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i  217 (380)
                      +++|+|++.. +|++++.|+.|++||++.... ....               ..|...|.+++|+|++++|++++.|+.|
T Consensus       191 ~~~~~~~~~~-ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  269 (408)
T 4a11_B          191 AVSWSPRYDY-ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM  269 (408)
T ss_dssp             EEEECSSCTT-EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEECCCCCc-EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence            9999998643 688999999999999976541 1111               4688899999999999999999999999


Q ss_pred             EEEECCCCcEEEEEEec---CceE--EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         218 MLWDLNDGKHLHTLVHN---DIIT--ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       218 ~i~d~~~~~~~~~~~~~---~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      ++||+.+++........   ....  ...+......     .......++.+.+|++..++....+..|...|.+++|+|
T Consensus       270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS-----EFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS-----CEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred             EEEECCCCccceeccccccccccccceeEEecCCCc-----eEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence            99999987654332110   0000  1111111100     111223467899999999998888888999999999999


Q ss_pred             cCCEEEEeeCCCcEEEEecccc
Q psy6984         293 DNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       293 ~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                      ++++|++|+.||.|++|++...
T Consensus       345 ~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          345 NFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             TTTEEEEEETTSCEEEEEECC-
T ss_pred             CCCEEEEECCCCeEEEEeCCCC
Confidence            9999999999999999987544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-38  Score=275.71  Aligned_cols=259  Identities=20%  Similarity=0.296  Sum_probs=196.5

Q ss_pred             EEeEEe-cC-cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC--cccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984           7 QLRGTL-NG-HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         7 ~~~~~~-~~-h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      ++...+ .+ |.+.|++++|+|+ +.+|++|+.|++|++|++......  .......+.+|...|.+++|+|++++|++|
T Consensus        47 ~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~  125 (330)
T 2hes_X           47 TLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC  125 (330)
T ss_dssp             EEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE
T ss_pred             EEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            455556 45 9999999999998 689999999999999998532110  111234578999999999999999999999


Q ss_pred             eCCCcEEEEECCCC----ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEE
Q psy6984          83 SWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRF  157 (380)
Q Consensus        83 ~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~  157 (380)
                      +.|+.|++||+...    +.+..+..|...|.+++|+|++.+|++++.|++|++||..... .......+|...|.+++|
T Consensus       126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~  205 (330)
T 2hes_X          126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF  205 (330)
T ss_dssp             ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe
Confidence            99999999999432    4566788999999999999999999999999999999976542 233345689999999999


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCc--------eeeEeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         158 SPNHQNPIIVSAGWDRMVKVWNLTNC--------KLKINHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~~v~iwd~~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      +|+.....|++++.|++|++||+...        .....+.+ |...|.+++|++++ +|++++.|+.|++||..+++..
T Consensus       206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~  284 (330)
T 2hes_X          206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK  284 (330)
T ss_dssp             CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE
T ss_pred             cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE
Confidence            99865568999999999999998653        22233334 88899999999765 8899999999999997554210


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc-ceeEEEEee--cCCEEEEeeCCCc
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR-DVLSVAFSV--DNRQIVSSSRDKT  305 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~s~~~dg~  305 (380)
                      ...                                            .....|.. .|.+++|+|  ++++|++|+.||+
T Consensus       285 ~~~--------------------------------------------~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          285 VFA--------------------------------------------KRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             EEE--------------------------------------------EESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             EEe--------------------------------------------ccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence            000                                            00112333 578899999  6899999999999


Q ss_pred             EEEEec
Q psy6984         306 IKLWNT  311 (380)
Q Consensus       306 v~iw~~  311 (380)
                      |++|++
T Consensus       321 v~~W~~  326 (330)
T 2hes_X          321 VNFWSL  326 (330)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.6e-38  Score=275.86  Aligned_cols=254  Identities=23%  Similarity=0.329  Sum_probs=214.4

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-cccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      .+....+..|...|.+++++|+ +.++++++.|+++++|++...... .......+.+|...|.++.|+|++++|++++.
T Consensus        96 ~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~  174 (354)
T 2pbi_B           96 TNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG  174 (354)
T ss_dssp             CCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET
T ss_pred             CCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC
Confidence            3456678889999999999998 789999999999999998643211 11223456789999999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      |+.|++||+.+++.+..+.+|...|.+++|+|  ++..+++|+.|+.|++||+.+...... ..+|...|.+++|+|++.
T Consensus       175 D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-~~~h~~~v~~v~~~p~~~  253 (354)
T 2pbi_B          175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-FETHESDVNSVRYYPSGD  253 (354)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSS
T ss_pred             CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCCCeEEEEEeCCCC
Confidence            99999999999999999999999999999987  578999999999999999887665444 357899999999999764


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL  240 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~  240 (380)
                        +|++++.|++|++||++..+....+..  +...+.+++|+|+++++++|+.|+.|++||+.+++.+..          
T Consensus       254 --~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~----------  321 (354)
T 2pbi_B          254 --AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI----------  321 (354)
T ss_dssp             --EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE----------
T ss_pred             --EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE----------
Confidence              799999999999999998765544433  334689999999999999999999999999987754322          


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                                                           +.+|...|.+++|+|++++|++|+.||+|++|+
T Consensus       322 -------------------------------------l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          322 -------------------------------------LFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -------------------------------------ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             -------------------------------------EECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                                                 223456788999999999999999999999995

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=277.66  Aligned_cols=263  Identities=21%  Similarity=0.284  Sum_probs=206.1

Q ss_pred             ccccCCCc-ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee---eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy6984          58 KRLKGHSH-FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW  133 (380)
Q Consensus        58 ~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw  133 (380)
                      ..+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++...   ...+|...|.+++|+|++++|++++.|+.+++|
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw   88 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW   88 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence            45678988 89999999999999999999999999998875432   236799999999999999999999999999999


Q ss_pred             eCCCcc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce---eeEeeeCCccceEEEEEcCCCCEEE
Q psy6984         134 NTLAHC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK---LKINHSGHTGYLNTVTVSPDGSLCA  209 (380)
Q Consensus       134 d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~  209 (380)
                      |..... .......+|...|.+++|+|+++  +|++++.|+.|++||+....   ....+.+|...|.+++|+|++++|+
T Consensus        89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  166 (345)
T 3fm0_A           89 KKNQDDFECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA  166 (345)
T ss_dssp             EECCC-EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred             EccCCCeEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence            976543 22334568999999999999764  79999999999999997653   3445678999999999999999999


Q ss_pred             EEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEE
Q psy6984         210 SGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA  289 (380)
Q Consensus       210 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  289 (380)
                      +++.|+.|++||...++....                                             ..+.+|...|.+++
T Consensus       167 s~s~d~~i~~w~~~~~~~~~~---------------------------------------------~~~~~h~~~v~~l~  201 (345)
T 3fm0_A          167 SASYDDTVKLYREEEDDWVCC---------------------------------------------ATLEGHESTVWSLA  201 (345)
T ss_dssp             EEETTSCEEEEEEETTEEEEE---------------------------------------------EEECCCSSCEEEEE
T ss_pred             EEeCCCcEEEEEecCCCEEEE---------------------------------------------EEecCCCCceEEEE
Confidence            999999999999765432110                                             11224556789999


Q ss_pred             EeecCCEEEEeeCCCcEEEEecccceeeeEeec----ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC
Q psy6984         290 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL----ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD  365 (380)
Q Consensus       290 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d  365 (380)
                      |+|++++|++|+.|++|++|+.........+..    .....+.        .....|...+.+++|+|++..|++++.|
T Consensus       202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~v~~~~~~~~l~s~~~d  273 (345)
T 3fm0_A          202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC--------TLSGFHSRTIYDIAWCQLTGALATACGD  273 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE--------EECSSCSSCEEEEEECTTTCCEEEEETT
T ss_pred             ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE--------EecCCCCCcEEEEEEecCCCEEEEEeCC
Confidence            999999999999999999998532211000000    0000111        1122356678999999999999999999


Q ss_pred             CeEEEEEeee
Q psy6984         366 NTIRVWQVSV  375 (380)
Q Consensus       366 g~v~iw~~~~  375 (380)
                      +.|++|++..
T Consensus       274 ~~i~vw~~~~  283 (345)
T 3fm0_A          274 DAIRVFQEDP  283 (345)
T ss_dssp             SCEEEEEECT
T ss_pred             CeEEEEEeCC
Confidence            9999999753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.2e-38  Score=288.64  Aligned_cols=320  Identities=15%  Similarity=0.274  Sum_probs=227.0

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc------ccccccccCCC------------cceEEEEEccCC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY------GVPQKRLKGHS------------HFISDIVLSSDG   76 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~------~~~~~~~~~h~------------~~v~~~~~~~~~   76 (380)
                      |.+.|++++|+|+ +++|++|+.||.|++|++.......      ......+.+|.            ..|++++|+|++
T Consensus        27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            5789999999997 7899999999999999987543100      00134567898            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEECCCCcee---------------------------------------ee-ecccCCCeEEEEE
Q psy6984          77 --NYALSGSWDKTLRLWDLAAGKTT---------------------------------------RR-FEDHTKDVLSVAF  114 (380)
Q Consensus        77 --~~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~~~  114 (380)
                        .+|++++.|+.|++||+.+++..                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              89999999999999998764331                                       12 3579999999999


Q ss_pred             eCCCCEEEEEeCCCcEEEEeCCCcc-eEEEe------eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee--
Q psy6984         115 SVDNRQIVSSSRDKTIKLWNTLAHC-KFTIV------EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL--  185 (380)
Q Consensus       115 ~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--  185 (380)
                      +|+++.++++ .|+.|++||+.... .....      ..+|...|.+++|+|++. .+|++++.|+.|++||+++.+.  
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEEEEECcCCcccc
Confidence            9999999998 89999999987432 22221      347888999999999752 3899999999999999998775  


Q ss_pred             --eEeeeCCcc------------ceEEEEEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEEecCceEEEEeecCcccce
Q psy6984         186 --KINHSGHTG------------YLNTVTVSPDGSLCASGGKDMNAMLWDLND-GKHLHTLVHNDIITALCFSPNRSFQK  250 (380)
Q Consensus       186 --~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~  250 (380)
                        ...+.+|..            .|.+++|+|+|++|++++. +.|++||++. ++.+..+.....+..       ..  
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~-------~l--  333 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS-------KL--  333 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT-------TH--
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc-------cc--
Confidence              456666665            8999999999999999999 9999999986 543332221100000       00  


Q ss_pred             eeeeeeeeccccceEEEEcCCceeeeeee--ccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984         251 IKLDISRTLQKSNLILYPINHGKMETPFF--SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV  328 (380)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  328 (380)
                                               ...+  .....+..++|+|++++|++|+.||.|++||+..+..+.+.........
T Consensus       334 -------------------------~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~  388 (447)
T 3dw8_B          334 -------------------------CSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKP  388 (447)
T ss_dssp             -------------------------HHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCT
T ss_pred             -------------------------cccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccccc
Confidence                                     0000  0001234589999999999999999999999877665433211110000


Q ss_pred             -EeeCcc-----------cccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         329 -EELRPD-----------VVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       329 -~~~~~~-----------~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                       ....+.           ............+..++|+|+|++||+|+.++ +.+|.-
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence             000000           00001122345678899999999999988776 777763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-37  Score=269.27  Aligned_cols=255  Identities=22%  Similarity=0.341  Sum_probs=208.9

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .....+.+|...|+++.++|+ +.+|++|+.|++|++||+....     ....+.+|...|.+++|+|++++|++|+.|+
T Consensus        56 ~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~  129 (319)
T 3frx_A           56 VPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGE-----TYQRFVGHKSDVMSVDIDKKASMIISGSRDK  129 (319)
T ss_dssp             EEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred             ccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCC-----eeEEEccCCCcEEEEEEcCCCCEEEEEeCCC
Confidence            346688999999999999998 7899999999999999986532     2345789999999999999999999999999


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCC------CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD------NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~------~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      .|++||+. ++....+.+|...|.+++|+|.      +..+++++.|+.|++||+....... ...+|...|.+++|+|+
T Consensus       130 ~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~sp~  207 (319)
T 3frx_A          130 TIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA-DFIGHNSNINTLTASPD  207 (319)
T ss_dssp             CEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEE-EECCCCSCEEEEEECTT
T ss_pred             eEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe-eecCCCCcEEEEEEcCC
Confidence            99999986 5677788899999999999985      4589999999999999987654433 34589999999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEE
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL  240 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~  240 (380)
                      +.  +|++++.|+.|++||+.+.+....+.. ...+.+++|+|++.++++++.+ .+++|++.....+..+...      
T Consensus       208 g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~------  277 (319)
T 3frx_A          208 GT--LIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE------  277 (319)
T ss_dssp             SS--EEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCC------
T ss_pred             CC--EEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc------
Confidence            64  799999999999999999887776664 4579999999999999888765 5999998765433222100      


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                           .                            ......+...+.+++|+|||++|++|+.||+|++|++.
T Consensus       278 -----~----------------------------~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          278 -----F----------------------------AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             -----C----------------------------TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             -----c----------------------------cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence                 0                            00011233457899999999999999999999999853

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.3e-39  Score=281.57  Aligned_cols=257  Identities=19%  Similarity=0.342  Sum_probs=200.9

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWD   85 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d   85 (380)
                      +...+.+|.+.|++++|+|+ +++|++|+.|++|++||+.....   .....+.+|...|.+++|++  ++++|++|+.|
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQ---ILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             ---------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEE---EEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             eeeecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCc---EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            34466799999999999997 78999999999999999864321   12345789999999999975  48999999999


Q ss_pred             CcEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEcc
Q psy6984          86 KTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        86 ~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~  159 (380)
                      +.|++||+.+++  ....+.+|...|.+++|+|+  +.++++++.|+.|++||.......  .....+|...+.+++|+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            999999998873  55667889999999999998  789999999999999998654322  233457888899999998


Q ss_pred             CCC---------------CCEEEEEeCCCeEEEEeCCCc---eeeEeeeCCccceEEEEEcCCC----CEEEEEcCCCcE
Q psy6984         160 NHQ---------------NPIIVSAGWDRMVKVWNLTNC---KLKINHSGHTGYLNTVTVSPDG----SLCASGGKDMNA  217 (380)
Q Consensus       160 ~~~---------------~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i  217 (380)
                      +..               ..+|++++.|+.|++||++..   +....+.+|...|.+++|+|++    ++|++++.|+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence            631               247899999999999999754   3455677899999999999986    789999999999


Q ss_pred             EEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984         218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  297 (380)
                      ++||+.+....                  ...                         ...+..+...|++++|+|++++|
T Consensus       241 ~iw~~~~~~~~------------------~~~-------------------------~~~~~~~~~~v~~v~~sp~g~~l  277 (316)
T 3bg1_A          241 FIWTCDDASSN------------------TWS-------------------------PKLLHKFNDVVWHVSWSITANIL  277 (316)
T ss_dssp             EEEECSSTTCC------------------CCB-------------------------CCEEEECSSCEEEEEECTTTCCE
T ss_pred             EEEEccCcccc------------------chh-------------------------hhhhhcCCCcEEEEEEcCCCCEE
Confidence            99998653100                  000                         00011234568899999999999


Q ss_pred             EEeeCCCcEEEEec
Q psy6984         298 VSSSRDKTIKLWNT  311 (380)
Q Consensus       298 ~s~~~dg~v~iw~~  311 (380)
                      ++++.||+|++|+.
T Consensus       278 as~~~D~~v~lw~~  291 (316)
T 3bg1_A          278 AVSGGDNKVTLWKE  291 (316)
T ss_dssp             EEEESSSCEEEEEE
T ss_pred             EEEcCCCeEEEEEE
Confidence            99999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-38  Score=283.64  Aligned_cols=265  Identities=23%  Similarity=0.332  Sum_probs=216.3

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC--cccccccccCCCcceEEEEEccC-CCEEE
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN--YGVPQKRLKGHSHFISDIVLSSD-GNYAL   80 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~-~~~l~   80 (380)
                      .+.+....+.+|...|.+++|+|+ +++|++|+.|+.+++|++......  .......+.+|...|.++.|.|+ +.+|+
T Consensus        96 ~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~  174 (380)
T 3iz6_a           96 LTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI  174 (380)
T ss_dssp             TTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred             CCCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEE
Confidence            344567889999999999999998 789999999999999998643211  11123457899999999999986 45799


Q ss_pred             EEeCCCcEEEEECCCCceeeee-----cccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984          81 SGSWDKTLRLWDLAAGKTTRRF-----EDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  154 (380)
                      +|+.|+.|++||+.+++.+..+     .+|...|.+++|++ ++..+++|+.|+.|++||+...........+|...|.+
T Consensus       175 s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~  254 (380)
T 3iz6_a          175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS  254 (380)
T ss_dssp             EECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred             EECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence            9999999999999999888776     57889999999976 88999999999999999986433333344689999999


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC-------ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH-------TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                      ++|+|++.  +|++++.|++|++||+++++....+..+       ...+.+++|+|+|+++++|+.|+.|++||+..++.
T Consensus       255 v~~~p~~~--~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          255 VKFFPDGQ--RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM  332 (380)
T ss_dssp             EEECTTSS--EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred             EEEecCCC--eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence            99999764  7999999999999999988766554433       23489999999999999999999999999987765


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                      +..+..                                           ....|...|.+++|+|++++|+||+.||+|+
T Consensus       333 ~~~~~~-------------------------------------------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  369 (380)
T 3iz6_a          333 VLNLGT-------------------------------------------LQNSHEGRISCLGLSSDGSALCTGSWDKNLK  369 (380)
T ss_dssp             EEEECC-------------------------------------------SCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             EEEEec-------------------------------------------ccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence            432210                                           0113456788999999999999999999999


Q ss_pred             EEecccc
Q psy6984         308 LWNTLAH  314 (380)
Q Consensus       308 iw~~~~~  314 (380)
                      +|++..+
T Consensus       370 iW~~~~~  376 (380)
T 3iz6_a          370 IWAFSGH  376 (380)
T ss_dssp             EEECCSS
T ss_pred             EEecCCC
Confidence            9987544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.6e-38  Score=276.27  Aligned_cols=256  Identities=21%  Similarity=0.284  Sum_probs=197.0

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEe
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd  134 (380)
                      .+.+|.+.|++++|+|+|++|++|+.|+.|+|||+.+++  .+..+.+|..+|.+++|+|  ++++|++++.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            457899999999999999999999999999999998764  4567889999999999986  489999999999999999


Q ss_pred             CCCcc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee---eEeeeCCccceEEEEEcCC------
Q psy6984         135 TLAHC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL---KINHSGHTGYLNTVTVSPD------  204 (380)
Q Consensus       135 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~------  204 (380)
                      +.... .......+|...|.+++|+|+....+|++++.|+.|++||++....   .....+|...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            87643 2233345799999999999985456799999999999999986532   2345678889999999997      


Q ss_pred             -----------CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984         205 -----------GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK  273 (380)
Q Consensus       205 -----------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (380)
                                 +++|++|+.|+.|++||++......                                            
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~--------------------------------------------  203 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK--------------------------------------------  203 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE--------------------------------------------
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccc--------------------------------------------
Confidence                       4789999999999999986432100                                            


Q ss_pred             eeeeeeccccceeEEEEeecC----CEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEE
Q psy6984         274 METPFFSLFRDVLSVAFSVDN----RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLS  349 (380)
Q Consensus       274 ~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (380)
                      ....+..|...|.+++|+|++    ++|++|+.||+|++|+........    .....+            ..+...|.+
T Consensus       204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~----~~~~~~------------~~~~~~v~~  267 (316)
T 3bg1_A          204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT----WSPKLL------------HKFNDVVWH  267 (316)
T ss_dssp             EEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC----CBCCEE------------EECSSCEEE
T ss_pred             eeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc----hhhhhh------------hcCCCcEEE
Confidence            011223455678889999886    789999999999999864311000    000011            123456889


Q ss_pred             EEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         350 LAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       350 ~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++|+|+|++||+|+.||.|++|+..
T Consensus       268 v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          268 VSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999999999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.2e-37  Score=275.79  Aligned_cols=281  Identities=21%  Similarity=0.368  Sum_probs=235.7

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT   98 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   98 (380)
                      ++.|+|++.  ++|++|. |++|+|||.......   ....+.+|...|++++|+|+|++|++|+.||.|+|||+.+++.
T Consensus       108 ~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          108 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             ceeEEECCC--CEEEEEe-CCEEEEEECCCCCEE---EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence            566889864  4777665 899999998654321   1223567888999999999999999999999999999999999


Q ss_pred             eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984          99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW  178 (380)
Q Consensus        99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw  178 (380)
                      +..+.+|...+.+++++  +..+++|+.|+.+++||............+|...+.++.+.|++.  ++++++.|+.+++|
T Consensus       182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~--~l~s~~~D~~v~i~  257 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVW  257 (420)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC--eeeeeeccccceEE
Confidence            99999999999988775  679999999999999998765555555568999999999999764  79999999999999


Q ss_pred             eCCCce----eeEeeeCCccceEEEEEcCCCC-EEEE--EcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984         179 NLTNCK----LKINHSGHTGYLNTVTVSPDGS-LCAS--GGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       179 d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      +....+    .......|...|.+++|+|.+. ++++  |+.|+.|++||+.+++....+.....+.++.|+|++.....
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS  337 (420)
T ss_dssp             ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEE
Confidence            997654    2345567888999999999665 4444  46899999999999999999998999999999998765332


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                          .....++.+.+|++.+++....+.+|...|++++|+|||++|+||+.|++|++||+..
T Consensus       338 ----~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          338 ----GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             ----EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ----EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence                2233567899999999999888999999999999999999999999999999999754

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.4e-37  Score=274.79  Aligned_cols=243  Identities=25%  Similarity=0.487  Sum_probs=201.5

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK   97 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   97 (380)
                      .|++++|+|+ +++|++|+.||+|++||+....     ....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       125 ~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~  198 (393)
T 1erj_A          125 YIRSVCFSPD-GKFLATGAEDRLIRIWDIENRK-----IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  198 (393)
T ss_dssp             BEEEEEECTT-SSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEECCC-CCEEEEEcCCCeEEEEECCCCc-----EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence            4999999997 6899999999999999986432     234578999999999999999999999999999999999988


Q ss_pred             eeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEee------CCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984          98 TTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVE------DGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        98 ~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      ....+. +...+.+++|+| ++.++++++.|+.|++||...........      .+|...|.+++|+|+++  +|++++
T Consensus       199 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~l~s~s  275 (393)
T 1erj_A          199 CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGS  275 (393)
T ss_dssp             EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS--EEEEEE
T ss_pred             eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC--EEEEEe
Confidence            877765 557799999999 89999999999999999987665443331      47889999999999764  799999


Q ss_pred             CCCeEEEEeCCCc------------eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCce
Q psy6984         171 WDRMVKVWNLTNC------------KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDII  237 (380)
Q Consensus       171 ~d~~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i  237 (380)
                      .|+.|++||+++.            .....+.+|...|.+++++|++++|++|+.|+.|++||+.+++.+..+. |...|
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v  355 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV  355 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCE
Confidence            9999999999753            2334567899999999999999999999999999999999888766553 45555


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      .+++|++..                                          .|+|++++|+||+.||+|++|+.
T Consensus       356 ~~v~~~~~~------------------------------------------~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          356 ISVAVANGS------------------------------------------SLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             EEEEECSSC------------------------------------------TTCTTCEEEEEEETTSEEEEEEE
T ss_pred             EEEEecCCc------------------------------------------CcCCCCCEEEEECCCCcEEECcc
Confidence            555555432                                          12357889999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-38  Score=293.61  Aligned_cols=290  Identities=12%  Similarity=0.069  Sum_probs=214.9

Q ss_pred             eEEecCcccceEEEEeCCC-----CCCeEEEeeCCCeEEEeecCCCCCC------cccccccccCCCcceEEEEEccCCC
Q psy6984           9 RGTLNGHNGWVTQIATNPK-----FPDTILSCSRDNTLIIWKLTRDDTN------YGVPQKRLKGHSHFISDIVLSSDGN   77 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~-----~~~~l~t~~~dg~v~vw~~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~   77 (380)
                      ...+.+|.+.|++++|+|.     .+.+||+++.||+|++|++......      ...+...+.+|...|++++|+++ .
T Consensus       200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~  278 (524)
T 2j04_B          200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T  278 (524)
T ss_dssp             EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S
T ss_pred             EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C
Confidence            3456788999999999985     2469999999999999998754321      11122356789999999999986 4


Q ss_pred             EEEEEeCCCcEEEEECCCCc-eeeeecccCCCeEEE--EEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEeeCCCc--Cc
Q psy6984          78 YALSGSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSV--AFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHS--DW  151 (380)
Q Consensus        78 ~l~s~~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~~  151 (380)
                      +|++|+.||.|++||+.+++ ....+..|...|.++  +|+|++ .+|+|++.|++|++||++......... +|.  ..
T Consensus       279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~  357 (524)
T 2j04_B          279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSN  357 (524)
T ss_dssp             EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCS
T ss_pred             eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCc
Confidence            89999999999999998764 445678999999999  568887 899999999999999987643322211 232  24


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      |.+++|+|+++  .+++++.|++|++||+++......+.+|...|++++|+|+|++|++|+.|+.|++||+.... +...
T Consensus       358 v~~v~fsp~~~--~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~  434 (524)
T 2j04_B          358 LVPVVYCPQIY--SYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL-LHGI  434 (524)
T ss_dssp             CCCEEEETTTT--EEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST-TTCC
T ss_pred             ccceEeCCCcC--eEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh-cccc
Confidence            78899999764  68899999999999999887766777899999999999999999999999999999986531 1111


Q ss_pred             ------EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC-CceeeeeeeccccceeEEEEeecCC---EEEEee
Q psy6984         232 ------VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETPFFSLFRDVLSVAFSVDNR---QIVSSS  301 (380)
Q Consensus       232 ------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~  301 (380)
                            .....+..++|+|++.....    .     ....++... .+.....+.+|...|.+++|+|++.   .+++|+
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~----~-----~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~  505 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRI----D-----SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN  505 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEE----C-----CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEc----c-----CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence                  11124668888988752111    0     111122111 2444556778888999999999965   999999


Q ss_pred             CCCcEEEEecc
Q psy6984         302 RDKTIKLWNTL  312 (380)
Q Consensus       302 ~dg~v~iw~~~  312 (380)
                      .||+||+|++.
T Consensus       506 ~~g~vrlw~l~  516 (524)
T 2j04_B          506 SAGLLTLEYLS  516 (524)
T ss_dssp             TTSEEEEEECS
T ss_pred             cCceEEEEEcc
Confidence            99999999863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.4e-38  Score=274.46  Aligned_cols=304  Identities=17%  Similarity=0.263  Sum_probs=218.8

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--CCCEEEEEeCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--DGNYALSGSWD   85 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d   85 (380)
                      +...+.||.+.|++++|+|+ +++|++|+.||+|++|++....... .....+.+|...|.+++|+|  ++++|++++.|
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNW-ELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCE-EEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcc-eecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            34567899999999999997 6899999999999999987543221 12345678999999999999  69999999999


Q ss_pred             CcEEEEECCCC---------ceeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcceEEE-----------
Q psy6984          86 KTLRLWDLAAG---------KTTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHCKFTI-----------  143 (380)
Q Consensus        86 ~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~~~-----------  143 (380)
                      +.|++||+.++         +....+..|...|.+++|+|+  +.++++++.|+.|++||+........           
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999887         457778889999999999999  99999999999999999765432111           


Q ss_pred             -eeCCCcCcEEEEEEccCC-CCCEEEEEeCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCC----CEEEEEcCCC
Q psy6984         144 -VEDGHSDWVSCVRFSPNH-QNPIIVSAGWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDG----SLCASGGKDM  215 (380)
Q Consensus       144 -~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~  215 (380)
                       ....|...+.++.|+|+. ....+++++.++.+.+|+....+.  ...+.+|...|.+++|+|++    ++|++++.|+
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence             112567789999999962 234889999999998888877654  55667899999999999998    8999999999


Q ss_pred             cEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         216 NAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       216 ~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      .|++||+..+....... ..........++........  ...........++.....+....+..|...|.+++|+|++
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~  318 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQG--RSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG  318 (351)
T ss_dssp             CEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCccccccccc--ccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence            99999998764433221 11111111111211110000  0000011112223333334455566788899999999999


Q ss_pred             CEEEEeeCCCcEEEEecccce
Q psy6984         295 RQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       295 ~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      ++|++|+.||.|++|++..+.
T Consensus       319 ~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          319 TILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             CCEEEEETTSCEEEEEECTTS
T ss_pred             CEEEEecCCCcEEEEecCcCc
Confidence            999999999999999875543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-36  Score=262.96  Aligned_cols=252  Identities=30%  Similarity=0.478  Sum_probs=214.5

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      +.++...+.+|...|++++|+|+ +++|++|+.||.|++||+....     ....+.+|...|.++.|+|++++|++|+.
T Consensus        54 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  127 (312)
T 4ery_A           54 DGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSF  127 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             CcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCc-----EEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            34567788999999999999997 6899999999999999986543     23456789999999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      |+.|++||+.+++....+..|..+|.+++|+|+++++++++.|+.|++||+............+...+.+++|+|+++  
T Consensus       128 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  205 (312)
T 4ery_A          128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK--  205 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS--
T ss_pred             CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC--
Confidence            999999999999999999999999999999999999999999999999999877666655556777899999999764  


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEeeeCCccce---EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL---NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      +|++++.|+.|++||+++.+....+.+|....   ......++++++++|+.|+.|++||+.+++.+..+          
T Consensus       206 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~----------  275 (312)
T 4ery_A          206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL----------  275 (312)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE----------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh----------
Confidence            79999999999999999988877777776543   22333468899999999999999999877644322          


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee--CCCcEEEEec
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS--RDKTIKLWNT  311 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~  311 (380)
                                                           .+|...|.+++|+|++++|++++  .|++|++|+.
T Consensus       276 -------------------------------------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          276 -------------------------------------QGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             -------------------------------------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             -------------------------------------hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence                                                 23445678899999999999987  6999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-38  Score=284.60  Aligned_cols=291  Identities=13%  Similarity=0.209  Sum_probs=236.3

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLWD   92 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd   92 (380)
                      +|.+.|++++|+|+ +.+|++++.||.|++|++....... .....+.+|...|.+++|+|+ +++|++++.|+.|++||
T Consensus        65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAI-NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCC-CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccc-cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            68899999999997 6899999999999999987522111 134457789999999999998 89999999999999999


Q ss_pred             CCCCc------eee---eecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcceEEEeeCC-----CcCcEEEEEE
Q psy6984          93 LAAGK------TTR---RFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVEDG-----HSDWVSCVRF  157 (380)
Q Consensus        93 ~~~~~------~~~---~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~  157 (380)
                      +.+++      ...   .+..|...|.+++|+|+ +..+++++.|+.|++||+............     |...+.+++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~  222 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW  222 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEE
Confidence            98876      332   23678899999999999 789999999999999998876655444322     2678999999


Q ss_pred             ccCCCCCEEEEEeCCC---eEEEEeCCCc-eeeEeee-CCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         158 SPNHQNPIIVSAGWDR---MVKVWNLTNC-KLKINHS-GHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~---~v~iwd~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      +|++. .++++++.|+   .|++||+++. .....+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+
T Consensus       223 ~~~~~-~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~  301 (416)
T 2pm9_A          223 HPKNS-TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF  301 (416)
T ss_dssp             CSSCT-TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE
T ss_pred             CCCCC-CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee
Confidence            99854 3788999998   9999999985 4555566 7999999999999 9999999999999999999999988877


Q ss_pred             E-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec------------------------------
Q psy6984         232 V-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS------------------------------  280 (380)
Q Consensus       232 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  280 (380)
                      . |...+.+++|+|++...     +.....++.+.+|++...........                              
T Consensus       302 ~~~~~~v~~~~~s~~~~~~-----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (416)
T 2pm9_A          302 PARGNWCFKTKFAPEAPDL-----FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL  376 (416)
T ss_dssp             ECSSSCCCCEEECTTCTTE-----EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred             cCCCCceEEEEECCCCCCE-----EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence            4 67889999999987321     12233467788999876553221111                              


Q ss_pred             -----cccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         281 -----LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       281 -----~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                           +...+.+++|+|+|++|++++.||+|++|++.
T Consensus       377 ~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          377 QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence                 34567799999999999999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.2e-37  Score=274.23  Aligned_cols=285  Identities=14%  Similarity=0.141  Sum_probs=208.9

Q ss_pred             cceEEEEEccCCCEEEEEeCCC-------cEEEEECCCCcee----------eeecccCCCeEEEEEeCCCCEEEEEe--
Q psy6984          65 HFISDIVLSSDGNYALSGSWDK-------TLRLWDLAAGKTT----------RRFEDHTKDVLSVAFSVDNRQIVSSS--  125 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~-------~i~vwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~s~~--  125 (380)
                      .+|++++|+||+++|++|+.|.       .|++|++..+...          ..+..|...|.+++++  +..+++|.  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4699999999999999998643       5999998765321          2345777888888765  55666654  


Q ss_pred             ---------CCCcEEEEeCCCcc-eEEEe-------eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe
Q psy6984         126 ---------RDKTIKLWNTLAHC-KFTIV-------EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN  188 (380)
Q Consensus       126 ---------~d~~v~iwd~~~~~-~~~~~-------~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  188 (380)
                               .|+.+++|+..... .....       ...+...+.+++|+|+++...+++++.|++|++||+++.+....
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                     57789999864322 11111       12345678999999998754455677899999999999887766


Q ss_pred             eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE---EecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984         189 HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL---VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI  265 (380)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (380)
                      +. |...|.+++|+|+|+++++++.+ .+.+|+..+++.+...   .+...+.+++|+|++........  .......+.
T Consensus       173 ~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~--d~~~~~~i~  248 (365)
T 4h5i_A          173 IE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL--KKGKGIVLT  248 (365)
T ss_dssp             EE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE--SSSCCEEEE
T ss_pred             eC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec--CCcceeEEe
Confidence            64 77789999999999999999865 5677777777665433   35677999999999875433211  001112355


Q ss_pred             EEEcCCcee----eeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCC
Q psy6984         266 LYPINHGKM----ETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTK  341 (380)
Q Consensus       266 ~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (380)
                      .|+......    ...+..+...|++++|+|||++||+|+.|++|++||+.++.           .+..+        ..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~-----------~~~~~--------~~  309 (365)
T 4h5i_A          249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS-----------MSKIF--------KQ  309 (365)
T ss_dssp             EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-----------EEEEE--------TT
T ss_pred             ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc-----------EEEEe--------cC
Confidence            676655433    23456677889999999999999999999999999875433           22211        23


Q ss_pred             CCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         342 ADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       342 ~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      .|...|.+++|||||++||+||.|++|+||++.
T Consensus       310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             SSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            567789999999999999999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2e-36  Score=266.10  Aligned_cols=260  Identities=21%  Similarity=0.314  Sum_probs=200.3

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .....+.+|.+.|++++++|+ +.++++|+.|++|++||+....     ....+.+|...|.+++|+|++++|++++.|+
T Consensus        67 ~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~  140 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGT-----TYKRFVGHQSEVYSVAFSPDNRQILSAGAER  140 (343)
T ss_dssp             EEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSC-----EEEEEECCCSCEEEEEECSSTTEEEEEETTS
T ss_pred             cccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCc-----EEEEEcCCCCcEEEEEECCCCCEEEEEcCCC
Confidence            456688999999999999997 6899999999999999986542     2345778999999999999999999999999


Q ss_pred             cEEEEECCCCceeeee---cccCCCeEEEEEeCCC----------CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984          87 TLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVDN----------RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS  153 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~----------~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~  153 (380)
                      .|++||+.... ....   ..|...|.+++|+|++          .++++++.|+.|++||....  ......+|...|.
T Consensus       141 ~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~h~~~v~  217 (343)
T 2xzm_R          141 EIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHESNVN  217 (343)
T ss_dssp             CEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE--EEEEEECCSSCEE
T ss_pred             EEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc--eeEEEcCccccce
Confidence            99999997433 3222   3688899999999987          78999999999999994432  2233457889999


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH  233 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  233 (380)
                      +++|+|+++  +|++++.|+.|++||+...........+...|.+++|+|++++++++ .|+.+++||+.+++.....  
T Consensus       218 ~~~~s~~g~--~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~--  292 (343)
T 2xzm_R          218 HLSISPNGK--YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC--  292 (343)
T ss_dssp             EEEECTTSS--EEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE--
T ss_pred             EEEECCCCC--EEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE--
Confidence            999999765  79999999999999995433222222345579999999999887655 5778999999765422110  


Q ss_pred             cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       234 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                           .  +.+.. .                        .......++...+.+++|+|++++|++|+.||+|++|++.
T Consensus       293 -----~--~~~~~-~------------------------~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          293 -----T--IEAEP-I------------------------TKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             -----E--CCCCS-G------------------------GGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             -----E--eecCc-c------------------------hhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence                 0  00000 0                        0000112345678899999999999999999999999853

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.1e-37  Score=269.15  Aligned_cols=289  Identities=14%  Similarity=0.138  Sum_probs=225.7

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-EEEEEeCCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-YALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~   86 (380)
                      ......+|.+.|++++|+|+ +++|++++.||.|++|++......  .+.....+|...|.+++|+|+++ +|++|+.||
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg   79 (342)
T 1yfq_A            3 IVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTE--EEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             ceecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCcc--ccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence            44455699999999999997 689999999999999998754311  12234568999999999999999 999999999


Q ss_pred             cEEEEEC-CCCceeeeecc--cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC---------cceEEEeeCCCcCcEEE
Q psy6984          87 TLRLWDL-AAGKTTRRFED--HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA---------HCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        87 ~i~vwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~---------~~~~~~~~~~~~~~v~~  154 (380)
                      .|++||+ .+++. ..+..  |...|.+++|+| +..+++++.|+.|++||+..         ......  ..|...+.+
T Consensus        80 ~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~  155 (342)
T 1yfq_A           80 EILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFT  155 (342)
T ss_dssp             CEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEE
T ss_pred             eEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeCCceEE
Confidence            9999999 77655 66778  999999999999 99999999999999999764         322211  237788999


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCC-ce--eeEeeeCCccceEEEEEcC-CCCEEEEEcCCCcEEEEECCCC-----
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTN-CK--LKINHSGHTGYLNTVTVSP-DGSLCASGGKDMNAMLWDLNDG-----  225 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-----  225 (380)
                      ++|+|+.    +++++.|+.|++||+++ ..  .......|...+.+++|+| +++++++++.|+.+++|++...     
T Consensus       156 ~~~~~~~----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          156 MDTNSSR----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEECSSE----EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             EEecCCc----EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            9999863    88999999999999987 43  3334556788999999999 9999999999999999998765     


Q ss_pred             -cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         226 -KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       226 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                       +....+...                                    ...  .....+...|.+++|+|++++|++++.||
T Consensus       232 ~~~~~~~~~~------------------------------------~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  273 (342)
T 1yfq_A          232 SSKRFAFRCH------------------------------------RLN--LKDTNLAYPVNSIEFSPRHKFLYTAGSDG  273 (342)
T ss_dssp             CTTCEEEECC------------------------------------CCC--TTCCSSCCCEEEEEECTTTCCEEEEETTS
T ss_pred             cccceeeecc------------------------------------ccc--ccccccceeEEEEEEcCCCCEEEEecCCc
Confidence             221111100                                    000  00012345788999999999999999999


Q ss_pred             cEEEEecccceeeeEeecccceEEEeeCcccccccCCCC-CCceEEEEEecCCCEEEEEeeCCe
Q psy6984         305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD-PPMCLSLAWSTDGQTLFAGYSDNT  367 (380)
Q Consensus       305 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~g~~dg~  367 (380)
                      .|++||+..+..+           ..+         ..+ ...+.+++  |+|++|++|+.||.
T Consensus       274 ~i~vwd~~~~~~~-----------~~~---------~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          274 IISCWNLQTRKKI-----------KNF---------AKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CEEEEETTTTEEE-----------EEC---------CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             eEEEEcCccHhHh-----------hhh---------hcccCCCceEec--CCCCeEEEEecCCc
Confidence            9999987544322           211         223 55677887  99999999999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=272.41  Aligned_cols=279  Identities=16%  Similarity=0.225  Sum_probs=238.7

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      |.+.|++++|+|+ +++|++++.||.|++|+...      .....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       107 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          107 TTNQVTCLAWSHD-GNSIVTGVENGELRLWNKTG------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             -CBCEEEEEECTT-SSEEEEEETTSCEEEEETTS------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             CCCceEEEEEcCC-CCEEEEEeCCCeEEEEeCCC------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            6889999999997 68999999999999998322      1234567899999999999999999999999999999999


Q ss_pred             CCceeeeecccCCC---------------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984          95 AGKTTRRFEDHTKD---------------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        95 ~~~~~~~~~~h~~~---------------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  159 (380)
                      +++....+..+...               +.+++|+|++ .+++++.|+.|++||+......... ..|...|.+++|+|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL-IGHHGPISVLEFND  257 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE-CCCSSCEEEEEEET
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee-ccCCCceEEEEECC
Confidence            99998888877776               9999999975 5889999999999998776544433 47888999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceE
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIIT  238 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~  238 (380)
                      ++.  +|++++.|+.|++||+++.+....+.+|...+.+++|+|++ ++++++.|+.|++||+.+++.+..+. +...+.
T Consensus       258 ~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~  334 (425)
T 1r5m_A          258 TNK--LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF  334 (425)
T ss_dssp             TTT--EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             CCC--EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence            764  79999999999999999988877888899999999999999 99999999999999999998887775 577899


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCce--------------------eeeeeecccc--ceeEEEEeecCCE
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK--------------------METPFFSLFR--DVLSVAFSVDNRQ  296 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~--~v~~~~~s~~~~~  296 (380)
                      +++|+|++.+...      ...++.+.+|++..++                    ....+..+..  .|.+++|+|++++
T Consensus       335 ~~~~s~~~~~l~~------~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  408 (425)
T 1r5m_A          335 AGRISQDGQKYAV------AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK  408 (425)
T ss_dssp             EEEECTTSSEEEE------EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred             EEEEcCCCCEEEE------EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence            9999998765332      2356789999998776                    5666666755  8999999999999


Q ss_pred             EEEeeCCCcEEEEec
Q psy6984         297 IVSSSRDKTIKLWNT  311 (380)
Q Consensus       297 l~s~~~dg~v~iw~~  311 (380)
                      |++++.||.|++|++
T Consensus       409 l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          409 ISVAYSLQEGSVVAI  423 (425)
T ss_dssp             EEEEESSSCCEEEEC
T ss_pred             EEEEecCceEEEEee
Confidence            999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=256.87  Aligned_cols=280  Identities=20%  Similarity=0.360  Sum_probs=233.3

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT   98 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   98 (380)
                      .+.|+|+++  ++||+| .|++|++||+......   ....+.+|...|++++|+|++++|++|+.|+.|++||+.+++.
T Consensus        28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~~tg~~~---~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSG--NVLAVA-LDNSVYLWSASSGDIL---QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTT--SEEEEE-ETTEEEEEETTTCCEE---EEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEECCC--CEEEEE-eCCEEEEEECCCCCEE---EEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            577999976  466665 5899999998754321   1223567888999999999999999999999999999999999


Q ss_pred             eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEE
Q psy6984          99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW  178 (380)
Q Consensus        99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw  178 (380)
                      +..+..|...+.++.+  ++..+++++.++.+++|+............+|...+.++.+.+++.  ++++++.|+.|++|
T Consensus       102 ~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~i~iw  177 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR--HLASGGNDNLVNVW  177 (318)
T ss_dssp             EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             EEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC--EEEEEecCcceeEE
Confidence            9999999988876654  5679999999999999998766555555568899999999998764  79999999999999


Q ss_pred             eCCCcee----eEeeeCCccceEEEEEcCCCCE---EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984         179 NLTNCKL----KINHSGHTGYLNTVTVSPDGSL---CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       179 d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      |+++.+.    ......+...+.++.++|++..   +++++.++.|++||...........+...+..++|+|.......
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEE
Confidence            9987542    3344567788999999997663   34678899999999999998888888899999999998765332


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                          .....++.+.+|++.+++....+.+|...|++++|+|++++|+||+.||+|++||+.
T Consensus       258 ----~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          258 ----GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             ----EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ----EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence                223356889999999999988999999999999999999999999999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=271.15  Aligned_cols=261  Identities=19%  Similarity=0.305  Sum_probs=212.0

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC--CCEEEEEeC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD--GNYALSGSW   84 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~   84 (380)
                      ++...+.+|.+.|++++|+|+ +.+|++|+.||.|++|++....   ......+.+|...|++++|+++  +++|++++.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTE---EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCc---ceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence            356778999999999999998 6899999999999999986321   1223457789999999999977  999999999


Q ss_pred             CCcEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEEcc
Q psy6984          85 DKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        85 d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~  159 (380)
                      ||.|++||+.+++  ....+..|...|.+++|+|+  +..+++++.|+.|++||+.... ........|...|.+++|+|
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            9999999999887  67777889999999999999  9999999999999999987652 22333457888999999999


Q ss_pred             CC-----------CCCEEEEEeCCCeEEEEeCCCce----eeEeeeCCccceEEEEEcCC---CCEEEEEcCCCcEEEEE
Q psy6984         160 NH-----------QNPIIVSAGWDRMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPD---GSLCASGGKDMNAMLWD  221 (380)
Q Consensus       160 ~~-----------~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d  221 (380)
                      ..           ...+|++++.|+.|++||++...    ....+.+|...|.+++|+|+   +++|++++.|+.|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence            41           23489999999999999997643    34466789999999999999   89999999999999999


Q ss_pred             CCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee
Q psy6984         222 LNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS  301 (380)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  301 (380)
                      +..+......                                          .......+...+.+++|+|++++|++++
T Consensus       238 ~~~~~~~~~~------------------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          238 QDNEQGPWKK------------------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             ESSTTSCCEE------------------------------------------EESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             CCCCCcccee------------------------------------------eeeccccCCCcEEEEEEcCCCCEEEEec
Confidence            8765311000                                          0001112345688999999999999999


Q ss_pred             CCCcEEEEeccc
Q psy6984         302 RDKTIKLWNTLA  313 (380)
Q Consensus       302 ~dg~v~iw~~~~  313 (380)
                      .||.|++|++..
T Consensus       276 ~dg~i~iw~~~~  287 (379)
T 3jrp_A          276 GDNKVTLWKENL  287 (379)
T ss_dssp             SSSSEEEEEEEE
T ss_pred             CCCcEEEEeCCC
Confidence            999999999864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-36  Score=273.15  Aligned_cols=290  Identities=19%  Similarity=0.261  Sum_probs=226.5

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCCC
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      ....++++|++..++++++.||.|++|++...... ......+.+|...|++++|+| ++++|++|+.||.|++||+.++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            34557788875445666899999999998643211 112345679999999999999 9999999999999999999987


Q ss_pred             -------ceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEE
Q psy6984          97 -------KTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        97 -------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                             +....+.+|...|.+++|+|++ ..+++++.|+.|++||+........+. ..|...|.+++|+|++.  +|+
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~  192 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA--LIC  192 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS--CEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC--EEE
Confidence                   5677888999999999999998 699999999999999988776655543 67899999999999764  689


Q ss_pred             EEeCCCeEEEEeCCCceeeEee-eCCccc-eEEEEEcCCCCEEEEE---cCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         168 SAGWDRMVKVWNLTNCKLKINH-SGHTGY-LNTVTVSPDGSLCASG---GKDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       168 s~~~d~~v~iwd~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                      +++.|+.|++||+++.+..... .+|... +.++.|+|+++++++|   +.|+.|++||+++++....            
T Consensus       193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~------------  260 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS------------  260 (402)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE------------
T ss_pred             EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce------------
Confidence            9999999999999998887777 678765 8999999999999999   8999999999976532000            


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE-eeCCCcEEEEeccccee-eeEe
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCK-FTIV  320 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~v~iw~~~~~~~-~~~~  320 (380)
                                             ..          ...+...+.+++|+|++++|++ |+.||.|++|++..+.. +.  
T Consensus       261 -----------------------~~----------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~--  305 (402)
T 2aq5_A          261 -----------------------LQ----------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLH--  305 (402)
T ss_dssp             -----------------------EE----------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEE--
T ss_pred             -----------------------EE----------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceE--
Confidence                                   00          0012345778999999999864 55799999998754331 11  


Q ss_pred             ecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         321 DLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                            .+...          .+...+.+++|+|++.++++  .++.+++|++..
T Consensus       306 ------~l~~~----------~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          306 ------YLSMF----------SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             ------EEEEE----------CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             ------eeccc----------ccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence                  11111          13345779999999999875  466999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.4e-35  Score=269.26  Aligned_cols=286  Identities=27%  Similarity=0.437  Sum_probs=225.6

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      ...+|...|+++.+.   ++++++|+.||+|++||+....     ....+.+|...|.++.+  ++++|++|+.||.|++
T Consensus       128 ~~~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v  197 (435)
T 1p22_A          128 CRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV  197 (435)
T ss_dssp             CCCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             cccCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence            345677889999884   5789999999999999986432     23456789999999988  7899999999999999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ||+.+++....+..|...|.+++|+  +..+++++.|+.|++||+......  .....+|...|.++.+..    ..+++
T Consensus       198 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~s  271 (435)
T 1p22_A          198 WDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD----KYIVS  271 (435)
T ss_dssp             EESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET----TEEEE
T ss_pred             EECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCC----CEEEE
Confidence            9999999999999999999999996  459999999999999998765433  244568899999999932    37999


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      ++.|+.|++||+++.+....+.+|...+.++.+  +++++++|+.|+.|++||+++++.+..+.                
T Consensus       272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------  333 (435)
T 1p22_A          272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE----------------  333 (435)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC----------------
T ss_pred             EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe----------------
Confidence            999999999999999988888999999999988  46899999999999999998876554331                


Q ss_pred             ceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEE
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV  328 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  328 (380)
                                                     .|...|.+++|  ++++|++|+.||.|++||+..+.....  ......+
T Consensus       334 -------------------------------~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~~~~~  378 (435)
T 1p22_A          334 -------------------------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA--PAGTLCL  378 (435)
T ss_dssp             -------------------------------CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS--CTTTTEE
T ss_pred             -------------------------------CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc--cccchhe
Confidence                                           22334666666  788999999999999998744321000  0000011


Q ss_pred             EeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         329 EELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      .         ....|...|.+++|  ++++|++|+.||.|++|++...
T Consensus       379 ~---------~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          379 R---------TLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             E---------EECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             e---------eccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            1         12345567788888  8899999999999999998643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-36  Score=266.50  Aligned_cols=260  Identities=22%  Similarity=0.308  Sum_probs=209.5

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEE
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA--AGKTTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLW  133 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iw  133 (380)
                      ..+.+|...|++++|+|++++|++|+.||.|++||+.  +.+....+..|...|.+++|+++  +.++++++.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            4568999999999999999999999999999999997  55677788899999999999987  9999999999999999


Q ss_pred             eCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce--eeEeeeCCccceEEEEEcC-------
Q psy6984         134 NTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK--LKINHSGHTGYLNTVTVSP-------  203 (380)
Q Consensus       134 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~-------  203 (380)
                      |+..... .......|...|.+++|+|+....+|++++.|+.|++||++...  ......+|...|.+++|+|       
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            9876542 33344578889999999997323489999999999999998763  3445678899999999999       


Q ss_pred             ------CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984         204 ------DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP  277 (380)
Q Consensus       204 ------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (380)
                            ++.++++++.|+.|++||++.+......                                           ...
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------~~~  201 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL-------------------------------------------EST  201 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEE-------------------------------------------EEE
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceee-------------------------------------------EEE
Confidence                  6999999999999999998754321110                                           112


Q ss_pred             eeccccceeEEEEeec---CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEec
Q psy6984         278 FFSLFRDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST  354 (380)
Q Consensus       278 ~~~~~~~v~~~~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  354 (380)
                      +..|...|.+++|+|+   +++|++++.||.|++|++..+....         ....      .....+...+.+++|+|
T Consensus       202 ~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~------~~~~~~~~~v~~~~~s~  266 (379)
T 3jrp_A          202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW---------KKTL------LKEEKFPDVLWRASWSL  266 (379)
T ss_dssp             ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC---------EEEE------SSSSCCSSCEEEEEECS
T ss_pred             EecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccc---------eeee------eccccCCCcEEEEEEcC
Confidence            2244567889999999   8999999999999999875432100         0000      11233556788999999


Q ss_pred             CCCEEEEEeeCCeEEEEEeee
Q psy6984         355 DGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       355 dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +|++|++++.||.|++|++..
T Consensus       267 ~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          267 SGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCEEEEecCCCcEEEEeCCC
Confidence            999999999999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.9e-35  Score=266.59  Aligned_cols=282  Identities=21%  Similarity=0.370  Sum_probs=233.2

Q ss_pred             ccccCCCcce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984          58 KRLKGHSHFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  136 (380)
Q Consensus        58 ~~~~~h~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~  136 (380)
                      ..+.+|...+ .++.+  ++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++ .+++|+.|+.|++||+.
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~  191 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK  191 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence            4577898875 55555  57899999999999999999999999999999999999999988 99999999999999988


Q ss_pred             CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-----------------------eEeeeCCc
Q psy6984         137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-----------------------KINHSGHT  193 (380)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----------------------~~~~~~~~  193 (380)
                      +...... ..+|...|.++++++.....++++++.|+.|++||+++...                       .....+|.
T Consensus       192 ~~~~~~~-~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (464)
T 3v7d_B          192 KGCCTHV-FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM  270 (464)
T ss_dssp             TTEEEEE-ECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred             CCcEEEE-ECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence            7655444 45789999999999755556899999999999999986542                       33456787


Q ss_pred             cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc
Q psy6984         194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG  272 (380)
Q Consensus       194 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (380)
                      ..+.++  +++++++++++.|+.|++||+.+++.+..+. |...+.+++|+|++....      ....++.+.+|++.++
T Consensus       271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~------sg~~dg~i~vwd~~~~  342 (464)
T 3v7d_B          271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI------SASMDTTIRIWDLENG  342 (464)
T ss_dssp             SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE------EEETTSCEEEEETTTT
T ss_pred             ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE------EEeCCCcEEEEECCCC
Confidence            777776  6789999999999999999999999888774 788899999999876532      3345788999999999


Q ss_pred             eeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEE
Q psy6984         273 KMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAW  352 (380)
Q Consensus       273 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (380)
                      +....+..|...|.+++|+  +++|++++.||+|++||+.........                     .+...+..++|
T Consensus       343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---------------------~~~~~~~~~~~  399 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---------------------HHTNLSAITTF  399 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------------------ECTTCCCEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------------------cCCCCccEEEE
Confidence            9888888899999999997  689999999999999997653322111                     01223446789


Q ss_pred             ecCCCEEEEEeeCCeEEEEEeee
Q psy6984         353 STDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       353 s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +|++++|++|+ ||.|++||+..
T Consensus       400 ~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          400 YVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             EECSSEEEEEE-TTEEEEEETTT
T ss_pred             EeCCCEEEEec-CCeEEEEECCC
Confidence            99999999988 99999999854

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-34  Score=261.61  Aligned_cols=278  Identities=20%  Similarity=0.337  Sum_probs=225.5

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      +.+.+.|+++ +.|++|. |+.|+|||..+++....+.  .|...|++++|+|+|++|++|+.|+.|++||+.+......
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            4678999975 5777765 9999999999998877654  6778899999999999999999999999999887665544


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                       ..+|...+.++.+++    .+|++|+.|+.+++||..... ....+.+|...+..+.++|+++++++++.|+.+++|+.
T Consensus       185 -~~~h~~~v~~~s~~~----~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~  259 (420)
T 4gga_A          185 -MTSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  259 (420)
T ss_dssp             -ECCCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             -EeCCCCceEEEeeCC----CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence             458999999988864    379999999999999988643 44567789999999999999999999999999999999


Q ss_pred             CCCcE-----EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984         223 NDGKH-----LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       223 ~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  297 (380)
                      ..++.     .....+...|.+++|+|.......   ......++.+.+|++.+++....+. ....+.++.|+|+++.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la---~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~l  335 (420)
T 4gga_A          260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA---TGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKEL  335 (420)
T ss_dssp             SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE---EEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred             ccccccceeeeeecccCCceeeeeeCCCcccEEE---EEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeE
Confidence            87652     223357788999999997654322   2233456789999999988766554 45678899999999998


Q ss_pred             EEee--CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         298 VSSS--RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       298 ~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++++  .|+.|++||+.....           +..+         ..|...|.+++|+|||++|++|+.|++|+|||+.
T Consensus       336 v~~sg~~d~~I~iwd~~~~~~-----------v~~l---------~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          336 ISGHGFAQNQLVIWKYPTMAK-----------VAEL---------KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEEECTTTCCEEEEETTTCCE-----------EEEE---------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEecCCCEEEEEECCCCcE-----------EEEE---------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            8765  689999998754332           2222         3466779999999999999999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.5e-35  Score=265.42  Aligned_cols=288  Identities=16%  Similarity=0.225  Sum_probs=225.9

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      .+.+| ..+....++|+ +++|++++.||.|++|++....     ....+.+|...|++++|+|++++|++|+.|+.|++
T Consensus        93 ~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A           93 MLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNL-----QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             TSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCE-----EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcc-----eeeecccccCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            34444 34444457776 6899999999999999976432     23345789999999999999999999999999999


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC--CCcCcEEEEEEccC--------
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED--GHSDWVSCVRFSPN--------  160 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~--------  160 (380)
                      ||+.+++....+..|...|.+++|+|+++.+++++.|+.|++||+.+.........  .+...+.++++.|.        
T Consensus       166 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  245 (420)
T 3vl1_A          166 WSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI  245 (420)
T ss_dssp             EETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred             EeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence            99999999999999999999999999999999999999999999887665544432  34556666666432        


Q ss_pred             -----------CCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcE
Q psy6984         161 -----------HQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       161 -----------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~  227 (380)
                                 ....+|++++.|+.|++||+++.+...... .|...+.+++|+|+++ +|++|+.|+.|++||+++++.
T Consensus       246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred             ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence                       123478999999999999999877665554 5788999999999999 999999999999999998753


Q ss_pred             -EEEEE--ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee---------eeeeeccccceeEEEEeecCC
Q psy6984         228 -LHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM---------ETPFFSLFRDVLSVAFSVDNR  295 (380)
Q Consensus       228 -~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~s~~~~  295 (380)
                       +..+.  +...+..+.+. ++.+      +.....++.+.+|++.....         ...+..+...+.+++|+|+++
T Consensus       326 ~~~~~~~~~~~~v~~~~~~-~~~~------l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          326 PVGEFLINEGTPINNVYFA-AGAL------FVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             CSEEEEESTTSCEEEEEEE-TTEE------EEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             chhhhhccCCCCceEEEeC-CCCE------EEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence             44443  56677777654 4432      22334577889999876321         223445667899999999999


Q ss_pred             ---EEEEeeCCCcEEEEecc
Q psy6984         296 ---QIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       296 ---~l~s~~~dg~v~iw~~~  312 (380)
                         .+++++.+|.+++|++.
T Consensus       399 ~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          399 SNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             SSCEEEEEETTTEEEEEESC
T ss_pred             CcceEEEEcCCceEEEEecc
Confidence               77788889999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=265.46  Aligned_cols=307  Identities=21%  Similarity=0.280  Sum_probs=237.4

Q ss_pred             CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeeec------------
Q psy6984          37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRLWDLAAGKTTRRFE------------  103 (380)
Q Consensus        37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------------  103 (380)
                      .++.+++|++....     ....+.+|...|++++|+| ++++|++|+.||.|++||+.+++....+.            
T Consensus        21 ~~~~~~v~~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   95 (408)
T 4a11_B           21 AESTRRVLGLELNK-----DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP   95 (408)
T ss_dssp             HHHHHHHHTEEECT-----TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred             ccCcceeeccccCc-----ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccc
Confidence            34567888775432     2344678999999999999 99999999999999999999876655443            


Q ss_pred             -ccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC-CCCEEEEEeCCCeEEEEeC
Q psy6984         104 -DHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH-QNPIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       104 -~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d~~v~iwd~  180 (380)
                       .|...|.+++|+| ++..+++++.|+.|++||+..........  +...+.++.+.|.. ...++++++.|+.|++||+
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence             5899999999999 77899999999999999988766555443  56678999999865 3347899999999999999


Q ss_pred             CCceeeEeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCc-EEEEE----------------EecCceEEEEe
Q psy6984         181 TNCKLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGK-HLHTL----------------VHNDIITALCF  242 (380)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~----------------~~~~~i~~~~~  242 (380)
                      ++.+....+.+|...|.+++|+|+++ ++++++.|+.|++||++.+. .+..+                .+...+.+++|
T Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            99888888889999999999999998 58999999999999998765 22222                36778999999


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc-----cceeEEEEeecCCEEEEeeCCCcEEEEecccceee
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF-----RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                      +|++.+..      ....++.+.+|++..++.........     ..+........+..+++++.|+.|++|++..+..+
T Consensus       254 ~~~~~~l~------~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  327 (408)
T 4a11_B          254 TSDGLHLL------TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI  327 (408)
T ss_dssp             CTTSSEEE------EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred             cCCCCEEE------EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence            99876533      23356789999998876544332221     11112222334566777788999999987554332


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      .           .+         ..|...|.+++|+|+|++|++|+.||.|++|++...
T Consensus       328 ~-----------~~---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          328 T-----------ML---------KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             E-----------EE---------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred             e-----------ee---------ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence            2           11         234567889999999999999999999999998754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.9e-35  Score=257.73  Aligned_cols=274  Identities=16%  Similarity=0.231  Sum_probs=205.2

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC----ceeeeecccCCCeEEEEEeC--CCCEEEEEeCCCcEE
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSV--DNRQIVSSSRDKTIK  131 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~~~s~~~d~~v~  131 (380)
                      ..+.+|...|++++|+|++++|++|+.||.|++||+.++    +....+..|...|.+++|+|  ++.++++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346799999999999999999999999999999999876    45667788999999999999  699999999999999


Q ss_pred             EEeCCCcc--------eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-------------e
Q psy6984         132 LWNTLAHC--------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-------------S  190 (380)
Q Consensus       132 iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------------~  190 (380)
                      +||+....        ........|...|.+++|+|+....+|++++.|+.|++||+++.+.....             .
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99986542        23344457889999999999732458999999999999999875432211             2


Q ss_pred             CCccceEEEEEcCC---CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         191 GHTGYLNTVTVSPD---GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       191 ~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      .|...+.+++|+|+   +.++++++.|+.+.+|+...++....                                     
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  207 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA-------------------------------------  207 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE-------------------------------------
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee-------------------------------------
Confidence            57788999999997   89999999999998877655432110                                     


Q ss_pred             EcCCceeeeeeeccccceeEEEEeecC----CEEEEeeCCCcEEEEecccceeeeEeecccceE----------------
Q psy6984         268 PINHGKMETPFFSLFRDVLSVAFSVDN----RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKM----------------  327 (380)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~----------------  327 (380)
                              ..+..|...|.+++|+|++    ++|++|+.||.|++||+..+.............                
T Consensus       208 --------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
T 3f3f_A          208 --------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR  279 (351)
T ss_dssp             --------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------
T ss_pred             --------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccc
Confidence                    1122345678899999998    899999999999999976532111000000000                


Q ss_pred             --------EE--eeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         328 --------VE--ELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       328 --------~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                              ..  .............|...|.+++|+|+|++|++|+.||.|+||++...
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             -----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                    00  00000011122356778999999999999999999999999998743

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=247.72  Aligned_cols=278  Identities=20%  Similarity=0.338  Sum_probs=220.4

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      +.++++||+++ +|++| .|+.|+|||+.+++.++.+.  .|...|.+++|+|+++++++|+.|+.|++||..+......
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~  104 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  104 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence            36789999876 66665 59999999999999887664  6778899999999999999999999999999887765544


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      . .+|...+.++.+.+    .++++++.++.+++|+..... ......+|...+..+.++++++++++++.|+.|++||+
T Consensus       105 ~-~~h~~~~~~~~~~~----~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          105 M-TSHSARVGSLSWNS----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             E-ECCSSCEEEEEEET----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             e-cCccceEEEeecCC----CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            4 47888887776654    379999999999999987653 44566789999999999999999999999999999999


Q ss_pred             CCCcEE-----EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984         223 NDGKHL-----HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       223 ~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  297 (380)
                      ++++..     ....+...+..+.++|.......   .........+.+|+........ ...+...+..+.|+|+++.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~i~lwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~  255 (318)
T 4ggc_A          180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA---TGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHYKEL  255 (318)
T ss_dssp             SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE---EEECTTTCEEEEEETTTCCEEE-EEECSSCEEEEEEETTTTEE
T ss_pred             CCCcccccceeeecccCCceEEEEecCCCCcEEE---EEecCCCCEEEEEecccccccc-cccceeeeeeeeecccccce
Confidence            876532     22245677889999887654321   2233455678899987766543 34556778999999999988


Q ss_pred             EEee--CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         298 VSSS--RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       298 ~s~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ++++  .|+.|++||+.++..           +..+         ..|...|.+++|+|||++||+|+.||.|+|||+.
T Consensus       256 ~~~sg~~d~~i~iwd~~~~~~-----------~~~l---------~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          256 ISGHGFAQNQLVIWKYPTMAK-----------VAEL---------KGHTSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EEEECTTTCCEEEEETTTCCE-----------EEEE---------CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEcCCCEEEEEECCCCcE-----------EEEE---------cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            7754  799999998754332           2222         2466779999999999999999999999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.6e-36  Score=264.33  Aligned_cols=252  Identities=14%  Similarity=0.142  Sum_probs=194.4

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEe-----------eCCCeEEEeecCCCCCCcc----cccccccCCCcceEEEEEcc
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSC-----------SRDNTLIIWKLTRDDTNYG----VPQKRLKGHSHFISDIVLSS   74 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~-----------~~dg~v~vw~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~   74 (380)
                      .+|.+|...|.++++.++   .+++|           +.|+.+|+|++........    ........+...+.+++|+|
T Consensus        67 ~~l~~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp  143 (365)
T 4h5i_A           67 FALEDNDDSPTAIDASKG---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR  143 (365)
T ss_dssp             EECCTTSCCCCEEEEETT---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred             EEccCCCCceEEEEeCCC---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence            467899999999987643   45544           4678899998765432211    11122345667799999999


Q ss_pred             CCCEEEEE--eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE
Q psy6984          75 DGNYALSG--SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV  152 (380)
Q Consensus        75 ~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v  152 (380)
                      ||++|+++  +.|+.|+|||+.+++.+..+. |..+|.+++|+|||+++++++.++.+.+|..............|...|
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence            99998755  478999999999999888875 778899999999999999998766554444333333444556788889


Q ss_pred             EEEEEccCCCCCEEEEEeCCC----eEEEEeCCCcee----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         153 SCVRFSPNHQNPIIVSAGWDR----MVKVWNLTNCKL----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       153 ~~~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      .+++|+|++.  .+++++.|+    .++.|++.....    .....+|...|++++|+|+|++||+|+.|+.|+|||+.+
T Consensus       223 ~~v~fspdg~--~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          223 SKINFIADDT--VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEEEEETTE--EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             EEEEEcCCCC--EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence            9999999865  678887776    688899876543    234568889999999999999999999999999999988


Q ss_pred             CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                      ++.+..+                                              +.+|...|++++|||||++|+|||.|+
T Consensus       301 ~~~~~~~----------------------------------------------~~gH~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          301 LSMSKIF----------------------------------------------KQAHSFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             TEEEEEE----------------------------------------------TTSSSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CcEEEEe----------------------------------------------cCcccCCEEEEEECCCCCEEEEEeCCC
Confidence            7654332                                              123556788999999999999999999


Q ss_pred             cEEEEeccc
Q psy6984         305 TIKLWNTLA  313 (380)
Q Consensus       305 ~v~iw~~~~  313 (380)
                      +||||++..
T Consensus       335 tvrvw~ip~  343 (365)
T 4h5i_A          335 TIHIIKLPL  343 (365)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEcCC
Confidence            999999743

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-36  Score=272.43  Aligned_cols=319  Identities=12%  Similarity=0.186  Sum_probs=217.8

Q ss_pred             eeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEE----EeecCCCCCCcccccccc-cCCCcceEEEEEcc-CCCE
Q psy6984           5 TLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLI----IWKLTRDDTNYGVPQKRL-KGHSHFISDIVLSS-DGNY   78 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~----vw~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~   78 (380)
                      ......++..|...+..+.+.|... .+...+.++...    .|+...      .....+ .+|...|++++|+| ++++
T Consensus         6 ~~~~~~~~~~~~~~l~~~~~~p~~~-~~~~f~~~~~~~~~~~~w~~~g------~~~~~~~~~h~~~V~~~~~s~~~~~~   78 (437)
T 3gre_A            6 HHHGEGDVESIEKFLSTFKILPPLR-DYKEFGPIQEIVRSPNMGNLRG------KLIATLMENEPNSITSSAVSPGETPY   78 (437)
T ss_dssp             --------CCCGGGTTCC-CCCCGG-GCGGGCCCCCCCCCCCGGGCCC------CEEEEECTTTTSCEEEEEEECSSSCE
T ss_pred             cccCCCChhHHHHHhccCCCCCChh-chhhcCCccccccccccccccc------eEEeeeccCCCCceEEEEECCCCCCE
Confidence            3445566667777777776665421 111112222111    476432      123345 78999999999999 9999


Q ss_pred             EEEEeCCCcEEEEECCC---Cc---eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---CcceEEEe-----
Q psy6984          79 ALSGSWDKTLRLWDLAA---GK---TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL---AHCKFTIV-----  144 (380)
Q Consensus        79 l~s~~~d~~i~vwd~~~---~~---~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~---~~~~~~~~-----  144 (380)
                      |++|+.||.|++||+.+   +.   ....+ .|...|.+++|+|++..+++++.|+.|++||+.   .+......     
T Consensus        79 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i  157 (437)
T 3gre_A           79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECI  157 (437)
T ss_dssp             EEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccccee
Confidence            99999999999999876   43   22222 589999999999999999999999999999973   22221111     


Q ss_pred             ---e-CC--CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         145 ---E-DG--HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       145 ---~-~~--~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                         . ..  +...+.++.+.......+|++++.|+.|++||+++.+....+.+  |...|.+++|+|++++|++|+.|+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~  237 (437)
T 3gre_A          158 RKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI  237 (437)
T ss_dssp             EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC
T ss_pred             EEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe
Confidence               0 11  45567777755434455899999999999999999888877777  8899999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEE--ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         217 AMLWDLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      |++||+++++.+..+.  +...+.+++|+|                                            .|+|++
T Consensus       238 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------------------------------------------~~s~~~  273 (437)
T 3gre_A          238 IDIWDIRFNVLIRSWSFGDHAPITHVEVCQ--------------------------------------------FYGKNS  273 (437)
T ss_dssp             EEEEETTTTEEEEEEBCTTCEEEEEEEECT--------------------------------------------TTCTTE
T ss_pred             EEEEEcCCccEEEEEecCCCCceEEEEecc--------------------------------------------ccCCCc
Confidence            9999999887665542  222333333332                                            234568


Q ss_pred             CEEEEeeCCCcEEEEecccceeeeEeecccceEE-EeeCccc---c--cccCCCCCCceEEEEEecCCCEEEEEeeCCeE
Q psy6984         295 RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV-EELRPDV---V--SQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI  368 (380)
Q Consensus       295 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~---~--~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v  368 (380)
                      .+|++|+.||+|++||+..+.....+........ ..+.+..   .  ......+...+.+++|+ ++++|++|+.||.|
T Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i  352 (437)
T 3gre_A          274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI  352 (437)
T ss_dssp             EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred             cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence            8999999999999999877665544432211100 0011100   0  00112266778899999 88999999999999


Q ss_pred             EEEEeeee
Q psy6984         369 RVWQVSVT  376 (380)
Q Consensus       369 ~iw~~~~~  376 (380)
                      ++||+...
T Consensus       353 ~~wd~~~~  360 (437)
T 3gre_A          353 VMFSLNEL  360 (437)
T ss_dssp             EEEETTCG
T ss_pred             EEEECCCc
Confidence            99998644

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=7.3e-34  Score=258.81  Aligned_cols=283  Identities=25%  Similarity=0.408  Sum_probs=240.3

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++.++...+.+|.+.|+++.++   ++++++|+.||+|++|++....     ....+.+|...|.++.++  ++++++|+
T Consensus       147 ~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~s  216 (445)
T 2ovr_B          147 VTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGE-----CIHTLYGHTSTVRCMHLH--EKRVVSGS  216 (445)
T ss_dssp             TTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             CCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCc-----EEEEECCCCCcEEEEEec--CCEEEEEe
Confidence            4556778899999999999997   3589999999999999986532     234567899999999985  67899999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .|+.|++||+.+++....+..|...|.+++|  ++..+++++.|+.|++||.......... .+|...|.++.+.    .
T Consensus       217 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~----~  289 (445)
T 2ovr_B          217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYSLQFD----G  289 (445)
T ss_dssp             TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEEC----S
T ss_pred             CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe-cCCCCceEEEEEC----C
Confidence            9999999999999999999999999999998  7889999999999999998776554443 4788899999993    2


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE----ecCceEE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV----HNDIITA  239 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~i~~  239 (380)
                      ..+++++.|+.|++||+++.+....+.+|...+.++.+  +++++++++.|+.|++||+.+++.+..+.    +...+.+
T Consensus       290 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  367 (445)
T 2ovr_B          290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC  367 (445)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEE
Confidence            37999999999999999999888888899988888876  46799999999999999999999888875    6778999


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee-----eccccceeEEEEeecCCEEEEeeCCCc----EEEEe
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF-----FSLFRDVLSVAFSVDNRQIVSSSRDKT----IKLWN  310 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~----v~iw~  310 (380)
                      ++|++.  +      +.....++.+.+|++..++....+     ..+...|++++|+|++.++++|+.||+    |.+||
T Consensus       368 ~~~~~~--~------l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          368 LQFNKN--F------VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEECSS--E------EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEECCC--E------EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEE
Confidence            998643  1      223345788999999998877666     356678999999999999999999998    99998


Q ss_pred             ccc
Q psy6984         311 TLA  313 (380)
Q Consensus       311 ~~~  313 (380)
                      +..
T Consensus       440 f~~  442 (445)
T 2ovr_B          440 FDV  442 (445)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=255.03  Aligned_cols=289  Identities=16%  Similarity=0.252  Sum_probs=220.9

Q ss_pred             cccccCCCcceEEEEEccC---CCEEEEEeCCCcEEEEECCC-Ccee-eeecccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q psy6984          57 QKRLKGHSHFISDIVLSSD---GNYALSGSWDKTLRLWDLAA-GKTT-RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIK  131 (380)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~  131 (380)
                      ...+.+|...|++++|+|+   |++|++|+.||.|++||+.+ ++.. ..+..|...|.+++|+|+++++++++.|+.|+
T Consensus        32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~  111 (368)
T 3mmy_A           32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK  111 (368)
T ss_dssp             EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence            3456899999999999999   69999999999999999987 5444 67788999999999999999999999999999


Q ss_pred             EEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984         132 LWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       132 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                      +||+........  ..|...|.+++|++.....+|++++.|+.|++||+++.+....+..+. .+.++.+.  +..++++
T Consensus       112 iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~  186 (368)
T 3mmy_A          112 MWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVA  186 (368)
T ss_dssp             EEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEE
T ss_pred             EEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEE
Confidence            999887665543  358889999999444344579999999999999999887776666554 45555555  4588889


Q ss_pred             cCCCcEEEEECCCCcEEEEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce---eeeeeecccc--
Q psy6984         212 GKDMNAMLWDLNDGKHLHTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK---METPFFSLFR--  283 (380)
Q Consensus       212 ~~d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--  283 (380)
                      +.++.+.+|++..........   .......+++.++.......  +.....++.+.+|++....   ....+..+..  
T Consensus       187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTG--FALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEE--EEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCe--EEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence            999999999998765443332   23445566665544331111  3344567888999988763   3334444443  


Q ss_pred             ----------ceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEe
Q psy6984         284 ----------DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS  353 (380)
Q Consensus       284 ----------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  353 (380)
                                .|.+++|+|++++|++|+.||.|++||+..+..+           ..+         ..+...+.+++|+
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~---------~~~~~~v~~~~~s  324 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL-----------KTS---------EQLDQPISACCFN  324 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE-----------EEC---------CCCSSCEEEEEEC
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE-----------EEe---------cCCCCCceEEEEC
Confidence                      6999999999999999999999999987544322           211         2345578899999


Q ss_pred             cCCCEEEEEeeCCeEEEEE
Q psy6984         354 TDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       354 ~dg~~l~~g~~dg~v~iw~  372 (380)
                      |+|++|++|+.|+..+.|+
T Consensus       325 ~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          325 HNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             TTSSCEEEEECCCSTTCGG
T ss_pred             CCCCeEEEEeccccccccc
Confidence            9999999999988554443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.7e-34  Score=275.83  Aligned_cols=265  Identities=25%  Similarity=0.366  Sum_probs=206.7

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      ....+.+|.+.|++++++|+ +.+|++|+.||+|++||+....     ....+.+|...|.+++|+|++++|++|+.|+.
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  495 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGV-----STRRFVGHTKDVLSVAFSLDNRQIVSASRDRT  495 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             ccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCc-----ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence            45678999999999999998 6899999999999999986432     23457899999999999999999999999999


Q ss_pred             EEEEECCCCceeeee---cccCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          88 LRLWDLAAGKTTRRF---EDHTKDVLSVAFSVDN--RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        88 i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~--~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      |++||..........   ..|...|.+++|+|++  ..+++++.|+.|++||+........ ..+|...|.+++|+|++.
T Consensus       496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~-~~~h~~~v~~v~~spdg~  574 (694)
T 3dm0_A          496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST-LAGHTGYVSTVAVSPDGS  574 (694)
T ss_dssp             EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSS
T ss_pred             EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-EcCCCCCEEEEEEeCCCC
Confidence            999998655333222   4688899999999987  5899999999999999876554433 458999999999999764


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                        +|++++.|+.|++||+++.+...... +...+.+++|+|++.++++++ ++.|++||+++++.+..+...........
T Consensus       575 --~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~  650 (694)
T 3dm0_A          575 --LCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA  650 (694)
T ss_dssp             --EEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC------
T ss_pred             --EEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccc
Confidence              79999999999999999988766554 346799999999998887765 55699999999887766532211100000


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      ...+.                            .....+...+.+++|+|+|++|++|+.||+|++|++
T Consensus       651 ~~~~~----------------------------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          651 DNSGP----------------------------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             --------------------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             ccccc----------------------------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence            00000                            000011123678999999999999999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=267.01  Aligned_cols=308  Identities=10%  Similarity=0.072  Sum_probs=226.1

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      +-..+|.+++|+|+ +.++||++.|++|+  +...        .+.+.+|...|.+++|+|+|       .++.+.+|+.
T Consensus        13 ~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~~~--------~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           13 EFEDWKNNLTWARD-GTLYLTTFPDISIG--QPKY--------AKDINCNSKNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CCSSSSCCEEECTT-SCEEEECSSSEEEE--EECC--------CSCCSSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             HhhccEEEEEECCC-CCEEEEEcCCceee--cccc--------cceecCCCccEEEEEECCCC-------CcceEEEEeC
Confidence            45689999999998 79999999999999  5321        12347899999999999999       4555555554


Q ss_pred             CCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-----cEEEEEEccCCCCCEEE
Q psy6984          94 AAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD-----WVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        94 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~  167 (380)
                      .   ....+. .|...|.+++|+|+|..+|+++.||.+++||...  ..... . |..     .+.+++|+|+++  +|+
T Consensus        75 ~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~--~LA  145 (588)
T 2j04_A           75 Q---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIES--SIV  145 (588)
T ss_dssp             C---SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSS--CEE
T ss_pred             C---CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCC--EEE
Confidence            3   222222 4578899999999999999999999999999533  22222 3 443     599999999876  699


Q ss_pred             EEeCCCeEEEEeCCCcee-------eEee----eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE---EEEE--
Q psy6984         168 SAGWDRMVKVWNLTNCKL-------KINH----SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH---LHTL--  231 (380)
Q Consensus       168 s~~~d~~v~iwd~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~--  231 (380)
                      +|+.||+|++||+.+...       ...+    .+|...|.+++|+|+|  +++++.|+.+++||+..+..   ...+  
T Consensus       146 sgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~  223 (588)
T 2j04_A          146 VGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN  223 (588)
T ss_dssp             EEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred             EEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence            999999999999988642       2333    5678899999999999  78889999999999988763   2344  


Q ss_pred             EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEE--eecCCEEEEeeCCCcEEEE
Q psy6984         232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAF--SVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~v~iw  309 (380)
                      .|...|.+++|+ + ...      +.. ..+.+.+|+...++......+|...+.+++|  +|++..|+++++||+ ++|
T Consensus       224 ~h~~~V~svaFs-g-~~L------ASa-~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          224 ASRRKITDLKIV-D-YKV------VLT-CPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             CCSSCCCCEEEE-T-TEE------EEE-CSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             cccCcEEEEEEE-C-CEE------EEE-eCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence            356789999998 3 221      111 2478999999988885555588899999999  999999999999999 999


Q ss_pred             ecccceeeeEeecccc------eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee
Q psy6984         310 NTLAHCKFTIVDLETK------KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS  364 (380)
Q Consensus       310 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~  364 (380)
                      ....   +. +.....      +.+.-....-.......+...|.+++|||||+.+|++++
T Consensus       294 ~~d~---~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          294 LEDE---LH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             ESSS---EE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             eecc---EE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            8641   11 111110      000000000000111122445889999999999998763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.7e-34  Score=253.06  Aligned_cols=264  Identities=16%  Similarity=0.194  Sum_probs=207.0

Q ss_pred             ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      +..|...|++++|+|++++|++++.|+.|++||+.+++  ....+..|...|.+++|+|+++++++++.|+.|++||+..
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            34588899999999999999999999999999999887  7888889999999999999999999999999999999866


Q ss_pred             cceE-EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce----eeEeeeCCccceEEEEEcCCCCEEEEEc
Q psy6984         138 HCKF-TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK----LKINHSGHTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       138 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      .... ......|...|.+++|+|++.  +|++++.|+.|++||++...    ......+|...|.+++|+|++++|++++
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            5433 233357888999999999754  79999999999999998765    2233356888999999999999999999


Q ss_pred             CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         213 KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       213 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      .|+.+++||+.........      .     + ..+.                 .....++....+..+...+.+++|+|
T Consensus       162 ~dg~i~~~d~~~~~~~~~~------~-----~-~~~~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERP------A-----P-TPWG-----------------SKMPFGELMFESSSSCGWVHGVCFSA  212 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCC------C-----C-BTTB-----------------SCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             CCCCEEEEEcccccccccc------c-----c-cccc-----------------cccchhhheEecCCCCCeEEEEEECC
Confidence            9999999998643210000      0     0 0000                 00112223333445667899999999


Q ss_pred             cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         293 DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       293 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ++++|++++.||.|++||+..+..+..           +         ..+...+.+++|+|+|++|++| .|+.|++|+
T Consensus       213 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-----------~---------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~  271 (372)
T 1k8k_C          213 NGSRVAWVSHDSTVCLADADKKMAVAT-----------L---------ASETLPLLAVTFITESSLVAAG-HDCFPVLFT  271 (372)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGTTEEEE-----------E---------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceeEE-----------E---------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEE
Confidence            999999999999999998754432221           1         1234457899999999999887 899999999


Q ss_pred             eee
Q psy6984         373 VSV  375 (380)
Q Consensus       373 ~~~  375 (380)
                      +..
T Consensus       272 ~~~  274 (372)
T 1k8k_C          272 YDS  274 (372)
T ss_dssp             EET
T ss_pred             ccC
Confidence            975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-33  Score=253.47  Aligned_cols=252  Identities=17%  Similarity=0.283  Sum_probs=206.7

Q ss_pred             EeEEecC-cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           8 LRGTLNG-HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~-h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      +...+.. |.+.|++++|+|+ +++|++|+.||.|++|++....     ....+.+|...|.++.|  ++++|++|+.|+
T Consensus       125 ~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  196 (401)
T 4aez_A          125 VSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQT-----KLRTMAGHQARVGCLSW--NRHVLSSGSRSG  196 (401)
T ss_dssp             EEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             EeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCe-----EEEEecCCCCceEEEEE--CCCEEEEEcCCC
Confidence            3444443 8999999999997 6899999999999999986542     23456789999999999  568999999999


Q ss_pred             cEEEEECC-CCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          87 TLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        87 ~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      .|++||+. .+.....+..|...|.+++|+|++..+++++.|+.|++||+......... ..|...|.+++|+|++.. +
T Consensus       197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~-l  274 (401)
T 4aez_A          197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-TNHNAAVKAVAWCPWQSN-L  274 (401)
T ss_dssp             EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE-CCCSSCCCEEEECTTSTT-E
T ss_pred             CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe-cCCcceEEEEEECCCCCC-E
Confidence            99999998 56677888899999999999999999999999999999998876554443 468889999999997654 6


Q ss_pred             EEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEE--EcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         166 IVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS--GGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       166 l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      +++++  .|+.|++||+.+.+....+. +...+.+++|+|+++++++  |+.|+.|++||+.+++.....          
T Consensus       275 l~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~----------  343 (401)
T 4aez_A          275 LATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV----------  343 (401)
T ss_dssp             EEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE----------
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE----------
Confidence            77765  79999999999887766664 5678999999999999998  558999999998765432211          


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                                                         .+..|...|.+++|+|++++|++++.||.|++|++..+.
T Consensus       344 -----------------------------------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          344 -----------------------------------DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             -----------------------------------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             -----------------------------------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence                                               112344568899999999999999999999999976543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.7e-35  Score=260.26  Aligned_cols=210  Identities=17%  Similarity=0.209  Sum_probs=169.9

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ++...+.+|.+.|++++|+|+ +++|++++.||+|++|++.....  ..+...+.+|...|.+++|+|++++|++++.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  122 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGT--WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR  122 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------C--CCCEEECCCCSSCEEEEECCTTSSCCEEEESSS
T ss_pred             EEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCc--eeeeeEecccCCceEEEEECCCCCEEEEEecCC
Confidence            677889999999999999998 68999999999999999875431  112345678999999999999999999999999


Q ss_pred             cEEEEECCCCc---eeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc-----------------ceEEEee
Q psy6984          87 TLRLWDLAAGK---TTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-----------------CKFTIVE  145 (380)
Q Consensus        87 ~i~vwd~~~~~---~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~-----------------~~~~~~~  145 (380)
                      .|++||+.+++   ....+.. |...|.+++|+|+++++++++.|+.|++||+...                 .......
T Consensus       123 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (377)
T 3dwl_C          123 VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY  202 (377)
T ss_dssp             CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC
T ss_pred             eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc
Confidence            99999999876   3666777 9999999999999999999999999999997421                 1122222


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                       +|...|.+++|+|+++  +|++++.|+.|++||+.+.+.    ...+.+|...|.+++|+|++++|++++.++.+ +|+
T Consensus       203 -~~~~~v~~~~~sp~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          203 -PSGGWVHAVGFSPSGN--ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             -CCSSSEEEEEECTTSS--CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred             -cCCceEEEEEECCCCC--EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence             7889999999999865  699999999999999998776    66778899999999999999999999877665 676


Q ss_pred             CC
Q psy6984         222 LN  223 (380)
Q Consensus       222 ~~  223 (380)
                      ..
T Consensus       279 ~~  280 (377)
T 3dwl_C          279 GN  280 (377)
T ss_dssp             CC
T ss_pred             eC
Confidence            54

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.7e-34  Score=257.62  Aligned_cols=275  Identities=15%  Similarity=0.131  Sum_probs=214.4

Q ss_pred             EeEEecCcccceEEEEeCCC---CC---CeEEEeeCCCeEEEeecCCCCCCcccccccccCC-----CcceEEEEEc---
Q psy6984           8 LRGTLNGHNGWVTQIATNPK---FP---DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH-----SHFISDIVLS---   73 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~---~~---~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~---   73 (380)
                      +...+.+|...|+++.|+|+   .+   .+|++++.||.|++|++.............+..|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            56778899999999999986   25   6999999999999999876543222223456677     5889999999   


Q ss_pred             -cCCCE-EEEEeCCCcEEEEECCC------Cceee-----ee-------cccCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q psy6984          74 -SDGNY-ALSGSWDKTLRLWDLAA------GKTTR-----RF-------EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW  133 (380)
Q Consensus        74 -~~~~~-l~s~~~d~~i~vwd~~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iw  133 (380)
                       |++++ |++++.|+.|++||+.+      ++.+.     .+       ..|...|.+++|+|++ .+++++.|+.|++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999988      66655     66       4488899999999999 99999999999999


Q ss_pred             eCCCcceEEEeeCC---C---cCcEEEEEEccCCCCCEEEEEeCC---CeEEEEeCCCceeeEeeeC-------------
Q psy6984         134 NTLAHCKFTIVEDG---H---SDWVSCVRFSPNHQNPIIVSAGWD---RMVKVWNLTNCKLKINHSG-------------  191 (380)
Q Consensus       134 d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~-------------  191 (380)
                      |+........+. .   |   ...+.+++|+|++.  +|++++.|   +.|++||+++.+....+.+             
T Consensus       213 d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~--~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          213 ELSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS--LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             ETTTTEEEEEEE-CCC---CCCCCEEEEEECSSTT--EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             ECCCCceeEEEe-ccccccccCCccceEEECCCCC--EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            988765554443 4   7   88899999999754  78999999   9999999999888888877             


Q ss_pred             CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984         192 HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH  271 (380)
Q Consensus       192 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (380)
                      |...|.+++|+|++++|++++.|+.|++||+.+++.+..+.....      ......            +       ...
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~------------~-------~~~  344 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD------DIEIEE------------D-------ILA  344 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG------GCSSGG------------G-------CCC
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccC------cccchh------------h-------hhc
Confidence            999999999999999999999999999999998877655531000      000000            0       000


Q ss_pred             ceeeeeeeccccceeEEEEeecC----------CEEEEeeCCCcEEEEecc
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDN----------RQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~v~iw~~~  312 (380)
                      +. ......|...|.+++|+|++          ++|++++.||.|++|++.
T Consensus       345 g~-~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          345 VD-EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             BC-TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             cc-cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            10 01112235679999999998          799999999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=250.68  Aligned_cols=290  Identities=17%  Similarity=0.226  Sum_probs=229.1

Q ss_pred             eEEeEEecCcccceEEEEeCCCC--CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKF--PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      .+....+.+|.+.|++++|+|+.  +++|++|+.||.|++|++.....   .....+.+|...|.+++|+|++++|++++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---TIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---EEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---eeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            34556788999999999999985  58999999999999999875221   12245678999999999999999999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEE--eCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF--SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .|+.|++||+.+++... +..|...|.+++|  +|++.++++++.|+.|++||+.......... .+ ..+.++.+.+. 
T Consensus       106 ~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~~-  181 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIYP-  181 (368)
T ss_dssp             TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEETT-
T ss_pred             CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecCC-
Confidence            99999999999887666 5679999999999  8999999999999999999987765554443 23 34666666542 


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCE----EEEEcCCCcEEEEECCCC---cEEEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSL----CASGGKDMNAMLWDLNDG---KHLHTLV  232 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~----l~~~~~d~~i~i~d~~~~---~~~~~~~  232 (380)
                         .+++++.++.+++|+++........  ..+...+.++.+.++...    +++++.|+.+++||+...   ..+..+.
T Consensus       182 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~  258 (368)
T 3mmy_A          182 ---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK  258 (368)
T ss_dssp             ---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred             ---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence               6788889999999999875443322  223345566666655544    999999999999999876   3333332


Q ss_pred             -ecC------------ceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEE
Q psy6984         233 -HND------------IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVS  299 (380)
Q Consensus       233 -~~~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  299 (380)
                       +..            .+.+++|+|++.+..      ....++.+.+|++..++....+..|...|.+++|+|++++|++
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~------s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          259 CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA------TVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             CSEEC----CCCEEECCEEEEEECTTTCCEE------EEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred             eeecccccccccccccceEEEEEecCCCEEE------EEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence             222            699999999886532      2345788999999999888888888899999999999999999


Q ss_pred             eeCCCcEEEEec
Q psy6984         300 SSRDKTIKLWNT  311 (380)
Q Consensus       300 ~~~dg~v~iw~~  311 (380)
                      ++.|+..+.|+.
T Consensus       333 ~s~d~~~~~~~~  344 (368)
T 3mmy_A          333 ASSYDWSKGHEF  344 (368)
T ss_dssp             EECCCSTTCGGG
T ss_pred             Eecccccccccc
Confidence            999987666553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-33  Score=248.87  Aligned_cols=303  Identities=13%  Similarity=0.134  Sum_probs=206.2

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCC
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~   86 (380)
                      ....+.+|.+.|++++|+|+ +.+|++|+.+ .+++|++......       ...+...+..+.+.++++++ ++++.|+
T Consensus        11 ~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~-~~~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~   81 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQD-QSCLILSTLK-SFEIYNVHPVAHI-------MSQEMRHLSKVRMLHRTNYVAFVTGVKE   81 (355)
T ss_dssp             --------CCCCCEEEECTT-SSEEEEECSS-EEEEEEETTEEEE-------EEEECSCCCEEEECTTSSEEEEECSSTT
T ss_pred             CccccccCCCceEEEEECCC-CCEEEEEcCC-EEEEEecCCccee-------eeeecCCeEEEEEcCCCCEEEEEECCcc
Confidence            34466899999999999998 6788888876 5789997532111       11122247788899888887 5678889


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc-ceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-CKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      .|++||+.+++.+..+. +..+|.+++|+++.  ++.+ .|+.+++||+... .....+..    ....+++++   . +
T Consensus        82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~---~-~  149 (355)
T 3vu4_A           82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN---G-L  149 (355)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET---T-E
T ss_pred             EEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc---c-E
Confidence            99999999999988876 66789999998764  3333 4789999998765 22222111    334456666   2 4


Q ss_pred             EEE--EeCCCeEEEEeCCCce----------------eeEeeeCCccceEEEEEcCCCCEEEEEcCCCc-EEEEECCCCc
Q psy6984         166 IVS--AGWDRMVKVWNLTNCK----------------LKINHSGHTGYLNTVTVSPDGSLCASGGKDMN-AMLWDLNDGK  226 (380)
Q Consensus       166 l~s--~~~d~~v~iwd~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~  226 (380)
                      ++.  |+.||.|++||+++..                ....+.+|...|.+++|+|+|++|++|+.|+. |++||+++++
T Consensus       150 la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          150 LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            444  6889999999998754                14567899999999999999999999999998 9999999887


Q ss_pred             EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984         227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI  306 (380)
Q Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  306 (380)
                      .+..+...                                             .|...|.+++|+|++++|++++.|++|
T Consensus       230 ~~~~~~~g---------------------------------------------~h~~~v~~~~~s~~~~~l~s~s~d~~v  264 (355)
T 3vu4_A          230 LVREFRRG---------------------------------------------LDRADVVDMKWSTDGSKLAVVSDKWTL  264 (355)
T ss_dssp             EEEEEECT---------------------------------------------TCCSCEEEEEECTTSCEEEEEETTCEE
T ss_pred             EEEEEEcC---------------------------------------------CCCCcEEEEEECCCCCEEEEEECCCEE
Confidence            65443200                                             033467889999999999999999999


Q ss_pred             EEEecccceeeeEeecccceEEEeeCccc----ccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeec
Q psy6984         307 KLWNTLAHCKFTIVDLETKKMVEELRPDV----VSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS  377 (380)
Q Consensus       307 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~  377 (380)
                      ++|++..+........... .........    ..............++|++||+.|++++.||.+++|++....
T Consensus       265 ~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          265 HVFEIFNDQDNKRHALKGW-INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEESSCCSCCCSEETTTT-EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEEccCCCCcccccccce-eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            9999865421111000000 000000000    000001111223468999999999999999999999987544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-33  Score=252.66  Aligned_cols=245  Identities=17%  Similarity=0.162  Sum_probs=193.5

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +.+|.+.|+++.|+|..+.+|++++.||+|++||+.... .  .......+|...|.+++|+|++++|++|+.|+.|++|
T Consensus       114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-I--QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-E--EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-e--EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            347999999999999546899999999999999987421 1  1112234556889999999999999999999999999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCC----cceEEEeeCCCcCcEEEEEEcc-CCCCCE
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLA----HCKFTIVEDGHSDWVSCVRFSP-NHQNPI  165 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~  165 (380)
                      |+ +++....+..|...|.+++|+|+++ ++++++.|+.|++||+..    .......  +|...|.+++|+| ++.  +
T Consensus       191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~--~  265 (383)
T 3ei3_B          191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDST--K  265 (383)
T ss_dssp             ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSC--E
T ss_pred             EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCC--E
Confidence            99 5778888899999999999999999 999999999999999875    3333333  5888999999999 654  7


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEeeeCCc-----------------cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINHSGHT-----------------GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      |++++.|+.|++||+++.+....+.+|.                 ..+..++++|++++  +++.|+.|++||+.+++.+
T Consensus       266 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          266 LLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV  343 (383)
T ss_dssp             EEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred             EEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence            8999999999999998766544443332                 23444667777776  7789999999999888765


Q ss_pred             EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEE
Q psy6984         229 HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKL  308 (380)
Q Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i  308 (380)
                      ..+...                                             .+...+..++|+|++++|++|+ ||.|++
T Consensus       344 ~~l~~~---------------------------------------------~~~~~~~~~~~s~~g~~l~s~s-d~~i~i  377 (383)
T 3ei3_B          344 HQLRDP---------------------------------------------NAAGIISLNKFSPTGDVLASGM-GFNILI  377 (383)
T ss_dssp             EEECBT---------------------------------------------TBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred             eeecCC---------------------------------------------CCCceEEEEEEecCccEEEEec-CCcEEE
Confidence            443210                                             0112345679999999999997 999999


Q ss_pred             Eecc
Q psy6984         309 WNTL  312 (380)
Q Consensus       309 w~~~  312 (380)
                      |++.
T Consensus       378 w~~~  381 (383)
T 3ei3_B          378 WNRE  381 (383)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.2e-34  Score=251.00  Aligned_cols=245  Identities=21%  Similarity=0.284  Sum_probs=202.1

Q ss_pred             cccceEEEEeCCCC---CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc-CCCEEEEEeCCCcEEE
Q psy6984          15 HNGWVTQIATNPKF---PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS-DGNYALSGSWDKTLRL   90 (380)
Q Consensus        15 h~~~v~~i~~~~~~---~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~v   90 (380)
                      |.+.|++++|+|+.   +.+|++|+.||.|++|++....     ....+.+|...|.+++|+| ++++|++++.||.|++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i  142 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ-----CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL  142 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC-----EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce-----EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            67889999999873   2489999999999999986432     2345678999999999999 9999999999999999


Q ss_pred             EECCCCceeeee---cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE--------------------------
Q psy6984          91 WDLAAGKTTRRF---EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF--------------------------  141 (380)
Q Consensus        91 wd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~--------------------------  141 (380)
                      ||+.+++....+   ..|...|.+++|+|++..+++++.|+.|++||+......                          
T Consensus       143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T 3k26_A          143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP  222 (366)
T ss_dssp             EETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred             EEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence            999999988887   689999999999999999999999999999997653221                          


Q ss_pred             -EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee--------------eEeeeCCccceEEEEEcCC--
Q psy6984         142 -TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL--------------KINHSGHTGYLNTVTVSPD--  204 (380)
Q Consensus       142 -~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--------------~~~~~~~~~~i~~~~~~~~--  204 (380)
                       ......|...|.+++|+.    .++++++.|+.|++||+.+...              ...+..|...|++++|+|+  
T Consensus       223 ~~~~~~~~~~~v~~~~~~~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  298 (366)
T 3k26_A          223 DFSTRDIHRNYVDCVRWLG----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW  298 (366)
T ss_dssp             SEEECSSCSSCCCEEEEET----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred             ccccccCCcceEEEEEEcC----CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC
Confidence             112234888899999982    3799999999999999876532              5566788889999999999  


Q ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc--c
Q psy6984         205 GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL--F  282 (380)
Q Consensus       205 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  282 (380)
                      +++|++++.|+.|++||+.+++....                                           ....+..+  .
T Consensus       299 ~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------------------------------~~~~~~~~~~~  335 (366)
T 3k26_A          299 QKMLALGNQVGKLYVWDLEVEDPHKA-------------------------------------------KCTTLTHHKCG  335 (366)
T ss_dssp             SSEEEEECTTSCEEEEECCSSSGGGC-------------------------------------------EEEEECCTTCC
T ss_pred             CcEEEEEecCCcEEEEECCCCCCccc-------------------------------------------cceEEcccccC
Confidence            99999999999999999977642100                                           00011122  4


Q ss_pred             cceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      ..|.+++|+|++++|++++.||.|++||+
T Consensus       336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          336 AAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            67889999999999999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=252.56  Aligned_cols=265  Identities=16%  Similarity=0.209  Sum_probs=205.0

Q ss_pred             CcccceEEEEeCCCC--CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEE------EccCCCEEEEEeCC
Q psy6984          14 GHNGWVTQIATNPKF--PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIV------LSSDGNYALSGSWD   85 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~--~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~s~~~d   85 (380)
                      +|.+.|++++|+|+.  +.+|++++.||.|++|++....    .....+.+|...|.++.      |+|++++|++++.|
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----ccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            799999999999974  5899999999999999987543    12345678999999995      46899999999999


Q ss_pred             CcEEEEECCCCc-eeeeecccCC----CeEEEE----EeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEE
Q psy6984          86 KTLRLWDLAAGK-TTRRFEDHTK----DVLSVA----FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR  156 (380)
Q Consensus        86 ~~i~vwd~~~~~-~~~~~~~h~~----~v~~~~----~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  156 (380)
                      +.|++||+.+++ ....+..|.+    .+.+++    |+|++..+++++.|+.|++||+........  ..|...+.+++
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~  216 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLE  216 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEE
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEE
Confidence            999999999886 6777765554    788888    678999999999999999999887655333  35778899999


Q ss_pred             EccCC-CCCEEEEEeCCCeEEEEeCCCceeeEee-----eCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEE
Q psy6984         157 FSPNH-QNPIIVSAGWDRMVKVWNLTNCKLKINH-----SGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       157 ~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  229 (380)
                      |+|.. ....|++++.|+.|++||+++.+....+     .+|...|.+++|+|+++ ++++++.|+.|++||+..+....
T Consensus       217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  296 (357)
T 3i2n_A          217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS  296 (357)
T ss_dssp             ESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred             cCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc
Confidence            99931 2347899999999999999876544333     38999999999999998 89999999999999987654322


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEE-EeeCCCcEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV-SSSRDKTIKL  308 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~i  308 (380)
                      ...           +++.....         .+        ..+....+..|...|.+++|+|++++|+ +++.||.|++
T Consensus       297 ~~~-----------~~g~~~~~---------~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i  348 (357)
T 3i2n_A          297 KKD-----------SEGIEMGV---------AG--------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV  348 (357)
T ss_dssp             -CC-----------TTSCCCCC---------CC--------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred             ccc-----------CCCCcccc---------cc--------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence            111           11110000         00        0112234456677899999999999998 8999999999


Q ss_pred             Eecc
Q psy6984         309 WNTL  312 (380)
Q Consensus       309 w~~~  312 (380)
                      |++.
T Consensus       349 w~~~  352 (357)
T 3i2n_A          349 LIVT  352 (357)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            9864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-33  Score=239.26  Aligned_cols=250  Identities=19%  Similarity=0.357  Sum_probs=209.1

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++.++...+.+|.+.|+++.|+|+ +.+|++++.||.+++|++......  .....+.+|...|.++.|  ++++|++++
T Consensus        47 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~--~~~~l~~~~  121 (313)
T 3odt_A           47 DDQWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTMINGVPLFATSGE--DPLYTLIGHQGNVCSLSF--QDGVVISGS  121 (313)
T ss_dssp             SSSEEEEEEEECSSCEEEEEEETT-TTEEEEEETTSCEEEEETTCCTTS--CC-CEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             CCCEEEEEeecCCccEEEEEECCC-CCEEEEecCCCeEEEEEeeecCCC--CcccchhhcccCEEEEEe--cCCEEEEEe
Confidence            344567788899999999999997 689999999999999998654321  234456889999999999  678999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (380)
                      .|+.|++||  .++....+..|...+.+++|+| ++..+++++.|+.+++||.  ..........|...+.+++|+|++.
T Consensus       122 ~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~  197 (313)
T 3odt_A          122 WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH  197 (313)
T ss_dssp             TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE
T ss_pred             CCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe
Confidence            999999999  6778888889999999999988 9999999999999999993  2333344444888999999999754


Q ss_pred             CCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                         +++++.|+.|++||+++.+....+.+|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+.          
T Consensus       198 ---~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~----------  263 (313)
T 3odt_A          198 ---FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT----------  263 (313)
T ss_dssp             ---EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE----------
T ss_pred             ---EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe----------
Confidence               8899999999999999998888888999999999999999 58899999999999998876543332          


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                                                           .+...+.+++|+|+++ +++++.||.|++|++..+
T Consensus       264 -------------------------------------~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          264 -------------------------------------LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             -------------------------------------CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             -------------------------------------ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence                                                 1223577889999998 667899999999987554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=278.95  Aligned_cols=259  Identities=20%  Similarity=0.309  Sum_probs=208.4

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC--CCEEEEEeCCC
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD--GNYALSGSWDK   86 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~   86 (380)
                      ...+.||.+.|++++|+|+ +++|++|+.||+|++|++....   ......+.+|...|++++|+|+  +++|++|+.||
T Consensus         2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~---~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGET---HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTE---EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCC---CccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            4568899999999999998 6899999999999999986321   1223457899999999999988  99999999999


Q ss_pred             cEEEEECCCCc--eeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCcc-eEEEeeCCCcCcEEEEEEccCC
Q psy6984          87 TLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWNTLAHC-KFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        87 ~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .|++||+.+++  ....+..|...|.+++|+|+  +..+++++.|+.|++||+.... .......+|...|.+++|+|..
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            99999999886  67777889999999999999  9999999999999999986652 2223335788899999999941


Q ss_pred             -----------CCCEEEEEeCCCeEEEEeCCCc----eeeEeeeCCccceEEEEEcCC---CCEEEEEcCCCcEEEEECC
Q psy6984         162 -----------QNPIIVSAGWDRMVKVWNLTNC----KLKINHSGHTGYLNTVTVSPD---GSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       162 -----------~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~  223 (380)
                                 ....+++++.||.|++||+++.    .....+.+|...|.+++|+|+   ++++++++.|+.|++||+.
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                       1346999999999999999875    444566789999999999999   8999999999999999987


Q ss_pred             CCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984         224 DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD  303 (380)
Q Consensus       224 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  303 (380)
                      +++....                                          ........+...+++++|+|++++|++|+.|
T Consensus       238 ~~~~~~~------------------------------------------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D  275 (753)
T 3jro_A          238 NEQGPWK------------------------------------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (753)
T ss_dssp             SSSSCCB------------------------------------------CCBSSSSCCSSCCCCEEECTTTCCEEEECSS
T ss_pred             CCCCcce------------------------------------------eEEeccCCCCCceEEEEEcCCCCEEEEEcCC
Confidence            6531000                                          0000112344568899999999999999999


Q ss_pred             CcEEEEeccc
Q psy6984         304 KTIKLWNTLA  313 (380)
Q Consensus       304 g~v~iw~~~~  313 (380)
                      |.|++|++..
T Consensus       276 g~I~vwd~~~  285 (753)
T 3jro_A          276 NKVTLWKENL  285 (753)
T ss_dssp             SCEECCBCCS
T ss_pred             CEEEEEecCC
Confidence            9999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-33  Score=255.30  Aligned_cols=262  Identities=21%  Similarity=0.339  Sum_probs=203.5

Q ss_pred             ccccCCCcceEEEEEccC-CCEEEEEeCCCcEEEEECCC----------CceeeeecccCCCeEEEEEeCCCC-EEEEEe
Q psy6984          58 KRLKGHSHFISDIVLSSD-GNYALSGSWDKTLRLWDLAA----------GKTTRRFEDHTKDVLSVAFSVDNR-QIVSSS  125 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~  125 (380)
                      .....|...|++++|+|+ +++|++++.||.|++||+.+          .+....+..|...|.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345679999999999997 78999999999999999976          567778889999999999999998 999999


Q ss_pred             CCCcEEEEeCCCcce----E--EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc---eeeEeeeCCccce
Q psy6984         126 RDKTIKLWNTLAHCK----F--TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC---KLKINHSGHTGYL  196 (380)
Q Consensus       126 ~d~~v~iwd~~~~~~----~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~i  196 (380)
                      .||.|++||+.....    .  .....+|...|.+++|+|... .+|++++.|+.|++||+++.   +.......|...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999865211    1  123347888999999999543 48899999999999999876   4555667899999


Q ss_pred             EEEEEcCCCC-EEEEEcCCCcEEEEECCCCc-EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984         197 NTVTVSPDGS-LCASGGKDMNAMLWDLNDGK-HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM  274 (380)
Q Consensus       197 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (380)
                      ++++|+|+++ ++++|+.|+.|++||++... .+.                                             
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~---------------------------------------------  315 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---------------------------------------------  315 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---------------------------------------------
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---------------------------------------------
Confidence            9999999987 68899999999999997632 111                                             


Q ss_pred             eeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEecccceeeeEe-ecccceEEEeeCcccccccCCCCCCceEEEEE
Q psy6984         275 ETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIV-DLETKKMVEELRPDVVSQSTKADPPMCLSLAW  352 (380)
Q Consensus       275 ~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (380)
                        .+..|...|.+++|+|+++ +|++++.||.|++|++......... +...       .+.........|...+.+++|
T Consensus       316 --~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          316 --SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED-------GPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             --EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH-------CCTTEEEECCCCSSCEEEEEE
T ss_pred             --EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc-------CCcceEEEcCCCCCCceEEEE
Confidence              1123445688999999985 6899999999999997542110000 0000       000011122345667899999


Q ss_pred             ecCCC-EEEEEeeCCeEEEEEee
Q psy6984         353 STDGQ-TLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       353 s~dg~-~l~~g~~dg~v~iw~~~  374 (380)
                      +|+++ +|++++.||.|+||++.
T Consensus       387 ~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          387 NPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCCCCEEEEEECCCCEEEeEcc
Confidence            99999 88999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.4e-32  Score=239.57  Aligned_cols=259  Identities=27%  Similarity=0.410  Sum_probs=206.8

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      .....+.+|.+.|+++.|+|+ +++|++++.|+.|++|+.....     .......+...+....+++++++|++++.|+
T Consensus        77 ~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  150 (340)
T 4aow_A           77 IPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGT-----TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK  150 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             eeeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccc-----eeeeecCCCCceeEEEEeecCccceeecCCC
Confidence            456788999999999999998 6899999999999999976432     1223456677788999999999999999999


Q ss_pred             cEEEEECCCCce-eeeecccCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          87 TLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDN--RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        87 ~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~--~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .+++||+..... ......|...+.+++|++++  ..+++++.|+.|++||......... ..+|...|.+++|+|+++ 
T Consensus       151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~-~~~h~~~v~~~~~s~~~~-  228 (340)
T 4aow_A          151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN-HIGHTGYLNTVTVSPDGS-  228 (340)
T ss_dssp             CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSS-
T ss_pred             eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE-ecCCCCcEEEEEECCCCC-
Confidence            999999876544 34456789999999998765  5788999999999999877655443 457999999999999764 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                       +|++++.|+.|++||+++.+....+.. ...+.++.++|++.++ +++.|+.|++||++.+..+..+....        
T Consensus       229 -~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~--------  297 (340)
T 4aow_A          229 -LCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEV--------  297 (340)
T ss_dssp             -EEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC---------
T ss_pred             -EEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccc--------
Confidence             799999999999999999887766664 4579999999987655 56679999999998876554432110        


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                                                    .......+...|.+++|+|++++|++|+.||+|++|++.++
T Consensus       298 ------------------------------~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          298 ------------------------------ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             ------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ------------------------------eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence                                          01112245567899999999999999999999999987554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.8e-33  Score=254.95  Aligned_cols=269  Identities=23%  Similarity=0.350  Sum_probs=209.1

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-----cccccccccCCCcceEEEEEccCCC-EEEEEe
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-----YGVPQKRLKGHSHFISDIVLSSDGN-YALSGS   83 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~   83 (380)
                      ..+.+|.+.|++++++|..+.+|++++.||.|++|++......     ...+...+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            4556899999999999975679999999999999998752111     0123445678999999999999988 999999


Q ss_pred             CCCcEEEEECCCCce-------eeeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcc--eEEEeeCCCcCcEE
Q psy6984          84 WDKTLRLWDLAAGKT-------TRRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHC--KFTIVEDGHSDWVS  153 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~v~  153 (380)
                      .||.|++||+.++..       ...+..|...|.+++|+| ++..+++++.|+.|++||+....  ........|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987432       455678999999999999 67899999999999999987642  22222247888999


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      +++|+|++. .+|++|+.|+.|++||+++ ......+..|...|.+++|+|+++ +|++++.|+.|++||+........ 
T Consensus       282 ~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~-  359 (430)
T 2xyi_A          282 CLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-  359 (430)
T ss_dssp             EEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC-
T ss_pred             EEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC-
Confidence            999999764 3788999999999999987 445666778999999999999985 699999999999999875321100 


Q ss_pred             EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEeeCCCcEEEEe
Q psy6984         232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSSRDKTIKLWN  310 (380)
Q Consensus       232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~  310 (380)
                                  +...            .+.        .......+.+|...|.+++|+|+++ +|++++.||.|++|+
T Consensus       360 ------------~~~~------------~~~--------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          360 ------------TEDA------------EDG--------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             ------------HHHH------------HHC--------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ------------cccc------------ccC--------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                        0000            000        0011122234556799999999999 899999999999998


Q ss_pred             cc
Q psy6984         311 TL  312 (380)
Q Consensus       311 ~~  312 (380)
                      +.
T Consensus       408 ~~  409 (430)
T 2xyi_A          408 MA  409 (430)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.1e-32  Score=248.26  Aligned_cols=280  Identities=14%  Similarity=0.153  Sum_probs=223.4

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee-----eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR-----RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      ..+.+++|+|++.++++++.|+.|++||+.+++...     .+..|...|.+++|+|++..+++++.|+.|++||..+..
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            345689999987888888889999999999988876     445788899999999999999999999999999987765


Q ss_pred             eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEc-------
Q psy6984         140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG-------  212 (380)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------  212 (380)
                      ...... .|...+.+++|+|++.. ++++++.|+.|++||+++.+.......+ ..+.+++++|+++++++++       
T Consensus       203 ~~~~~~-~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~  279 (433)
T 3bws_A          203 YKATVD-LTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQE  279 (433)
T ss_dssp             EEEEEE-CSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTC
T ss_pred             EEEEEc-CCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccc
Confidence            554443 67788999999997652 4456668999999999988776655543 4589999999999999887       


Q ss_pred             -CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEe
Q psy6984         213 -KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFS  291 (380)
Q Consensus       213 -~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  291 (380)
                       .|+.|++||+.+++.+..+.+...+..++|+|++....+     ....++.+.+|+...++....+ .+...+.+++|+
T Consensus       280 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-----~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s  353 (433)
T 3bws_A          280 SGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYV-----SDMCCSKIEVYDLKEKKVQKSI-PVFDKPNTIALS  353 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEE-----EETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEEC
T ss_pred             cCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEE-----EecCCCEEEEEECCCCcEEEEe-cCCCCCCeEEEc
Confidence             588999999999988888877778999999998764322     1235678999999888766544 456778999999


Q ss_pred             ecCCEEEEeeC---------------CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCC
Q psy6984         292 VDNRQIVSSSR---------------DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG  356 (380)
Q Consensus       292 ~~~~~l~s~~~---------------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  356 (380)
                      |++++|++++.               ||.|++||..++..+..+..                     ...+..++|+|||
T Consensus       354 ~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dg  412 (433)
T 3bws_A          354 PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------------------GNQPTGLDVSPDN  412 (433)
T ss_dssp             TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------------------SSSEEEEEECTTS
T ss_pred             CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------------------CCCCceEEEcCCC
Confidence            99999888876               57999998755433222110                     1236789999999


Q ss_pred             CEEEEEee-CCeEEEEEee
Q psy6984         357 QTLFAGYS-DNTIRVWQVS  374 (380)
Q Consensus       357 ~~l~~g~~-dg~v~iw~~~  374 (380)
                      ++|++++. |+.|++|++.
T Consensus       413 ~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          413 RYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CEEEEEETTTTEEEEEEET
T ss_pred             CEEEEEECCCCeEEEEEec
Confidence            99988775 9999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-34  Score=275.30  Aligned_cols=259  Identities=22%  Similarity=0.304  Sum_probs=206.4

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeeecccCCCeEEEEEeCC--CCEEEEEeCCCcEEEEe
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA--AGKTTRRFEDHTKDVLSVAFSVD--NRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~~~s~~~d~~v~iwd  134 (380)
                      .+.+|...|++++|+|++++|++|+.||.|++||+.  +++....+.+|..+|.+++|+|+  ++++++++.||.|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            467999999999999999999999999999999997  45667788899999999999988  99999999999999999


Q ss_pred             CCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc--eeeEeeeCCccceEEEEEcC--------
Q psy6984         135 TLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC--KLKINHSGHTGYLNTVTVSP--------  203 (380)
Q Consensus       135 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~i~~~~~~~--------  203 (380)
                      +.+... ......+|...|.+++|+|+.....+++++.|+.|++||++..  .......+|...|.++.|+|        
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~  163 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence            876542 3344467899999999999732458999999999999999876  33445678899999999999        


Q ss_pred             -----CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee
Q psy6984         204 -----DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF  278 (380)
Q Consensus       204 -----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (380)
                           ++.++++|+.||.|++||++++.....                                           ....+
T Consensus       164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~-------------------------------------------~~~~~  200 (753)
T 3jro_A          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYV-------------------------------------------LESTL  200 (753)
T ss_dssp             ---CGGGCCEEEEETTSCEEEEEEETTTTEEE-------------------------------------------EEEEE
T ss_pred             cccCCCCCEEEEEECCCeEEEEeccCCcccce-------------------------------------------eeeee
Confidence                 589999999999999999876531110                                           01122


Q ss_pred             eccccceeEEEEeec---CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecC
Q psy6984         279 FSLFRDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD  355 (380)
Q Consensus       279 ~~~~~~v~~~~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  355 (380)
                      ..|...|.+++|+|+   +++|++|+.||.|++||...+....         ..      .......+...+.+++|+|+
T Consensus       201 ~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~---------~~------~~~~~~~~~~~v~~l~~spd  265 (753)
T 3jro_A          201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW---------KK------TLLKEEKFPDVLWRASWSLS  265 (753)
T ss_dssp             CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC---------BC------CBSSSSCCSSCCCCEEECTT
T ss_pred             cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc---------ee------EEeccCCCCCceEEEEEcCC
Confidence            345567899999999   8999999999999999875432100         00      01112345667889999999


Q ss_pred             CCEEEEEeeCCeEEEEEeee
Q psy6984         356 GQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       356 g~~l~~g~~dg~v~iw~~~~  375 (380)
                      |++|++|+.||.|++|++..
T Consensus       266 g~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          266 GNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             TCCEEEECSSSCEECCBCCS
T ss_pred             CCEEEEEcCCCEEEEEecCC
Confidence            99999999999999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=256.04  Aligned_cols=269  Identities=16%  Similarity=0.264  Sum_probs=195.0

Q ss_pred             CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc-----------eeeeecccC------------CCeEEEEEeCCC
Q psy6984          62 GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-----------TTRRFEDHT------------KDVLSVAFSVDN  118 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~h~------------~~v~~~~~~~~~  118 (380)
                      .|.+.|++++|+|+|++|++|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467889999999999999999999999999998876           477788898            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEeCCCcceE---------------------------------------EEeeCCCcCcEEEEEE
Q psy6984         119 --RQIVSSSRDKTIKLWNTLAHCKF---------------------------------------TIVEDGHSDWVSCVRF  157 (380)
Q Consensus       119 --~~~~s~~~d~~v~iwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~  157 (380)
                        ..+++++.|+.|++||+......                                       .....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999997542221                                       1223579999999999


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeeE--------eeeCCccceEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcE-
Q psy6984         158 SPNHQNPIIVSAGWDRMVKVWNLTNCKLKI--------NHSGHTGYLNTVTVSPDG-SLCASGGKDMNAMLWDLNDGKH-  227 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-  227 (380)
                      +|++.  +|+++ .|+.|++||++......        ...+|...|.+++|+|++ ++|++|+.|+.|++||+++++. 
T Consensus       186 ~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          186 NSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             CTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             cCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            99754  78887 79999999998433222        245788999999999998 9999999999999999987753 


Q ss_pred             ---EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         228 ---LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       228 ---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                         +..+.....                                   ......+..+...|.+++|+|++++|++++. +
T Consensus       263 ~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          263 DRHSKLFEEPED-----------------------------------PSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             CTTCEEECCC----------------------------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             cceeeEeccCCC-----------------------------------ccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence               222111000                                   0000112234457899999999999999998 9


Q ss_pred             cEEEEeccc-ceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         305 TIKLWNTLA-HCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       305 ~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      .|++||+.. +..+..+.....     ................+..++|+|+|++|++|+.||.|++||+.
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEY-----LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGG-----GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             eEEEEeCCCCccccceeecccc-----ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence            999999864 322221111100     00000000000000012358999999999999999999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-33  Score=253.49  Aligned_cols=316  Identities=14%  Similarity=0.139  Sum_probs=223.4

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCC---CCccc--------------------------------------
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDD---TNYGV--------------------------------------   55 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~---~~~~~--------------------------------------   55 (380)
                      .+++++.++|+ +++|+++ .++.|++|++....   .....                                      
T Consensus         5 ~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            47889999998 5666655 57899999976443   10000                                      


Q ss_pred             -----------ccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECC--CCceeeeec--ccCCCeEEEEEeCCCC
Q psy6984          56 -----------PQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLA--AGKTTRRFE--DHTKDVLSVAFSVDNR  119 (380)
Q Consensus        56 -----------~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~~  119 (380)
                                 +.....+|...|++++|+|++++| ++++.|+.|++||+.  +++.+..+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                       001123566689999999999996 899999999999998  888887776  5678899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcceEE---EeeCCCcCcEEEEEEccC-CCCCEEEEEeCCCeEEEEeCCCceeeEe-eeCCcc
Q psy6984         120 QIVSSSRDKTIKLWNTLAHCKFT---IVEDGHSDWVSCVRFSPN-HQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSGHTG  194 (380)
Q Consensus       120 ~~~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~  194 (380)
                      +|++++.++.+++|++.......   ....+|...|.+++|+|+ ....+|++++.|+.|++||+++.+.... ..+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999976543221   122367889999999997 1234799999999999999998776655 558999


Q ss_pred             ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984         195 YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM  274 (380)
Q Consensus       195 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (380)
                      .|.+++|+ ++++|++++.|+.|++||+.+++.+..+.....+..+++.......                .+..     
T Consensus       243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-----  300 (450)
T 2vdu_B          243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP----------------RFQN-----  300 (450)
T ss_dssp             CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------------------------
T ss_pred             ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc----------------cccc-----
Confidence            99999999 9999999999999999999999887776533222221111100000                0000     


Q ss_pred             eeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEec--ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984         275 ETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNT--LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA  351 (380)
Q Consensus       275 ~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                       .........+.+++|+|++++|++++ .|+.|++|++  ..+..+.        .+..+.         .+ ..+.+++
T Consensus       301 -~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~--------~~~~~~---------~~-~~v~~~~  361 (450)
T 2vdu_B          301 -ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLA--------LKQIIT---------FP-YNVISLS  361 (450)
T ss_dssp             -----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEE--------EEEEEE---------CS-SCEEEEE
T ss_pred             -cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCcee--------eccEec---------cC-CceEEEE
Confidence             00001234578899999999999998 8999999987  3321111        111111         11 4578999


Q ss_pred             EecCCCEEEEEee------CCeEEEEEeee
Q psy6984         352 WSTDGQTLFAGYS------DNTIRVWQVSV  375 (380)
Q Consensus       352 ~s~dg~~l~~g~~------dg~v~iw~~~~  375 (380)
                      |+|++.++++++.      ++.|++|.+..
T Consensus       362 ~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          362 AHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            9996544444443      55689998753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.2e-33  Score=252.84  Aligned_cols=252  Identities=17%  Similarity=0.121  Sum_probs=170.0

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCcee-----eeecccCCCeEEEEEeC--------CCCEEEEEeCCCcEEEEeC
Q psy6984          69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTT-----RRFEDHTKDVLSVAFSV--------DNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~~--------~~~~~~s~~~d~~v~iwd~  135 (380)
                      ...+++++.+|++++.|+.|+|||+.+++..     ..+.+|.+.|.+++|+|        |+++||+++.|++|++||+
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            3444566778999999999999999887543     34678999999999998        8899999999999999998


Q ss_pred             CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-------------------------eee
Q psy6984         136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-------------------------NHS  190 (380)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-------------------------~~~  190 (380)
                      .......... .|...+.+++|+|++. .+|++++.|++|++||+++.+...                         ...
T Consensus       174 ~~~~~~~~~~-~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          174 TDEGPILAGY-PLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             ETTEEEEEEE-ECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             CCCceeeeec-CCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence            7655444333 5677899999999754 378999999999999998654221                         123


Q ss_pred             CCccceEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEE
Q psy6984         191 GHTGYLNTVTVS-PDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYP  268 (380)
Q Consensus       191 ~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (380)
                      +|...+.++.|+ |+++.+++++.|+.+++||+..++....+. +...+..+.+.|+....                   
T Consensus       252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------  312 (393)
T 4gq1_A          252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI-------------------  312 (393)
T ss_dssp             CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE-------------------
T ss_pred             cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc-------------------
Confidence            567778888886 799999999999999999998876554442 33334444444432110                   


Q ss_pred             cCCceeeeeeeccccceeEEEEee--cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCc
Q psy6984         269 INHGKMETPFFSLFRDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM  346 (380)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (380)
                                 ..........|+|  ++.++++|+.||+|++||...+......                    ..+...
T Consensus       313 -----------~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~--------------------~~~~~~  361 (393)
T 4gq1_A          313 -----------SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP--------------------IQLGMP  361 (393)
T ss_dssp             -----------CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE--------------------EECSSC
T ss_pred             -----------cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe--------------------cCCCCc
Confidence                       0001112233443  4456778889999999997554322111                    113446


Q ss_pred             eEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         347 CLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       347 ~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      |.+++|||||++||+++.+| +.+|++
T Consensus       362 V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          362 IVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            88999999999999998666 666655

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.9e-34  Score=257.07  Aligned_cols=254  Identities=17%  Similarity=0.172  Sum_probs=188.6

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      ....+.||.+.|++|.|+|..+++|++|+.||+|++||+......   .......+...+.++.|+|++++|++|+.||.
T Consensus       156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~  232 (435)
T 4e54_B          156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR---VFASSDTINIWFCSLDVSASSRMVVTGDNVGN  232 (435)
T ss_dssp             EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE---EEECCSSCSCCCCCEEEETTTTEEEEECSSSB
T ss_pred             eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee---EEeccCCCCccEEEEEECCCCCEEEEEeCCCc
Confidence            445677999999999999976789999999999999998643211   11112234456788999999999999999999


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceE--EEeeCCCcCcEEEEEEccCCCCC
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKF--TIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      |++||+. ++.+..+..|...|.+++|+|++. ++++++.|+.|++||+......  .....+|...|.+++|+|++.  
T Consensus       233 i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~--  309 (435)
T 4e54_B          233 VILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA--  309 (435)
T ss_dssp             EEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS--
T ss_pred             EeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC--
Confidence            9999986 456677889999999999999886 7889999999999998653321  122346888999999999764  


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEeeeCCcc------ceEEEEEcCCCCEEEEEcC------------CCcEEEEECCCCc
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTG------YLNTVTVSPDGSLCASGGK------------DMNAMLWDLNDGK  226 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~  226 (380)
                      +|++++.|+.|++||+.+.........|..      .+....++|++.++++++.            ++.|++||..+++
T Consensus       310 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~  389 (435)
T 4e54_B          310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK  389 (435)
T ss_dssp             EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred             eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence            799999999999999998776555544432      2334567777777666542            2456666665554


Q ss_pred             EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEE-EEeecCCEEEEeeCCCc
Q psy6984         227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV-AFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~  305 (380)
                      .+..+.                                              ..+...|.++ +|+|+|++|++|+ |++
T Consensus       390 ~~~~l~----------------------------------------------~~~~~~v~s~~~fspdg~~lasg~-d~~  422 (435)
T 4e54_B          390 MMCQLY----------------------------------------------DPESSGISSLNEFNPMGDTLASAM-GYH  422 (435)
T ss_dssp             EEEEEC----------------------------------------------CSSCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred             EEEEEe----------------------------------------------CCCCCcEEEEEEECCCCCEEEEEc-CCc
Confidence            432221                                              1233445565 6999999999876 889


Q ss_pred             EEEEecccc
Q psy6984         306 IKLWNTLAH  314 (380)
Q Consensus       306 v~iw~~~~~  314 (380)
                      |++|+..++
T Consensus       423 i~iW~~~~g  431 (435)
T 4e54_B          423 ILIWSQQEA  431 (435)
T ss_dssp             EEECCCC--
T ss_pred             EEEEECCcC
Confidence            999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-33  Score=244.73  Aligned_cols=263  Identities=11%  Similarity=0.047  Sum_probs=196.0

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC---------CCcee
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA---------AGKTT   99 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~   99 (380)
                      +.++++|+.||+|++||+.......     .+.  ...|.++.++|+   +++++.|+.|++|+..         +++.+
T Consensus        48 ~~~l~sg~~Dg~v~iwd~~~~~~~~-----~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           48 KWVCMCRCEDGALHFTQLKDSKTIT-----TIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             EEEEEEEEETTEEEEEEESSSSCEE-----EEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEEE-----EEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            5689999999999999987543221     111  345777788887   9999999999999765         44434


Q ss_pred             eeec-ccCCCeEEEEEeC--CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984         100 RRFE-DHTKDVLSVAFSV--DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK  176 (380)
Q Consensus       100 ~~~~-~h~~~v~~~~~~~--~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~  176 (380)
                      ..+. .|..+|.+++|+|  +++++++++.|+.|++||+............+...+.+++|+|++.  +|++|+.|+.|+
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~--~lasg~~dg~i~  195 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL--LLALYSPDGILD  195 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC--EEEEECTTSCEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC--EEEEEcCCCEEE
Confidence            4443 6778899999999  9999999999999999999877665555455666799999999764  799999999999


Q ss_pred             EEeCCCceee-EeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeee
Q psy6984         177 VWNLTNCKLK-INHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD  254 (380)
Q Consensus       177 iwd~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  254 (380)
                      +||+++.+.. ..+.. |...|.+++|+|++.+|++++.+ .|++||+++++.+..+..              +      
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~--------------~------  254 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPT--------------Y------  254 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCC--------------C------
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecc--------------c------
Confidence            9999988766 56666 99999999999999999999954 999999987643211100              0      


Q ss_pred             eeeeccccceEEEEcCCceeeeeeeccccce--eEEEEeecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEee
Q psy6984         255 ISRTLQKSNLILYPINHGKMETPFFSLFRDV--LSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEEL  331 (380)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  331 (380)
                                              ..+...+  .+++|+|++++|++++. |+.|++|+.....+...           .
T Consensus       255 ------------------------~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~-----------~  299 (343)
T 3lrv_A          255 ------------------------TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT-----------K  299 (343)
T ss_dssp             ------------------------BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE-----------E
T ss_pred             ------------------------ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE-----------e
Confidence                                    0000011  46899999999999998 99999998643221110           0


Q ss_pred             CcccccccCCCCCCceEEEEEec---CCCEEEEEeeCCeEEEEE
Q psy6984         332 RPDVVSQSTKADPPMCLSLAWST---DGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~s~---dg~~l~~g~~dg~v~iw~  372 (380)
                                   ..+..++|++   +++.|++++.||.+.++-
T Consensus       300 -------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          300 -------------DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             -------------EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             -------------cCceeEecCccccccceeEEEecCCceEEEE
Confidence                         1234566777   788888888888888763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.8e-32  Score=240.59  Aligned_cols=257  Identities=15%  Similarity=0.101  Sum_probs=197.1

Q ss_pred             ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc---eeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeC
Q psy6984          60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK---TTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNT  135 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~  135 (380)
                      ..+|...|++++|+|++++|++++.|+.|++||+.+++   ....+..|...|.+++|+|+++ ++++++.|+.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            35799999999999999999999999999999998876   3445568999999999999999 9999999999999998


Q ss_pred             -CCcceEEEeeCC--CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCC---------ceeeEeeeCCccceEEEEEcC
Q psy6984         136 -LAHCKFTIVEDG--HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN---------CKLKINHSGHTGYLNTVTVSP  203 (380)
Q Consensus       136 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~---------~~~~~~~~~~~~~i~~~~~~~  203 (380)
                       ......  ...+  |...|.+++|+| +  ..|++++.|+.|++||+++         .+....+. |...+.+++|+|
T Consensus        87 ~~~~~~~--~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           87 IGSPSFQ--ALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSEE--ECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             ccCCceE--eccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence             666542  2345  889999999998 3  4799999999999999986         55444444 788999999999


Q ss_pred             CCCEEEEEcCCCcEEEEECCC-CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984         204 DGSLCASGGKDMNAMLWDLND-GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF  282 (380)
Q Consensus       204 ~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (380)
                      ++  +++++.|+.|++||++. +.....                                             .....+.
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------------~~~~~~~  193 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGT---------------------------------------------IEESGLK  193 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCE---------------------------------------------EEECSCS
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccce---------------------------------------------eeecCCC
Confidence            87  89999999999999976 431100                                             0001223


Q ss_pred             cceeEEEEee-cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE
Q psy6984         283 RDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA  361 (380)
Q Consensus       283 ~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  361 (380)
                      ..+.+++|+| ++++|++++.||.|++|+......     .........+...........+...+.+++|+|++++|++
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  268 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence            4578899999 999999999999999998754300     0000001111100000011233457889999999999999


Q ss_pred             EeeCCeEEEEEee
Q psy6984         362 GYSDNTIRVWQVS  374 (380)
Q Consensus       362 g~~dg~v~iw~~~  374 (380)
                      |+.||.|++||+.
T Consensus       269 ~~~dg~i~vwd~~  281 (342)
T 1yfq_A          269 AGSDGIISCWNLQ  281 (342)
T ss_dssp             EETTSCEEEEETT
T ss_pred             ecCCceEEEEcCc
Confidence            9999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.4e-31  Score=240.58  Aligned_cols=256  Identities=19%  Similarity=0.302  Sum_probs=206.1

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--ccccccccCCCcceEEEEEccCC-CEEEEEeCC
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQKRLKGHSHFISDIVLSSDG-NYALSGSWD   85 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d   85 (380)
                      ...+.+|.+.|++++|+|..+++|++|+.||+|++|++.......  ..+...+.+|...|.+++|+|++ ++|++++.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            345789999999999999447899999999999999987643211  12345678999999999999998 699999999


Q ss_pred             CcEEEEECCCCceeeee--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc-EEEEEEccCCC
Q psy6984          86 KTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW-VSCVRFSPNHQ  162 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~  162 (380)
                      +.|++||+.+++....+  ..|...|.+++|+|++..+++++.|+.|++||+............|... +.++.|+|++.
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            99999999999999998  7899999999999999999999999999999988776665554566654 88999999753


Q ss_pred             CCEEEEE---eCCCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcE-E---EEEE
Q psy6984         163 NPIIVSA---GWDRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLNDGKH-L---HTLV  232 (380)
Q Consensus       163 ~~~l~s~---~~d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~-~---~~~~  232 (380)
                        +|++|   +.|+.|++||+++.+.  ......|...+.+++|+|++++++ +|+.|+.|++||+.+++. +   ....
T Consensus       234 --~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~  311 (402)
T 2aq5_A          234 --ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS  311 (402)
T ss_dssp             --EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred             --EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence              67777   6899999999987653  222235677899999999999986 566899999999998873 3   3333


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM  274 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (380)
                      +...+.+++|+|++.+...        ....+.+|++..+..
T Consensus       312 ~~~~v~~~~~sp~~~~~~s--------~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          312 SKESQRGMGYMPKRGLEVN--------KCEIARFYKLHERKC  345 (402)
T ss_dssp             CSSCCSEEEECCGGGSCGG--------GTEEEEEEEEETTEE
T ss_pred             cCCcccceEEeccccccee--------cceeEEEEEcCCCcE
Confidence            5688999999998765332        233567777765543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.4e-30  Score=236.20  Aligned_cols=298  Identities=11%  Similarity=0.090  Sum_probs=233.5

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ++....+..+. .+.+++++| .+.++++++.|++|++||+.........+...+.+|...|.+++|+++++++++++.|
T Consensus       113 ~~~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          113 HRFISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             EEEEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             ceEEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence            35555665554 455899999 4678888889999999998754332222222456899999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      +.|++||+.+++....+..|...+.+++|+|+++.+++ ++.|+.|++||+.+........  ....+.+++++|+++  
T Consensus       191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~--  266 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGK--  266 (433)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSS--
T ss_pred             CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCC--
Confidence            99999999999999988889999999999999998854 5589999999987765544432  234589999999765  


Q ss_pred             EEEEEe--------CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEEecC
Q psy6984         165 IIVSAG--------WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGKHLHTLVHND  235 (380)
Q Consensus       165 ~l~s~~--------~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~  235 (380)
                      .+++++        .|+.|++||+.+.+..... .|...+..++|+|+++. +++++.|+.+++||+.+++.+..+.+..
T Consensus       267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~  345 (433)
T 3bws_A          267 ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD  345 (433)
T ss_dssp             EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC
Confidence            566665        4889999999987765443 45567889999999975 5667999999999999999888888888


Q ss_pred             ceEEEEeecCcccceeeeeee---------eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC-CCc
Q psy6984         236 IITALCFSPNRSFQKIKLDIS---------RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR-DKT  305 (380)
Q Consensus       236 ~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~  305 (380)
                      .+..++|+|++.+........         ....++.+.+|+..+++....+.. ...+.+++|+|++++|++++. |+.
T Consensus       346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~  424 (433)
T 3bws_A          346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQ  424 (433)
T ss_dssp             SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTE
T ss_pred             CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCe
Confidence            899999999987543332110         011145799999988877665544 557899999999999988775 999


Q ss_pred             EEEEec
Q psy6984         306 IKLWNT  311 (380)
Q Consensus       306 v~iw~~  311 (380)
                      |++|++
T Consensus       425 i~v~~~  430 (433)
T 3bws_A          425 IRVYRR  430 (433)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.3e-29  Score=226.77  Aligned_cols=277  Identities=14%  Similarity=0.149  Sum_probs=217.7

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      .++++++.|+.|++||+....     ....+..| ..+.+++|+|++++| ++++.|+.|++||+.+++....+..+. .
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~-----~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNK-----VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-S   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTE-----EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-S
T ss_pred             EEEEEcCCCCEEEEEECCCCe-----EEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-C
Confidence            468889999999999986432     12234444 358999999999987 677799999999999999888877655 8


Q ss_pred             eEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE
Q psy6984         109 VLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI  187 (380)
Q Consensus       109 v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  187 (380)
                      +.+++|+|++++++. ++.++.|++||+.+........  +...+.+++|+|+++. ++++++.++.|++||+.+.+...
T Consensus        76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCE-EEEEeCCCCEEEEEECCCCcEEE
Confidence            999999999998764 5567999999988766554443  2345899999998652 44788889999999999888776


Q ss_pred             eeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEE
Q psy6984         188 NHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLIL  266 (380)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (380)
                      ....+ ..+..++|+|+++++ ++++.++.|++||+.+++.+..+.+...+..++|+|++.+......   ...++.+.+
T Consensus       153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~v~~  228 (391)
T 1l0q_A          153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV---DKYFNTVSM  228 (391)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE---CSSCCEEEE
T ss_pred             EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec---CcCCCcEEE
Confidence            66655 456899999999987 6778899999999999998888888888999999999865433221   114578899


Q ss_pred             EEcCCceeeeeeeccccceeEEEEeecCCEE-EEeeCCCcEEEEecccceeeeEee
Q psy6984         267 YPINHGKMETPFFSLFRDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                      |+...++....+.. ...+.+++|+|++++| ++++.|+.|++||+..+.....+.
T Consensus       229 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          229 IDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             EETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EECCCCeEEEEEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            99988877655544 3457899999999987 677889999999987766554443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=9.4e-33  Score=247.11  Aligned_cols=233  Identities=15%  Similarity=0.129  Sum_probs=165.3

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc--------CCCEEEEEeCCCcEEEEECCCCceee
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS--------DGNYALSGSWDKTLRLWDLAAGKTTR  100 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~s~~~d~~i~vwd~~~~~~~~  100 (380)
                      ..+|++++.|++|++|++.............+.+|.+.|++++|+|        |+++||+|+.|++|+|||+.++....
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence            5689999999999999987543222223456789999999999997        88999999999999999999888888


Q ss_pred             eecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEE------------------------eeCCCcCcEEEE
Q psy6984         101 RFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTI------------------------VEDGHSDWVSCV  155 (380)
Q Consensus       101 ~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~------------------------~~~~~~~~v~~~  155 (380)
                      .+..|..+|.+++|+|++. ++++++.|++|++||+........                        ...+|...+.++
T Consensus       181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v  260 (393)
T 4gq1_A          181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV  260 (393)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred             eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence            8888999999999999875 799999999999999765432111                        113567778888


Q ss_pred             EEc-cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEE------------------cC--CCCEEEEEcCC
Q psy6984         156 RFS-PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTV------------------SP--DGSLCASGGKD  214 (380)
Q Consensus       156 ~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~------------------~~--~~~~l~~~~~d  214 (380)
                      .|. |++  ..+++++.|+++++||+...+....+..|...+..+.+                  +|  ++.++++|+.|
T Consensus       261 ~~~~~dg--~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D  338 (393)
T 4gq1_A          261 RWIGSDG--SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH  338 (393)
T ss_dssp             EEETTTT--CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred             eeecCCC--CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence            887 443  47899999999999999876544444444333333322                  22  33466778888


Q ss_pred             CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         215 MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       215 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      +.|++||+.+++....                                               +..+...|.+++|+|||
T Consensus       339 g~V~lwd~~~~~~~~~-----------------------------------------------~~~~~~~V~svafspdG  371 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSI-----------------------------------------------PIQLGMPIVDFCWHQDG  371 (393)
T ss_dssp             TEEEEEETTCTTCCEE-----------------------------------------------EEECSSCEEEEEECTTS
T ss_pred             CEEEEEECCCCcEEEE-----------------------------------------------ecCCCCcEEEEEEcCCC
Confidence            9999998876643211                                               22344578899999999


Q ss_pred             CEEEEeeCCCcEEEEec
Q psy6984         295 RQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       295 ~~l~s~~~dg~v~iw~~  311 (380)
                      ++||+++.|| +.+|++
T Consensus       372 ~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          372 SHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SEEEEEESSE-EEEEEE
T ss_pred             CEEEEEeCCC-eEEEEE
Confidence            9999998766 556653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.4e-31  Score=240.46  Aligned_cols=252  Identities=27%  Similarity=0.460  Sum_probs=203.4

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      .++.++...+.+|.+.|+++.++   +++|++|+.||+|++||+....     ....+.+|...|.++.|+  ++++++|
T Consensus       160 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~--~~~l~s~  229 (435)
T 1p22_A          160 KNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGE-----MLNTLIHHCEAVLHLRFN--NGMMVTC  229 (435)
T ss_dssp             SSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCC-----EEEEECCCCSCEEEEECC--TTEEEEE
T ss_pred             CCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCc-----EEEEEcCCCCcEEEEEEc--CCEEEEe
Confidence            34566788899999999999993   5699999999999999987543     234567899999999996  4699999


Q ss_pred             eCCCcEEEEECCCCcee---eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984          83 SWDKTLRLWDLAAGKTT---RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        83 ~~d~~i~vwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  159 (380)
                      +.|+.|++||+.+++..   ..+.+|...|.+++|  +++.+++++.|+.|++||+.+....... .+|...+.++.+++
T Consensus       230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~  306 (435)
T 1p22_A          230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQYRD  306 (435)
T ss_dssp             ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEEET
T ss_pred             eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE-cCCCCcEEEEEeCC
Confidence            99999999999887655   667889999999999  6889999999999999998876655444 47888999999853


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA  239 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  239 (380)
                          .++++|+.|+.|++||+++++....+.+|...|.++++  +++++++|+.||.|++||+.+++.            
T Consensus       307 ----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~------------  368 (435)
T 1p22_A          307 ----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALD------------  368 (435)
T ss_dssp             ----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTS------------
T ss_pred             ----CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCC------------
Confidence                37999999999999999999888888999999999988  788999999999999999854320            


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                          +...             ..         ......+..|...|.+++|  ++++|++|+.||+|++||+..
T Consensus       369 ----~~~~-------------~~---------~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          369 ----PRAP-------------AG---------TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             ----TTSC-------------TT---------TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             ----cccc-------------cc---------chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence                0000             00         0011223345667888888  789999999999999998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=241.95  Aligned_cols=247  Identities=9%  Similarity=0.098  Sum_probs=193.6

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc-----ceEEEEEccCCCEEEEEeCCCcE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH-----FISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      +|.+.|.+++|+|+ +.+||+++.||+|++|+...       ....+. |..     .|.+++|+|||++|++|+.||.|
T Consensus        83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~-------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV  153 (588)
T 2j04_A           83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK-------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL  153 (588)
T ss_dssp             SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE-------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred             CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc-------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence            66889999999998 78999999999999998532       122234 444     49999999999999999999999


Q ss_pred             EEEECCCCce-------eeee----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE---EEeeCCCcCcEEE
Q psy6984          89 RLWDLAAGKT-------TRRF----EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF---TIVEDGHSDWVSC  154 (380)
Q Consensus        89 ~vwd~~~~~~-------~~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~  154 (380)
                      +|||+.+++.       +..+    .+|...|.+++|+|||  +++++.|+.+++||+......   ..+..+|...|.+
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            9999998753       4555    6678899999999999  889999999999998765521   2333478888999


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEE--cCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTV--SPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      ++|+ +   ..+++++ +++|++||+.+.+......+|...+..++|  +|++..+++++.||. ++|...         
T Consensus       232 vaFs-g---~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------  296 (588)
T 2j04_A          232 LKIV-D---YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------  296 (588)
T ss_dssp             EEEE-T---TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------
T ss_pred             EEEE-C---CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------
Confidence            9998 2   3688776 699999999988875555589999999999  999999999999999 999876         


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                            .+.++|++...+..        +..+.+|+...+.. . .+.....|++++|||||+.+|+++.
T Consensus       297 ------~~~~spd~~l~a~~--------d~~v~lW~~~g~~l-~-~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 ------ELHVTADNIIAPYL--------EKKFKKWSTIWNEF-N-NYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             ------SEEEECCCSSHHHH--------HHHHHHTTTTTTSS-S-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             ------cEEECCCceEEEEc--------CCEEEEEECCCCce-e-eeccceEEEEEEECCCCCEEEEEEe
Confidence                  14477776543321        34455555433321 1 2222445889999999999999874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.5e-30  Score=219.18  Aligned_cols=302  Identities=15%  Similarity=0.124  Sum_probs=174.8

Q ss_pred             cceeeEEeEEecCccc----ceEEEEeCCCCC--CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC
Q psy6984           2 STETLQLRGTLNGHNG----WVTQIATNPKFP--DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD   75 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~----~v~~i~~~~~~~--~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~   75 (380)
                      ++.+++++.+|+.-.+    .+.++-|-....  ..+++++. .+|++|+..... + ........+|+.+|..+.+.||
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~-~-~~~~~~~~~~~~~v~~~~~~~~   97 (356)
T 2w18_A           21 NPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW-Q-WEKLYTWHFAEVPVLQIVPVPD   97 (356)
T ss_dssp             ---CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSS-B-EEEEEEEECCSSCEEEECCCTT
T ss_pred             CcceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc-c-ceeeEEEeccCceeEEEEEcCc
Confidence            4567889999886654    355665655421  25777775 699999987541 1 1223445566666666666554


Q ss_pred             CCEEE-EEeCCC---cEEEEECCCC----ceeeeecccCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCcceEEEee
Q psy6984          76 GNYAL-SGSWDK---TLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        76 ~~~l~-s~~~d~---~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~v~iwd~~~~~~~~~~~  145 (380)
                      ..-|+ .+--+=   .|+..-....    .......+|...|..+   ++++.+.+++  .|+.|++|++....+.....
T Consensus        98 ~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~  174 (356)
T 2w18_A           98 VYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ  174 (356)
T ss_dssp             CCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE
T ss_pred             ccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee
Confidence            32221 111110   1111000000    0111112222223222   3343333322  36666666653322222222


Q ss_pred             CCCcCcEEEEEEcc-CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCc---cceEEEEEcCCCCEE------------E
Q psy6984         146 DGHSDWVSCVRFSP-NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT---GYLNTVTVSPDGSLC------------A  209 (380)
Q Consensus       146 ~~~~~~v~~~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~  209 (380)
                      .+|...+..++|++ ++.+.+|++++.|++||+||+++++....+.+|.   ..+.+++|+|+|+++            +
T Consensus       175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la  254 (356)
T 2w18_A          175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES  254 (356)
T ss_dssp             EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred             ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence            35677788888988 5556799999999999999999998887777643   367788999999986            5


Q ss_pred             EEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEE
Q psy6984         210 SGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA  289 (380)
Q Consensus       210 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  289 (380)
                      +|+.|+++++||..+++.+..+.       +++ |++.                                  .....  .
T Consensus       255 SGs~D~tIklWd~~tgk~l~v~~-------~~~-p~Gh----------------------------------~~~~l--s  290 (356)
T 2w18_A          255 LRSPVFQLIVINPKTTLSVGVML-------YCL-PPGQ----------------------------------AGRFL--E  290 (356)
T ss_dssp             ---CCEEEEEEETTTTEEEEEEE-------ECC-CTTC----------------------------------CCCEE--E
T ss_pred             ccCCCcEEEEEECCCCEEEEEEE-------eec-cCCC----------------------------------cceeE--c
Confidence            67788889999988877654221       111 2211                                  01111  2


Q ss_pred             EeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCc-eEEEEEecCCCEEEEEeeCCeE
Q psy6984         290 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM-CLSLAWSTDGQTLFAGYSDNTI  368 (380)
Q Consensus       290 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~g~~dg~v  368 (380)
                      .+.++.++++|+.|++|++||+..+..           +..+.         .|... +..++|||||++|++|+.|++|
T Consensus       291 g~~sg~~lASgS~DgTIkIWDl~tGk~-----------l~tL~---------gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          291 GDVKDHCAAAILTSGTIAIWDLLLGQC-----------TALLP---------PVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCSE-----------EEEEC---------CC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             cccCCCEEEEEcCCCcEEEEECCCCcE-----------EEEec---------CCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            233488999999999999998755433           33222         12222 3358999999999999999999


Q ss_pred             EEEEe
Q psy6984         369 RVWQV  373 (380)
Q Consensus       369 ~iw~~  373 (380)
                      +|||+
T Consensus       351 klWd~  355 (356)
T 2w18_A          351 FVYHY  355 (356)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=9.7e-29  Score=221.03  Aligned_cols=266  Identities=13%  Similarity=0.137  Sum_probs=209.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEE
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCV  155 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  155 (380)
                      ..+++++.|+.|++||+.+++....+..|. .+.+++|+|+++.+ ++++.|+.|++||..+......+...  ..+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--SSPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--SSEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--CCccce
Confidence            467889999999999999999988887664 58999999999977 67779999999998776665554433  379999


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCcEEEEEEec
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKHLHTLVHN  234 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~  234 (380)
                      +|+|+++. ++++++.++.|++||+.+.+.......+ ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+...
T Consensus        80 ~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  157 (391)
T 1l0q_A           80 AVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG  157 (391)
T ss_dssp             EECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             EECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence            99998652 4456667899999999998876666544 468999999999977 78888999999999999988888877


Q ss_pred             CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee---CCCcEEEEec
Q psy6984         235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS---RDKTIKLWNT  311 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~v~iw~~  311 (380)
                      ..+..++|+|++....+     ....++.+.+|+...++....+ .+...+.+++|+|++++|++++   .++.|++||+
T Consensus       158 ~~~~~~~~~~dg~~l~~-----~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYV-----ANFDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             SSEEEEEECTTSSEEEE-----EETTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             CCcceEEECCCCCEEEE-----EeCCCCEEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence            88899999999865322     1234577999999888765443 3456788999999999999887   6899999987


Q ss_pred             ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEE-EEEeeCCeEEEEEee
Q psy6984         312 LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTL-FAGYSDNTIRVWQVS  374 (380)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~g~~dg~v~iw~~~  374 (380)
                      ..+..+..+..                     ...+..++|+|||++| ++++.|+.|++||+.
T Consensus       232 ~~~~~~~~~~~---------------------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          232 GTNKITARIPV---------------------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             TTTEEEEEEEC---------------------CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEEec---------------------CCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            65433222110                     1124678999999988 566789999999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-30  Score=229.28  Aligned_cols=234  Identities=12%  Similarity=0.059  Sum_probs=178.1

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---------CcceEE
Q psy6984          72 LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL---------AHCKFT  142 (380)
Q Consensus        72 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~---------~~~~~~  142 (380)
                      +.+++++|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|+++++|+..         ......
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            44678899999999999999999998887776  466788888887   9999999999999754         333344


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee-CCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS-GHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                      ....+|...|.+++++|.....++++++.|+.|++||+++.+...... .|...+.+++|+|++.+|++|+.|+.|++||
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            445567788999999992223489999999999999999887755443 4455799999999999999999999999999


Q ss_pred             CCCCcEE-EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-ccccceeEEEEeecCCEEEE
Q psy6984         222 LNDGKHL-HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVS  299 (380)
Q Consensus       222 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s  299 (380)
                      +++++.+ ..                                               +. .|...|.+++|+|++.+|++
T Consensus       199 ~~~~~~~~~~-----------------------------------------------~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          199 LSSPDQASSR-----------------------------------------------FPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             SSCTTSCCEE-----------------------------------------------CCCCTTSCEEEEEECTTSSEEEE
T ss_pred             CCCCCCCccE-----------------------------------------------EeccCCCCEEEEEEeCCCCEEEE
Confidence            9876532 11                                               11 14567889999999999999


Q ss_pred             eeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCce--EEEEEecCCCEEEEEee-CCeEEEEEeee
Q psy6984         300 SSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMC--LSLAWSTDGQTLFAGYS-DNTIRVWQVSV  375 (380)
Q Consensus       300 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~~g~~-dg~v~iw~~~~  375 (380)
                      ++ |+.|++||+........           +..      ...+...+  .+++|+|+|++|++++. |+.|+||++..
T Consensus       232 ~~-~~~v~iwd~~~~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          232 EC-DQTVVCFDLRKDVGTLA-----------YPT------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             EE-SSBEEEEETTSSTTCBS-----------SCC------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             Ee-CCeEEEEEcCCCCccee-----------ecc------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence            99 55999999754432111           000      00001111  36999999999999988 99999998853

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.6e-29  Score=228.06  Aligned_cols=227  Identities=13%  Similarity=0.128  Sum_probs=187.3

Q ss_pred             EecCcccceEEEEeCCCCCCeE-EEeeCCCeEEEeecC--CCCCCccccccccc--CCCcceEEEEEccCCCEEEEEeCC
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTI-LSCSRDNTLIIWKLT--RDDTNYGVPQKRLK--GHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~vw~~~--~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ...+|.+.|++++|+|+ +.+| ++++.||+|++|++.  ....     ...+.  .|...|.+++|+|++++|++|+.|
T Consensus        97 ~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~  170 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNV-----LKLRKRFCFSKRPNAISIAEDDTTVIIADKF  170 (450)
T ss_dssp             ---CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSC-----EEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCce-----eeeeecccCCCCceEEEEcCCCCEEEEEeCC
Confidence            44578889999999998 5664 899999999999987  3221     22232  567889999999999999999999


Q ss_pred             CcEEEEECCCCceee----eecccCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          86 KTLRLWDLAAGKTTR----RFEDHTKDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~---~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                      |.|++|++.+++...    .+..|...|.+++|+|+   ++++++++.|+.|++||+...........+|...|.+++|+
T Consensus       171 g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s  250 (450)
T 2vdu_B          171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG  250 (450)
T ss_dssp             SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC
T ss_pred             CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC
Confidence            999999998876554    67789999999999999   99999999999999999887666555556899999999999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-------------------------CccceEEEEEcCCCCEEEEEc-
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-------------------------HTGYLNTVTVSPDGSLCASGG-  212 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~l~~~~-  212 (380)
                       ++  .+|++++.|+.|++||+.+++....+..                         ....+..+.++|+++++++++ 
T Consensus       251 -d~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  327 (450)
T 2vdu_B          251 -KD--YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE  327 (450)
T ss_dssp             -ST--TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred             -CC--CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence             54  4899999999999999998876655542                         234688999999999999998 


Q ss_pred             CCCcEEEEEC--CCC---cEEEEEEecCceEEEEeecCc
Q psy6984         213 KDMNAMLWDL--NDG---KHLHTLVHNDIITALCFSPNR  246 (380)
Q Consensus       213 ~d~~i~i~d~--~~~---~~~~~~~~~~~i~~~~~~~~~  246 (380)
                      .|+.|++|++  ..+   +.+..+.....+.+++|+|++
T Consensus       328 ~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~  366 (450)
T 2vdu_B          328 ATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE  366 (450)
T ss_dssp             TCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE
T ss_pred             CCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc
Confidence            8999999999  555   555666656889999999964

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=8e-29  Score=210.01  Aligned_cols=177  Identities=12%  Similarity=0.080  Sum_probs=138.1

Q ss_pred             CCeEEEeecCCCCCCcccccccccCCCcceEEEEEcc---CCCEEEEEeCCCcEEEEECCCCceeeeecccC---CCeEE
Q psy6984          38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS---DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT---KDVLS  111 (380)
Q Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~---~~v~~  111 (380)
                      |+.|++|++..+..    ....+.+|...++.++|++   ++.+|++|+.|++|+|||+.+++.++.+.+|.   ..+.+
T Consensus       156 d~~V~~~~~s~dG~----~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~  231 (356)
T 2w18_A          156 DQQVEVMTFAEDGG----GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCH  231 (356)
T ss_dssp             TCEEEEEEECTTSC----EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEE
T ss_pred             CCcEEEEEECCCCc----eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEE
Confidence            88888888754321    1234567888889999998   77999999999999999999999999997653   36778


Q ss_pred             EEEeCCCCEE------------EEEeCCCcEEEEeCCCcceEEEe----eCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984         112 VAFSVDNRQI------------VSSSRDKTIKLWNTLAHCKFTIV----EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus       112 ~~~~~~~~~~------------~s~~~d~~v~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      ++|+|+|.++            ++|+.|+++++||..++......    ..+|...+.+..++    ..++++++.|++|
T Consensus       232 vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s----g~~lASgS~DgTI  307 (356)
T 2w18_A          232 KAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK----DHCAAAILTSGTI  307 (356)
T ss_dssp             EEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE----TTEEEEEETTSCE
T ss_pred             EEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC----CCEEEEEcCCCcE
Confidence            8999999876            66889999999998776654433    24665554444433    3478999999999


Q ss_pred             EEEeCCCceeeEeeeCCccceE-EEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         176 KVWNLTNCKLKINHSGHTGYLN-TVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      ++||+.+++....+.+|...+. .++|+|+|++|++|+.|++|++||+
T Consensus       308 kIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          308 AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999998888888877655 5899999999999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.3e-28  Score=217.30  Aligned_cols=252  Identities=14%  Similarity=0.164  Sum_probs=172.9

Q ss_pred             EEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      ||++.+.+.+.....|...|.+++|+|||+++++|+.++ +++|+............   ..+..+.+.+..+ .+++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~   77 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM---RHLSKVRMLHRTN-YVAFVT   77 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC---SCCCEEEECTTSS-EEEEEC
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec---CCeEEEEEcCCCC-EEEEEE
Confidence            566777777777788999999999999999999988775 78999765443332221   2366777877643 244678


Q ss_pred             eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEEecCceEEEEeecCccc
Q psy6984         170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG-KHLHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      +.|+.|++||+.+++....+. +...|.++.++++.  ++++ .|+.|++||+.++ +.+..+..  ....+++++  .+
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~  149 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GL  149 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TE
T ss_pred             CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cE
Confidence            888999999999988776665 56689999999874  3333 4789999999887 55544443  444455555  11


Q ss_pred             ceeeeeeeeeccccceEEEEcCCce----------------eeeeeeccccceeEEEEeecCCEEEEeeCCCc-EEEEec
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGK----------------METPFFSLFRDVLSVAFSVDNRQIVSSSRDKT-IKLWNT  311 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-v~iw~~  311 (380)
                          +.......++.+.+|++..++                ....+..|...|.+++|+|++++|++|+.||+ |++||+
T Consensus       150 ----la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          150 ----LVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             ----EEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred             ----EEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence                111113457889999998754                14556788899999999999999999999998 999987


Q ss_pred             ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         312 LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      ..+..+.           .+.       ...|...|.+++|+|||++|++|+.|+.|+||++...
T Consensus       226 ~~~~~~~-----------~~~-------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          226 EDGVLVR-----------EFR-------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             TTCCEEE-----------EEE-------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCCcEEE-----------EEE-------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            6543322           111       0125567899999999999999999999999998643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=4.5e-27  Score=217.89  Aligned_cols=325  Identities=10%  Similarity=0.071  Sum_probs=232.8

Q ss_pred             eCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccccc-CCCcceEEEEEccCCCEEEEEeCCCcEEEEEC--CCCceee
Q psy6984          24 TNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-GHSHFISDIVLSSDGNYALSGSWDKTLRLWDL--AAGKTTR  100 (380)
Q Consensus        24 ~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~--~~~~~~~  100 (380)
                      ++|. +.++++++.|++|.+||......     ...+. ++.  +..++|+|||++|++++.|+.|.+||+  .+++.+.
T Consensus       145 ~~p~-~~~~vs~~~d~~V~v~D~~t~~~-----~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          145 LDLP-NLFSVTLRDAGQIALVDGDSKKI-----VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCGG-GEEEEEEGGGTEEEEEETTTCCE-----EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             cCCC-CEEEEEEcCCCeEEEEECCCceE-----EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE
Confidence            5665 56888999999999999765432     22333 443  889999999999999999999999999  7888888


Q ss_pred             eecccCCCeEEEEEeC----CCCEEEEEe-CCCcEEEEeCCCcceEEEeeCC---------C-cCcEEEEEEccCCCCCE
Q psy6984         101 RFEDHTKDVLSVAFSV----DNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDG---------H-SDWVSCVRFSPNHQNPI  165 (380)
Q Consensus       101 ~~~~h~~~v~~~~~~~----~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~~  165 (380)
                      .+. +...+..++|+|    ||+++++++ .+++|.+||..+......+...         | ...+..+.++|++.. +
T Consensus       217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~-~  294 (543)
T 1nir_A          217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE-F  294 (543)
T ss_dssp             EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE-E
T ss_pred             EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE-E
Confidence            776 445679999999    999999887 5899999998766555444321         2 236889999997653 6


Q ss_pred             EEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEEEE-EcCCCcEEEEECCCCcEEEEEEe-----cCceE
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLNDGKHLHTLVH-----NDIIT  238 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~-----~~~i~  238 (380)
                      +++...++.|.+||+.+.+... ....+...+..+.|+|+|+++++ +..++.|.+||..+++.+..+..     .....
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            7788889999999998754322 12234556788999999997665 45689999999999988877652     22222


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCC-------ceeeeeeeccccceeEEEEeecCCEEEEee-------CCC
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINH-------GKMETPFFSLFRDVLSVAFSVDNRQIVSSS-------RDK  304 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg  304 (380)
                      .+ ++|++....    ......+..+.+|++..       .+....+..+...+..++++|++++|++++       .++
T Consensus       375 ~~-~~p~~g~~~----~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~  449 (543)
T 1nir_A          375 NF-VHPKYGPVW----STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ  449 (543)
T ss_dssp             EE-EETTTEEEE----EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHT
T ss_pred             cc-CCCCCccEE----EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCc
Confidence            22 355532111    11122457788999887       666677777777788999999999999987       277


Q ss_pred             cEEEEecccceee-eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-----eCCeEEEEEeee
Q psy6984         305 TIKLWNTLAHCKF-TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-----SDNTIRVWQVSV  375 (380)
Q Consensus       305 ~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-----~dg~v~iw~~~~  375 (380)
                      +|.+||+.+.... ..+....           . .....+...+..+.|+|||+.|+++.     .|+.|.|||..+
T Consensus       450 ~v~v~d~~~~~~~~~~~~v~~-----------~-~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          450 SVAVFDLKNLDAKYQVLPIAE-----------W-ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             CEEEEETTCTTSCCEEECHHH-----------H-HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             eEEEEECCCCCCCeEEeechh-----------h-cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            9999997654322 1111000           0 00112345678999999999988653     479999999754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=7.1e-28  Score=216.77  Aligned_cols=308  Identities=12%  Similarity=0.056  Sum_probs=223.0

Q ss_pred             ccceEEEEeCCCCCCeEEEee----CCC----eEEEeec--CCCCCCcccccccccCCCcceEEEEEcc-----------
Q psy6984          16 NGWVTQIATNPKFPDTILSCS----RDN----TLIIWKL--TRDDTNYGVPQKRLKGHSHFISDIVLSS-----------   74 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~----~dg----~v~vw~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----------   74 (380)
                      ...++...|.+...+++++|+    .||    ++++||+  .....   +....+.+|...+..+++.+           
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~  138 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV---LAQNSYKVNKQWLRYAGHTASDEVFEKLTGI  138 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE---EEEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE---EeeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence            346777788887667888886    568    9999998  54431   11234667777777666554           


Q ss_pred             ---CCCEEEEEeCC------CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCcceEE
Q psy6984          75 ---DGNYALSGSWD------KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK---TIKLWNTLAHCKFT  142 (380)
Q Consensus        75 ---~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~---~v~iwd~~~~~~~~  142 (380)
                         .+..++.++.+      +.|++||+.. ...+.+..|...+.+++|+|||+.+++++.++   .|++||+.++....
T Consensus       139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             CCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             CCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE
Confidence               25667666654      7999999974 45667778999999999999999999999885   99999987765543


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC-CC--cE
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK-DM--NA  217 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i  217 (380)
                      .  ..+...+.+++|+|+++. ++++++.++  .|++||+.+.+. ..+..|...+.+++|+|+|++|++++. ++  .|
T Consensus       218 l--~~~~~~~~~~~~spdg~~-la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i  293 (415)
T 2hqs_A          218 V--ASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV  293 (415)
T ss_dssp             E--ECCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             e--ecCCCcccCEEEcCCCCE-EEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence            3  246678999999998753 334666555  499999988765 455667788999999999999888776 44  68


Q ss_pred             EEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE
Q psy6984         218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  297 (380)
                      ++||+.+++......+...+..++|+|++.+......   ......+.+|+..+++.. .+..+. .+.+++|+|+|++|
T Consensus       294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~---~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l  368 (415)
T 2hqs_A          294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS---NGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMV  368 (415)
T ss_dssp             EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE---CSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEE
T ss_pred             EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEEC---cCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEE
Confidence            8889988765443345677889999999876443221   112357888999887663 333433 78899999999999


Q ss_pred             EEeeCCC---cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC
Q psy6984         298 VSSSRDK---TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ  357 (380)
Q Consensus       298 ~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  357 (380)
                      ++++.|+   .|++|++..+..            ..         ...+...+.+++|+|.-.
T Consensus       369 ~~~s~~~~~~~l~~~d~~g~~~------------~~---------l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          369 IYSSSQGMGSVLNLVSTDGRFK------------AR---------LPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEETTEEEEEEEETTSCCE------------EE---------CCCSSSEEEEEEECCCCC
T ss_pred             EEEEcCCCccEEEEEECCCCcE------------EE---------eeCCCCCCcCCccccccc
Confidence            9988776   788887532211            11         123455688999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.8e-25  Score=216.24  Aligned_cols=321  Identities=13%  Similarity=0.095  Sum_probs=220.3

Q ss_pred             ccceEEEEeCCCCCCeEEEeeC-CC-----eEEEeecCCCCCCcccccccccCCC----------------------cce
Q psy6984          16 NGWVTQIATNPKFPDTILSCSR-DN-----TLIIWKLTRDDTNYGVPQKRLKGHS----------------------HFI   67 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~-dg-----~v~vw~~~~~~~~~~~~~~~~~~h~----------------------~~v   67 (380)
                      ...|+++.|+|+ +++|++++. |+     +|++|++.......   ......+.                      ..+
T Consensus        36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (741)
T 2ecf_A           36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGI  111 (741)
T ss_dssp             CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEES
T ss_pred             CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCc
Confidence            356999999998 788999888 88     99999986543211   11111111                      347


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984          68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~  145 (380)
                      ..++|+|||++|++++. +.|++||+.+++  ....+..|...+..++|+|||+.++.++. +.|.+||+.++.......
T Consensus       112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC
T ss_pred             ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc
Confidence            88999999999999987 899999998873  44556678888999999999999998875 589999987654433322


Q ss_pred             CCCcCc----------------EEEEEEccCCCCCEEEEEeCCC---------------------------------eEE
Q psy6984         146 DGHSDW----------------VSCVRFSPNHQNPIIVSAGWDR---------------------------------MVK  176 (380)
Q Consensus       146 ~~~~~~----------------v~~~~~~~~~~~~~l~s~~~d~---------------------------------~v~  176 (380)
                       .+...                +..++|+|+++.  |++++.|+                                 .|+
T Consensus       190 -~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~--l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          190 -DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA--IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             -CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC--EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             -CCccceeccccceeeeeccccccceEECCCCCE--EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence             22221                367999998864  55554444                                 788


Q ss_pred             EEeCCC-ceeeEeee--CCccceEEEEEcCCCCEEEEEcC-----CCcEEEEECCCCcEEEEEEecC-----ceEEEEee
Q psy6984         177 VWNLTN-CKLKINHS--GHTGYLNTVTVSPDGSLCASGGK-----DMNAMLWDLNDGKHLHTLVHND-----IITALCFS  243 (380)
Q Consensus       177 iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~-----~i~~~~~~  243 (380)
                      +||+.+ .+......  .|...+..++| |||++|++++.     +..|++||+.+++....+....     .+..++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999987 66543332  46778999999 99999887653     5789999999988766554332     34688999


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcC-CceeeeeeeccccceeEE-EEeecCCEEEE-eeCCC--cEEEEecccceeee
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETPFFSLFRDVLSV-AFSVDNRQIVS-SSRDK--TIKLWNTLAHCKFT  318 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~v~iw~~~~~~~~~  318 (380)
                      |++.+...      ...++...+|.++ .++ ...+..+...+..+ .|+|+++.|+. ++.|+  .+++|++..     
T Consensus       346 pdg~~~~~------~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~-----  413 (741)
T 2ecf_A          346 DDGSILWS------SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL-----  413 (741)
T ss_dssp             TTSCEEEE------ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET-----
T ss_pred             CCCeEEEE------ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc-----
Confidence            99873221      1223444555543 233 55566666677777 59999997754 44555  899997532     


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC----CeEEEEEe
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD----NTIRVWQV  373 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d----g~v~iw~~  373 (380)
                          .+. ....+.          ....+..++|||||+.|+....+    ..+.+|+.
T Consensus       414 ----~g~-~~~~l~----------~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          414 ----QGG-QPQRLS----------KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             ----TCC-CCEECC----------CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             ----CCC-Ceeecc----------cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence                111 011111          12345689999999998865443    35777764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=2.5e-25  Score=222.59  Aligned_cols=322  Identities=13%  Similarity=0.063  Sum_probs=228.0

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCC------CeEEEeecCCCCCCcccccccccCCCcce-------EEEEEccCC
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRD------NTLIIWKLTRDDTNYGVPQKRLKGHSHFI-------SDIVLSSDG   76 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~d------g~v~vw~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~   76 (380)
                      ..|.+|.+.+.+++|+|+ +++|+.++.+      ..|.+|++....      ...+..|...+       ..++|+|||
T Consensus        46 ~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~~~~SpDg  118 (1045)
T 1k32_A           46 RKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGE------IKRITYFSGKSTGRRMFTDVAGFDPDG  118 (1045)
T ss_dssp             EEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTE------EEECCCCCEEEETTEECSEEEEECTTC
T ss_pred             EEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCCCC------eEEcccCCCcccccccccccccCCCCC
Confidence            467789999999999998 6788877543      378899875431      34567788777       899999999


Q ss_pred             CEEEEEeCC------CcEEEEECCCCceee-------------------------------------------------e
Q psy6984          77 NYALSGSWD------KTLRLWDLAAGKTTR-------------------------------------------------R  101 (380)
Q Consensus        77 ~~l~s~~~d------~~i~vwd~~~~~~~~-------------------------------------------------~  101 (380)
                      +.+++++.+      ..|++|++.+++...                                                 .
T Consensus       119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~  198 (1045)
T 1k32_A          119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK  198 (1045)
T ss_dssp             CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred             EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence            977777754      358888876554321                                                 1


Q ss_pred             ecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984         102 FEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       102 ~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~  180 (380)
                      +..|...+.++.|+++ ..+++++.|+.+++|.... ......+. .|. .+...+|+|+++.  ++.+ .++.|.+||+
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~--la~~-~~~~i~~~d~  272 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRR--ILFS-KGGSIYIFNP  272 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSSC--EEEE-ETTEEEEECT
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCCE--EEEE-eCCEEEEecC
Confidence            2346667788888887 5666778889999997542 21222222 233 3556799998763  5544 4899999999


Q ss_pred             CCceeeEeeeC-----------CccceEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC-ceEEEEeecCcc
Q psy6984         181 TNCKLKINHSG-----------HTGYLNTVTVS-PDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND-IITALCFSPNRS  247 (380)
Q Consensus       181 ~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~i~~~~~~~~~~  247 (380)
                      ....+. .+.+           |...+..++|+ |+|+++++++ ++.+++|+...++......+.. .+..++|+ ++.
T Consensus       273 ~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~  349 (1045)
T 1k32_A          273 DTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV  349 (1045)
T ss_dssp             TTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE
T ss_pred             CceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC
Confidence            544333 3333           33468899999 9999998887 7899999998887655444555 78889998 765


Q ss_pred             cceeeeeeeeeccccceE-EEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccce
Q psy6984         248 FQKIKLDISRTLQKSNLI-LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKK  326 (380)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~  326 (380)
                      ......      ....++ +|+...++... +..+...+..++|+|||++|++++.++.|++||+.++....+..     
T Consensus       350 ~l~~~s------~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-----  417 (1045)
T 1k32_A          350 AFIHGT------REGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-----  417 (1045)
T ss_dssp             EEEEEE------TTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----
T ss_pred             eEEEEE------CCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-----
Confidence            433221      144666 77877665433 33566778999999999999999999999999875543322211     


Q ss_pred             EEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC----------eEEEEEee
Q psy6984         327 MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN----------TIRVWQVS  374 (380)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg----------~v~iw~~~  374 (380)
                                     .+...+..++|||||++|++++.++          .|++||+.
T Consensus       418 ---------------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          418 ---------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             ---------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             ---------------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence                           1233456789999999999877654          89999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1e-24  Score=196.19  Aligned_cols=279  Identities=14%  Similarity=0.109  Sum_probs=201.4

Q ss_pred             cceEEEEEccCC-CEEEEEe----CCC----cEEEEEC--CCCcee--eeecccCCCeEEEEEeC--------------C
Q psy6984          65 HFISDIVLSSDG-NYALSGS----WDK----TLRLWDL--AAGKTT--RRFEDHTKDVLSVAFSV--------------D  117 (380)
Q Consensus        65 ~~v~~~~~~~~~-~~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~--------------~  117 (380)
                      ..+....|.+.| +++++|+    .||    .|++||+  .+++.+  ..+..|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            356667777776 4666776    467    8999999  888876  45778887777776664              2


Q ss_pred             CCEEEEEeCC------CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC---eEEEEeCCCceeeEe
Q psy6984         118 NRQIVSSSRD------KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR---MVKVWNLTNCKLKIN  188 (380)
Q Consensus       118 ~~~~~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~  188 (380)
                      +..++.++.+      +.|++||..........  .|...+.+++|+|+++  .|++++.++   .|++||+.+++.. .
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~--~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg~~~-~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANGAVR-Q  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE--EESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEe--CCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCCcEE-E
Confidence            5667666654      79999998755443332  4677899999999875  677777775   9999999987764 4


Q ss_pred             eeCCccceEEEEEcCCCCEEE-EEcCCCc--EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984         189 HSGHTGYLNTVTVSPDGSLCA-SGGKDMN--AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLI  265 (380)
Q Consensus       189 ~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (380)
                      ...|...+.+++|+|+|+.|+ +++.++.  |++||+.+++......+...+..++|+|++........   ......++
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~---~~g~~~i~  294 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD---QAGRPQVY  294 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC---TTSSCEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC---CCCCcEEE
Confidence            556778899999999999887 6666654  99999998877555567778999999999875433221   01123577


Q ss_pred             EEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC---CcEEEEecccceeeeEeecccceEEEeeCcccccccCCC
Q psy6984         266 LYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD---KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKA  342 (380)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (380)
                      +|+...++.. .+..+...+.+++|+|+|++|++++.+   ..|++|+...+...            .+.         .
T Consensus       295 ~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~------------~l~---------~  352 (415)
T 2hqs_A          295 KVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ------------VLS---------S  352 (415)
T ss_dssp             EEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE------------ECC---------C
T ss_pred             EEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE------------Eec---------C
Confidence            7788776543 233445568899999999999988764   57889986443211            110         0


Q ss_pred             CCCceEEEEEecCCCEEEEEeeCC---eEEEEEee
Q psy6984         343 DPPMCLSLAWSTDGQTLFAGYSDN---TIRVWQVS  374 (380)
Q Consensus       343 ~~~~~~~~~~s~dg~~l~~g~~dg---~v~iw~~~  374 (380)
                      + ..+..++|+|||++|++++.++   .|.+|++.
T Consensus       353 ~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          353 T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            1 1467899999999999888776   68888764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.2e-24  Score=209.94  Aligned_cols=320  Identities=12%  Similarity=0.065  Sum_probs=208.5

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc---ceEEEEEccCCCEEEEEeCC--------
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH---FISDIVLSSDGNYALSGSWD--------   85 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d--------   85 (380)
                      ..+.+++|+|+ ++++++ +.||+|++||+......     ..+..|..   .|.+++|+|||++|++++.+        
T Consensus        17 ~~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~-----~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~   89 (723)
T 1xfd_A           17 IHDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTST-----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSY   89 (723)
T ss_dssp             CCCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCE-----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCC
T ss_pred             ccccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEE-----EEeccccccccccceEEECCCCCEEEEEecCccceeecc
Confidence            34678899998 566665 78999999998754321     22334443   48999999999999999874        


Q ss_pred             -CcEEEEECCCCceeeee---cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-----------
Q psy6984          86 -KTLRLWDLAAGKTTRRF---EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD-----------  150 (380)
Q Consensus        86 -~~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-----------  150 (380)
                       +.|++||+.+++. ..+   ..|...+..++|+|||+.++.++. +.|.+||..++........++..           
T Consensus        90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~  167 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY  167 (723)
T ss_dssp             CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred             eeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence             7888999998876 333   234445888999999999999887 78999998766554443322221           


Q ss_pred             ------cEEEEEEccCCCCCEEEEEeCCC----------------------------------eEEEEeCCCceeeEeee
Q psy6984         151 ------WVSCVRFSPNHQNPIIVSAGWDR----------------------------------MVKVWNLTNCKLKINHS  190 (380)
Q Consensus       151 ------~v~~~~~~~~~~~~~l~s~~~d~----------------------------------~v~iwd~~~~~~~~~~~  190 (380)
                            .+.+++|+|+++  .|++++.++                                  .|++||+.+.+....+.
T Consensus       168 ~ee~~~~~~~~~~SpDg~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          168 EEEILKTHIAHWWSPDGT--RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             HHTTSSSSEEEEECTTSS--EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             EEEeccCcceEEECCCCC--EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence                  237899999876  465554332                                  79999998876433443


Q ss_pred             CC------ccceEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEEEEE--ecCce----EEEEeecCcccceee-e
Q psy6984         191 GH------TGYLNTVTVSPDGSLCASGGK----DMNAMLWDLNDGKHLHTLV--HNDII----TALCFSPNRSFQKIK-L  253 (380)
Q Consensus       191 ~~------~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~--~~~~i----~~~~~~~~~~~~~~~-~  253 (380)
                      .+      ...+..++|+|||+++++.+.    +..|++||+.+++....+.  +...+    ..++|+|++...... .
T Consensus       246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  325 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA  325 (723)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred             CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence            33      567899999999998876643    3679999999988665543  22333    378999998764432 1


Q ss_pred             eeeee-ccccceEEEE-cCCcee--eeeeeccccceeE-EEEeecCCEEEEeeCC---CcEEEEecccceeeeEeecccc
Q psy6984         254 DISRT-LQKSNLILYP-INHGKM--ETPFFSLFRDVLS-VAFSVDNRQIVSSSRD---KTIKLWNTLAHCKFTIVDLETK  325 (380)
Q Consensus       254 ~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~  325 (380)
                      ..... .....+++|+ ...+..  ...+......+.. ++|+|||+.|+..+.+   +.+++|++...         +.
T Consensus       326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~---------~~  396 (723)
T 1xfd_A          326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV---------GN  396 (723)
T ss_dssp             ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS---------TT
T ss_pred             cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC---------CC
Confidence            11000 0012456666 233330  3333333344544 6999999998766654   78999975321         11


Q ss_pred             eEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE
Q psy6984         326 KMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG  362 (380)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g  362 (380)
                      .....+..      ...+...+..++|||||++|+..
T Consensus       397 ~~~~~l~~------~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          397 FNRQCLSC------DLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             CCCBCSST------TSSSSCCCCEEEECTTSSEEEEE
T ss_pred             CCcceecc------cccCCCCeEEEEECCCCCEEEEE
Confidence            00000100      00023345689999999988764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=6.6e-24  Score=196.72  Aligned_cols=302  Identities=13%  Similarity=0.146  Sum_probs=216.2

Q ss_pred             ceeeEEeEEec-CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecC--CCCCCcccccccccCCCcceEEEEEcc----C
Q psy6984           3 TETLQLRGTLN-GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLT--RDDTNYGVPQKRLKGHSHFISDIVLSS----D   75 (380)
Q Consensus         3 ~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~----~   75 (380)
                      .++.++..++. +|.  +..+.++|+ +++|++++.|++|++||+.  ...     ....+. +...+..++|+|    |
T Consensus       166 ~~t~~~~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~-----~~~~i~-~g~~p~~va~sp~~~~d  236 (543)
T 1nir_A          166 GDSKKIVKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPT-----KVAEIK-IGIEARSVESSKFKGYE  236 (543)
T ss_dssp             TTTCCEEEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCE-----EEEEEE-CCSEEEEEEECCSTTCT
T ss_pred             CCCceEEEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECcCCCCc-----EEEEEe-cCCCcceEEeCCCcCCC
Confidence            44566777887 444  889999998 7899999999999999983  221     122233 344678999999    9


Q ss_pred             CCEEEEEe-CCCcEEEEECCCCceeeeecc----------cCC-CeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCcceEE
Q psy6984          76 GNYALSGS-WDKTLRLWDLAAGKTTRRFED----------HTK-DVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFT  142 (380)
Q Consensus        76 ~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~~~~~~  142 (380)
                      |++|++++ .++.|.+||..+++.+..+..          |.. .+..+.++|++.. +++...++.|.+||........
T Consensus       237 g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~  316 (543)
T 1nir_A          237 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT  316 (543)
T ss_dssp             TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred             CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence            99999988 489999999999998887754          223 6889999997765 4567788999999976543222


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC----CccceEEEEEcCC-CCEEEEEc-CCCc
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG----HTGYLNTVTVSPD-GSLCASGG-KDMN  216 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-~d~~  216 (380)
                      .....+...+.++.|+|+++. +++++..+++|.+||+.++++......    |.+....+ ++|+ +..++++. .|+.
T Consensus       317 ~~~i~~~~~~~~~~~spdg~~-l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~  394 (543)
T 1nir_A          317 VTSIGAAPFLHDGGWDSSHRY-FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS  394 (543)
T ss_dssp             EEEEECCSSCCCEEECTTSCE-EEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE
T ss_pred             eEEeccCcCccCceECCCCCE-EEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce
Confidence            111124556778999998752 344556689999999999887766553    54433333 4776 66677775 6899


Q ss_pred             EEEEECCC-------CcEEEEEEe-cCceEEEEeecCcccceeeeeeee-eccccceEEEEcCCceeeeee---------
Q psy6984         217 AMLWDLND-------GKHLHTLVH-NDIITALCFSPNRSFQKIKLDISR-TLQKSNLILYPINHGKMETPF---------  278 (380)
Q Consensus       217 i~i~d~~~-------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------  278 (380)
                      |.+||+.+       .+.+..+.. ...+..+.++|++++......... ...+..+.+|++.+++.....         
T Consensus       395 V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~  474 (543)
T 1nir_A          395 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL  474 (543)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC
T ss_pred             EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhccc
Confidence            99999988       788888864 456778999999876443221110 002568999999887654222         


Q ss_pred             eccccceeEEEEeecCCEEEEe-----eCCCcEEEEecccce
Q psy6984         279 FSLFRDVLSVAFSVDNRQIVSS-----SRDKTIKLWNTLAHC  315 (380)
Q Consensus       279 ~~~~~~v~~~~~s~~~~~l~s~-----~~dg~v~iw~~~~~~  315 (380)
                      ..+...+..+.|+|+|++++.+     +.|+.|.+||..+..
T Consensus       475 ~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          475 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence            2335678899999999998865     247999999865443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=3e-24  Score=207.75  Aligned_cols=284  Identities=13%  Similarity=0.090  Sum_probs=204.6

Q ss_pred             CcceEEEEEccCCCEEEEEeC-CC-----cEEEEECCCCceeeeecccCC------------------------CeEEEE
Q psy6984          64 SHFISDIVLSSDGNYALSGSW-DK-----TLRLWDLAAGKTTRRFEDHTK------------------------DVLSVA  113 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~h~~------------------------~v~~~~  113 (380)
                      ...+..++|+|||++|++++. |+     .|++||+.+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            345889999999999999998 88     899999999887776655433                        378899


Q ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCc---ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee
Q psy6984         114 FSVDNRQIVSSSRDKTIKLWNTLAH---CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS  190 (380)
Q Consensus       114 ~~~~~~~~~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  190 (380)
                      |+|||+++++++. +.|.+||+.++   ....  ...+...+.+++|+|+++  .|+.++ ++.|++||+.+++......
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~--l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ--LTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB--CCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEECCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE--cccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEecc
Confidence            9999999999887 89999998765   3322  234567799999999876  566665 5699999998876554333


Q ss_pred             CCccc----------------eEEEEEcCCCCEEEEEcCCC---------------------------------cEEEEE
Q psy6984         191 GHTGY----------------LNTVTVSPDGSLCASGGKDM---------------------------------NAMLWD  221 (380)
Q Consensus       191 ~~~~~----------------i~~~~~~~~~~~l~~~~~d~---------------------------------~i~i~d  221 (380)
                      .+...                +..++|+|||++|++++.|+                                 .|++||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            33221                47799999999999987765                                 889999


Q ss_pred             CCC-CcEEEEE---EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccc----ceeEEEEeec
Q psy6984         222 LND-GKHLHTL---VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR----DVLSVAFSVD  293 (380)
Q Consensus       222 ~~~-~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~  293 (380)
                      +.+ ++.....   .+...+..++| |++........ ........+++|+..+++....+..+..    .+..++|+||
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            988 7654433   24567889999 99876543321 1122356788899888776544433332    3468899999


Q ss_pred             CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEE-EEecCCCEEEE-EeeCC--eEE
Q psy6984         294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSL-AWSTDGQTLFA-GYSDN--TIR  369 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~dg~~l~~-g~~dg--~v~  369 (380)
                      |+++++++.||.+++|....         .+.  ...+         ..+...+..+ +|+|||+.|+. ++.++  .++
T Consensus       348 g~~~~~~~~~g~~~l~~~~~---------~~~--~~~l---------~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~  407 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDS---------KGK--AAAL---------THGNWSVDELLAVDEKAGLAYFRAGIESARESQ  407 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECS---------SSC--EEES---------CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred             CeEEEEecCCCccEEEEEcC---------CCC--eeee---------eecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence            99999999999999986531         111  1111         1122345566 59999998764 55555  899


Q ss_pred             EEEeee
Q psy6984         370 VWQVSV  375 (380)
Q Consensus       370 iw~~~~  375 (380)
                      ||++..
T Consensus       408 l~~~~~  413 (741)
T 2ecf_A          408 IYAVPL  413 (741)
T ss_dssp             EEEEET
T ss_pred             EEEEEc
Confidence            999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=2.5e-23  Score=181.60  Aligned_cols=277  Identities=11%  Similarity=0.103  Sum_probs=194.3

Q ss_pred             EeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-CCcEEEEECCCCce-ee
Q psy6984          23 ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-DKTLRLWDLAAGKT-TR  100 (380)
Q Consensus        23 ~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~-~~  100 (380)
                      .+.+.....+++++.++.|++||.......     .....+...+ .++|+|+|+++++++. ++.|++||+.+++. ..
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~   77 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV   77 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEE-----EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccccee-----eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence            344543456888889999999998654321     1222334455 9999999997776665 88999999999887 66


Q ss_pred             eecccCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe-EE
Q psy6984         101 RFEDHTKDVLSVAFSVDNRQIVSSSRDK---TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM-VK  176 (380)
Q Consensus       101 ~~~~h~~~v~~~~~~~~~~~~~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~-v~  176 (380)
                      .+..+..+..+++|+|++++++++..++   .|.+||............  .....+++|+|+++. ++++...++. |.
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~-l~~~~~~~~~~i~  154 (331)
T 3u4y_A           78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNG-LILIDRSSANTVR  154 (331)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSC-EEEEEETTTTEEE
T ss_pred             ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCE-EEEEecCCCceEE
Confidence            6666666655599999999999555553   899999877665544432  234689999998764 5566666677 99


Q ss_pred             EEeCCCceeeE----eeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCcE---EEEEEecCceEEEEeecCccc
Q psy6984         177 VWNLTNCKLKI----NHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKH---LHTLVHNDIITALCFSPNRSF  248 (380)
Q Consensus       177 iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~~~~~~~  248 (380)
                      +|++.......    ........+..++|+|+|+++ +++..++.|.+||+.+++.   +..+.....+..++|+|++.+
T Consensus       155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  234 (331)
T 3u4y_A          155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGST  234 (331)
T ss_dssp             EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred             EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCE
Confidence            99987533221    111234457899999999965 5555789999999998887   777777778889999999875


Q ss_pred             ceeeeeeeeeccccceEEEEcCCcee--eeeeecc----cc---ceeEEEEeecCCEEEEee-CCCcEEEEeccc
Q psy6984         249 QKIKLDISRTLQKSNLILYPINHGKM--ETPFFSL----FR---DVLSVAFSVDNRQIVSSS-RDKTIKLWNTLA  313 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~---~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~  313 (380)
                      .....     .....+.+|+..+++.  ...+...    ..   ....++|+||+++|+.++ .++.|++|++..
T Consensus       235 l~v~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          235 VYVLT-----ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             EEEEC-----SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             EEEEE-----cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            43221     1345578899887776  2211111    11   124589999999886555 467999998754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=1.8e-23  Score=209.16  Aligned_cols=286  Identities=12%  Similarity=0.086  Sum_probs=216.2

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      ..+.+|.+.+.++.|+++  .++++++.|+++++|.++.....    ...+..|. .+....|+|||++|+.+. ++.|+
T Consensus       197 ~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~----~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~  268 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKD----LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIY  268 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCS----CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEE
T ss_pred             EECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCc----ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEE
Confidence            345799999999999876  57778888999999987643211    22334444 356779999999998885 89999


Q ss_pred             EEECCCCceeeeecc-----------cCCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC-cEEEEE
Q psy6984          90 LWDLAAGKTTRRFED-----------HTKDVLSVAFS-VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD-WVSCVR  156 (380)
Q Consensus        90 vwd~~~~~~~~~~~~-----------h~~~v~~~~~~-~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~  156 (380)
                      +||+...+.. .+..           |...+.+++|+ |||+.+++++ ++.+.+|+........  ...+.. .+.+++
T Consensus       269 ~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~  344 (1045)
T 1k32_A          269 IFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRRG  344 (1045)
T ss_dssp             EECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSCCSCEEEEEEC
T ss_pred             EecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccCCCcceEEeee
Confidence            9999544333 4443           34468899999 9999999888 7889999976654332  234555 788999


Q ss_pred             EccCCCCCEEEEEeCCCeEE-EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-Eec
Q psy6984         157 FSPNHQNPIIVSAGWDRMVK-VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-VHN  234 (380)
Q Consensus       157 ~~~~~~~~~l~s~~~d~~v~-iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~  234 (380)
                      |+ +++  .|+.++.+..+. +||+...+..... +|...+..++|+|+|++|++++.++.+++||+.+++..... .+.
T Consensus       345 ~s-dg~--~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~  420 (1045)
T 1k32_A          345 GD-TKV--AFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE  420 (1045)
T ss_dssp             SS-SEE--EEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             Ec-CCC--eEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence            98 654  566777788888 9999876654333 77788999999999999999999999999999999877666 466


Q ss_pred             CceEEEEeecCcccceeeeeee----eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         235 DIITALCFSPNRSFQKIKLDIS----RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      ..+..++|+|++.+........    .......+++|+...++ ...+..+...+..++|+|||++|++++.++..+.|+
T Consensus       421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            7788999999998654332110    00123578899998877 455666667788999999999999999988888887


Q ss_pred             cc
Q psy6984         311 TL  312 (380)
Q Consensus       311 ~~  312 (380)
                      ..
T Consensus       500 ~~  501 (1045)
T 1k32_A          500 RV  501 (1045)
T ss_dssp             SS
T ss_pred             hh
Confidence            54

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=4.6e-23  Score=180.53  Aligned_cols=280  Identities=12%  Similarity=0.176  Sum_probs=181.1

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-CcEEEEECC--CCce--eeeeccc
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-KTLRLWDLA--AGKT--TRRFEDH  105 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~--~~~~--~~~~~~h  105 (380)
                      ++++++.|+.|++|++.... ..  .......|...+.+++|+|++++|++++.+ +.|.+|++.  +++.  +..+..+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEG-AL--TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-CE--EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCC-cE--EEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            45555789999999985321 11  111123466678899999999999998887 999999997  5543  3334433


Q ss_pred             CCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCC---cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeC
Q psy6984         106 TKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLA---HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNL  180 (380)
Q Consensus       106 ~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~  180 (380)
                      . .+..++|+|+++.+++++. ++.|.+||+..   ....... . ....+.+++|+|+++  .+++++ .++.|++||+
T Consensus        84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d~  158 (343)
T 1ri6_A           84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNR--TLWVPALKQDRICLFTV  158 (343)
T ss_dssp             S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSS--EEEEEEGGGTEEEEEEE
T ss_pred             C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCC--EEEEecCCCCEEEEEEe
Confidence            3 7889999999998876664 88899999832   2222222 2 223478899999865  455554 8899999999


Q ss_pred             CC-ceeeE----eeeC-CccceEEEEEcCCCCEEEE-EcCCCcEEEEECCC--CcEEEEEEecCceEEEEeecCccccee
Q psy6984         181 TN-CKLKI----NHSG-HTGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLND--GKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       181 ~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      .+ .+...    .... ....+..++|+|+++++++ +..++.+.+||+..  ++......       +...+.      
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~-------~~~~~~------  225 (343)
T 1ri6_A          159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT-------LDMMPE------  225 (343)
T ss_dssp             CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE-------EECSCT------
T ss_pred             cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee-------ccccCc------
Confidence            87 54322    1222 2346888999999997654 45889999999853  32110000       000000      


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEE-EeeCCCcEEEEecccceeeeEeecccceEEEe
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE  330 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  330 (380)
                                          +      ......+..++|+|++++|+ ++..|+.|++|++.....       +...+..
T Consensus       226 --------------------~------~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~-------~~~~~~~  272 (343)
T 1ri6_A          226 --------------------N------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-------VLSKEGF  272 (343)
T ss_dssp             --------------------T------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-------CEEEEEE
T ss_pred             --------------------c------ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-------ceEEeee
Confidence                                0      00112355789999999877 455789999998752100       0111111


Q ss_pred             eCcccccccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEEee
Q psy6984         331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQVS  374 (380)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~~~  374 (380)
                      +..         +. .+..++|+|||++|++++ .++.|.+|++.
T Consensus       273 ~~~---------~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          273 QPT---------ET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEC---------SS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ecC---------CC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            110         11 145789999999988877 68999999775

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=3.5e-22  Score=175.78  Aligned_cols=271  Identities=12%  Similarity=0.102  Sum_probs=199.1

Q ss_pred             cceEEEEEccCCCEEEEEeC-------CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCC
Q psy6984          65 HFISDIVLSSDGNYALSGSW-------DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTL  136 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~  136 (380)
                      ..+..++++|+++++++++.       ++.|.+||..+++....+.. ...+..++|+|+++.++ +...++.|.+||..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            45788999999999988875       46899999999988887754 34577899999999655 45567999999987


Q ss_pred             CcceEEEeeCCCcC--------cEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCE
Q psy6984         137 AHCKFTIVEDGHSD--------WVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSL  207 (380)
Q Consensus       137 ~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  207 (380)
                      +......+..+...        .+.+++++|+++. ++++. +.++.|.+||+.+.+.......+...+..++++|+|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT-VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCE-EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            76655544432211        2688999998753 33333 45889999999998877666645556888999999999


Q ss_pred             EEEEcCCCcEEEEECCCCcEEEEEEe-----cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984         208 CASGGKDMNAMLWDLNDGKHLHTLVH-----NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF  282 (380)
Q Consensus       208 l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (380)
                      +++++.++.+.+||..+++.+..+..     ...+..++|+|++......     ....+.+.+|+..+++....+....
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-----DSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-----ESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-----eCCCCEEEEEECCCCcEEEEEEcCC
Confidence            99999999999999999988877653     3346789999998754322     1234778899998877655443222


Q ss_pred             cceeEEEEeecCCEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE
Q psy6984         283 RDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA  361 (380)
Q Consensus       283 ~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  361 (380)
                        ...++|+|++++++.++ .++.|.+||..++.....+..                     ......++|+|||++|++
T Consensus       274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---------------------PTHPNSLALSADGKTLYV  330 (353)
T ss_dssp             --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------CSEEEEEEECTTSCEEEE
T ss_pred             --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---------------------CCCCCeEEEcCCCCEEEE
Confidence              35799999999655554 689999998755443322211                     113467999999998877


Q ss_pred             EeeC
Q psy6984         362 GYSD  365 (380)
Q Consensus       362 g~~d  365 (380)
                      +..+
T Consensus       331 ~~~~  334 (353)
T 3vgz_A          331 SVKQ  334 (353)
T ss_dssp             EEEC
T ss_pred             EEcc
Confidence            6655

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=1.9e-23  Score=201.10  Aligned_cols=319  Identities=15%  Similarity=0.185  Sum_probs=204.2

Q ss_pred             eEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-ccc-ccccc-----------cCCCcceEEEEEccCCCEEEEEeCC
Q psy6984          19 VTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGV-PQKRL-----------KGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~-~~~~~-----------~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      +..+.|.   ++.+++++.|+ | +||+...... ..+ ....+           ..+...|.+++|+|| ++++.+. +
T Consensus        28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~  100 (706)
T 2z3z_A           28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q  100 (706)
T ss_dssp             CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred             CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence            4445565   35677777787 8 9998754320 111 00000           011145899999999 6666554 5


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----cceEEEeeCCCcC----------
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-----HCKFTIVEDGHSD----------  150 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-----~~~~~~~~~~~~~----------  150 (380)
                      +.|++||+.+++... +..+...+.+++|+|||+.++++ .++.|.+||+.+     +........++..          
T Consensus       101 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e  178 (706)
T 2z3z_A          101 GGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR  178 (706)
T ss_dssp             TEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred             CEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence            999999998876554 34566778889999999999985 679999999876     5443332222221          


Q ss_pred             ---cEEEEEEccCCCCCEEEEEe---------------------------------CCCeEEEEeCCCceeeEeee--CC
Q psy6984         151 ---WVSCVRFSPNHQNPIIVSAG---------------------------------WDRMVKVWNLTNCKLKINHS--GH  192 (380)
Q Consensus       151 ---~v~~~~~~~~~~~~~l~s~~---------------------------------~d~~v~iwd~~~~~~~~~~~--~~  192 (380)
                         .+.++.|+|+++  .|++++                                 .+..|++||+.+.+......  .|
T Consensus       179 e~~~~~~~~~SpDg~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  256 (706)
T 2z3z_A          179 EFGIEKGTFWSPKGS--CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK  256 (706)
T ss_dssp             CTTCCCSEEECTTSS--EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred             hcCCCceEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence               147899999876  566655                                 44689999998877543332  45


Q ss_pred             ccceEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEE---ecC---ceEEEEeec--Ccccceeeeeeeeec
Q psy6984         193 TGYLNTVTVSPDGSLCASGGKDM-----NAMLWDLNDGKHLHTLV---HND---IITALCFSP--NRSFQKIKLDISRTL  259 (380)
Q Consensus       193 ~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~---~~~---~i~~~~~~~--~~~~~~~~~~~~~~~  259 (380)
                      ...+..++|+|||++|++++.++     .|++||+.+++....+.   ...   .+..++|+|  ++.+...      ..
T Consensus       257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~------~~  330 (706)
T 2z3z_A          257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ------SR  330 (706)
T ss_dssp             TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE------EC
T ss_pred             ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE------Ec
Confidence            67799999999999999887775     99999999984443332   121   235688999  8864321      12


Q ss_pred             cccceEEEEcC-CceeeeeeeccccceeE-EEEeecCCEEEEeeCC-C--cEEEEecccceeeeEeecccceEEEeeCcc
Q psy6984         260 QKSNLILYPIN-HGKMETPFFSLFRDVLS-VAFSVDNRQIVSSSRD-K--TIKLWNTLAHCKFTIVDLETKKMVEELRPD  334 (380)
Q Consensus       260 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  334 (380)
                      .++...+|.+. .++....+..+...+.. ++|+|+++.|+.++.+ +  .+++|..         +.++.. ...+   
T Consensus       331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~---------d~~~~~-~~~l---  397 (706)
T 2z3z_A          331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI---------DIKGGK-TKDL---  397 (706)
T ss_dssp             TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE---------ETTCCC-CEES---
T ss_pred             cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE---------EcCCCC-ceec---
Confidence            23445566554 44444555555566766 7999999987765544 3  2444432         122211 1111   


Q ss_pred             cccccCCCCCCceEEEEEecCCCEEEEEeeC----CeEEEEEee
Q psy6984         335 VVSQSTKADPPMCLSLAWSTDGQTLFAGYSD----NTIRVWQVS  374 (380)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d----g~v~iw~~~  374 (380)
                             .+...+..++|||||++|+....+    +.|.+|++.
T Consensus       398 -------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          398 -------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             -------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             -------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence                   122346789999999998876543    569999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.4e-22  Score=176.95  Aligned_cols=270  Identities=11%  Similarity=0.096  Sum_probs=188.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecccCC--CeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCC----c
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTK--DVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGH----S  149 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~----~  149 (380)
                      ++|++++.++.|.+||+.+++.+..+.....  .+..++|+|+++.++ ++..++.|.+||+.+......+..++    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988877653221  478899999998764 55667899999987765554443332    1


Q ss_pred             CcEEEEEEccCCCCCEEEEEe------------CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAG------------WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNA  217 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~------------~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  217 (380)
                      ..+.+++|+|+++  .++++.            .++.|.+||+.+.+....... ...+..++|+|+|++++++  ++.|
T Consensus        82 ~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSE
T ss_pred             ccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeE
Confidence            2456789999865  455553            579999999988776655543 3457788999999988887  6889


Q ss_pred             EEEECCCCcEEEEEEecCceEEEEeecCcccceeeee--------eeeeccc----------cceEEEEcCCceee-eee
Q psy6984         218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD--------ISRTLQK----------SNLILYPINHGKME-TPF  278 (380)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~~-~~~  278 (380)
                      .+||+.+++....+........+.|+|++........        .......          ..+.+|+..+++.. ..+
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  236 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence            9999999987766654332223467777654321110        0000000          14678888877654 223


Q ss_pred             eccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCE
Q psy6984         279 FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQT  358 (380)
Q Consensus       279 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  358 (380)
                      ..+...+.+++|+|++++++++  ++.|++||...+.....+..                     ...+.+++|+|||++
T Consensus       237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dg~~  293 (337)
T 1pby_B          237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------------------PHSYYSVNVSTDGST  293 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------------------SSCCCEEEECTTSCE
T ss_pred             CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---------------------CCceeeEEECCCCCE
Confidence            3344567789999999999987  78999998754433221110                     112457899999999


Q ss_pred             EEEEeeCCeEEEEEee
Q psy6984         359 LFAGYSDNTIRVWQVS  374 (380)
Q Consensus       359 l~~g~~dg~v~iw~~~  374 (380)
                      |++++.++.|++||+.
T Consensus       294 l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          294 VWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEESBSSEEEEEETT
T ss_pred             EEEEcCCCcEEEEECc
Confidence            9988899999999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.4e-22  Score=175.29  Aligned_cols=283  Identities=11%  Similarity=0.091  Sum_probs=189.2

Q ss_pred             EEccCCCE-EEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCcce-EEEeeCC
Q psy6984          71 VLSSDGNY-ALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCK-FTIVEDG  147 (380)
Q Consensus        71 ~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~~~~-~~~~~~~  147 (380)
                      .|.+++++ +++.+.++.|.+||+.+++....+..+...+ .++|+|+++++++++. ++.|.+||..+... ..... .
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~   81 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-E   81 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-E
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-c
Confidence            45555555 6778889999999999999888877666667 9999999997776665 88999999876654 33332 3


Q ss_pred             CcCcEEEEEEccCCCCCEEEEEeCC-C--eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCCc-EEEEEC
Q psy6984         148 HSDWVSCVRFSPNHQNPIIVSAGWD-R--MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDMN-AMLWDL  222 (380)
Q Consensus       148 ~~~~v~~~~~~~~~~~~~l~s~~~d-~--~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~-i~i~d~  222 (380)
                      +.....+++|+|+++  +++++..+ +  .|++||+.+.+.......+ ..+..++|+|+|++++ +...++. +.+|++
T Consensus        82 ~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           82 GQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             CSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            344444489999865  45544444 3  8999999988776655543 4568999999998555 4455688 999998


Q ss_pred             CCCcEE-----EEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee---eeeeeccccceeEEEEeecC
Q psy6984         223 NDGKHL-----HTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM---ETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       223 ~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~  294 (380)
                      .....+     ..+.....+..++|+|++.+..+.     ....+.+.+|+...++.   ...+. ....+..++|+|+|
T Consensus       159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-----~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg  232 (331)
T 3u4y_A          159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-----NLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDG  232 (331)
T ss_dssp             CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-----ETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTS
T ss_pred             CCCCcEeecCCccccCCCCccceEECCCCCEEEEE-----eCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCC
Confidence            754332     222334567899999998753222     22356788999887775   33332 34567789999999


Q ss_pred             CEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEE
Q psy6984         295 RQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQ  372 (380)
Q Consensus       295 ~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~  372 (380)
                      ++|+.++ .++.|.+||..++....+.         .........  .........++|+|||++|++++ .++.|.+|+
T Consensus       233 ~~l~v~~~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          233 STVYVLTESTVDVFNFNQLSGTLSFVK---------SFGHGLLID--PRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             SEEEEECSSEEEEEEEETTTTEEEEEE---------EEECCCCCC--CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CEEEEEEcCCCEEEEEECCCCceeeec---------ccccccccC--CCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            9766554 5788999987654332111         110000000  00001114589999999987655 567999999


Q ss_pred             eee
Q psy6984         373 VSV  375 (380)
Q Consensus       373 ~~~  375 (380)
                      +..
T Consensus       302 ~~~  304 (331)
T 3u4y_A          302 ISG  304 (331)
T ss_dssp             TTS
T ss_pred             ecC
Confidence            853

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=6.6e-24  Score=204.77  Aligned_cols=287  Identities=14%  Similarity=0.078  Sum_probs=193.8

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCC---CeEEEEEeCCCCEEEEEeCC---------CcEEEEe
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK---DVLSVAFSVDNRQIVSSSRD---------KTIKLWN  134 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~s~~~d---------~~v~iwd  134 (380)
                      +..++|+|||+++++ +.||.|++||+.+++....+..|..   .|.+++|+|||+++++++.+         +.+.+||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            567899999997776 7899999999999988877777664   48999999999999999875         6788999


Q ss_pred             CCCcceEEEe-eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccc------------------
Q psy6984         135 TLAHCKFTIV-EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGY------------------  195 (380)
Q Consensus       135 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~------------------  195 (380)
                      +.++...... ...+...+..++|+|+++.  |+.++. +.|++||+.+++.......+...                  
T Consensus        98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~--la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQ--LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTC--EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             CCCCceEeccCCccccccccccEECCCCCE--EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            8766542221 1234445788999999864  555553 79999999887655444433322                  


Q ss_pred             eEEEEEcCCCCEEEEEcCCC----------------------------------cEEEEECCCCcEEEEEEe-------c
Q psy6984         196 LNTVTVSPDGSLCASGGKDM----------------------------------NAMLWDLNDGKHLHTLVH-------N  234 (380)
Q Consensus       196 i~~~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~~~~~~-------~  234 (380)
                      +.+++|+|||++|++++.|+                                  .|++||+.+++....+..       .
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence            27899999999999887553                                  799999988875444432       4


Q ss_pred             CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc-cce----eEEEEeecCCEEEE--eeCCC---
Q psy6984         235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF-RDV----LSVAFSVDNRQIVS--SSRDK---  304 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v----~~~~~s~~~~~l~s--~~~dg---  304 (380)
                      ..+..++|+|++.+.....  .+......+++|+..+++....+..+. ..+    ..++|+|||+.|+.  +..|+   
T Consensus       255 ~~~~~~~~SpDg~~l~~~~--~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  332 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWL--NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEE--ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             ceeEEEEEeCCCeEEEEEE--cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence            5688999999987542221  112234567889988877554433322 222    37899999997775  45677   


Q ss_pred             -c--EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceE-EEEEecCCCEEEEEeeC---CeEEEEEeeee
Q psy6984         305 -T--IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCL-SLAWSTDGQTLFAGYSD---NTIRVWQVSVT  376 (380)
Q Consensus       305 -~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~g~~d---g~v~iw~~~~~  376 (380)
                       .  |.+|+...+..        ......+         ......+. .++|||||+.|+..+.+   +.+++|++...
T Consensus       333 ~~~~l~~~d~~~~~~--------~~~~~~l---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          333 KFYHITVSSSQPNSS--------NDNIQSI---------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             CEEEEEEECSSCCSS--------SCCCCBS---------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             ceeEEEEEeccCCCC--------ccceeEe---------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence             4  44554211110        0000000         00111233 36899999999765544   78999998643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=3.7e-23  Score=177.05  Aligned_cols=257  Identities=12%  Similarity=0.057  Sum_probs=175.7

Q ss_pred             EEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-cceEEEeeCCCcCcEEEEEEcc
Q psy6984          81 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-HCKFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~  159 (380)
                      .++.|+.|++||+.+++.. .+..|...+.+++|+|+++++++++ ++.|.+||+.+ ..........+...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            3567899999999988766 4556888999999999999999987 78999999877 5544333322346688899999


Q ss_pred             CCCCCEEEEEe--CCCeEEEE--eCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEEC--CCCcEEEEEE
Q psy6984         160 NHQNPIIVSAG--WDRMVKVW--NLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDL--NDGKHLHTLV  232 (380)
Q Consensus       160 ~~~~~~l~s~~--~d~~v~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~~~~~~~~~  232 (380)
                      +++  .|++++  .++..++|  ++.+.... .... ...+..++|+|++++++ +++.++.+.+|++  ..++......
T Consensus        95 dg~--~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  170 (297)
T 2ojh_A           95 DGA--LYAISDKVEFGKSAIYLLPSTGGTPR-LMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH  170 (297)
T ss_dssp             TSS--EEEEEECTTTSSCEEEEEETTCCCCE-ECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             CCC--EEEEEEeCCCCcceEEEEECCCCceE-Eeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence            865  566666  33445554  55544432 2222 33488899999999877 7788998888885  4455544445


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC-CceeeeeeeccccceeEEEEeecCCEEEEeeCC--------
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD--------  303 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------  303 (380)
                      +...+..++|+|++.......     ..+....+|.+. .+.....+..+...+..++|+|++++|++++.+        
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNS-----SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEE-----CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred             CCCccccceECCCCCEEEEEe-----cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence            677899999999987533221     123456666654 333344455556678899999999999988766        


Q ss_pred             ---CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC
Q psy6984         304 ---KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN  366 (380)
Q Consensus       304 ---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg  366 (380)
                         +.|++|+...+....+..         .         ..+...+..++|+|||+.|++++.+.
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~---------~---------~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFD---------L---------FGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEE---------E---------EESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             cCceEEEEEecCCCCceeeec---------c---------CCCCcccccceECCCCCEEEEEEecc
Confidence               468889865433221111         0         01223355688999999998877654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=4.2e-23  Score=176.68  Aligned_cols=259  Identities=14%  Similarity=0.084  Sum_probs=184.0

Q ss_pred             EeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC-Cceeeeeccc-CCCeEE
Q psy6984          34 SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA-GKTTRRFEDH-TKDVLS  111 (380)
Q Consensus        34 t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~h-~~~v~~  111 (380)
                      +.+.|++|++||+....      ...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+
T Consensus        17 ~~~~~~~i~~~d~~~~~------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRK------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTTTE------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCCCc------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence            45678999999986432      223456788899999999999999987 78999999998 8777666555 367889


Q ss_pred             EEEeCCCCEEEEEe--CCCcEEEEeC--CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC--Ccee
Q psy6984         112 VAFSVDNRQIVSSS--RDKTIKLWNT--LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT--NCKL  185 (380)
Q Consensus       112 ~~~~~~~~~~~s~~--~d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~  185 (380)
                      ++|+|+++.+++++  .++..++|..  ..... ..+.  +...+.+++|+|+++. ++++++.++.+++|++.  +.+ 
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~-  164 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT--KNLPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGV-  164 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC--SSSSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCC-
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee--cCCCccceEECCCCCE-EEEEECCCCceEEEEEECCCCc-
Confidence            99999999999998  4455666654  33322 2222  2234888999998753 44478889999999863  333 


Q ss_pred             eEeeeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECC-CCcEEEEE-EecCceEEEEeecCcccceeeeeeeee----
Q psy6984         186 KINHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLN-DGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRT----  258 (380)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~----  258 (380)
                      ......+...+.++.|+|+|++++.++ .++.+.+|++. .+..+..+ .+...+..++|+|++.+..........    
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            334556677899999999999877665 58899999875 33334444 355678889999998764433211000    


Q ss_pred             -ccccceEEEEcCCceee--eeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         259 -LQKSNLILYPINHGKME--TPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       259 -~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                       .....+++|+...++..  ..+..+...+.+++|+|++++|++++.|.
T Consensus       245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence             02256888998877543  23345667888999999999999887653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=3.3e-22  Score=192.40  Aligned_cols=284  Identities=11%  Similarity=0.094  Sum_probs=195.7

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC-
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA-   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-   95 (380)
                      ..|.+++|+|+ ..++++ . ++.+++||+....      ...+..+...+..++|+|||++|+.+ .|+.|++||+.+ 
T Consensus        82 ~~v~~~~~spd-~~~~~~-~-~~~i~~~d~~~~~------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~  151 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-T-QGGLVGFDMLARK------VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKL  151 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-E-TTEEEEEETTTTE------EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCT
T ss_pred             cCceeEEECCC-CeEEEE-E-CCEEEEEECCCCc------eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcc
Confidence            56999999998 444444 3 5999999986432      12234455668889999999999985 679999999988 


Q ss_pred             ----CceeeeecccCCC--------------eEEEEEeCCCCEEEEEe--------------------------------
Q psy6984          96 ----GKTTRRFEDHTKD--------------VLSVAFSVDNRQIVSSS--------------------------------  125 (380)
Q Consensus        96 ----~~~~~~~~~h~~~--------------v~~~~~~~~~~~~~s~~--------------------------------  125 (380)
                          ++.......+...              +.+++|+|||++|++++                                
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          152 GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence                7766544444333              47899999999999987                                


Q ss_pred             -CCCcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEEEEeCCC-----eEEEEeCCCc-eeeEeee-CCcc--
Q psy6984         126 -RDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDR-----MVKVWNLTNC-KLKINHS-GHTG--  194 (380)
Q Consensus       126 -~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~-~~~~~~~-~~~~--  194 (380)
                       .+..|.+||+.++....... ..+...+.+++|+|+++  .|++++.++     .|++||+.++ ....... .+..  
T Consensus       232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN--ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS--EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC--EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence             45679999987665433322 24667799999999875  566665565     8999999887 4332221 1222  


Q ss_pred             -ceEEEEEcC--CCCEEEEEcCCCcEEEEECC-CCcEEEEEE-ecCceEE-EEeecCcccceeeeeeeeeccccceEEEE
Q psy6984         195 -YLNTVTVSP--DGSLCASGGKDMNAMLWDLN-DGKHLHTLV-HNDIITA-LCFSPNRSFQKIKLDISRTLQKSNLILYP  268 (380)
Q Consensus       195 -~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (380)
                       .+..+.|+|  +|+++++++.|+.+++|++. ++..+..+. +...+.. ++|+|++......... .......++.++
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~d  388 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-ASPLERHFYCID  388 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-SCTTCBEEEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-CCCceEEEEEEE
Confidence             246789999  99999999999999999875 555555553 3444655 7999988653322110 000012455666


Q ss_pred             cCCceeeeeeeccccceeEEEEeecCCEEEEeeCC----CcEEEEecccce
Q psy6984         269 INHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHC  315 (380)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~~  315 (380)
                      ..+++..  ...+...+.+++|+|||++++..+.+    +.|++|+...+.
T Consensus       389 ~~~~~~~--~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          389 IKGGKTK--DLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             TTCCCCE--ESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             cCCCCce--eccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            6555422  22345668899999999998876443    569999986654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.4e-21  Score=171.78  Aligned_cols=278  Identities=12%  Similarity=0.150  Sum_probs=177.4

Q ss_pred             CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC---CCcEEEEECCCCce--eeeecccCCCeEE
Q psy6984          37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW---DKTLRLWDLAAGKT--TRRFEDHTKDVLS  111 (380)
Q Consensus        37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~--~~~~~~h~~~v~~  111 (380)
                      .++.+.+|.++......  .......+...+..++|+|||+ |++++.   ++.|++|++.+++.  +..+..+...+..
T Consensus        14 ~~~~i~v~~~d~~tg~~--~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTL--TNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SCCEEEEEEEETTTTEE--EEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCCEEEEEEcCCCCeE--EEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            46678899886532211  1112233445677899999999 655554   68999999977653  3344456778889


Q ss_pred             EEEeCCCCEEEEEe-CCCcEEEEeCCCcceE---EEeeC-C-------CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEe
Q psy6984         112 VAFSVDNRQIVSSS-RDKTIKLWNTLAHCKF---TIVED-G-------HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN  179 (380)
Q Consensus       112 ~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~---~~~~~-~-------~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd  179 (380)
                      ++|+|||+++++++ .++.+.+|++......   ..... +       ....+.+++|+|+++  ++++...++.|++|+
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~  168 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYN  168 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEE
Confidence            99999999988887 7889999997532111   11111 1       123488899999876  677777789999999


Q ss_pred             CC-CceeeE--eeeCC-ccceEEEEEcCCCCEEEE-EcCCCcEEEEECCC--CcEEEEEEecCceEEEEeecCcccceee
Q psy6984         180 LT-NCKLKI--NHSGH-TGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLND--GKHLHTLVHNDIITALCFSPNRSFQKIK  252 (380)
Q Consensus       180 ~~-~~~~~~--~~~~~-~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (380)
                      +. ++++..  ....+ ...+..++|+|+|+++++ ...++.+.+|++..  ++.. ...      .+...+..      
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~-~~~------~~~~~~~~------  235 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT-QLG------IVKTIPAD------  235 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE-EEE------EEESSCTT------
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE-Eee------eeeecCCC------
Confidence            98 443322  11222 235778999999996554 66789999998764  3211 100      00000000      


Q ss_pred             eeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEE-EEeeCCCcEEEEecccceeeeEeecccceEEEee
Q psy6984         253 LDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEEL  331 (380)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  331 (380)
                                                ......+..++|+|||++| ++...++.|.+|++.......        .+..+
T Consensus       236 --------------------------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~--------~~~~~  281 (347)
T 3hfq_A          236 --------------------------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT--------LIQQI  281 (347)
T ss_dssp             --------------------------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE--------EEEEE
T ss_pred             --------------------------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE--------EeEEE
Confidence                                      0001235679999999987 555668999999874321111        11111


Q ss_pred             CcccccccCCCCCCceEEEEEecCCCEEEEEee-CCeEEEEEeee
Q psy6984         332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS-DNTIRVWQVSV  375 (380)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~-dg~v~iw~~~~  375 (380)
                      .         .+...+..++|+|||++|++++. ++.|.+|++..
T Consensus       282 ~---------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          282 S---------TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             E---------CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             e---------cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            1         11223457999999999888775 58999997753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=1e-22  Score=191.56  Aligned_cols=271  Identities=15%  Similarity=0.097  Sum_probs=189.9

Q ss_pred             CcceEEEEEccCCCEEEEEeC-CCcEEEEECCCCceeeeecccC-CCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCC-
Q psy6984          64 SHFISDIVLSSDGNYALSGSW-DKTLRLWDLAAGKTTRRFEDHT-KDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLA-  137 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~s~~~---d~~v~iwd~~~-  137 (380)
                      ...|++++|+|||++||.++. ||.+.||++.+++..+ +..|. ..+..++|+|| +.+++++.   +...++|.... 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            446999999999999999887 9999999986665544 44444 68999999999 77777765   45567765432 


Q ss_pred             -cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC--
Q psy6984         138 -HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD--  214 (380)
Q Consensus       138 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--  214 (380)
                       ......+..  .......+|+|+++..+++++..+ .+.+||+.+++.......+.   .+++|+|||+++++++.+  
T Consensus        99 ~~g~~~~l~~--~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQRLEA--VKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             STTCCEECTT--SCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred             CCCccccccC--CCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence             212122221  223446788898876455555544 45599998876554433222   788999999999988777  


Q ss_pred             --CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEE---
Q psy6984         215 --MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA---  289 (380)
Q Consensus       215 --~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---  289 (380)
                        ..|++||+.+++......+...+..++|+|+++....    ........+++|+..+++.. .+..+...+..++   
T Consensus       173 ~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~----~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG----LETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             TEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE----EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             CCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE----ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence              7899999988876654456777899999999976441    11111236888998888776 5555555566666   


Q ss_pred             -----EeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee
Q psy6984         290 -----FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS  364 (380)
Q Consensus       290 -----~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~  364 (380)
                           |+|||..+++++.|+++++|++  +...           .            .....+.+++|+ ||+++++++.
T Consensus       248 ~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~-----------~------------~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARREGRSAVFID--GERV-----------E------------APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEET--TEEE-----------C------------CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             ccceeEcCCCcEEEEEEcCCcEEEEEE--CCee-----------c------------cCCCceEEEEec-CCEEEEEEcC
Confidence                 9999988999999999999986  2111           0            001246688999 9999998887


Q ss_pred             CCe-EEEEEe
Q psy6984         365 DNT-IRVWQV  373 (380)
Q Consensus       365 dg~-v~iw~~  373 (380)
                      +.. -++|.+
T Consensus       302 ~~~p~~l~~~  311 (582)
T 3o4h_A          302 LSTPPRIVSL  311 (582)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCCCeEEEE
Confidence            754 344433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=1.5e-20  Score=165.23  Aligned_cols=272  Identities=10%  Similarity=0.085  Sum_probs=198.6

Q ss_pred             ccceEEEEeCCCCCCeEEEeeC-------CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCc
Q psy6984          16 NGWVTQIATNPKFPDTILSCSR-------DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKT   87 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~-------dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~   87 (380)
                      ...+..++++|+ ++++++++.       ++.|.+||........     .+. ....+..++++|+|++++.+ ..++.
T Consensus        40 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~-----~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~  112 (353)
T 3vgz_A           40 GKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ-----AIH-NDLKPFGATINNTTQTLWFGNTVNSA  112 (353)
T ss_dssp             ESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEE-----EEE-ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred             ccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE-----EEe-cCCCcceEEECCCCCEEEEEecCCCE
Confidence            456888999997 566666653       5789999976543211     111 12346789999999966554 55799


Q ss_pred             EEEEECCCCceeeeecccCCC---------eEEEEEeCCCCEEEEEe--CCCcEEEEeCCCcceEEEeeCCCcCcEEEEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKD---------VLSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVR  156 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  156 (380)
                      |.+||..+++....+..+...         +.+++|+|+++.++++.  .++.|.+||..+......+. .+...+.+++
T Consensus       113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~  191 (353)
T 3vgz_A          113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLA  191 (353)
T ss_dssp             EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCE
T ss_pred             EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEE
Confidence            999999999888777654322         68899999999887766  47889999987765554443 2344467899


Q ss_pred             EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC----CccceEEEEEcCCCCEEEEEcC-CCcEEEEECCCCcEEEEE
Q psy6984         157 FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG----HTGYLNTVTVSPDGSLCASGGK-DMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       157 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~  231 (380)
                      |+|+++  .+++++.++.|.+||+.+.+.......    +...+..++++|+|+++++++. ++.|.+||..+++.+..+
T Consensus       192 ~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  269 (353)
T 3vgz_A          192 LDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV  269 (353)
T ss_dssp             EETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred             ECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            999765  577778899999999998877655443    4556888999999997666554 599999999999988777


Q ss_pred             EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCC
Q psy6984         232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDK  304 (380)
Q Consensus       232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  304 (380)
                      ..... ..++|+|++.+..+.     ...++.+.+|+..+++....+. ....+.+++|+|+|++|+.+..++
T Consensus       270 ~~~~~-~~~~~s~dg~~l~v~-----~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          270 AAPES-LAVLFNPARNEAYVT-----HRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             ECSSC-CCEEEETTTTEEEEE-----ETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred             EcCCC-ceEEECCCCCEEEEE-----ECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence            65543 568899988643221     2245778999998887665443 334678999999999777666553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=5e-21  Score=168.05  Aligned_cols=271  Identities=14%  Similarity=0.109  Sum_probs=176.4

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccC-CCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCC
Q psy6984          70 IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT-KDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDG  147 (380)
Q Consensus        70 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~  147 (380)
                      ++++++++++++++.++.|++||+.+++....+..+. ..+..++|+|+++.++ +...++.|.+||+.+......+...
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            4567888899999999999999999998887776443 2577899999998665 5557899999998776555444333


Q ss_pred             C-----cCcEEEEEEccCCCCCEEEEEeCC------------CeEEEEeCCCcee---eEeeeCCccceEEEEEcCCCCE
Q psy6984         148 H-----SDWVSCVRFSPNHQNPIIVSAGWD------------RMVKVWNLTNCKL---KINHSGHTGYLNTVTVSPDGSL  207 (380)
Q Consensus       148 ~-----~~~v~~~~~~~~~~~~~l~s~~~d------------~~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~  207 (380)
                      +     ...+.+++|+|+++  .+++++.+            +.|.+||+.+.+.   ..... +...+.+++|+|+|+ 
T Consensus        85 ~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred             cccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence            2     22356789999865  56666544            8999999987432   22222 334588899999999 


Q ss_pred             EEEEcCCCcEEEEECCCCcEEEEEEecC-------------------------ceEEEEeecCcccceeeeeeeeecccc
Q psy6984         208 CASGGKDMNAMLWDLNDGKHLHTLVHND-------------------------IITALCFSPNRSFQKIKLDISRTLQKS  262 (380)
Q Consensus       208 l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~  262 (380)
                      +++++.  .|.+||+.+++.+..+....                         ....+++++++........     ...
T Consensus       161 l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~  233 (349)
T 1jmx_B          161 LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD-----LLY  233 (349)
T ss_dssp             EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE-----EEE
T ss_pred             EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc-----cce
Confidence            555544  49999999988776654332                         2223333332211000000     001


Q ss_pred             ceEEEEcCCceeee-eeeccccceeEEEEee-cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccC
Q psy6984         263 NLILYPINHGKMET-PFFSLFRDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQST  340 (380)
Q Consensus       263 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (380)
                      .+..++...++... .+......+..++|+| ++++++++  ++.|++||+.++.....+..                  
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------------------  293 (349)
T 1jmx_B          234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------------------  293 (349)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------------------
T ss_pred             eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------------------
Confidence            11123333333221 1122334577899999 99999988  88999998755433222110                  


Q ss_pred             CCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         341 KADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       341 ~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                         ...+..++|+|||++|++++.++.|++||+.
T Consensus       294 ---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          294 ---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             ---SSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             ---CCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence               1123478999999999888889999999975

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4.9e-21  Score=167.14  Aligned_cols=266  Identities=14%  Similarity=0.130  Sum_probs=189.2

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCccccccccc-CCCc-ceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeecc-c
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-GHSH-FISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFED-H  105 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~-h  105 (380)
                      +++++++.+++|++||+......     ..+. ++.. .+..++|+|++++++ ++..++.|.+||+.+++.+..+.. +
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD-----KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE-----EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE-----EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence            47899999999999997643211     1121 2222 367899999998765 555678999999999888776643 1


Q ss_pred             ----CCCeEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984         106 ----TKDVLSVAFSVDNRQIVSSS------------RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus       106 ----~~~v~~~~~~~~~~~~~s~~------------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                          ...+.+++|+|+++.++++.            .++.|.+||..+......+..  ...+.+++|+|+++.  ++++
T Consensus        77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~--l~~~  152 (337)
T 1pby_B           77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSK--LYGL  152 (337)
T ss_dssp             TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSC--EEEE
T ss_pred             cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCE--EEEe
Confidence                22567899999999998886            679999999876655444432  234677899998753  4444


Q ss_pred             eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCC-C-----------------------cEEEEECCCC
Q psy6984         170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKD-M-----------------------NAMLWDLNDG  225 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~-----------------------~i~i~d~~~~  225 (380)
                        ++.|.+||+.+.+.......+.. ...+.++|+++.++..+.. +                       .|.+||+.++
T Consensus       153 --~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          153 --GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             --SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             --CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence              68999999998877655543321 1123678998876554433 2                       4689999988


Q ss_pred             cEEEEE---EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         226 KHLHTL---VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       226 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      +.. ..   .+...+..++|+|++.+....        ++.+.+|+..+++....+. ....+.+++|+|++++|++++.
T Consensus       230 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~  299 (337)
T 1pby_B          230 EMA-MREVRIMDVFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGA  299 (337)
T ss_dssp             CEE-EEEEEECSSCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESB
T ss_pred             Cce-EeecCCCCCceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcC
Confidence            765 22   234567789999998764332        3678899998877654433 3346789999999999999889


Q ss_pred             CCcEEEEecccceee
Q psy6984         303 DKTIKLWNTLAHCKF  317 (380)
Q Consensus       303 dg~v~iw~~~~~~~~  317 (380)
                      ++.|++||+.++..+
T Consensus       300 ~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          300 LGDLAAYDAETLEKK  314 (337)
T ss_dssp             SSEEEEEETTTCCEE
T ss_pred             CCcEEEEECcCCcEE
Confidence            999999987655443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=3.8e-22  Score=192.35  Aligned_cols=323  Identities=12%  Similarity=0.090  Sum_probs=205.7

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc---ceEEEEEccCCCEEEEEeC---------CCcE
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH---FISDIVLSSDGNYALSGSW---------DKTL   88 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~---------d~~i   88 (380)
                      ++.|+|+ +. ++..+.|++|++|++......     ..+.+|..   .+.+++|||||++|++++.         ++.|
T Consensus        20 ~~~~s~d-g~-~~~~~~d~~i~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i   92 (719)
T 1z68_A           20 FPNWISG-QE-YLHQSADNNIVLYNIETGQSY-----TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATY   92 (719)
T ss_dssp             CCEESSS-SE-EEEECTTSCEEEEESSSCCEE-----EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccEECCC-Ce-EEEEcCCCCEEEEEcCCCcEE-----EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEE
Confidence            6789987 44 444556999999998754321     11223322   3889999999999998876         7899


Q ss_pred             EEEECCCCcee--eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE--------------
Q psy6984          89 RLWDLAAGKTT--RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV--------------  152 (380)
Q Consensus        89 ~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v--------------  152 (380)
                      ++||+.+++.+  ..+   ...+..++|+|||+.|+.+. ++.|++|++.++........++...+              
T Consensus        93 ~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~  168 (719)
T 1z68_A           93 YIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEML  168 (719)
T ss_dssp             EEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred             EEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecc
Confidence            99999988763  222   24688899999999999886 77999999876554433333333322              


Q ss_pred             ---EEEEEccCCCCCEEEEEeCCC----------------------------------eEEEEeCCCceee----E----
Q psy6984         153 ---SCVRFSPNHQNPIIVSAGWDR----------------------------------MVKVWNLTNCKLK----I----  187 (380)
Q Consensus       153 ---~~~~~~~~~~~~~l~s~~~d~----------------------------------~v~iwd~~~~~~~----~----  187 (380)
                         .+++|+|+++  .|++++.|.                                  .|++||+.+.+..    .    
T Consensus       169 ~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  246 (719)
T 1z68_A          169 ATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA  246 (719)
T ss_dssp             CSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred             cCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence               4799999876  566655442                                  7889999886542    1    


Q ss_pred             eeeCCccceEEEEEcCCCCEEEEEcCC----CcEEEEE----CCCCcEEEEE-----EecCceE-----EEEeecCcccc
Q psy6984         188 NHSGHTGYLNTVTVSPDGSLCASGGKD----MNAMLWD----LNDGKHLHTL-----VHNDIIT-----ALCFSPNRSFQ  249 (380)
Q Consensus       188 ~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~-----~~~~~i~-----~~~~~~~~~~~  249 (380)
                      .+.+|...+..++|+||++++++....    ..|.+||    ..+++.....     .+...+.     .+.|+|++...
T Consensus       247 ~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  326 (719)
T 1z68_A          247 MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY  326 (719)
T ss_dssp             HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred             cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence            123577789999999998877764332    3488899    7766543332     2334444     77899998743


Q ss_pred             eeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC-----CcEEEEecccceeeeEeeccc
Q psy6984         250 KIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFTIVDLET  324 (380)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~  324 (380)
                      .+..  ........+++++...++ ...+......+..+.++ +++.++..+.+     +.+++|.+..         .+
T Consensus       327 ~~~~--~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~---------~~  393 (719)
T 1z68_A          327 YKIF--SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI---------GS  393 (719)
T ss_dssp             EEEE--ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC---------SS
T ss_pred             EEEE--EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC---------CC
Confidence            3211  111123346667765554 23344444557777777 88877766654     8899997522         11


Q ss_pred             ce-EEEeeCcccccccCCCCCCceEEEEEecCCCEEEE-EeeC--CeEEEEEee
Q psy6984         325 KK-MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA-GYSD--NTIRVWQVS  374 (380)
Q Consensus       325 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-g~~d--g~v~iw~~~  374 (380)
                      .. ....+...     ...+...+..+.|+|||++++. ++..  ..+.+|++.
T Consensus       394 g~~~~~~l~~~-----~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~  442 (719)
T 1z68_A          394 YPPSKKCVTCH-----LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR  442 (719)
T ss_dssp             SSCCEEESSTT-----TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred             CCCCceeccCc-----cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence            10 00111100     0112334567899999998774 4333  357777763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=6.7e-21  Score=171.92  Aligned_cols=243  Identities=11%  Similarity=0.108  Sum_probs=166.6

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCC----------ceee-----eecccCCCeEEEEEeCCCCEEE----EEeC
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAG----------KTTR-----RFEDHTKDVLSVAFSVDNRQIV----SSSR  126 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~----------~~~~-----~~~~h~~~v~~~~~~~~~~~~~----s~~~  126 (380)
                      .++.+++++++.++++++.|+ +++|+...-          ....     ....+...|.+++|+|++++|+    +++.
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~  116 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY  116 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence            478899999999999999998 889875310          0111     1123556799999999999999    7889


Q ss_pred             CCcEEEEeCCCc--------ce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccce
Q psy6984         127 DKTIKLWNTLAH--------CK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL  196 (380)
Q Consensus       127 d~~v~iwd~~~~--------~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i  196 (380)
                      |+.|++||+...        ..  ......+|...|.+++|+|+.. .+|++++.|++|++||+++........+|...+
T Consensus       117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence            999999997543        11  1233456889999999999743 489999999999999999887666667788999


Q ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-e-------cCceEEEEeecCcccceeeeeeeee-ccccceEEE
Q psy6984         197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-H-------NDIITALCFSPNRSFQKIKLDISRT-LQKSNLILY  267 (380)
Q Consensus       197 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-------~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  267 (380)
                      .+++|+|+|++|++|+.|+.|++||++ ++....+. +       ...+.+++|+++..+.......... .....+.+|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999998 55444442 1       1278899999876554322111000 112346777


Q ss_pred             EcCCceee-----eeee-------ccccceeEEEEeecCCEEEEeeC-CCcEEEEec
Q psy6984         268 PINHGKME-----TPFF-------SLFRDVLSVAFSVDNRQIVSSSR-DKTIKLWNT  311 (380)
Q Consensus       268 ~~~~~~~~-----~~~~-------~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~  311 (380)
                      ++...+..     ..+.       ....+...+.+-++.++++.++. ...|.+...
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          275 LLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             ECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             EeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence            77543211     1111       11112233444477777665554 455666653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=3.9e-20  Score=163.39  Aligned_cols=279  Identities=11%  Similarity=0.131  Sum_probs=176.0

Q ss_pred             eEEEe----eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC----CcEEEEECCC--Cce--
Q psy6984          31 TILSC----SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD----KTLRLWDLAA--GKT--   98 (380)
Q Consensus        31 ~l~t~----~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~~~--~~~--   98 (380)
                      +++.|    +.++.|.+|+++........ ....  +...+..++|+|||++|++++.+    +.|.+|++..  ++.  
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~-~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLP-LSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEE-EEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEE-eecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            44555    34678999988643222111 1112  55667789999999999999886    7999998865  433  


Q ss_pred             eeeecccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcceE----EE-eeC--------CCcCcEEEEEEccCCCCC
Q psy6984          99 TRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKF----TI-VED--------GHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~----~~-~~~--------~~~~~v~~~~~~~~~~~~  164 (380)
                      +.....+......+++  +++++++++ .++.+.+|++......    .. ...        .+...+.+++|+|+++. 
T Consensus        92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-  168 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-  168 (361)
T ss_dssp             EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-
T ss_pred             eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-
Confidence            2233334556777777  788777766 6789999997542211    11 111        11234688999998753 


Q ss_pred             EEEEEeCCCeEEEEeCCCce-------ee------EeeeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEE
Q psy6984         165 IIVSAGWDRMVKVWNLTNCK-------LK------INHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHT  230 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~-------~~------~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~  230 (380)
                      ++++...++.|++|++....       +.      .....+...+..++|+|+|+++++++ .++.|.+||+.+++....
T Consensus       169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence            44555568899999887533       21      11223345678899999999877666 689999999876532111


Q ss_pred             EEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC--CCcEEE
Q psy6984         231 LVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR--DKTIKL  308 (380)
Q Consensus       231 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~v~i  308 (380)
                      ..       +...+                                   .+......++|+|||++|+++..  ++.|.+
T Consensus       249 ~~-------~~~~~-----------------------------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v  286 (361)
T 3scy_A          249 QT-------VAADT-----------------------------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAI  286 (361)
T ss_dssp             EE-------EESCS-----------------------------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred             EE-------EecCC-----------------------------------CCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence            00       00000                                   01122457899999999876665  489999


Q ss_pred             Eeccc-ceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEEeee
Q psy6984         309 WNTLA-HCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQVSV  375 (380)
Q Consensus       309 w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~~~~  375 (380)
                      |++.. ..+..        .+.....          ...+..++|+|||++|++++ .++.|.+|++..
T Consensus       287 ~~~~~~~g~~~--------~~~~~~~----------g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          287 FKVDETNGTLT--------KVGYQLT----------GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             EEECTTTCCEE--------EEEEEEC----------SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             EEEcCCCCcEE--------EeeEecC----------CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            98641 11111        1111110          12345789999999998877 679999988763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=6.3e-20  Score=160.51  Aligned_cols=271  Identities=13%  Similarity=0.182  Sum_probs=175.9

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCC-CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC-CCcEEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRD-NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW-DKTLRLW   91 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~d-g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~vw   91 (380)
                      .|...+..++++|+ +++|++++.+ +.|++|+++....... ....+..+. .+..++|+|++++|++++. ++.|.+|
T Consensus        35 ~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           35 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALT-FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEE-EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCcee-eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence            46778999999998 6777777765 9999999873221111 112223333 6789999999998877765 7889999


Q ss_pred             ECCC---CceeeeecccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCC-cceEE----EeeCCCcCcEEEEEEccCCC
Q psy6984          92 DLAA---GKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLA-HCKFT----IVEDGHSDWVSCVRFSPNHQ  162 (380)
Q Consensus        92 d~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~  162 (380)
                      |+.+   .+....+.. ...+.+++|+|+++.+++++ .++.|.+||+.. +....    .........+.+++|+|+++
T Consensus       112 d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~  190 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQ  190 (343)
T ss_dssp             EEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSS
T ss_pred             ECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCC
Confidence            9943   333444433 34588899999999888877 899999999875 32221    12222334678899999865


Q ss_pred             CCEEEEEeCCCeEEEEeCCC--ceee--Eeee----CC--ccceEEEEEcCCCCEEE-EEcCCCcEEEEECC--CC--cE
Q psy6984         163 NPIIVSAGWDRMVKVWNLTN--CKLK--INHS----GH--TGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLN--DG--KH  227 (380)
Q Consensus       163 ~~~l~s~~~d~~v~iwd~~~--~~~~--~~~~----~~--~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~--~~--~~  227 (380)
                      . +++++..++.|++|++..  ++..  ....    ++  ...+..++|+|+|++++ ++..++.|.+||+.  .+  +.
T Consensus       191 ~-l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~  269 (343)
T 1ri6_A          191 Y-AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  269 (343)
T ss_dssp             E-EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             E-EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence            2 445556889999999953  3321  1111    11  23566899999998776 55579999999998  32  34


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC--Cceeee-eeeccccceeEEEEeecC
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN--HGKMET-PFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~v~~~~~s~~~  294 (380)
                      +..+.....+..++|+|++.+....     ...++.+.+|.++  +++... ..........+++|.|+.
T Consensus       270 ~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          270 EGFQPTETQPRGFNVDHSGKYLIAA-----GQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEECSSSCCCEEECTTSSEEEEE-----CTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred             eeeecCCCccceEEECCCCCEEEEe-----cCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence            4444444558889999988653322     1234667777543  444321 111222334556666554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=6.7e-20  Score=163.42  Aligned_cols=310  Identities=10%  Similarity=0.012  Sum_probs=189.9

Q ss_pred             eEEeEEecCcccceEE-----EEeCCCCCCeEEEeeC-CCe--EEEeecCCCCCCcccccccccCCCcceEEEEEccCCC
Q psy6984           6 LQLRGTLNGHNGWVTQ-----IATNPKFPDTILSCSR-DNT--LIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN   77 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~-----i~~~~~~~~~l~t~~~-dg~--v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   77 (380)
                      ......|..|.+....     ..|+|+ +++|+.++. +|.  |.+|++....     ......++...+..+.|+|||+
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~spdg~   93 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQV-----ATQLTEGRGDNTFGGFLSPDDD   93 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCE-----EEECCCSSCBCSSSCEECTTSS
T ss_pred             CcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCc-----eEEeeeCCCCCccceEEcCCCC
Confidence            3445567777766665     789998 677777776 774  6666654321     1112334544555678999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEE--EeCCCCEEEEE----------------------eCCCcEEEE
Q psy6984          78 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA--FSVDNRQIVSS----------------------SRDKTIKLW  133 (380)
Q Consensus        78 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~~s~----------------------~~d~~v~iw  133 (380)
                      +|+.++.++.|++||+.+++....+..+...+....  ++|++..++..                      ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            999999999999999999887776665555444333  48999988743                      244678899


Q ss_pred             eCCCcceEEEeeCCCcCcEEEEEEcc-CCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCc-cceEEEEEcCCC
Q psy6984         134 NTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHT-GYLNTVTVSPDG  205 (380)
Q Consensus       134 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~  205 (380)
                      |+.++......  .+...+..++|+| +++.  |+....      ...|.++|+...........+. ..+..+.|+|||
T Consensus       174 d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~--l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          174 DLKTGESTVIL--QENQWLGHPIYRPYDDST--VAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             ETTTCCEEEEE--EESSCEEEEEEETTEEEE--EEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred             ECCCCceEEee--cCCccccccEECCCCCCE--EEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence            98776544433  2345688999999 7653  443332      3378888887654433222222 357788999999


Q ss_pred             CEEEEEcC-C----CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec
Q psy6984         206 SLCASGGK-D----MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS  280 (380)
Q Consensus       206 ~~l~~~~~-d----~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (380)
                      +.|+..+. +    ..|++||+.+++......... .....++                                     
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~-------------------------------------  291 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSN-------------------------------------  291 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEEC-------------------------------------
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeec-------------------------------------
Confidence            97765433 2    239999998876432211111 0000000                                     


Q ss_pred             cccceeEEEEeecCCEEEEe---------eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984         281 LFRDVLSVAFSVDNRQIVSS---------SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA  351 (380)
Q Consensus       281 ~~~~v~~~~~s~~~~~l~s~---------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                          ...++|+|||+.|+..         ..+..|++|+...+....+.....       ....   ........+..++
T Consensus       292 ----~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-------~~~~---~~~~~~~~~~~~~  357 (388)
T 3pe7_A          292 ----YDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT-------SWKV---FEGDRQVTHPHPS  357 (388)
T ss_dssp             ----TTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC-------CCCC---BTTBSSTTCCCCE
T ss_pred             ----CCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC-------cccc---cccccccCCCCcc
Confidence                0123689999887753         456689999876543322211100       0000   0000011245678


Q ss_pred             EecCCCEEEEEe-eCCeEEEEEeeeec
Q psy6984         352 WSTDGQTLFAGY-SDNTIRVWQVSVTS  377 (380)
Q Consensus       352 ~s~dg~~l~~g~-~dg~v~iw~~~~~~  377 (380)
                      |||||+.|+..+ .+|...||.+.+..
T Consensus       358 ~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          358 FTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             CCCCCCEEEEEecCCCceeEEEEECCh
Confidence            999999888655 68889999887654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.9e-21  Score=175.50  Aligned_cols=204  Identities=14%  Similarity=0.070  Sum_probs=150.3

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-------cc---cccccccCCCcceEEEEEccCCCEEE----E
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-------YG---VPQKRLKGHSHFISDIVLSSDGNYAL----S   81 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-------~~---~~~~~~~~h~~~v~~~~~~~~~~~l~----s   81 (380)
                      ...++.+++++. ..++++++.|+ +++|+.......       ..   ........+...|++++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            345888889887 56888888887 888875421000       00   00111123556799999999999999    7


Q ss_pred             EeCCCcEEEEECCCC--------ce---eeeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCc
Q psy6984          82 GSWDKTLRLWDLAAG--------KT---TRRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHS  149 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~--------~~---~~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~  149 (380)
                      |+.|+.|+|||+.++        +.   ...+.+|...|.+++|+|+ +..+++++.|++|++||+...... ....+|.
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~  192 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPST  192 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCC
Confidence            889999999998654        11   3455679999999999998 789999999999999998776443 2334678


Q ss_pred             CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-------CccceEEEEEcCCCCEEEE-EcCCC------
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-------HTGYLNTVTVSPDGSLCAS-GGKDM------  215 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~-~~~d~------  215 (380)
                      ..|.+++|+|++.  +|++|+.|+.|++||++ .+.......       |...+.++.|++++.++++ ...||      
T Consensus       193 ~~v~~v~wspdg~--~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~  269 (434)
T 2oit_A          193 VAVTSVCWSPKGK--QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP  269 (434)
T ss_dssp             GCEEEEEECTTSS--CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred             CceeEEEEcCCCC--EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence            8899999999865  68999999999999998 333333322       3347999999998887754 33343      


Q ss_pred             cEEEEECCCC
Q psy6984         216 NAMLWDLNDG  225 (380)
Q Consensus       216 ~i~i~d~~~~  225 (380)
                      .+++|++...
T Consensus       270 ~v~i~~l~~~  279 (434)
T 2oit_A          270 DVVMALLPKK  279 (434)
T ss_dssp             EEEEEECCCT
T ss_pred             ceEEEEeccC
Confidence            3889998764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=2e-19  Score=157.90  Aligned_cols=249  Identities=11%  Similarity=0.106  Sum_probs=162.3

Q ss_pred             cCcccceEEEEeCCCCCCeEEEeeC---CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcE
Q psy6984          13 NGHNGWVTQIATNPKFPDTILSCSR---DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTL   88 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t~~~---dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i   88 (380)
                      ..+...+..++++|+ ++ |++++.   ++.|.+|++.....   .....+..+...+..++|+|||++|++++ .++.|
T Consensus        36 ~~~~~~p~~~a~spd-g~-l~~~~~~~~~~~v~~~~~~~g~~---~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v  110 (347)
T 3hfq_A           36 LAATQNPTYLALSAK-DC-LYSVDKEDDEGGIAAWQIDGQTA---HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTA  110 (347)
T ss_dssp             EEECSCCCCEEECTT-CE-EEEEEEETTEEEEEEEEEETTEE---EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEE
T ss_pred             eeccCCcceEEEccC-Ce-EEEEEecCCCceEEEEEecCCcE---EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEE
Confidence            345567788999997 45 554443   68999999853221   11222334566788999999999998888 67899


Q ss_pred             EEEECCC-Cce--eeeecc---------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE---eeCCCcCcEE
Q psy6984          89 RLWDLAA-GKT--TRRFED---------HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI---VEDGHSDWVS  153 (380)
Q Consensus        89 ~vwd~~~-~~~--~~~~~~---------h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~---~~~~~~~~v~  153 (380)
                      .+|++.. ++.  +..+..         +...+.+++|+|+|+.+++...++.+.+|++........   ..........
T Consensus       111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~  190 (347)
T 3hfq_A          111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR  190 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred             EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence            9999963 322  222211         122478899999999666677788999999873222211   1222233577


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCC--ceeeE--eeeCCc------cceEEEEEcCCCCEE-EEEcCCCcEEEEEC
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTN--CKLKI--NHSGHT------GYLNTVTVSPDGSLC-ASGGKDMNAMLWDL  222 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~--~~~~~~------~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~  222 (380)
                      .++|+|+++. ++++...++.|++|++..  ++...  ......      ..+..++|+|+|++| ++...++.|.+|++
T Consensus       191 ~~~~spdg~~-l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          191 HLVFSPDGQY-AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEECTTSSE-EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             eEEECCCCCE-EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            8999998752 455567789999999874  43321  222211      358889999999977 55566899999997


Q ss_pred             CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         223 NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       223 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      ........+.                                            .+..+...+..++|+|||++|++++.
T Consensus       270 ~~~g~~~~~~--------------------------------------------~~~~~~~~~~~~~~spdg~~l~v~~~  305 (347)
T 3hfq_A          270 TADGHLTLIQ--------------------------------------------QISTEGDFPRDFDLDPTEAFVVVVNQ  305 (347)
T ss_dssp             CGGGCEEEEE--------------------------------------------EEECSSSCCCEEEECTTSSEEEEEET
T ss_pred             CCCCcEEEeE--------------------------------------------EEecCCCCcCeEEECCCCCEEEEEEc
Confidence            5321111000                                            00001123457899999998888776


Q ss_pred             -CCcEEEEec
Q psy6984         303 -DKTIKLWNT  311 (380)
Q Consensus       303 -dg~v~iw~~  311 (380)
                       ++.|.+|++
T Consensus       306 ~~~~v~v~~~  315 (347)
T 3hfq_A          306 NTDNATLYAR  315 (347)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence             489999964

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=1e-18  Score=168.75  Aligned_cols=328  Identities=13%  Similarity=0.119  Sum_probs=197.9

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCc-----ceEEEEEccCCCEEEEEeCC-----
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH-----FISDIVLSSDGNYALSGSWD-----   85 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d-----   85 (380)
                      .....++.|+|+ +.+++++  ||+|++|++......     ..+.+|..     ....+.|||||++|+.++.+     
T Consensus        16 ~~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           16 RLKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSS-----VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEE-----EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             cccccccEECCC-CcEEEEc--CCcEEEEECCCCceE-----EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence            345668899998 5677775  899999998755321     11233332     23458899999999998876     


Q ss_pred             ----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE---------
Q psy6984          86 ----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV---------  152 (380)
Q Consensus        86 ----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v---------  152 (380)
                          +.+.+||+.+++... +..|...+...+|||||+.||.++ ++.|.+|+..++........++...+         
T Consensus        88 ~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             SCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EccceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence                567799999987554 566778899999999999998885 67899999876554443333433323         


Q ss_pred             --------EEEEEccCCCCCEEEEEeCC------------------------------------CeEEEEeCCC---ce-
Q psy6984         153 --------SCVRFSPNHQNPIIVSAGWD------------------------------------RMVKVWNLTN---CK-  184 (380)
Q Consensus       153 --------~~~~~~~~~~~~~l~s~~~d------------------------------------~~v~iwd~~~---~~-  184 (380)
                              ..+.|+|+++.  |+..+.|                                    ..|++||+.+   ++ 
T Consensus       166 ~ee~~~~~~~~~wSpDg~~--la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTF--LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSE--EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred             cchhcCCCcceEECCCCCE--EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence                    24889998764  4443211                                    1588899987   52 


Q ss_pred             -eeEeee------CCccceEEEEEcCCCCEEEEEc----CCCcEEEEECCCCc----EE--EE---EEecCce-----EE
Q psy6984         185 -LKINHS------GHTGYLNTVTVSPDGSLCASGG----KDMNAMLWDLNDGK----HL--HT---LVHNDII-----TA  239 (380)
Q Consensus       185 -~~~~~~------~~~~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~----~~--~~---~~~~~~i-----~~  239 (380)
                       ......      +|...+..++|+|||+.++...    .+..|++||+.+++    ..  ..   ..+...+     ..
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~  323 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE  323 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence             112222      3677899999999999666543    23479999998876    11  11   1233333     36


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee-C----CCcEEEEecccc
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-R----DKTIKLWNTLAH  314 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~----dg~v~iw~~~~~  314 (380)
                      ..|+|++....+.  .........+++|+...++.. .+......+..+. .+|++.++..+ .    .+...+|.+   
T Consensus       324 p~fspDG~~l~~~--~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v---  396 (740)
T 4a5s_A          324 PHFTLDGNSFYKI--ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKI---  396 (740)
T ss_dssp             CEECTTSSEEEEE--EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEE---
T ss_pred             ceEcCCCCEEEEE--EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEE---
Confidence            7899998653311  111122345677777655433 3333334455443 35566655433 3    244556543   


Q ss_pred             eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeC---CeEEEEEe
Q psy6984         315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD---NTIRVWQV  373 (380)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~d---g~v~iw~~  373 (380)
                            ++.+......+....     .........+.|||||++++.....   ..+.+++.
T Consensus       397 ------~~~g~~~~~~lt~~~-----~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~  447 (740)
T 4a5s_A          397 ------QLIDYTKVTCLSCEL-----NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS  447 (740)
T ss_dssp             ------ETTEEEEEEESSTTT-----STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred             ------ECCCCCcceeecccc-----CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence                  222221111111100     0112345678999999987643322   24555543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=1.7e-19  Score=169.55  Aligned_cols=267  Identities=11%  Similarity=0.081  Sum_probs=183.0

Q ss_pred             ccceEEEEeCCCCCCeEEEeeC-CCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEEEEeC---CCcEEE
Q psy6984          16 NGWVTQIATNPKFPDTILSCSR-DNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYALSGSW---DKTLRL   90 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~-dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~---d~~i~v   90 (380)
                      ..+|+++.++|+ +++||.++. ||+++||+++...      ...+..|. ..+..+.|+|| +.+++++.   +....+
T Consensus        21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~------~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l   92 (582)
T 3o4h_A           21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGE------TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHAL   92 (582)
T ss_dssp             HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTE------EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEE
T ss_pred             ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCC------cEeeecccccccccccCCCC-eEEEEeccCCCCcceEE
Confidence            357999999998 688888876 9999999974321      23344555 57999999999 77887775   454555


Q ss_pred             EECCC---CceeeeecccCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          91 WDLAA---GKTTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        91 wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      |.+..   +... .+... ..+...+|+||++. +++.+.++.+.+||+.++....... .+.   .+++|+|+++  .+
T Consensus        93 ~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~---~~~~~spDG~--~l  164 (582)
T 3o4h_A           93 FKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG---FGFVSDIRGD--LI  164 (582)
T ss_dssp             EEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS---CEEEEEEETT--EE
T ss_pred             EEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC---ceEEECCCCC--EE
Confidence            54432   2222 33322 23446688888863 3344444455699987665444332 222   6789999876  56


Q ss_pred             EEEeCC----CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC--cEEEEECCCCcEEEEE-EecCceEE
Q psy6984         167 VSAGWD----RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM--NAMLWDLNDGKHLHTL-VHNDIITA  239 (380)
Q Consensus       167 ~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~-~~~~~i~~  239 (380)
                      ++++.+    ..|++||+.+++.. .+..|...+..++|+|||+.|+++..++  .|++||+.+++.. .+ .+...+..
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~  242 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS  242 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence            766655    78999999887754 4567788899999999999999888888  8999999988876 33 23444555


Q ss_pred             EE--------eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc---EEE
Q psy6984         240 LC--------FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT---IKL  308 (380)
Q Consensus       240 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---v~i  308 (380)
                      ++        |+|++....      ....++.+.+|.+  ++...   .....+.+++|+ +++.+++++.+.+   +.+
T Consensus       243 ~~~~~~~~~~~spdg~~~~------~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~  310 (582)
T 3o4h_A          243 YRPTAITWLGYLPDGRLAV------VARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS  310 (582)
T ss_dssp             HCCSEEEEEEECTTSCEEE------EEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             hhhccccceeEcCCCcEEE------EEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence            56        999983211      1123566788888  55433   233568899999 9999998887754   666


Q ss_pred             Eecc
Q psy6984         309 WNTL  312 (380)
Q Consensus       309 w~~~  312 (380)
                      |+..
T Consensus       311 ~d~~  314 (582)
T 3o4h_A          311 LPSG  314 (582)
T ss_dssp             ETTC
T ss_pred             EcCC
Confidence            6643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=5e-19  Score=155.21  Aligned_cols=265  Identities=14%  Similarity=0.086  Sum_probs=175.2

Q ss_pred             EEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEE-EEeCCCcEEEEECCCCcee
Q psy6984          22 IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTT   99 (380)
Q Consensus        22 i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~   99 (380)
                      +++.+. +.++++++.+++|.+||+......     ..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++..
T Consensus         5 ~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B            5 PALKAG-HEYMIVTNYPNNLHVVDVASDTVY-----KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   78 (349)
T ss_dssp             CCCCTT-CEEEEEEETTTEEEEEETTTTEEE-----EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccCC-CEEEEEeCCCCeEEEEECCCCcEE-----EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence            345554 578999999999999998643211     1122221 2467899999998765 5556899999999998887


Q ss_pred             eeecccC------CCeEEEEEeCCCCEEEEEeCC------------CcEEEEeCCCcc---eEEEeeCCCcCcEEEEEEc
Q psy6984         100 RRFEDHT------KDVLSVAFSVDNRQIVSSSRD------------KTIKLWNTLAHC---KFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus       100 ~~~~~h~------~~v~~~~~~~~~~~~~s~~~d------------~~v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~  158 (380)
                      ..+....      ..+..++|+|||+++++++.+            +.|.+||+.+..   ......  +...+.+++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s  156 (349)
T 1jmx_B           79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAA  156 (349)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEEC
T ss_pred             EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeEC
Confidence            7665322      237789999999999988865            899999976522   112221  22357789999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCc------------------------cceEEEEEcCCCCE-------
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT------------------------GYLNTVTVSPDGSL-------  207 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~------------------------~~i~~~~~~~~~~~-------  207 (380)
                      |+++  +++ ++  +.|.+||+.+.+.......+.                        ..+..+++++++..       
T Consensus       157 ~dg~--l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  231 (349)
T 1jmx_B          157 DDGS--LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL  231 (349)
T ss_dssp             TTSC--EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred             CCCc--EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence            9875  444 43  349999998877655443221                        03345666655421       


Q ss_pred             ----EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc
Q psy6984         208 ----CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF  282 (380)
Q Consensus       208 ----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (380)
                          +.....++.+.+|++        -.....+..++++| ++.+....        .+.+.+|+..+++....+. ..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~sp~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~-~~  294 (349)
T 1jmx_B          232 LYGYLSVDLKTGKTHTQEF--------ADLTELYFTGLRSPKDPNQIYGV--------LNRLAKYDLKQRKLIKAAN-LD  294 (349)
T ss_dssp             EEEEEEEETTTCCEEEEEE--------EECSSCEEEEEECSSCTTEEEEE--------ESEEEEEETTTTEEEEEEE-CS
T ss_pred             ceeEEEEeccCCcEEeccc--------ccCCCcceeeEecCCCCCEEEEE--------cCeEEEEECccCeEEEEEc-CC
Confidence                112223344444433        12567788899999 87653322        4678899998887655443 23


Q ss_pred             cceeEEEEeecCCEEEEeeCCCcEEEEeccccee
Q psy6984         283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  316 (380)
Q Consensus       283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  316 (380)
                      ..+.+++|+|++++|++++.++.|++||..+...
T Consensus       295 ~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          295 HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             CCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence            4577899999999998888899999998755443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=7.7e-18  Score=148.63  Aligned_cols=245  Identities=7%  Similarity=0.104  Sum_probs=160.4

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCC----CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEE
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRD----NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLR   89 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~d----g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~   89 (380)
                      |...+..++++|+ +++|++++.+    +.|.+|+++....... .......+......+++  ++++|++++ .++.|.
T Consensus        48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~-~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLH-LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEE-EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred             cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEE-EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEE
Confidence            6677888999998 6788888875    8999999875321111 11122234445666777  888887776 578999


Q ss_pred             EEECCCCceeeeec--------------ccCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcce------E------E
Q psy6984          90 LWDLAAGKTTRRFE--------------DHTKDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCK------F------T  142 (380)
Q Consensus        90 vwd~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~------~------~  142 (380)
                      +|++.....+....              .+...+.+++|+|+|++++++. .++.+.+|++.....      +      .
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            99997543332211              1123357899999999776555 588999998654321      1      1


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeCCCceeeE--ee---eCCccceEEEEEcCCCCEEEEEcC--C
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNLTNCKLKI--NH---SGHTGYLNTVTVSPDGSLCASGGK--D  214 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~--~~---~~~~~~i~~~~~~~~~~~l~~~~~--d  214 (380)
                      ............++|+|+++  ++++++ .++.|.+||+.++++..  ..   ..+...+..++|+|+|++|+++..  +
T Consensus       204 ~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~  281 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGK--FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA  281 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSS--EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred             ceecCCCCCCeEEEEcCCCC--EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence            22233445678999999875  454444 68999999998665422  12   223345679999999998866655  4


Q ss_pred             CcEEEEECC--CCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         215 MNAMLWDLN--DGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       215 ~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      +.|.+|++.  +++......                                             +.. ...+..++|+|
T Consensus       282 ~~i~v~~~~~~~g~~~~~~~---------------------------------------------~~~-g~~~~~~~~sp  315 (361)
T 3scy_A          282 DGVAIFKVDETNGTLTKVGY---------------------------------------------QLT-GIHPRNFIITP  315 (361)
T ss_dssp             CEEEEEEECTTTCCEEEEEE---------------------------------------------EEC-SSCCCEEEECT
T ss_pred             CEEEEEEEcCCCCcEEEeeE---------------------------------------------ecC-CCCCceEEECC
Confidence            899999985  232110000                                             000 12345789999


Q ss_pred             cCCEEEEee-CCCcEEEEec
Q psy6984         293 DNRQIVSSS-RDKTIKLWNT  311 (380)
Q Consensus       293 ~~~~l~s~~-~dg~v~iw~~  311 (380)
                      +|++|++++ .++.|.+|++
T Consensus       316 dg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          316 NGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             TSCEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEE
Confidence            999888887 5789999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=1.2e-19  Score=174.85  Aligned_cols=279  Identities=11%  Similarity=0.053  Sum_probs=182.0

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCC---CeEEEEEeCCCCEEEEEeC---------CCcEEEEeCC
Q psy6984          69 DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTK---DVLSVAFSVDNRQIVSSSR---------DKTIKLWNTL  136 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~s~~~---------d~~v~iwd~~  136 (380)
                      .+.|+|||++++ .+.|+.|++||+.+++....+..|..   .+.+++|+|||+++++++.         ++.+++||+.
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            678999996555 45699999999999988777665543   4889999999999998876         7899999987


Q ss_pred             CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee-eCCccce-----------------EE
Q psy6984         137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH-SGHTGYL-----------------NT  198 (380)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~i-----------------~~  198 (380)
                      ++......  .....+..++|+|+++.  |+.+. ++.|++||+.+++..... .++...+                 .+
T Consensus        99 ~g~~~~~~--~l~~~~~~~~~SPDG~~--la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFVRGN--ELPRPIQYLCWSPVGSK--LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEECCSS--CCCSSBCCEEECSSTTC--EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccccce--ecCcccccceECCCCCE--EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            65431000  11245788999999864  55554 789999999876543321 2222222                 47


Q ss_pred             EEEcCCCCEEEEEcCCC----------------------------------cEEEEECCCCcEE--EEE-------EecC
Q psy6984         199 VTVSPDGSLCASGGKDM----------------------------------NAMLWDLNDGKHL--HTL-------VHND  235 (380)
Q Consensus       199 ~~~~~~~~~l~~~~~d~----------------------------------~i~i~d~~~~~~~--~~~-------~~~~  235 (380)
                      ++|+|||++|++++.|.                                  .|++||+.+++..  ..+       .+..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            99999999999987652                                  7889999887642  111       1455


Q ss_pred             ceEEEEeecCcccceeeeeeeeeccccceEEEE----cCCceeeeee----ecccccee-----EEEEeecCCEEEE--e
Q psy6984         236 IITALCFSPNRSFQKIKLDISRTLQKSNLILYP----INHGKMETPF----FSLFRDVL-----SVAFSVDNRQIVS--S  300 (380)
Q Consensus       236 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~s--~  300 (380)
                      .+..++|+|++.....  ...+......+++++    ..+++....+    ..+...+.     .++|+|||+.|+.  .
T Consensus       254 ~~~~~~~SpD~~~~~~--~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  331 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQ--WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS  331 (719)
T ss_dssp             EEEEEEESSSSEEEEE--EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEE
T ss_pred             eEEEeEEeCCCeEEEE--EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEE
Confidence            6889999999653222  111222234577888    7666654433    23444454     7899999996543  5


Q ss_pred             eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee-----CCeEEEEEeee
Q psy6984         301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS-----DNTIRVWQVSV  375 (380)
Q Consensus       301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~-----dg~v~iw~~~~  375 (380)
                      ..+|..++|-.         +..+... ..+.         .+...+..+.++ +|+.|+..+.     ++.+++|.+..
T Consensus       332 ~~~g~~~l~~~---------~~~~~~~-~~lt---------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          332 DKDGYKHIHYI---------KDTVENA-IQIT---------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             CTTSCEEEEEE---------SSCSTTC-EECS---------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             ccCCceEEEEE---------ECCCCce-Eecc---------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            56665444421         1121110 1110         112234566666 8887776554     48899999875

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=2.7e-18  Score=151.78  Aligned_cols=280  Identities=6%  Similarity=0.032  Sum_probs=174.6

Q ss_pred             eEEEeeC--CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC-CCceeeeeccc-C
Q psy6984          31 TILSCSR--DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDH-T  106 (380)
Q Consensus        31 ~l~t~~~--dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~h-~  106 (380)
                      +++.|+.  ++.|.+|+++...................+..++++|||++|++++.+ .|.+|++. +++........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            3444544  256777776432211111000001233357789999999999999988 99999997 77654432211 1


Q ss_pred             CCeEEEEEeCCCCE--EEEEe-------------CCCcEEEEeCCC-cceEEEee---CCCcCcEEEEEEccCCCCCEEE
Q psy6984         107 KDVLSVAFSVDNRQ--IVSSS-------------RDKTIKLWNTLA-HCKFTIVE---DGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus       107 ~~v~~~~~~~~~~~--~~s~~-------------~d~~v~iwd~~~-~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      +.+..++|+|||+.  ++++.             .++.+.+|++.. +.......   ..+...+.+++|+|+++  +++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~--~l~  160 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET--YLY  160 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS--EEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC--EEE
Confidence            23556889999995  44543             689999999753 32221111   12445689999999875  455


Q ss_pred             EEe-CCCeEEEEeCC-CceeeE--eee--CCccceEEEEEcCCCCEEEEEcC-CCcEEEEECC--CCcEEE---EEE-ec
Q psy6984         168 SAG-WDRMVKVWNLT-NCKLKI--NHS--GHTGYLNTVTVSPDGSLCASGGK-DMNAMLWDLN--DGKHLH---TLV-HN  234 (380)
Q Consensus       168 s~~-~d~~v~iwd~~-~~~~~~--~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~~~---~~~-~~  234 (380)
                      ++. .++.|++||+. ++++..  ...  .|...+..++|+|+|+++++++. ++.+.+|++.  +++...   .+. .+
T Consensus       161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  240 (365)
T 1jof_A          161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence            544 46899999998 555432  222  23456899999999998877664 7899999765  455321   221 11


Q ss_pred             ------C-------ceEEEE-eecCcccceeeeeeeeeccccceEEEEcC-Cceeeee---eeccccceeEEEEee---c
Q psy6984         235 ------D-------IITALC-FSPNRSFQKIKLDISRTLQKSNLILYPIN-HGKMETP---FFSLFRDVLSVAFSV---D  293 (380)
Q Consensus       235 ------~-------~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~v~~~~~s~---~  293 (380)
                            .       .+..++ |+|++++.............+.+.+|++. .++....   ...+......++|+|   |
T Consensus       241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d  320 (365)
T 1jof_A          241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence                  1       478899 99998764322110000001268899885 4554321   112334566889999   8


Q ss_pred             CCEEEEeeCC-CcEEEEeccc
Q psy6984         294 NRQIVSSSRD-KTIKLWNTLA  313 (380)
Q Consensus       294 ~~~l~s~~~d-g~v~iw~~~~  313 (380)
                      |++|++++.+ +.|++|+...
T Consensus       321 g~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          321 DEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEEET
T ss_pred             CCEEEEEEcCCCeEEEEEEch
Confidence            9999988764 8999998643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=7.2e-18  Score=149.03  Aligned_cols=274  Identities=9%  Similarity=0.031  Sum_probs=167.5

Q ss_pred             EEEEEeCC--CcEEEEEC--CCCceeeeec---ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CcceEEEee-CCC
Q psy6984          78 YALSGSWD--KTLRLWDL--AAGKTTRRFE---DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL-AHCKFTIVE-DGH  148 (380)
Q Consensus        78 ~l~s~~~d--~~i~vwd~--~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~-~~~~~~~~~-~~~  148 (380)
                      +++.|+..  +.|.+|++  .+++....-.   .....+..++|+||++++++++.+ .+.+|++. .+....... ..+
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            34555542  46777665  4554432211   233467889999999999998888 89999975 443322211 111


Q ss_pred             cCcEEEEEEccCCCCCEEEEEe-------------CCCeEEEEeCCC-ceeeEeee----CCccceEEEEEcCCCCEEEE
Q psy6984         149 SDWVSCVRFSPNHQNPIIVSAG-------------WDRMVKVWNLTN-CKLKINHS----GHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       149 ~~~v~~~~~~~~~~~~~l~s~~-------------~d~~v~iwd~~~-~~~~~~~~----~~~~~i~~~~~~~~~~~l~~  210 (380)
                       ....+++++|+++..+++++.             .++.+++|++.. +++.....    .+...+..++|+|+|+++++
T Consensus        83 -g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           83 -GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             -SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             -CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence             124457888876532344543             689999999973 44332222    24557899999999998877


Q ss_pred             Ec-CCCcEEEEECC-CCcEE--EEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC--Cceeee---ee
Q psy6984         211 GG-KDMNAMLWDLN-DGKHL--HTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN--HGKMET---PF  278 (380)
Q Consensus       211 ~~-~d~~i~i~d~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~  278 (380)
                      +. .++.|++||+. +++..  ..+.   +...+..++|+|++.+....     ....+.+.+|+..  +++...   ..
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-----~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-----MEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-----ETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE-----ECCCCeEEEEEEeCCCCcEEEccceE
Confidence            65 46899999998 67643  2232   24568899999998754322     1123566777654  344321   11


Q ss_pred             ec-------ccc------ceeEEE-EeecCCEEEEeeCCC------cEEEEecccceeeeEeecccceEEEeeCcccccc
Q psy6984         279 FS-------LFR------DVLSVA-FSVDNRQIVSSSRDK------TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ  338 (380)
Q Consensus       279 ~~-------~~~------~v~~~~-~s~~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (380)
                      ..       +..      .+..++ |+|||++|+++..+.      +|++|++....++...       .....      
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~-------~~~~~------  303 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ-------LFLSP------  303 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE-------EEEEE------
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEe-------eeeee------
Confidence            11       111      477899 999999988766432      8999986421111100       00000      


Q ss_pred             cCCCCCCceEEEEEec---CCCEEEEEee-CCeEEEEEee
Q psy6984         339 STKADPPMCLSLAWST---DGQTLFAGYS-DNTIRVWQVS  374 (380)
Q Consensus       339 ~~~~~~~~~~~~~~s~---dg~~l~~g~~-dg~v~iw~~~  374 (380)
                         ........++|+|   ||++|++++. ++.|++|++.
T Consensus       304 ---~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          304 ---TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             ---CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             ---cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence               0011123578999   8999998876 5899999885

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.81  E-value=7.9e-18  Score=160.70  Aligned_cols=251  Identities=11%  Similarity=0.078  Sum_probs=165.5

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEe--eCCCeEEEeecCCCCCCcccccccccCCCcceE---------EEEEc--cCCC
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSC--SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS---------DIVLS--SDGN   77 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~--~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~   77 (380)
                      .+.+|...|..+.++++ .-++++.  +.++...+|.......     ...+..|...+.         ...++  |||+
T Consensus        18 ~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~   91 (662)
T 3azo_A           18 LVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGA-----EESALPAPWNVRNRVFEYSGFPWAGVPRPAGG   91 (662)
T ss_dssp             HHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSC-----EEESSCTTCCBCCCGGGTCCCCEEEECCSSSS
T ss_pred             HHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCC-----cceeCCCCccccccccccCCccceeeeecCCC
Confidence            35678999999999976 3445555  5588999998632211     223444544444         45555  9999


Q ss_pred             E-EEEEeC-CCcEEEEECC--C-Cceeeeecc-----cCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEeCCC
Q psy6984          78 Y-ALSGSW-DKTLRLWDLA--A-GKTTRRFED-----HTKDVLSVAFSVDNRQIVSSSRD----------KTIKLWNTLA  137 (380)
Q Consensus        78 ~-l~s~~~-d~~i~vwd~~--~-~~~~~~~~~-----h~~~v~~~~~~~~~~~~~s~~~d----------~~v~iwd~~~  137 (380)
                      + |+.++. +..|+++++.  . ++ ...+..     |...+..++|+|||+.|+.++.+          ..|.+||+.+
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            8 776554 5677777775  2 33 444444     56678899999999999988876          5899999876


Q ss_pred             ------cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC--------CeEEEEeCC-Cc---eeeEeeeCCccceEEE
Q psy6984         138 ------HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD--------RMVKVWNLT-NC---KLKINHSGHTGYLNTV  199 (380)
Q Consensus       138 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------~~v~iwd~~-~~---~~~~~~~~~~~~i~~~  199 (380)
                            +.. ..+...+...+..++|+|+++  .|+.++.+        ..|++||+. ++   +......+|...+..+
T Consensus       171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~--~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~  247 (662)
T 3azo_A          171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGR--QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA  247 (662)
T ss_dssp             TTTTCGGGS-EESSCSCSSEECCCEECTTSS--EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred             CccccCCce-eEEEecCCCcccCceECCCCC--EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence                  433 233213345677899999876  45555433        479999998 45   4433344456788999


Q ss_pred             EEcCCCCEEEEEcCCC--cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984         200 TVSPDGSLCASGGKDM--NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP  277 (380)
Q Consensus       200 ~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (380)
                      .|+|||++++++..++  .|++||+.+++......+...+....|+                                  
T Consensus       248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~----------------------------------  293 (662)
T 3azo_A          248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWT----------------------------------  293 (662)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCS----------------------------------
T ss_pred             EECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccc----------------------------------
Confidence            9999999888888888  6666666555432211111110000010                                  


Q ss_pred             eeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       278 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                           ..+..++|+|+++++++++. +.+++|.+
T Consensus       294 -----~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          294 -----PGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             -----TTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             -----ccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence                 11345789999999999998 99999953

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=2.7e-18  Score=153.26  Aligned_cols=213  Identities=10%  Similarity=-0.061  Sum_probs=132.9

Q ss_pred             eeeEEeEEecCcccc-----eEEEEeCCCCCCeEEEeeC-CC--eEEEeecCCCCCCcccccccccCCCcc-eEEEEEcc
Q psy6984           4 ETLQLRGTLNGHNGW-----VTQIATNPKFPDTILSCSR-DN--TLIIWKLTRDDTNYGVPQKRLKGHSHF-ISDIVLSS   74 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~-----v~~i~~~~~~~~~l~t~~~-dg--~v~vw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~   74 (380)
                      .+.+....|..+...     +..+.|+|+ +++|+.... ++  .+.+|++.....      ..+..+... ...+.|+|
T Consensus        18 ~~g~~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~------~~l~~~~~~~~~~~~~sp   90 (396)
T 3c5m_A           18 DTQVKVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQA------VQLTEGKGDNTFGGFIST   90 (396)
T ss_dssp             TTCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEE------EECCCSSCBCTTTCEECT
T ss_pred             CCCcceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcE------EEeecCCCCccccceECC
Confidence            333444555555433     778889998 567665543 33  677777654321      112222222 33478999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEE-------------------EEEeCCCCEEEEE-----eCCCcE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLS-------------------VAFSVDNRQIVSS-----SRDKTI  130 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~~s~-----~~d~~v  130 (380)
                      ||++|+.++.++.|++||+.+++.......+......                   +.|+|+++.++..     ..+..|
T Consensus        91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            9999999999999999999988766555434332222                   2456777665543     356688


Q ss_pred             EEEeCCCcceEEEeeCCCcCcEEEEEEcc-CCCCCEEEEEeCC------CeEEEEeCCCceeeEeeeCC-ccceEEEEEc
Q psy6984         131 KLWNTLAHCKFTIVEDGHSDWVSCVRFSP-NHQNPIIVSAGWD------RMVKVWNLTNCKLKINHSGH-TGYLNTVTVS  202 (380)
Q Consensus       131 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~  202 (380)
                      .+||+.++......  .+...+..+.|+| ++..  |+..+.+      ..|.+||+...+........ ...+..+.|+
T Consensus       171 ~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~--l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s  246 (396)
T 3c5m_A          171 IKVDIETGELEVIH--QDTAWLGHPIYRPFDDST--VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI  246 (396)
T ss_dssp             EEEETTTCCEEEEE--EESSCEEEEEEETTEEEE--EEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC
T ss_pred             EEEECCCCcEEeec--cCCcccccceECCCCCCE--EEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC
Confidence            99998765544333  2455688999999 5543  3332222      46888998765433322221 2357889999


Q ss_pred             CCCCEEEEEcCC-----CcEEEEECCCCcE
Q psy6984         203 PDGSLCASGGKD-----MNAMLWDLNDGKH  227 (380)
Q Consensus       203 ~~~~~l~~~~~d-----~~i~i~d~~~~~~  227 (380)
                      |+|++|+..+.+     +.|++||+.+++.
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            999987766543     3489999877653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=4.5e-16  Score=132.65  Aligned_cols=244  Identities=13%  Similarity=0.205  Sum_probs=168.1

Q ss_pred             cCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec------ccCCCeEEEEEe-CCCCEEEEEeC-CCcEEE
Q psy6984          61 KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE------DHTKDVLSVAFS-VDNRQIVSSSR-DKTIKL  132 (380)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~-~~~~~~~s~~~-d~~v~i  132 (380)
                      .++-..+.+++++++++++++...++.|.+||.. ++....+.      .+...+..++++ +++..+++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3455668899999999988888889999999987 55555553      234568899994 67766666543 889999


Q ss_pred             EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEE
Q psy6984         133 WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       133 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~  210 (380)
                      ||. ...........+...+.++++.|++.  ++++...++.|.+||... +....+.  .+...+..++++|+|+++++
T Consensus       105 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          105 YNQ-YGQFVRKFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             ECC-CCcEEEEecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            994 34444334334455688999998753  677777789999999754 3333332  34456899999999998888


Q ss_pred             EcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEE
Q psy6984         211 GGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAF  290 (380)
Q Consensus       211 ~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  290 (380)
                      ...++.|++||.. ++.+..+..           .                                  +....+..+++
T Consensus       181 ~~~~~~i~~~~~~-g~~~~~~~~-----------~----------------------------------g~~~~p~~i~~  214 (286)
T 1q7f_A          181 DNRAHCVKVFNYE-GQYLRQIGG-----------E----------------------------------GITNYPIGVGI  214 (286)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESC-----------T----------------------------------TTSCSEEEEEE
T ss_pred             ECCCCEEEEEcCC-CCEEEEEcc-----------C----------------------------------CccCCCcEEEE
Confidence            8889999999974 332222110           0                                  00123457899


Q ss_pred             eecCCEEEEeeCCC-cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEE
Q psy6984         291 SVDNRQIVSSSRDK-TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIR  369 (380)
Q Consensus       291 s~~~~~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~  369 (380)
                      +|+|+++++...++ .|++|+... ..+..+..                  ......+..++++|+|+++++ +.|+.|+
T Consensus       215 d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~------------------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~  274 (286)
T 1q7f_A          215 NSNGEILIADNHNNFNLTIFTQDG-QLISALES------------------KVKHAQCFDVALMDDGSVVLA-SKDYRLY  274 (286)
T ss_dssp             CTTCCEEEEECSSSCEEEEECTTS-CEEEEEEE------------------SSCCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred             CCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcc------------------cCCCCcceeEEECCCCcEEEE-CCCCeEE
Confidence            99999888887775 999998432 21111100                  011123568999999997776 5799999


Q ss_pred             EEEeee
Q psy6984         370 VWQVSV  375 (380)
Q Consensus       370 iw~~~~  375 (380)
                      +|++..
T Consensus       275 v~~~~~  280 (286)
T 1q7f_A          275 IYRYVQ  280 (286)
T ss_dssp             EEECSC
T ss_pred             EEEccc
Confidence            999754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=2.3e-16  Score=137.28  Aligned_cols=244  Identities=12%  Similarity=0.144  Sum_probs=176.6

Q ss_pred             cceEEEEEccCCCEEEEEeCC------------------------CcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCC
Q psy6984          65 HFISDIVLSSDGNYALSGSWD------------------------KTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNR  119 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d------------------------~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~  119 (380)
                      ..+.+++++|+|+++++...+                        +.|.+||..+++....+. .+...+..++++|+|+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            458999999999999888877                        479999998888876654 3445788999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCcc-eEEEee--------CCCcCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeCCCceeeEee
Q psy6984         120 QIVSSSRDKTIKLWNTLAHC-KFTIVE--------DGHSDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNLTNCKLKINH  189 (380)
Q Consensus       120 ~~~s~~~d~~v~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~  189 (380)
                      .+++...++.|++||..... ....+.        ..+......++++|+.. .++++.+ .++.|++||.. ++....+
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~-g~~~~~~  181 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPS-GKFVTQW  181 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTT-SCEEEEE
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCC-CCEEEEe
Confidence            88888889999999975442 222221        23445688999998322 2666665 68999999954 4443333


Q ss_pred             e----------CCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEE---ecCceEEEEeecCcccceee-ee
Q psy6984         190 S----------GHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLV---HNDIITALCFSPNRSFQKIK-LD  254 (380)
Q Consensus       190 ~----------~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~-~~  254 (380)
                      .          ++...+..++++|+ ++++++...+++|++||..+++.+..+.   +...+..++++| +...... ..
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            2          12334889999998 7888888899999999999888877764   345677888888 2111111 00


Q ss_pred             eeeeccccceEEEEcCCceeeeeee---ccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         255 ISRTLQKSNLILYPINHGKMETPFF---SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      .........+.+|+...++....+.   .+......++++|+|..+++...++.|++|+.
T Consensus       261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            1111234567888888887766542   44566889999999988888888999999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=4.3e-16  Score=132.74  Aligned_cols=246  Identities=15%  Similarity=0.260  Sum_probs=168.7

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccc-ccccCCCcceEEEEE-ccCCCEEEEEeC-CCcEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ-KRLKGHSHFISDIVL-SSDGNYALSGSW-DKTLRL   90 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~-~~~~~h~~~v~~~~~-~~~~~~l~s~~~-d~~i~v   90 (380)
                      +|...+..+++.++ +.++++.+.++.|++|+.... ....... ....+|...+..+++ .++++++++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~g~-~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCC-CCEEEEECCCCEEEEECCCCc-EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            44567999999987 578888788999999986532 1111110 011234556889999 467766666543 889999


Q ss_pred             EECCCCceeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          91 WDLAAGKTTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        91 wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      || .+++....+.. +...+.+++++|+++.+++...++.|.+||.............+...+.++++++++.  ++++.
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~  181 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE--IFISD  181 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE--EEEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC--EEEEE
Confidence            99 55666665532 3456899999999998888888899999996543222222223445688999998753  66777


Q ss_pred             eCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCC-cEEEEECCCCcEEEEEEecCceEEEEeecCc
Q psy6984         170 GWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDM-NAMLWDLNDGKHLHTLVHNDIITALCFSPNR  246 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~  246 (380)
                      ..++.|++||... +....+.  ++...+..++++|+|+++++...++ .|.+||. +++.+..+....           
T Consensus       182 ~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~-----------  248 (286)
T 1q7f_A          182 NRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-----------  248 (286)
T ss_dssp             GGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-----------
T ss_pred             CCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC-----------
Confidence            7789999999854 3333333  2235789999999999988888886 9999985 344332221100           


Q ss_pred             ccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                                                        ....+.+++++|+|+++++ +.|+.|++|+..
T Consensus       249 ----------------------------------~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          249 ----------------------------------KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             ----------------------------------CCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             ----------------------------------CCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence                                              0012457899999987777 579999999753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=2.2e-17  Score=159.35  Aligned_cols=236  Identities=13%  Similarity=0.154  Sum_probs=159.6

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC-----eEEEEEeCCCCEEEEEeCC---------CcEEE
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD-----VLSVAFSVDNRQIVSSSRD---------KTIKL  132 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~s~~~d---------~~v~i  132 (380)
                      ...+.|+|||++++++  |+.|++||+.+++....+..|...     ..+++|||||+.++.++.+         +.+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            5579999999988886  999999999999887777766532     2447899999999998876         45669


Q ss_pred             EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-eeCCccce---------------
Q psy6984         133 WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-HSGHTGYL---------------  196 (380)
Q Consensus       133 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~i---------------  196 (380)
                      ||+.++....  ...+...+..++|+|+++.  |+.+ .++.|++||+.+++.... ..++...+               
T Consensus        97 ~d~~~~~~~~--l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           97 YDLNKRQLIT--EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EETTTTEECC--SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EECCCCcEEE--cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            9987765432  2345667999999999874  4444 478999999987654321 22222222               


Q ss_pred             --EEEEEcCCCCEEEEEcCCC------------------------------------cEEEEECCC---C---cEEEEEE
Q psy6984         197 --NTVTVSPDGSLCASGGKDM------------------------------------NAMLWDLND---G---KHLHTLV  232 (380)
Q Consensus       197 --~~~~~~~~~~~l~~~~~d~------------------------------------~i~i~d~~~---~---~~~~~~~  232 (380)
                        ..+.|||||+.|+.++.|.                                    .|++||+.+   +   +......
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence              3488999999998875321                                    588899988   7   3333222


Q ss_pred             ------ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce----e--eeee--eccccc-----eeEEEEeec
Q psy6984         233 ------HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK----M--ETPF--FSLFRD-----VLSVAFSVD  293 (380)
Q Consensus       233 ------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~--~~~~~~-----v~~~~~s~~  293 (380)
                            +...+..++|+|++.....  ...+......+.+++..+++    .  ...+  ..+...     ....+|+||
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~--~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQ--WLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEE--EEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEE--EeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence                  4556889999999874322  22223334467888887765    1  1112  122222     236889999


Q ss_pred             CCEEE-Eee-CCC--cEEEEec
Q psy6984         294 NRQIV-SSS-RDK--TIKLWNT  311 (380)
Q Consensus       294 ~~~l~-s~~-~dg--~v~iw~~  311 (380)
                      |+.|+ ..+ .+|  .|++|+.
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEET
T ss_pred             CCEEEEEEEcCCCceEEEEEEC
Confidence            99877 555 455  4555554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=7.7e-16  Score=135.53  Aligned_cols=263  Identities=9%  Similarity=0.006  Sum_probs=171.9

Q ss_pred             CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC----------CCcEEEEECCCCceeeeeccc-
Q psy6984          37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW----------DKTLRLWDLAAGKTTRRFEDH-  105 (380)
Q Consensus        37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~h-  105 (380)
                      .|+.|.+||......     ...+..+..+  .++|+|||++|+++..          ++.|.+||..+.+.+..+... 
T Consensus        29 ~d~~v~v~D~~t~~~-----~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTNGKF-----LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTTCCE-----EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             ccCeEEEEECCCCeE-----EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            478999999754322     1223334333  8999999999998863          567999999988888776532 


Q ss_pred             -----CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEE-eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEE
Q psy6984         106 -----TKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKV  177 (380)
Q Consensus       106 -----~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~i  177 (380)
                           ......++++|||++++++..  ++.|.+||+.+...... +..  . ....+.+.|.+. ..+++.+.||.+.+
T Consensus       102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~-~~~~v~~~p~~~-~~~~~~~~dg~~~~  177 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--A-GCWSVIPQPNRP-RSFMTICGDGGLLT  177 (361)
T ss_dssp             TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--T-TEEEEEECTTSS-SEEEEEETTSSEEE
T ss_pred             cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--C-CcceeEEcCCCC-eeEEEECCCCcEEE
Confidence                 234667999999999998764  68999999887655433 321  1 123356677654 46778888999999


Q ss_pred             EeCCC-ceeeEee------eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEEe-----------cCce
Q psy6984         178 WNLTN-CKLKINH------SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH--LHTLVH-----------NDII  237 (380)
Q Consensus       178 wd~~~-~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~-----------~~~i  237 (380)
                      |++.. ++.....      .....++ .+.++|++..++..+.++.+.++|+.....  ...+..           ....
T Consensus       178 v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~  256 (361)
T 2oiz_A          178 INLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGY  256 (361)
T ss_dssp             EEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCS
T ss_pred             EEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCe
Confidence            99864 3332111      1111111 223356777777778899999999875432  122111           1111


Q ss_pred             EEEEeecCcccceeeeeeeee-----ccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecc
Q psy6984         238 TALCFSPNRSFQKIKLDISRT-----LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  312 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  312 (380)
                      ..++++|++............     .....+.+|+..+++....+..+.  ...++|+|||++|++++. ++|.+||..
T Consensus       257 ~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          257 NLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             SCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred             eEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence            126778876543222110000     013468889999988877665554  899999999999998876 999999865


Q ss_pred             cc
Q psy6984         313 AH  314 (380)
Q Consensus       313 ~~  314 (380)
                      ++
T Consensus       334 t~  335 (361)
T 2oiz_A          334 QP  335 (361)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=1e-15  Score=133.46  Aligned_cols=293  Identities=11%  Similarity=0.056  Sum_probs=185.3

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      ...|.++.++++ ...++..+.++.++.|.-.        ....+..+...+.+++|+++|++++++..++.|.+||..+
T Consensus         5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            5 QQDLPTLFYSGK-SNSAVPIISESELQTITAE--------PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             -CCCCBCCSCGG-GGCSSCCCCGGGSCEEECE--------EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             ccccceeeecCC-ccceeEEeecccCcccccc--------eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            346778888887 4556666778899999311        1223445556678999999999888888899999999988


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      ++.......+...+.+++++|+++++++...+    +.|.+||..+........ ......+.++++.|++.  ++++..
T Consensus        76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~  153 (333)
T 2dg1_A           76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG--FYFTDF  153 (333)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC--EEEEEC
T ss_pred             CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC--EEEEec
Confidence            87665544566789999999999988877766    689999976654432222 22345688999999753  555544


Q ss_pred             C------CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCC-CcEEEEEEecCceEEEEe
Q psy6984         171 W------DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLND-GKHLHTLVHNDIITALCF  242 (380)
Q Consensus       171 ~------d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~  242 (380)
                      .      .+.|..+|..+.+.... ..+...+..++++|+|+.+ ++.+.++.|.+||+.+ +.....+..     ..  
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~-----~~--  225 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA-----TI--  225 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-----EE--
T ss_pred             cccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc-----eE--
Confidence            2      35666777655443322 2233457889999999855 5556678999999853 222211100     00  


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL  322 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  322 (380)
                                             .....         . ...+..++++++|+++++...++.|.+|+.. +..+..+..
T Consensus       226 -----------------------~~~~~---------~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~  271 (333)
T 2dg1_A          226 -----------------------PYYFT---------G-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILI  271 (333)
T ss_dssp             -----------------------EEECC---------S-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEEC
T ss_pred             -----------------------EEecC---------C-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEc
Confidence                                   00000         0 0123468899999988887778999999862 222211110


Q ss_pred             ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCC----eEEEEEeee
Q psy6984         323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDN----TIRVWQVSV  375 (380)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg----~v~iw~~~~  375 (380)
                      ..              ....+...+.+++|+|||+.|+.++.++    .-.+|.+..
T Consensus       272 ~~--------------~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          272 PG--------------RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             TT--------------GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CC--------------CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence            00              0000111356789999988877666553    345666544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=2e-16  Score=140.87  Aligned_cols=266  Identities=12%  Similarity=0.066  Sum_probs=169.3

Q ss_pred             EEECCCCceeeeecccCCCeEE-----EEEeCCCCEEEEEeC-CCc--EEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLS-----VAFSVDNRQIVSSSR-DKT--IKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~-----~~~~~~~~~~~s~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .+|..++.....+..|......     .+|+|||+.|+.++. ++.  |.+||+.++... .+..++...+..+.|+|++
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCSSCBCSSSCEECTTS
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeCCCCCccceEEcCCC
Confidence            3466777777777777666555     789999999998887 664  777787665443 3333444444457899987


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEE--EEcCCCCEEEEE----------------------cCCCcE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV--TVSPDGSLCASG----------------------GKDMNA  217 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~----------------------~~d~~i  217 (380)
                      +  .|+.++.++.|++||+.+++.......+...+...  .++|++++++..                      ..+..|
T Consensus        93 ~--~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           93 D--ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             S--EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             C--EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            5  57778888999999999887665555554444333  358999988742                      245789


Q ss_pred             EEEECCCCcEEEEEEecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeeccc--cceeEEEEeecC
Q psy6984         218 MLWDLNDGKHLHTLVHNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF--RDVLSVAFSVDN  294 (380)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~  294 (380)
                      ++||+.+++......+...+..+.|+| ++.................+++++...+... .+....  ..+..++|+|||
T Consensus       171 ~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg  249 (388)
T 3pe7_A          171 MRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDG  249 (388)
T ss_dssp             EEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTS
T ss_pred             EEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCC
Confidence            999999998766666777889999999 8765443322111111346777776655432 233333  246788999999


Q ss_pred             CEEEEeeC-CC----cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE-------
Q psy6984         295 RQIVSSSR-DK----TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG-------  362 (380)
Q Consensus       295 ~~l~s~~~-dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g-------  362 (380)
                      +.|+..+. ++    .|++||+..+....+.......... .           .   ....+|+|||+.|+..       
T Consensus       250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-~-----------~---~~~~~~spdg~~l~~~~~~~~~~  314 (388)
T 3pe7_A          250 SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM-S-----------N---YDGSLMVGDGSDAPVDVQDDSGY  314 (388)
T ss_dssp             SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE-E-----------C---TTSSEEEEEECCC----------
T ss_pred             CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee-e-----------c---CCCCeEccCCCcceeEeeecccc
Confidence            98766443 22    3999987655432222111100000 0           0   0013699999988753       


Q ss_pred             --eeCCeEEEEEee
Q psy6984         363 --YSDNTIRVWQVS  374 (380)
Q Consensus       363 --~~dg~v~iw~~~  374 (380)
                        ..+..|.+|++.
T Consensus       315 ~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          315 KIENDPFLYVFNMK  328 (388)
T ss_dssp             --CCCCEEEEEETT
T ss_pred             ccCCCCEEEEEecc
Confidence              345688999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=3.5e-15  Score=129.81  Aligned_cols=244  Identities=13%  Similarity=0.127  Sum_probs=168.4

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCC------------------------CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984         106 TKDVLSVAFSVDNRQIVSSSRD------------------------KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus       106 ~~~v~~~~~~~~~~~~~s~~~d------------------------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      -+.+.+++++|+|+.+++...+                        +.|.+||..++........++......++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3568999999999998888877                        4799999766655544444555678899999876


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCce-eeEee---------eCCccceEEEEEcC-CCCEEEEEc-CCCcEEEEECCCCcEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCK-LKINH---------SGHTGYLNTVTVSP-DGSLCASGG-KDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~~~~  229 (380)
                      .  ++++...++.|+.||..... ....+         .++...+..++++| +++++++.+ .++.|++|| .+++.+.
T Consensus       103 ~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          103 N--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             C--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             C--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            4  77788888999999986542 22222         23445789999999 888888886 699999999 5676666


Q ss_pred             EEEe-c----------CceEEEEeecC-cccceeeeeeeeeccccceEEEEcCCceeeeeee--ccccceeEEEEee---
Q psy6984         230 TLVH-N----------DIITALCFSPN-RSFQKIKLDISRTLQKSNLILYPINHGKMETPFF--SLFRDVLSVAFSV---  292 (380)
Q Consensus       230 ~~~~-~----------~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~---  292 (380)
                      .+.. .          ..+..++++|+ +....      .......+.+|+..+++....+.  .....+..++|+|   
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v------~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~  253 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV------ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFL  253 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEE------EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEE------EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEE
Confidence            6532 1          23788999987 43321      12345678889887676655442  2345677888888   


Q ss_pred             ---cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEE
Q psy6984         293 ---DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIR  369 (380)
Q Consensus       293 ---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~  369 (380)
                         +++.+++...+..|++|+...+..+..+           ..      ...+......++++|||+++++...++.|+
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~-----------~~------~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF-----------KP------VRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEEEE-----------CC------SSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEEEE-----------cC------CCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence               4444444444558888886554433222           10      011223456899999998888888899999


Q ss_pred             EEEeee
Q psy6984         370 VWQVSV  375 (380)
Q Consensus       370 iw~~~~  375 (380)
                      +|++.-
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999864

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=1.4e-16  Score=142.09  Aligned_cols=260  Identities=12%  Similarity=0.068  Sum_probs=160.5

Q ss_pred             cceEEEEEccCCCEEEEEeCC---CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984          65 HFISDIVLSSDGNYALSGSWD---KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~  141 (380)
                      ..+..++|+|||++|+.....   ..|++||+.+++.......+......+.|+|||+.|+.++.++.+.+||+.+....
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~  115 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ  115 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence            346778999999998877543   47899999887765543333222334789999999999999999999998765443


Q ss_pred             EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEE-----cCCCc
Q psy6984         142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG-----GKDMN  216 (380)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~d~~  216 (380)
                      .... .+..      +.++++  .|+....+....+|.                 ..+.++|+++.++..     ..+..
T Consensus       116 ~~~~-~~~~------~~~~g~--~l~~~~~~~~~~~~~-----------------~~~~~spdg~~~~~~~~~~~~~~~~  169 (396)
T 3c5m_A          116 VIYT-VDEE------WKGYGT--WVANSDCTKLVGIEI-----------------LKRDWQPLTSWEKFAEFYHTNPTCR  169 (396)
T ss_dssp             EEEE-CCTT------EEEEEE--EEECTTSSEEEEEEE-----------------EGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred             EEEe-cccc------cCCCCC--EEEeccCCccccccc-----------------cccccCCCCcceeeeeeccCCCcce
Confidence            3322 2222      222221  233333333333332                 123467888877654     46678


Q ss_pred             EEEEECCCCcEEEEEEecCceEEEEeec-CcccceeeeeeeeeccccceEEEEcCCceeeeeeecc--ccceeEEEEeec
Q psy6984         217 AMLWDLNDGKHLHTLVHNDIITALCFSP-NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL--FRDVLSVAFSVD  293 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~  293 (380)
                      |++||+.+++..........+..+.|+| ++....+............+++++...++... +...  ...+..++|+||
T Consensus       170 l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          170 LIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPD  248 (396)
T ss_dssp             EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTT
T ss_pred             EEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCC
Confidence            9999999888766666777788999999 66533322110000011467888876554332 2222  224778899999


Q ss_pred             CCEEEEeeCC-----CcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEec-CCCEEEEEe----
Q psy6984         294 NRQIVSSSRD-----KTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST-DGQTLFAGY----  363 (380)
Q Consensus       294 ~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~g~----  363 (380)
                      |++|+.++.+     +.|++||+..+....+.         ..            + ... +.|+| ||++|++++    
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~---------~~------------~-~~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          249 GSAMAYVSYFKGQTDRVIYKANPETLENEEVM---------VM------------P-PCS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECTTTCCEEEEE---------EC------------C-SEE-EEEECSSSSEEEEEECCC-
T ss_pred             CCEEEEEecCCCCccceEEEEECCCCCeEEee---------eC------------C-CCC-CCccCCCCceEEEecCCcc
Confidence            9988777554     44888886443221111         00            0 012 78999 999888654    


Q ss_pred             ------------eCCeEEEEEee
Q psy6984         364 ------------SDNTIRVWQVS  374 (380)
Q Consensus       364 ------------~dg~v~iw~~~  374 (380)
                                  .++.|.+|++.
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             ---------CCCCCCEEEEEETT
T ss_pred             eeeccccccccCCCCcEEEEecc
Confidence                        24678888864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.73  E-value=1.6e-14  Score=126.44  Aligned_cols=264  Identities=9%  Similarity=0.087  Sum_probs=162.1

Q ss_pred             cceEEEEEccCCCEEEEEe---------CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---Cc--E
Q psy6984          65 HFISDIVLSSDGNYALSGS---------WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---KT--I  130 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~--v  130 (380)
                      ..+..+.+  ||++++...         .++.|++||+.+++... +    ..+..++|+|||+.++..+.+   +.  |
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34667777  888887542         25689999998876543 3    567889999999999877654   33  6


Q ss_pred             EEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC---------------------------CCeEEEEeCCCc
Q psy6984         131 KLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW---------------------------DRMVKVWNLTNC  183 (380)
Q Consensus       131 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------------------------d~~v~iwd~~~~  183 (380)
                      .+|++.++........ . . +..++|+|+++.  |+.++.                           ...|.+||+.++
T Consensus        88 ~~~~~~~g~~~~l~~~-~-~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~  162 (347)
T 2gop_A           88 WVADLETLSSKKILEA-K-N-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE  162 (347)
T ss_dssp             EEEETTTTEEEEEEEE-S-E-EEEEEECTTSSE--EEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred             EEEECCCCceEEEEcC-C-C-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence            6777665544333322 2 2 889999998753  444332                           257999999887


Q ss_pred             eeeEeeeCCccceEEEEEcCCCCEEEEEcCCC-------cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeee
Q psy6984         184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDM-------NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDIS  256 (380)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  256 (380)
                      +....+.. . .+..+.|+|+| +++++..+.       ...+|.+.+++....... ..+..  ++|++..........
T Consensus       163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~  236 (347)
T 2gop_A          163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPE  236 (347)
T ss_dssp             EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCS
T ss_pred             eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccc
Confidence            76223333 3 67889999999 777775542       334443334443322233 33333  388887543322111


Q ss_pred             e--eccccceEEEEcCCceeeeeeeccccceeE-EEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCc
Q psy6984         257 R--TLQKSNLILYPINHGKMETPFFSLFRDVLS-VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP  333 (380)
Q Consensus       257 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  333 (380)
                      .  ......+++++  .++.......+...+.. +.|+ ++ .+++++.++.+++| +..+....+           .  
T Consensus       237 ~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-----------~--  298 (347)
T 2gop_A          237 KKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-----------A--  298 (347)
T ss_dssp             SSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-----------E--
T ss_pred             cCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-----------e--
Confidence            0  00123566666  44433222233456775 8999 88 88899999999999 742211000           0  


Q ss_pred             ccccccCCCCCCceEEEEEecCCCEEEEEeeCCeE-EEEEee
Q psy6984         334 DVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTI-RVWQVS  374 (380)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v-~iw~~~  374 (380)
                              .+...+.+++|+|  +++++++.++.. ++|.+.
T Consensus       299 --------~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          299 --------KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             --------CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             --------cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence                    0123467889999  677777777765 888764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.3e-13  Score=127.67  Aligned_cols=327  Identities=10%  Similarity=0.073  Sum_probs=203.0

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC--CCceeeeecccCC
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA--AGKTTRRFEDHTK  107 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~h~~  107 (380)
                      .++++...+++|.++|........     .+. ....+..+.++|||+++++++.|+.|.+||+.  +.+.+.++... .
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~-----~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~  240 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKT-----VLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-S  240 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEE-----EEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-S
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEE-----EEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-C
Confidence            456777789999999986543221     122 12245689999999999999999999999996  77777776543 3


Q ss_pred             CeEEEEEe----CCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCC---------C-cCcEEEEEEccCCCCCEEEEEeCC
Q psy6984         108 DVLSVAFS----VDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDG---------H-SDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus       108 ~v~~~~~~----~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      ....++|+    |||++++++. .++.+.++|..+......+...         | ...+..+..++.+. .++++...+
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-~~vv~~~~~  319 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIVNVKET  319 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEEEETTT
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC-EEEEEecCC
Confidence            46789999    6999887665 5589999997665554433211         1 12467788877654 355666778


Q ss_pred             CeEEEEeCCCceee-EeeeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEEEEe-cCce---EEEE-eecC
Q psy6984         173 RMVKVWNLTNCKLK-INHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHTLVH-NDII---TALC-FSPN  245 (380)
Q Consensus       173 ~~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~i---~~~~-~~~~  245 (380)
                      |.|.++|..+.+.. ............+.|+|+|++++++. .++.|.++|+.+++.+..+.. ....   .... +.|+
T Consensus       320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~  399 (567)
T 1qks_A          320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT  399 (567)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCC
Confidence            99999998764321 11112234566788999999876654 678999999999987766644 2111   1222 3554


Q ss_pred             cccceeeeeeeeeccccceEEEEcCC-------ceeeeeeeccccceeEEEEeecCCEEEEeeC-------CCcEEEEec
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINH-------GKMETPFFSLFRDVLSVAFSVDNRQIVSSSR-------DKTIKLWNT  311 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~v~iw~~  311 (380)
                      +....    ......+..+.+++...       .+....+......-.-+..+|++++|.....       ..+|.++|+
T Consensus       400 ~g~v~----~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          400 FGPVW----ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             TEEEE----EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             CCcEE----EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence            32111    11122346677888765       3333333322223345778999998887553       358999986


Q ss_pred             ccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-----eCCeEEEEEee
Q psy6984         312 LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-----SDNTIRVWQVS  374 (380)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-----~dg~v~iw~~~  374 (380)
                      .+... .  +..  ...+.+...... .....+..+..+.|+|+|+.+....     .++.|.|+|..
T Consensus       476 ~~~~~-~--g~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~  537 (567)
T 1qks_A          476 KAMTG-D--GSD--PEFKTLPIAEWA-GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  537 (567)
T ss_dssp             GGCCC-S--SSC--CCEEEECHHHHH-TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             Ccccc-c--ccC--CCcEEecccccc-ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC
Confidence            43200 0  000  000111000000 0011234567899999999877653     37899998854

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=2.7e-15  Score=143.18  Aligned_cols=173  Identities=16%  Similarity=0.118  Sum_probs=123.3

Q ss_pred             CCcceEEEEEccCCCEEEEEeCC----------CcEEEEECCC------Cceeeeec-ccCCCeEEEEEeCCCCEEEEEe
Q psy6984          63 HSHFISDIVLSSDGNYALSGSWD----------KTLRLWDLAA------GKTTRRFE-DHTKDVLSVAFSVDNRQIVSSS  125 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~  125 (380)
                      |...+..++|+|||++|+.++.+          ..|++||+.+      ++. ..+. .+...+..++|+|||+.|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence            66778899999999999998877          5899999987      444 4444 5556788899999999999877


Q ss_pred             CC--------CcEEEEeCC-Cc--ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEeeeCC
Q psy6984         126 RD--------KTIKLWNTL-AH--CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINHSGH  192 (380)
Q Consensus       126 ~d--------~~v~iwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~  192 (380)
                      .+        ..|.+||+. ++  .....+...+...+..+.|+|+++  +++++..++  .|.+||+.+.+.......+
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~--l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS--LIVATDRTGWWNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC--EEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe--EEEEECCCCCeEEEEEECCCCceeeccccc
Confidence            55        379999987 34  133333334566789999999876  677777788  6667776565544333332


Q ss_pred             ccc--------eEEEEEcCCCCEEEEEcCCCcEEEE--ECCCCcEEEEEE-ecCceEEE
Q psy6984         193 TGY--------LNTVTVSPDGSLCASGGKDMNAMLW--DLNDGKHLHTLV-HNDIITAL  240 (380)
Q Consensus       193 ~~~--------i~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~-~~~~i~~~  240 (380)
                      ...        +..++++|+++++++++. +.+++|  |+..++ +..+. +...+..+
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~  341 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT  341 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred             ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence            221        457889999999999998 999999  655555 44443 33445544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=1.1e-14  Score=128.13  Aligned_cols=277  Identities=12%  Similarity=0.094  Sum_probs=179.4

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCCCCeEEEee----------CCCeEEEeecCCCCCCcccccc-cccCCCcceEEEE
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCS----------RDNTLIIWKLTRDDTNYGVPQK-RLKGHSHFISDIV   71 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~----------~dg~v~vw~~~~~~~~~~~~~~-~~~~h~~~v~~~~   71 (380)
                      .++.++..++..+.++  .++++|+ +++++.++          .+++|.+||.........++.. .-..+......++
T Consensus        38 ~~t~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~  114 (361)
T 2oiz_A           38 YTNGKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFR  114 (361)
T ss_dssp             TTTCCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEE
T ss_pred             CCCCeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEE
Confidence            3455667777776666  8999998 67777765          3678999997643221111110 0001223466799


Q ss_pred             EccCCCEEEEEeC--CCcEEEEECCCCceeee-ecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEE-Eee-
Q psy6984          72 LSSDGNYALSGSW--DKTLRLWDLAAGKTTRR-FEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFT-IVE-  145 (380)
Q Consensus        72 ~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~-~~~-  145 (380)
                      ++|||++|+++..  ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|+........ ... 
T Consensus       115 ~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~  192 (361)
T 2oiz_A          115 QTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS  192 (361)
T ss_dssp             ECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC
T ss_pred             ECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc
Confidence            9999999998864  57899999999988777 542 2 22335667766 677888999999998864422211 110 


Q ss_pred             ----CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE--eee--C----Cc----cceEEEEEcCCCCEEE
Q psy6984         146 ----DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI--NHS--G----HT----GYLNTVTVSPDGSLCA  209 (380)
Q Consensus       146 ----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~--~----~~----~~i~~~~~~~~~~~l~  209 (380)
                          ......+ .+.+.+++.  .++..+.++.|.++|+.......  ...  .    +.    .....++++|+++.+.
T Consensus       193 ~~~~~~~~~~~-~~~~~~~g~--~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly  269 (361)
T 2oiz_A          193 KQMFSVKDDPI-FIAPALDKD--KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY  269 (361)
T ss_dssp             CCCSCTTTSCB-CSCCEECSS--EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred             cceEcCCCCce-EEEecccCC--EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence                1111111 112233332  34455678899999986543221  110  0    00    1112268999988776


Q ss_pred             EEcC-----------CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc--eeee
Q psy6984         210 SGGK-----------DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG--KMET  276 (380)
Q Consensus       210 ~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  276 (380)
                      ++..           ...|.+||+.+++.+..+.... +..++|+|++.+....      .. +.+.+|+..++  +...
T Consensus       270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~------n~-~~v~v~D~~t~~l~~~~  341 (361)
T 2oiz_A          270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL------DG-GNVNVYDISQPEPKLLR  341 (361)
T ss_dssp             EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEE------CS-SCEEEEECSSSSCEEEE
T ss_pred             EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEe------CC-CeEEEEECCCCcceeeE
Confidence            6543           3589999999999999887777 9999999998753321      12 78999999998  7776


Q ss_pred             eeeccccceeEEEEeecCC
Q psy6984         277 PFFSLFRDVLSVAFSVDNR  295 (380)
Q Consensus       277 ~~~~~~~~v~~~~~s~~~~  295 (380)
                      .+.........++++|+|+
T Consensus       342 ~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          342 TIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EETTSCSSEEEEEECCCSC
T ss_pred             EeccCCCCcEEEEecCCCC
Confidence            6555666678899999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=2e-12  Score=110.47  Aligned_cols=278  Identities=8%  Similarity=-0.015  Sum_probs=184.3

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRL   90 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   90 (380)
                      .+..+...+.+|...++ +.++++...++.|.+|+.. ...    .......+...+..++++++|++.++...++.|..
T Consensus         9 ~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKI----TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGR   82 (299)
T ss_dssp             ECCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCE----EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             cCCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCe----EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence            45566778999999987 5677766667899999865 211    11111223456889999999998888777889999


Q ss_pred             EECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          91 WDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        91 wd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      ||.. ++... .+......+.++++++++..+++...++.+..||. .+.............+.++++.+++  .++++.
T Consensus        83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~  158 (299)
T 2z2n_A           83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN--ALWFTE  158 (299)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS--CEEEEE
T ss_pred             ECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC--CEEEEe
Confidence            9986 33322 22224456889999999988888877889999987 4333322222334568889998865  356666


Q ss_pred             eCCCeEEEEeCCCceeeEe-eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe---cCceEEEEeecC
Q psy6984         170 GWDRMVKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH---NDIITALCFSPN  245 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~~~~  245 (380)
                      ..++.|..||. +.+.... .......+..++++++|+++++...++.|.+||. +++... +..   ...+..++++++
T Consensus       159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECST
T ss_pred             CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCC
Confidence            66789999998 5544332 2334456889999999998887777889999999 665432 322   255778888887


Q ss_pred             cccceeeeeeeeeccccceEEEEcCCceeeee-eeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         246 RSFQKIKLDISRTLQKSNLILYPINHGKMETP-FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      +.....      ......+..++. .+..... .......+.++++ ++++.+++.. .+.+..++
T Consensus       236 g~l~v~------~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~  292 (299)
T 2z2n_A          236 IDLWFT------EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT  292 (299)
T ss_dssp             TCEEEE------ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred             CCEEEe------ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence            643211      112455667776 3332221 1223356788999 8888777655 44454444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.68  E-value=5.2e-12  Score=107.80  Aligned_cols=278  Identities=9%  Similarity=0.008  Sum_probs=181.9

Q ss_pred             CCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984          63 HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~  141 (380)
                      +...+.+++++++|+..++...++.|.+||.. ++..... ..+...+.++++++++...++...++.|..||.... ..
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~   90 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IK   90 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EE
Confidence            34568899999999988777768899999988 5543322 234567899999999998888777888999986532 22


Q ss_pred             EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                      ..........+.++++.+++  .++++...++.|..||. +.+... ........+..++++++|+++++...++.|..|
T Consensus        91 ~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  167 (299)
T 2z2n_A           91 EYTLPNPDSAPYGITEGPNG--DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI  167 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEeCCCcCCCceeeEECCCC--CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence            22212234568889998865  36666666789999998 443332 223344568999999999988888778899999


Q ss_pred             ECCCCcEEEEEE--ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee-eeccccceeEEEEeecCCEE
Q psy6984         221 DLNDGKHLHTLV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP-FFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       221 d~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l  297 (380)
                      |. +++......  ....+..+++.+++.....      ......+..++. .++.... .......+.+++++++|+.+
T Consensus       168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~------~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  239 (299)
T 2z2n_A          168 TE-SGDITEFKIPTPASGPVGITKGNDDALWFV------EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLW  239 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE------ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             cC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE------ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEE
Confidence            98 665443211  2344678888877643211      112345666766 4443321 12233568899999999977


Q ss_pred             EEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       298 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ++...++.|..|+. .+ .+..+..                  ......+.++++ ++|+++++.. .+.+..++...
T Consensus       240 v~~~~~~~i~~~d~-~g-~~~~~~~------------------~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          240 FTEWGANKIGRLTS-NN-IIEEYPI------------------QIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             EEETTTTEEEEEET-TT-EEEEEEC------------------SSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             EeccCCceEEEECC-CC-ceEEEeC------------------CCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            77667788999975 22 1111100                  011223567888 8998877654 56666666643

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=9.3e-14  Score=120.63  Aligned_cols=262  Identities=10%  Similarity=0.030  Sum_probs=172.5

Q ss_pred             CCCeEEEeecCCCCCCcccccc-cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEe
Q psy6984          37 RDNTLIIWKLTRDDTNYGVPQK-RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS  115 (380)
Q Consensus        37 ~dg~v~vw~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  115 (380)
                      .+++|.++|.........+... .-.........+.+. +++..++...++.|.+||..+++.+.++. .......++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence            4889999997653322111100 001122345667764 34455556667899999999999988874 34668899999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCC----cCcEEEEEEccCCCCCEEEEEe-CCCeEEEEeCCCceeeEeee
Q psy6984         116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGH----SDWVSCVRFSPNHQNPIIVSAG-WDRMVKVWNLTNCKLKINHS  190 (380)
Q Consensus       116 ~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~  190 (380)
                      +++...++...++.|.+||..+......+..+.    ......+++ .+  ..++++.. .++.|.++|+.+.+......
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            998544444488999999987765544433222    113445666 22  22344433 48899999999887765554


Q ss_pred             CCccceEEEEEcCCCCEEEEEcCC----------CcEEEEECCCCcEEEEEEe--cCceEEEEeecCcccceeeeeeeee
Q psy6984         191 GHTGYLNTVTVSPDGSLCASGGKD----------MNAMLWDLNDGKHLHTLVH--NDIITALCFSPNRSFQKIKLDISRT  258 (380)
Q Consensus       191 ~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~  258 (380)
                      .. .....+.++|+|+++++...+          +.|.++|..+++....+..  ...+..++++|++......      
T Consensus       170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~------  242 (328)
T 3dsm_A          170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI------  242 (328)
T ss_dssp             CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE------
T ss_pred             cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE------
Confidence            32 345678899999987777654          7899999999887766654  3468899999987643221      


Q ss_pred             ccccceEEEEcCCceeee-eeecc-ccceeEEEEee-cCCEEEEe----eCCCcEEEEecc
Q psy6984         259 LQKSNLILYPINHGKMET-PFFSL-FRDVLSVAFSV-DNRQIVSS----SRDKTIKLWNTL  312 (380)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~s~-~~~~l~s~----~~dg~v~iw~~~  312 (380)
                        ...+.+++..+++... .+... ......++++| +++.+++.    ..++.|.+|+..
T Consensus       243 --~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          243 --NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             --SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             --ccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence              1167788887776532 22221 34577899999 55666665    568899999875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.65  E-value=1.1e-13  Score=116.66  Aligned_cols=237  Identities=9%  Similarity=0.012  Sum_probs=158.9

Q ss_pred             ceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          66 FISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      ...+++++++|++++ +...++.|.+||..+.........+...+.+++++++++.+++.. ++.|.+||....... ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence            567899999999777 447788999999765543322223334678899999999666665 889999997654332 22


Q ss_pred             eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         145 EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       145 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      .......+..+++.+++.  ++++...++.|.+|+..+.............+..++++|+|+++++...++.|.+||...
T Consensus       103 ~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             ecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            222335688999998653  666666788999998765443332223334678899999999888888889999999877


Q ss_pred             CcEEEEEEe-cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984         225 GKHLHTLVH-NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD  303 (380)
Q Consensus       225 ~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  303 (380)
                      ......... ...+..+++++++....      .....+.+..++................+.+++++|+|+.+++...+
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v------~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVDEAGTVYV------TEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEE------EETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             CceEeecccCCCCceEEEECCCCCEEE------EECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence            654433222 25577888888763211      11234567777765543322222223567899999999988888889


Q ss_pred             CcEEEEecc
Q psy6984         304 KTIKLWNTL  312 (380)
Q Consensus       304 g~v~iw~~~  312 (380)
                      +.|++++..
T Consensus       255 ~~v~~~~~~  263 (270)
T 1rwi_B          255 DRVVKLTSL  263 (270)
T ss_dssp             TEEEEECCC
T ss_pred             CEEEEEcCC
Confidence            999999753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=2.1e-13  Score=131.02  Aligned_cols=246  Identities=10%  Similarity=0.060  Sum_probs=159.5

Q ss_pred             CCCcceEEEEEccCCCEEEEEeCCC-----cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCc-------
Q psy6984          62 GHSHFISDIVLSSDGNYALSGSWDK-----TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT-------  129 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~-------  129 (380)
                      +|...+..+.|||||++|+.+..++     .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4555688999999999998776543     8999999998876643222 23667999999999999888766       


Q ss_pred             ---------EEEEeCCCcce---EEEeeCCCcCcEEEEEEccCCCCCEEEEEeC-----CCeEEEEeCCC------ce-e
Q psy6984         130 ---------IKLWNTLAHCK---FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW-----DRMVKVWNLTN------CK-L  185 (380)
Q Consensus       130 ---------v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~------~~-~  185 (380)
                               |.+|++.+...   .......+...+..+.|+|+++.  |+..+.     +..|.+||+.+      +. .
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~  278 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEEEEECcccccccCCccc
Confidence                     99999866442   22222234556788999998763  443332     57899999976      32 2


Q ss_pred             eEeeeCCccceEEEEEcCCCCEEEEEcCC----CcEEEEECCCCcE---EEEEEecC--ceEEEEeecCcccceeeeeee
Q psy6984         186 KINHSGHTGYLNTVTVSPDGSLCASGGKD----MNAMLWDLNDGKH---LHTLVHND--IITALCFSPNRSFQKIKLDIS  256 (380)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~---~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~  256 (380)
                      ...+..+...+.. .++|+|+.|+..+.+    ..|.+||+.++..   ...+.+..  .+..++|++++.+....    
T Consensus       279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~----  353 (710)
T 2xdw_A          279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY----  353 (710)
T ss_dssp             CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE----
T ss_pred             eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE----
Confidence            3334445444444 478888877665543    4699999987641   22233333  57778888554322111    


Q ss_pred             eeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe-e---CCCcEEEEecccce
Q psy6984         257 RTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS-S---RDKTIKLWNTLAHC  315 (380)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~---~dg~v~iw~~~~~~  315 (380)
                      .......+++++...++....+..+...+..++++|+++.++.. +   ..++|+.||+.++.
T Consensus       354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            11122346677775565444444445567888999998766532 2   35789999876544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.64  E-value=1.3e-13  Score=118.04  Aligned_cols=229  Identities=12%  Similarity=0.056  Sum_probs=156.6

Q ss_pred             ccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          60 LKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      +..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++|+|+++++...++.|.+||..++
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g  100 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG  100 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence            344556678999999998 7788888999999999877  5566667778999999999998888777889999997554


Q ss_pred             ceEEEee--CC-CcCcEEEEEEccCCCCCEEEE----Ee-------------CCCeEEEEeCCCceeeEeeeCCccceEE
Q psy6984         139 CKFTIVE--DG-HSDWVSCVRFSPNHQNPIIVS----AG-------------WDRMVKVWNLTNCKLKINHSGHTGYLNT  198 (380)
Q Consensus       139 ~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s----~~-------------~d~~v~iwd~~~~~~~~~~~~~~~~i~~  198 (380)
                      .......  .. ....+..+++.|++.  ++++    +.             ..+.|..++.. .+. .....+...++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~g  176 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNG  176 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCcc
Confidence            4332221  11 112356788988764  5665    22             13456666655 333 233455667889


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEECC-CCcE---EEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984         199 VTVSPDGSLCASGGKDMNAMLWDLN-DGKH---LHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK  273 (380)
Q Consensus       199 ~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (380)
                      ++|+|+|+.+++.+.++.|++||+. +++.   ...+ .....+..+++++++.....       . .+.+.+|+.. ++
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~-------~-~~~v~~~~~~-g~  247 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS-------A-GDGVHVLTPD-GD  247 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE-------E-TTEEEEECTT-SC
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE-------c-CCeEEEECCC-CC
Confidence            9999999988888888999999986 4543   1222 12334567778877653211       1 4567788775 54


Q ss_pred             eeeeeeccccceeEEEE-eecCCEEEEeeCCC
Q psy6984         274 METPFFSLFRDVLSVAF-SVDNRQIVSSSRDK  304 (380)
Q Consensus       274 ~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg  304 (380)
                      ....+..... +.+++| +|+++.|+.++.++
T Consensus       248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             EEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            4444444444 889999 58999888888765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=1.9e-13  Score=119.57  Aligned_cols=256  Identities=14%  Similarity=0.151  Sum_probs=158.3

Q ss_pred             cceEEEEeCCCCCCeEEEee---------CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC-
Q psy6984          17 GWVTQIATNPKFPDTILSCS---------RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK-   86 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~---------~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-   86 (380)
                      ..+....+  + ++.++...         .++.|.+|++.....      ..+    ..+..+.|+|||++|+..+.++ 
T Consensus        15 ~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~------~~l----~~~~~~~~SpDg~~la~~~~~~~   81 (347)
T 2gop_A           15 AYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNAR------RFI----ENATMPRISPDGKKIAFMRANEE   81 (347)
T ss_dssp             CEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCCE------EEE----ESCEEEEECTTSSEEEEEEEETT
T ss_pred             EEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCce------EEc----ccCCCeEECCCCCEEEEEEeccC
Confidence            45666666  3 45555432         256788888764321      112    4578899999999999877542 


Q ss_pred             ----cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---------------------------CcEEEEeC
Q psy6984          87 ----TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---------------------------KTIKLWNT  135 (380)
Q Consensus        87 ----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---------------------------~~v~iwd~  135 (380)
                          .|++||+.+++.......+ . +..++|+|||+.|+.++.+                           ..|.+||+
T Consensus        82 ~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           82 KKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             CCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence                4888899887766554433 3 8999999999998887642                           56888988


Q ss_pred             CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-------eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE
Q psy6984         136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-------MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC  208 (380)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  208 (380)
                      .++.....+..  . .+..+.|+|++   +++++..+.       ...+|.+.+++... +..+ ..+..+  +|+|++|
T Consensus       160 ~~~~~~~~l~~--~-~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-l~~~-~~~~~~--spdg~~l  229 (347)
T 2gop_A          160 ESEEVIEEFEK--P-RFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWEDGKEEK-MFEK-VSFYAV--DSDGERI  229 (347)
T ss_dssp             TTTEEEEEEEE--E-TTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEETTEEEE-EEEE-ESEEEE--EECSSCE
T ss_pred             CCCeEEeeecC--C-CcccccCCCCe---EEEEEecccccccccccccEEEeCCCceEE-eccC-cceeeE--CCCCCEE
Confidence            76554122222  2 56788999976   566665432       33444333444322 2223 444444  9999988


Q ss_pred             EEEcCC--------CcEEEEECCCCcEEEEEE-ecCceEE-EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee
Q psy6984         209 ASGGKD--------MNAMLWDLNDGKHLHTLV-HNDIITA-LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF  278 (380)
Q Consensus       209 ~~~~~d--------~~i~i~d~~~~~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (380)
                      +.++.+        ..|++||  +++...... +...+.. +.|+ ++ ....      ...++...+| +..++. ..+
T Consensus       230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~------~~~~~~~~l~-~~~g~~-~~~  297 (347)
T 2gop_A          230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT------LFEEGSVNLY-IWDGEI-KPI  297 (347)
T ss_dssp             EEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE------EEETTEEEEE-EESSSE-EEE
T ss_pred             EEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE------EecCCcEEEE-EcCCce-EEE
Confidence            877644        4688888  554333222 3455665 7887 65 2211      1123455666 554443 334


Q ss_pred             eccccceeEEEEeecCCEEEEeeCCCcE-EEEec
Q psy6984         279 FSLFRDVLSVAFSVDNRQIVSSSRDKTI-KLWNT  311 (380)
Q Consensus       279 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v-~iw~~  311 (380)
                      ......+.+++|+|  ..+++++.++.. .+|..
T Consensus       298 ~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          298 AKGRHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            44466788999999  677777777665 77754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=2.5e-12  Score=111.88  Aligned_cols=230  Identities=9%  Similarity=0.041  Sum_probs=157.3

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-   85 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-   85 (380)
                      +....+.++...+..++|.|+ +.+++++..++.|.+|+.......     .....+...+.+++++++|+++++...+ 
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~i~~~~dg~l~v~~~~~~  108 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIK-----RPFVSHKANPAAIKIHKDGRLFVCYLGDF  108 (333)
T ss_dssp             EEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEE-----EEEECSSSSEEEEEECTTSCEEEEECTTS
T ss_pred             ceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEE-----EEeeCCCCCcceEEECCCCcEEEEeCCCC
Confidence            344567778788899999987 567778888999999987543211     1111345679999999999988877766 


Q ss_pred             ---CcEEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984          86 ---KTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        86 ---~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~  154 (380)
                         +.|.+||..+++....+.  .+...+.+++++|+|+.+++...      .+.|..+|..+........  ....+..
T Consensus       109 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~  186 (333)
T 2dg1_A          109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANG  186 (333)
T ss_dssp             SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEE
T ss_pred             CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCCcccc
Confidence               689999998876553332  23456899999999988877654      2456666644333222211  2234778


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCC-ceeeE--------eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKLKI--------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  225 (380)
                      ++++|+++. ++++...++.|.+||+.. .....        ...++ ..+..++++++|+++++...++.|.+||. .+
T Consensus       187 i~~~~dg~~-l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g  263 (333)
T 2dg1_A          187 IALSTDEKV-LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG  263 (333)
T ss_dssp             EEECTTSSE-EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TS
T ss_pred             eEECCCCCE-EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CC
Confidence            999997642 445556678999999853 22111        11122 36788999999998888878899999998 56


Q ss_pred             cEEEEEEecC-------ceEEEEeecCcc
Q psy6984         226 KHLHTLVHND-------IITALCFSPNRS  247 (380)
Q Consensus       226 ~~~~~~~~~~-------~i~~~~~~~~~~  247 (380)
                      +.+..+....       .+..++|+|++.
T Consensus       264 ~~~~~~~~~~~~~g~~~~~~~~~~~~dg~  292 (333)
T 2dg1_A          264 YPIGQILIPGRDEGHMLRSTHPQFIPGTN  292 (333)
T ss_dssp             CEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             CEEEEEEcCCCccccccCcceEEECCCCC
Confidence            6666654432       478888888753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=5.6e-14  Score=134.67  Aligned_cols=274  Identities=10%  Similarity=-0.008  Sum_probs=168.1

Q ss_pred             ccCCCEEEEEeCCC-----cEEEEECCCCceeeeec------ccCCCeEEEEEeCCCCEEE-----EEeCCCcEEEEeCC
Q psy6984          73 SSDGNYALSGSWDK-----TLRLWDLAAGKTTRRFE------DHTKDVLSVAFSVDNRQIV-----SSSRDKTIKLWNTL  136 (380)
Q Consensus        73 ~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~-----s~~~d~~v~iwd~~  136 (380)
                      +|+|++++-...++     .|.+.+...++....+.      +|...+..++|||||+++|     .|+.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47899888766543     35555655554333322      3445688999999999998     33445689999987


Q ss_pred             CcceEEEeeCCCcCcE--EEEEEccCCCCCEEEEEeCCCe-------------EEEEeCCCce----eeEeeeCCccceE
Q psy6984         137 AHCKFTIVEDGHSDWV--SCVRFSPNHQNPIIVSAGWDRM-------------VKVWNLTNCK----LKINHSGHTGYLN  197 (380)
Q Consensus       137 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~d~~-------------v~iwd~~~~~----~~~~~~~~~~~i~  197 (380)
                      ++....   ..+...+  ..++|+|+++  .|+.++.|..             |++|++.+..    ++.....+...+.
T Consensus       156 tg~~~~---~~~~~~~~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~  230 (695)
T 2bkl_A          156 SGEWSK---VDVIEGGKYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL  230 (695)
T ss_dssp             TCCBCS---SCCBSCCTTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred             CCCCcC---CcccCcccccceEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence            765420   1111222  5789999876  5666666655             9999998764    3333344556788


Q ss_pred             EEEEcCCCCEEEEEcCCC----cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984         198 TVTVSPDGSLCASGGKDM----NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK  273 (380)
Q Consensus       198 ~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (380)
                      .+.++|||++++..+.++    .|++++..+++......+........+ +++. ..+.  .........++++++.++.
T Consensus       231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~--s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVL--TDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEE--ECTTCTTCEEEEEBTTBCS
T ss_pred             EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEE--ECCCCCCCEEEEEeCCCCC
Confidence            999999999988877666    778887766554444444444455545 4444 2111  1111234667778876654


Q ss_pred             e--eeeeecc--ccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEE
Q psy6984         274 M--ETPFFSL--FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLS  349 (380)
Q Consensus       274 ~--~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (380)
                      .  ...+..+  ...+..++|+ ++..+++...|+..++|...         ..+. ....+.        ......+..
T Consensus       307 ~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~---------~~g~-~~~~l~--------~~~~~~v~~  367 (695)
T 2bkl_A          307 RASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT---------LKGK-PVRTVQ--------LPGVGAASN  367 (695)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE---------TTCC-EEEECC--------CSSSSEECC
T ss_pred             ccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe---------CCCC-eeEEec--------CCCCeEEEE
Confidence            2  1233333  2346778887 77788888999999998542         1111 111111        011234556


Q ss_pred             EEEecCCCEEEEEe----eCCeEEEEEee
Q psy6984         350 LAWSTDGQTLFAGY----SDNTIRVWQVS  374 (380)
Q Consensus       350 ~~~s~dg~~l~~g~----~dg~v~iw~~~  374 (380)
                      ++++||++.|+...    ..+.|.+||+.
T Consensus       368 ~~~s~d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          368 LMGLEDLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             CBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred             eecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            77899998776322    34678888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=4.7e-11  Score=101.88  Aligned_cols=274  Identities=9%  Similarity=0.011  Sum_probs=177.3

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE
Q psy6984          64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  142 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~  142 (380)
                      ...+.++.+.++|+..++...++.|.+||.. ++... .+......+.++++++++...++...++.|..+|.. +....
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            4567899999999988887778999999987 55443 222334578899999999988877778889999876 33322


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee-EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK-INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                      .........+.++++.+++.  ++++...++.|..+|.. .+.. .........+..++++++|+++++...++.|..+|
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            22222335688899987653  66666667899999987 4433 22233345789999999999877777788999999


Q ss_pred             CCCCcEEEEEEe---cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee-eeeccccceeEEEEeecCCEE
Q psy6984         222 LNDGKHLHTLVH---NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET-PFFSLFRDVLSVAFSVDNRQI  297 (380)
Q Consensus       222 ~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l  297 (380)
                      . +++... +..   ...+..+++.+++.....      ......+..++. .++... ........+.+++++++|+.+
T Consensus       174 ~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~------~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~  244 (300)
T 2qc5_A          174 N-TGKLEE-YPLPTNAAAPVGITSGNDGALWFV------EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIW  244 (300)
T ss_dssp             T-TCCEEE-EECSSTTCCEEEEEECTTSSEEEE------ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEE
T ss_pred             C-CCcEEE-eeCCCCCCCcceEEECCCCCEEEE------ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEE
Confidence            8 555433 221   234677888776543211      112334666665 333222 122234567899999999977


Q ss_pred             EEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       298 ~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      ++...++.|..|+. .+. +..+.         ..         .....+.+++..++|+++++.. + .|..++.
T Consensus       245 v~~~~~~~i~~~~~-~g~-~~~~~---------~~---------~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          245 FTEWGANQIGRITN-DNT-IQEYQ---------LQ---------TENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EEETTTTEEEEECT-TSC-EEEEE---------CC---------STTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             EeccCCCeEEEECC-CCc-EEEEE---------CC---------ccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            77666788998875 221 11110         00         0112245788899999777554 4 5655554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=1.9e-12  Score=110.67  Aligned_cols=221  Identities=15%  Similarity=0.165  Sum_probs=154.3

Q ss_pred             EecCcccceEEEEeCCCCCC-eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPD-TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~-~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      .+..+......++|+|+ ++ +++++..++.|..|+....       ...+..+...+.+++++++|+++++...++.|.
T Consensus        22 ~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ-------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE   93 (296)
T ss_dssp             EEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC-------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred             EEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC-------eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence            44456677889999998 45 7888888999999987643       122334556789999999999888877778999


Q ss_pred             EEECCCCceeeeeccc----CCCeEEEEEeCCCCEEEEEeC-----------------CCcEEEEeCCCcceEEEeeCCC
Q psy6984          90 LWDLAAGKTTRRFEDH----TKDVLSVAFSVDNRQIVSSSR-----------------DKTIKLWNTLAHCKFTIVEDGH  148 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~-----------------d~~v~iwd~~~~~~~~~~~~~~  148 (380)
                      +||..+++........    ...+.+++++|+|+.+++.+.                 .+.|..++.. +. ..... .+
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~-~~  170 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI-RD  170 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE-CC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee-cC
Confidence            9999887755433221    124567999999998887321                 3455555543 22 22222 34


Q ss_pred             cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC-Ccee---eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT-NCKL---KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       149 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      ......++|+|+++  .+++.+.++.|.+|++. ++++   ...+..+...+..++++++|+++++.  ++.|.+||.. 
T Consensus       171 ~~~~~gi~~s~dg~--~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-  245 (296)
T 3e5z_A          171 RVKPNGLAFLPSGN--LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-  245 (296)
T ss_dssp             CSSEEEEEECTTSC--EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred             CCCCccEEECCCCC--EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence            45678899999865  45777778999999986 3333   11223345567789999999977666  7899999986 


Q ss_pred             CcEEEEEEecCceEEEEee-cCcc
Q psy6984         225 GKHLHTLVHNDIITALCFS-PNRS  247 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~-~~~~  247 (380)
                      ++.+..+..+..+.+++|. |++.
T Consensus       246 g~~~~~~~~~~~~~~~~f~~~d~~  269 (296)
T 3e5z_A          246 GDELGRVLTPQTTSNLCFGGPEGR  269 (296)
T ss_dssp             SCEEEEEECSSCCCEEEEESTTSC
T ss_pred             CCEEEEEECCCCceeEEEECCCCC
Confidence            7777666554448888884 6554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=1.9e-12  Score=109.26  Aligned_cols=214  Identities=9%  Similarity=-0.003  Sum_probs=152.4

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT-KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVS  153 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~  153 (380)
                      .+++|++++.|+.|.+||.++++.+.++..+. ..+.+++++|+|+.++  +.++.|..||. ++........+....+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            36789999999999999999999999988765 4688999999999888  45778999997 55555544433334678


Q ss_pred             EEEEccCCCCCEEEEEeC-CCeEEEEeCCCceeeEeee------CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         154 CVRFSPNHQNPIIVSAGW-DRMVKVWNLTNCKLKINHS------GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      ++.+.+++.  ++++.+. ++.|..+|. +++......      .+......+++.++|+++++...++.|..||.. ++
T Consensus        81 ~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           81 TARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             ccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            888888764  6777666 777877876 444433332      122244556789999999999999999999998 99


Q ss_pred             EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc------ccceeEEEEeecCCEEEEe
Q psy6984         227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL------FRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~  300 (380)
                      .+..+.....+..+...+++......      ...+.+..++..+++..-.+...      ...+..++..++|..+++.
T Consensus       157 ~~w~~~~~~~~~~~~~~~~g~~~v~~------~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          157 LLNSVKLSGTPFSSAFLDNGDCLVAC------GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEEECSSCCCEEEECTTSCEEEEC------BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEEEEECCCCccceeEcCCCCEEEEe------CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            98888766666666666665443221      12344666666666654443321      1236678888899988876


Q ss_pred             e
Q psy6984         301 S  301 (380)
Q Consensus       301 ~  301 (380)
                      .
T Consensus       231 ~  231 (276)
T 3no2_A          231 W  231 (276)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.60  E-value=6.3e-11  Score=101.07  Aligned_cols=278  Identities=8%  Similarity=0.014  Sum_probs=180.5

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +......+.+|...++ +.++++...++.|.+|+.. ....    ...+..+...+..+++.+++++.++...++.|..|
T Consensus        15 ~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~   88 (300)
T 2qc5_A           15 LSIPDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIK----EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKL   88 (300)
T ss_dssp             CSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEE----EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             cCCCCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceE----EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEE
Confidence            4455668899999887 5677776678999999865 2111    11122334568899999999988877778899999


Q ss_pred             ECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe
Q psy6984          92 DLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG  170 (380)
Q Consensus        92 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  170 (380)
                      |.. ++... ........+.++++++++..+++...++.|..+|.. +.............+.++++.+++.  ++++..
T Consensus        89 d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~  164 (300)
T 2qc5_A           89 SKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA--LWFTEN  164 (300)
T ss_dssp             CTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS--EEEEET
T ss_pred             CCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC--EEEEec
Confidence            987 55432 222234568899999999988887778889999876 3332222222345678899988654  566666


Q ss_pred             CCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE--ecCceEEEEeecCcc
Q psy6984         171 WDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV--HNDIITALCFSPNRS  247 (380)
Q Consensus       171 ~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~~~~~~~~~  247 (380)
                      .++.|..+|. +.+... ....+...+..++++++|+++++....+.|.+||. +++......  ....+..+++.+++.
T Consensus       165 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          165 QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE  242 (300)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence            6788999998 444332 22234456889999999988887777888999998 554433221  234567888887764


Q ss_pred             cceeeeeeeeeccccceEEEEcCCceeee-eeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         248 FQKIKLDISRTLQKSNLILYPINHGKMET-PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      ....      ....+.+..++.. ++... ........+.+++++++|+.+++.. . .|..++
T Consensus       243 l~v~------~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          243 IWFT------EWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             EEEE------ETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred             EEEe------ccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence            2211      1123456666653 33221 1222234577889999988766654 3 554443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.59  E-value=1.4e-11  Score=114.09  Aligned_cols=301  Identities=14%  Similarity=0.110  Sum_probs=188.8

Q ss_pred             ceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecC--CCCCCcccccccccCCCcceEEEEEc----cCC
Q psy6984           3 TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLT--RDDTNYGVPQKRLKGHSHFISDIVLS----SDG   76 (380)
Q Consensus         3 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~   76 (380)
                      .++.++..++.. ...+..+.++|+ ++++++++.|+.|.+||+.  ....     ...+... .....++|+    |||
T Consensus       184 ~~t~~v~~~i~~-g~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~-----v~~i~~G-~~P~~ia~s~~~~pDG  255 (567)
T 1qks_A          184 GSTYEIKTVLDT-GYAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTT-----VAEIKIG-SEARSIETSKMEGWED  255 (567)
T ss_dssp             TTTCCEEEEEEC-SSCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCE-----EEEEECC-SEEEEEEECCSTTCTT
T ss_pred             CCCCeEEEEEeC-CCCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcE-----eEEEecC-CCCceeEEccccCCCC
Confidence            445556666653 235668999998 6888889999999999984  2211     1122221 235689999    699


Q ss_pred             CEEEEEeC-CCcEEEEECCCCceeeeecc----------cCC-CeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEE
Q psy6984          77 NYALSGSW-DKTLRLWDLAAGKTTRRFED----------HTK-DVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        77 ~~l~s~~~-d~~i~vwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      ++++++.. ++.|.|+|..+.+.+..+..          |.. .+..+..++++..++ +...+|.|.++|......+..
T Consensus       256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v  335 (567)
T 1qks_A          256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT  335 (567)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee
Confidence            99887765 58999999999888776542          222 577888888876554 455668999998654332222


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-----CccceEEEEEcCCCC-EEEEEc-CCCc
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-----HTGYLNTVTVSPDGS-LCASGG-KDMN  216 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~~~~i~~~~~~~~~~-~l~~~~-~d~~  216 (380)
                      ..........++.|+|+++. ++++...++.|.++|+.+.++.....-     |.+.-.. .++|++. .++++. .++.
T Consensus       336 ~~i~~~~~~~d~~~~pdgr~-~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~  413 (567)
T 1qks_A          336 TEISAERFLHDGGLDGSHRY-FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDS  413 (567)
T ss_dssp             EEEECCSSEEEEEECTTSCE-EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSE
T ss_pred             eeeeccccccCceECCCCCE-EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCe
Confidence            22223345778899998653 445555678999999999876554432     3221112 2588744 445553 4689


Q ss_pred             EEEEECCC-------CcEEEEEEecCc-eEEEEeecCcccceeeeeeeee-ccccceEEEEcCCc-----eee-eeee--
Q psy6984         217 AMLWDLND-------GKHLHTLVHNDI-ITALCFSPNRSFQKIKLDISRT-LQKSNLILYPINHG-----KME-TPFF--  279 (380)
Q Consensus       217 i~i~d~~~-------~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~-~~~~--  279 (380)
                      |.++|...       -+.+..+..... ...+..+|++++.-+....... .....+.++++.+.     ... ..+.  
T Consensus       414 Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~  493 (567)
T 1qks_A          414 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA  493 (567)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH
T ss_pred             EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccc
Confidence            99999987       456666654332 2345678887654332211100 01357888888755     111 1110  


Q ss_pred             ------ccccceeEEEEeecCCEEEEee-----CCCcEEEEeccc
Q psy6984         280 ------SLFRDVLSVAFSVDNRQIVSSS-----RDKTIKLWNTLA  313 (380)
Q Consensus       280 ------~~~~~v~~~~~s~~~~~l~s~~-----~dg~v~iw~~~~  313 (380)
                            .....+..+.|+|+|+++..+.     .++.|.++|..+
T Consensus       494 ~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t  538 (567)
T 1qks_A          494 EWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKT  538 (567)
T ss_dssp             HHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             cccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCC
Confidence                  1134678899999999876542     267787776543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=9.2e-13  Score=126.63  Aligned_cols=248  Identities=11%  Similarity=0.010  Sum_probs=158.9

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCC-----eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc-
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDN-----TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT-   87 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-   87 (380)
                      +|...+..+.|+|+ +++|+.++.++     +|++||+......    .....  ...+..++|+|||+.|+.++.++. 
T Consensus       122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~----~~~~~--~~~~~~~~wspDg~~l~~~~~~~~~  194 (710)
T 2xdw_A          122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKEL----PDVLE--RVKFSCMAWTHDGKGMFYNAYPQQD  194 (710)
T ss_dssp             TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEE----EEEEE--EECSCCEEECTTSSEEEEEECCCCS
T ss_pred             CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCC----ccccc--CcccceEEEEeCCCEEEEEEECCcc
Confidence            35557889999998 57777655433     8999998654211    11111  122567999999999999988766 


Q ss_pred             ---------------EEEEECCCCcee--eee--cccCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCCC------
Q psy6984          88 ---------------LRLWDLAAGKTT--RRF--EDHTKDVLSVAFSVDNRQIVSSSR-----DKTIKLWNTLA------  137 (380)
Q Consensus        88 ---------------i~vwd~~~~~~~--~~~--~~h~~~v~~~~~~~~~~~~~s~~~-----d~~v~iwd~~~------  137 (380)
                                     |++|++.+++..  ..+  ..|...+..+.|+|||++++.++.     +..+.+||+.+      
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                           999999887632  222  234555789999999999887764     56899999764      


Q ss_pred             cc-eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC---CCeEEEEeCCCcee--eEeeeCCcc--ceEEEEEcCCCCEEE
Q psy6984         138 HC-KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW---DRMVKVWNLTNCKL--KINHSGHTG--YLNTVTVSPDGSLCA  209 (380)
Q Consensus       138 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~--~~~~~~~~~--~i~~~~~~~~~~~l~  209 (380)
                      +. ....+. .+...+.. .++|+++. +++.+..   +..|.+||+.+...  ...+..|..  .+..+.+++++.+++
T Consensus       275 ~~~~~~~l~-~~~~~~~~-~~s~dg~~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          275 GILKWVKLI-DNFEGEYD-YVTNEGTV-FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             SSCCCEEEE-CSSSSCEE-EEEEETTE-EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             CccceEEee-CCCCcEEE-EEeccCCE-EEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence            31 222332 23333433 46776653 3333332   34799999987531  122333333  678889988888888


Q ss_pred             EEcCCCc--EEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984         210 SGGKDMN--AMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK  273 (380)
Q Consensus       210 ~~~~d~~--i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (380)
                      +...|+.  |++||+.+++.+..+. +...+..+.++|++....+.  .........++.|++.+++
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~--~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ--FTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE--EECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE--EeCCCCCCEEEEEECCCCc
Confidence            8888874  5667876777666654 34567778888876433222  2222334567788877665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=1e-12  Score=126.01  Aligned_cols=247  Identities=11%  Similarity=-0.010  Sum_probs=157.6

Q ss_pred             CcccceEEEEeCCCCCCeEE-----EeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc-
Q psy6984          14 GHNGWVTQIATNPKFPDTIL-----SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT-   87 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~-----t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~-   87 (380)
                      +|...+..+.|+|+ +++||     +|+.+.+|++||+......   ....+...  ....++|+|||+.|+.++.|.. 
T Consensus       118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~---~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~  191 (695)
T 2bkl_A          118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWS---KVDVIEGG--KYATPKWTPDSKGFYYEWLPTDP  191 (695)
T ss_dssp             SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBC---SSCCBSCC--TTCCCEECTTSSEEEEEECCCCT
T ss_pred             CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCc---CCcccCcc--cccceEEecCCCEEEEEEecCCC
Confidence            56667999999998 67777     4555678999998764321   01111111  1257899999999999998776 


Q ss_pred             ------------EEEEECCCCce----eeeecccCCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCcceEEEeeCC
Q psy6984          88 ------------LRLWDLAAGKT----TRRFEDHTKDVLSVAFSVDNRQIVSSSRDK----TIKLWNTLAHCKFTIVEDG  147 (380)
Q Consensus        88 ------------i~vwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~----~v~iwd~~~~~~~~~~~~~  147 (380)
                                  |++|++.+++.    +.....|...+..+.|+|||++++.++.++    .+.+|+........+..  
T Consensus       192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--  269 (695)
T 2bkl_A          192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK--  269 (695)
T ss_dssp             TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--
T ss_pred             CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec--
Confidence                        99999988763    222234556788999999999988877665    66667654333222222  


Q ss_pred             CcCcEEEEEEccCCCCCEEEEEe---CCCeEEEEeCCCcee---eEeeeCC-ccceEEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         148 HSDWVSCVRFSPNHQNPIIVSAG---WDRMVKVWNLTNCKL---KINHSGH-TGYLNTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       148 ~~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~---~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                      +...+....+ +++.  +++...   .++.|.+||+.+...   ......+ ...+..++++ ++.++++...|+..++|
T Consensus       270 ~~~~~~~~~~-~~g~--l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~  345 (695)
T 2bkl_A          270 GVGAKYEVHA-WKDR--FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR  345 (695)
T ss_dssp             CSSCCEEEEE-ETTE--EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             CCCceEEEEe-cCCc--EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence            2333444555 4444  455444   358899999977542   2223333 4467788888 67788889999988887


Q ss_pred             ECC-CCcEEEEEEe--cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee
Q psy6984         221 DLN-DGKHLHTLVH--NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM  274 (380)
Q Consensus       221 d~~-~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (380)
                      .+. .++....+..  ...+..+.++|++....+..  ........+++|++.+++.
T Consensus       346 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~--ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          346 VATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF--TSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE--EETTEEEEEEEEETTTCCE
T ss_pred             EEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE--cCCCCCCEEEEEECCCCcE
Confidence            654 3555555543  34566777777764433222  2222335677888776653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=5.9e-11  Score=104.51  Aligned_cols=273  Identities=8%  Similarity=-0.035  Sum_probs=161.4

Q ss_pred             CCeEEEeeC--CC---eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCcEEEEEC
Q psy6984          29 PDTILSCSR--DN---TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKTLRLWDL   93 (380)
Q Consensus        29 ~~~l~t~~~--dg---~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~   93 (380)
                      +.+++.+..  ..   +|.++|.......     ..+..-...  .+.++|||++|+.+.          .++.|.+||.
T Consensus        32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           32 GRRSYINLPAHHSAIIQQWVLDAGSGSIL-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             CCEEEEeCCcccCCccEEEEEECCCCeEE-----EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            556665542  33   7899987643321     122211122  799999999999886          3678999999


Q ss_pred             CCCceeeeeccc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEE-eeCCCcCcEEEEEEccCCCC
Q psy6984          94 AAGKTTRRFEDH-------TKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTI-VEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        94 ~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .+.+.+..+..-       ......++|+|||++++.+..  ++.|.++| .+...... +..+     .|+.+.|.+..
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-----~~~~~~~~~~~  178 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-----TCYHIHPGAPS  178 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-----ceEEEEeCCCc
Confidence            988777665321       123457899999999998874  57899999 76655433 3211     23555666554


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeee-----CCccc-eEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE--EEEEec-
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHS-----GHTGY-LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL--HTLVHN-  234 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~-  234 (380)
                       .+++.+.|+.+.++|. +.+......     ....+ .....+.+++..++..+..+.+.+.|+......  ..+... 
T Consensus       179 -~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~  256 (373)
T 2mad_H          179 -TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             -eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence             4566778999999999 665442211     11111 122445666555444447788999988654311  111000 


Q ss_pred             CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC----------CC
Q psy6984         235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR----------DK  304 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------dg  304 (380)
                      .......|.|                                      .....++++|+++.++.+..          ++
T Consensus       257 ~~~~~~~~~p--------------------------------------~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          257 GGRKADTWRP--------------------------------------GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             Ccccccceec--------------------------------------CceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            0000011111                                      11234677888887766543          23


Q ss_pred             cEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCC-EEEEEe-eCCeEEEEEeee
Q psy6984         305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ-TLFAGY-SDNTIRVWQVSV  375 (380)
Q Consensus       305 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~g~-~dg~v~iw~~~~  375 (380)
                      .|.+.|           .++.+.+..+...          .....++|+|||+ .++++. .++.|.++|+..
T Consensus       299 ~V~VID-----------~~t~~vv~~i~~g----------~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          299 EVTSVT-----------GLVGQTSSQISLG----------HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             eEEEEE-----------CCCCEEEEEEECC----------CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            455554           4444444433211          1235789999999 777776 589999999753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=5.8e-12  Score=106.23  Aligned_cols=191  Identities=10%  Similarity=0.039  Sum_probs=141.8

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC-cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccC-
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT-  106 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-  106 (380)
                      +++|++++.|+.|.+||.......     ..+..+. ..+.++.++|+|++++  +.++.|..||. +++.+.++..+. 
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~-----w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~   76 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIV-----WEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAG   76 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEE-----EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTT
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEE-----EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCC
Confidence            468999999999999997544322     2233333 3578899999999888  45778999999 788888887643 


Q ss_pred             CCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCcceEEEee-C----CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984         107 KDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVE-D----GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~~~~~~~~~-~----~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~  180 (380)
                      ..+.++.+.++|+.+++.+. ++.+..+|... ....... .    .+......+++.+++  .++++...++.|..||.
T Consensus        77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~~~~~~~~~~~~~v~~~~~G--~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           77 CEMQTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFETGIERPHAQFRQINKNKKG--NYLVPLFATSEVREIAP  153 (276)
T ss_dssp             CEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEECCSCSSGGGSCSCCEECTTS--CEEEEETTTTEEEEECT
T ss_pred             ccccccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEeccCCCCcccccccCceECCCC--CEEEEecCCCEEEEECC
Confidence            46888999999999999887 77787777533 3222221 1    111223445566654  47888888999999999


Q ss_pred             CCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      . ++....+... ..+.++...++|++++++..+++|..+|..+++.+..+.
T Consensus       154 ~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          154 N-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             T-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             C-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            8 7777666543 345677889999999999999999999999999888875

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=6.6e-12  Score=105.63  Aligned_cols=220  Identities=7%  Similarity=-0.051  Sum_probs=147.8

Q ss_pred             ceEEEEeCCCCCCeEE-EeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984          18 WVTQIATNPKFPDTIL-SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~-t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      ....+++.++ +++++ +.+.++.|.+|+.......     .....+...+.+++++++|+++++.. ++.|.+||....
T Consensus        25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~   97 (270)
T 1rwi_B           25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTT-----VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN   97 (270)
T ss_dssp             CEEEEEECTT-CCEEEEECSSSCEEEEECC-----E-----ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS
T ss_pred             CccceEECCC-CCEEEEccCCCCcEEEecCCCcccc-----eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc
Confidence            6778999887 56666 5467889999986432111     00122334577899999999666655 889999998765


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK  176 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~  176 (380)
                      ............+.+++++++|..+++...++.|.+|+..+..... ........+.++++.+++.  ++++...++.|.
T Consensus        98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~  174 (270)
T 1rwi_B           98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVV  174 (270)
T ss_dssp             CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-CCCCSCCSCCCEEECTTCC--EEEEEGGGTEEE
T ss_pred             eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-eccccCCCceeEEEeCCCC--EEEEECCCCEEE
Confidence            4432222233568899999999988887788899999754432221 1122233567889988653  666666678999


Q ss_pred             EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcc
Q psy6984         177 VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRS  247 (380)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~  247 (380)
                      +||............+...+..++++++|.++++...++.|.+||........... ....+..+++++++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC
T ss_pred             EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC
Confidence            99988765443333334668899999999888888888999999986654332211 124577888887764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=3.6e-12  Score=110.57  Aligned_cols=231  Identities=12%  Similarity=0.093  Sum_probs=149.3

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      ++++.++..++.. ......++++++ +..+++...++.|.+||.........++.....++......+++  ++..|+.
T Consensus        70 D~~t~~~~~~i~~-~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv  145 (328)
T 3dsm_A           70 DINTFKEVGRITG-FTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYV  145 (328)
T ss_dssp             ETTTCCEEEEEEC-CSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEE
T ss_pred             ECcccEEEEEcCC-CCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEE
Confidence            4455666666643 456788888776 44444444789999999764322111111110111123455666  3455555


Q ss_pred             Ee--CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC----------CcEEEEeCCCcceEEEeeCCCc
Q psy6984          82 GS--WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD----------KTIKLWNTLAHCKFTIVEDGHS  149 (380)
Q Consensus        82 ~~--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----------~~v~iwd~~~~~~~~~~~~~~~  149 (380)
                      +.  .++.|.++|+.+++....+... .....++++|+|++++++..+          +.|.++|..+......+.....
T Consensus       146 ~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g  224 (328)
T 3dsm_A          146 NCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG  224 (328)
T ss_dssp             EECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred             EcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence            54  4889999999999887776542 345678999999877776654          7899999876554433332222


Q ss_pred             CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe--eeCCccceEEEEEcC-CCCEEEEE----cCCCcEEEEEC
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSP-DGSLCASG----GKDMNAMLWDL  222 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~----~~d~~i~i~d~  222 (380)
                      .....++++|+++  .|+.+..  .|.+||..+.+....  .......+..++++| +++++++.    ..++.|.+||.
T Consensus       225 ~~p~~la~~~d~~--~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          225 DWPSEVQLNGTRD--TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             CCCEEEEECTTSC--EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             CCceeEEEecCCC--EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            3578999999765  4544433  899999987665321  111235688999999 56666666    67899999999


Q ss_pred             CCCcEEEEEEecCceEEEEe
Q psy6984         223 NDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       223 ~~~~~~~~~~~~~~i~~~~~  242 (380)
                      . ++.+..+........++|
T Consensus       301 ~-g~~~~~i~~G~~P~~~~~  319 (328)
T 3dsm_A          301 Q-GKLIDEFYVGIIPGAFCW  319 (328)
T ss_dssp             T-CCEEEEEEEEESEEEEEE
T ss_pred             C-CCEEEEEEeccCcceEEE
Confidence            8 888877765554444443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=4.7e-12  Score=122.23  Aligned_cols=275  Identities=12%  Similarity=0.031  Sum_probs=158.0

Q ss_pred             ccCCCEEEEEeCCC-----cEEEEECC---CCceeeee------cccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEE
Q psy6984          73 SSDGNYALSGSWDK-----TLRLWDLA---AGKTTRRF------EDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLW  133 (380)
Q Consensus        73 ~~~~~~l~s~~~d~-----~i~vwd~~---~~~~~~~~------~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iw  133 (380)
                      +|+|++++....++     .|.+.+..   .++....+      .+|...+..++|||||+++|.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48999888665443     34444544   33332221      2233367889999999999876654     369999


Q ss_pred             eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--------------eEEEEeCCCce----eeEeeeCCccc
Q psy6984         134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--------------MVKVWNLTNCK----LKINHSGHTGY  195 (380)
Q Consensus       134 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--------------~v~iwd~~~~~----~~~~~~~~~~~  195 (380)
                      |+.++.......  +...+..++|+|+ +  .|+.+..++              .|++|++.+..    +......+...
T Consensus       195 dl~tg~~~~~~~--~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          195 GVADGKPLADEL--KWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             ETTTCCEEEEEE--EEEESCCCEESTT-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             ECCCCCCCCccC--CCceeccEEEECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            987765543211  1111246889998 5  344444443              38999987654    22222333345


Q ss_pred             eEEEEEcCCCCEEEEEcCC-----CcEEEEECCCC--cEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         196 LNTVTVSPDGSLCASGGKD-----MNAMLWDLNDG--KHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       196 i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      +..+.++|||++|+..+.+     ..|++||+.++  +....+ ......... ++|++....+...  .......++++
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~--~~~~~~~l~~~  346 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSG--DGAPLKKIVRV  346 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEEC--TTCTTCEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEEC--CCCCCCEEEEE
Confidence            7889999999998877654     38999999876  302333 233333333 3465543222211  11224557788


Q ss_pred             EcCCc--eeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCC
Q psy6984         268 PINHG--KMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPP  345 (380)
Q Consensus       268 ~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (380)
                      +...+  .....+..+...+..++++ ++..+++...|+..++|...         ..+. ....+.        .....
T Consensus       347 d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~---------~~g~-~~~~l~--------~~~~~  407 (741)
T 1yr2_A          347 DLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD---------LDGK-PAGAVS--------LPGIG  407 (741)
T ss_dssp             ECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE---------TTSC-EEEECB--------CSSSC
T ss_pred             eCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe---------CCCC-ceeecc--------CCCCe
Confidence            87763  3332222223345567776 66778888889998888532         1111 111111        11233


Q ss_pred             ceEEEEEecCCCEEEE-Ee---eCCeEEEEEee
Q psy6984         346 MCLSLAWSTDGQTLFA-GY---SDNTIRVWQVS  374 (380)
Q Consensus       346 ~~~~~~~s~dg~~l~~-g~---~dg~v~iw~~~  374 (380)
                      .+..++++||++.|+. .+   ..+.|..||+.
T Consensus       408 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          408 SASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             EEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            4667889999886663 22   35678888864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.49  E-value=5.7e-11  Score=102.20  Aligned_cols=206  Identities=9%  Similarity=0.077  Sum_probs=131.8

Q ss_pred             cCcccceEEEEeCCCCCCeEEE-------eeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeC
Q psy6984          13 NGHNGWVTQIATNPKFPDTILS-------CSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSW   84 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t-------~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~   84 (380)
                      .+.-.....++|.++ +.++++       ...++.|.+|+....... ........++...+..++++++ ++++++. .
T Consensus        14 ~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVAD-M   90 (314)
T ss_dssp             ECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEE-T
T ss_pred             hccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEE-C
Confidence            444556788999876 567777       577899999986543211 0100001224456889999999 6544444 4


Q ss_pred             CCcEEEEECCCCceeee-ecc----cCCCeEEEEEeCCCCEEEEEeCC---------------CcEEEEeCCCcceEEEe
Q psy6984          85 DKTLRLWDLAAGKTTRR-FED----HTKDVLSVAFSVDNRQIVSSSRD---------------KTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~~s~~~d---------------~~v~iwd~~~~~~~~~~  144 (380)
                      +..|.+||.. ++.... ...    ....+.+++++++|+..++...+               +.|..|+.. +......
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            4579999988 665433 221    12347899999999888777655               567777654 2222221


Q ss_pred             eCCCcCcEEEEEEc----cCCCCCEEEEEeCCCeEEEEeCC-Ccee-----eEeeeCCc-cceEEEEEcCCCCEEEEEcC
Q psy6984         145 EDGHSDWVSCVRFS----PNHQNPIIVSAGWDRMVKVWNLT-NCKL-----KINHSGHT-GYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       145 ~~~~~~~v~~~~~~----~~~~~~~l~s~~~d~~v~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~~~~~~~l~~~~~  213 (380)
                        .+......++++    |+++ .++++...++.|.+||+. +++.     .....++. ..+..++++++|+++++...
T Consensus       169 --~~~~~~~~i~~~~~~d~dg~-~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          169 --TAFQFPNGIAVRHMNDGRPY-QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             --EEESSEEEEEEEECTTSCEE-EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             --cCCCCcceEEEecccCCCCC-EEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence              122345788888    7653 244555667899999976 3331     12223333 56788999999998888878


Q ss_pred             CCcEEEEECCCCc
Q psy6984         214 DMNAMLWDLNDGK  226 (380)
Q Consensus       214 d~~i~i~d~~~~~  226 (380)
                      ++.|.+||..+++
T Consensus       246 ~~~i~~~d~~~g~  258 (314)
T 1pjx_A          246 SSHIEVFGPDGGQ  258 (314)
T ss_dssp             TTEEEEECTTCBS
T ss_pred             CCEEEEEcCCCCc
Confidence            8899999876554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.49  E-value=1.2e-10  Score=100.13  Aligned_cols=240  Identities=10%  Similarity=0.066  Sum_probs=150.6

Q ss_pred             CCeEEEEEeCCCCEEEE-------EeCCCcEEEEeCCCcceEEEee---CCCcCcEEEEEEccCCCCCEEEEEeCCCeEE
Q psy6984         107 KDVLSVAFSVDNRQIVS-------SSRDKTIKLWNTLAHCKFTIVE---DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK  176 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s-------~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~  176 (380)
                      ....+++|++++..+++       +..++.|..||..++.......   .++...+.++++.+++.  .++.++....|.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~~~~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEEECCCCEE
Confidence            45678999999988877       5778899999965544332221   12445688899988621  244444455899


Q ss_pred             EEeCCCceeeEe-eeC----CccceEEEEEcCCCCEEEEEcCC---------------CcEEEEECCCCcEEEEEEecCc
Q psy6984         177 VWNLTNCKLKIN-HSG----HTGYLNTVTVSPDGSLCASGGKD---------------MNAMLWDLNDGKHLHTLVHNDI  236 (380)
Q Consensus       177 iwd~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~~~~~~~~  236 (380)
                      +||.. ++.... ...    ....+..++++|+|+++++...+               +.|..+|.. ++..........
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF  173 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC
Confidence            99988 554322 211    12357899999999988877655               578888776 554443344445


Q ss_pred             eEEEEee----cCcccceeeeeeeeeccccceEEEEcC-Cceee-----eeeeccc-cceeEEEEeecCCEEEEeeCCCc
Q psy6984         237 ITALCFS----PNRSFQKIKLDISRTLQKSNLILYPIN-HGKME-----TPFFSLF-RDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       237 i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      ...++++    |++....+.     ......+.+|+.. .++..     ..+..+. .....++++++|+++++...++.
T Consensus       174 ~~~i~~~~~~d~dg~~l~v~-----~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          174 PNGIAVRHMNDGRPYQLIVA-----ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEE-----ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cceEEEecccCCCCCEEEEE-----ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            6788888    876432111     1224556677654 33321     1111111 44678999999998888778889


Q ss_pred             EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE-EeeCCeEEEEEeee
Q psy6984         306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA-GYSDNTIRVWQVSV  375 (380)
Q Consensus       306 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-g~~dg~v~iw~~~~  375 (380)
                      |..|+..++.....+.                    .....+.+++++|+|+.|++ ...++.|..|++..
T Consensus       249 i~~~d~~~g~~~~~~~--------------------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIR--------------------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCBSCSEEEE--------------------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCCcEeEEEe--------------------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9999764222111110                    01134678899999995554 44567899998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.48  E-value=1.4e-10  Score=99.04  Aligned_cols=228  Identities=11%  Similarity=0.095  Sum_probs=151.4

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      ...+..+...--...|+|....++++...++.|..|+......      . .......+.+++++++|+++++ . +..|
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~------~-~~~~~~~~~~i~~~~dG~l~v~-~-~~~l   75 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV------Q-RVTMDAPVSSVALRQSGGYVAT-I-GTKF   75 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE------E-EEECSSCEEEEEEBTTSSEEEE-E-TTEE
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE------E-EEeCCCceEEEEECCCCCEEEE-E-CCeE
Confidence            3445555666778889986556677777789999998764321      1 1123356889999999995554 4 5689


Q ss_pred             EEEECCCCceeeeecc----cCCCeEEEEEeCCCCEEEEEeCC---------CcEEEEeCCCcceEEEeeCCCcCcEEEE
Q psy6984          89 RLWDLAAGKTTRRFED----HTKDVLSVAFSVDNRQIVSSSRD---------KTIKLWNTLAHCKFTIVEDGHSDWVSCV  155 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~s~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~v~~~  155 (380)
                      .+||..+++.......    ....+.+++++|+|++.++...+         ..-.+|............ ......+.+
T Consensus        76 ~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-~~~~~pngi  154 (297)
T 3g4e_A           76 CALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-DQVDISNGL  154 (297)
T ss_dssp             EEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-EEESBEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-eccccccce
Confidence            9999988765433221    12347889999999977655322         223455433222222111 123346789


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCC--Ccee-----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLT--NCKL-----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      +|+|+++. ++++.+.++.|..|++.  ++.+     ......+...+..++++++|++.++....+.|..||..+++.+
T Consensus       155 ~~spdg~~-lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          155 DWSLDHKI-FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL  233 (297)
T ss_dssp             EECTTSCE-EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred             EEcCCCCE-EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence            99998653 45566678899999873  4332     1122233456889999999998888878889999999989988


Q ss_pred             EEEEec-CceEEEEee-cCcc
Q psy6984         229 HTLVHN-DIITALCFS-PNRS  247 (380)
Q Consensus       229 ~~~~~~-~~i~~~~~~-~~~~  247 (380)
                      ..+..+ ..+++++|. |+..
T Consensus       234 ~~i~~p~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          234 QTVKLPVDKTTSCCFGGKNYS  254 (297)
T ss_dssp             EEEECSSSBEEEEEEESGGGC
T ss_pred             EEEECCCCCceEEEEeCCCCC
Confidence            877655 578899998 6643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=1.2e-12  Score=114.57  Aligned_cols=176  Identities=11%  Similarity=0.070  Sum_probs=130.8

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCC-----CcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEE
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDT-----NYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWD   92 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   92 (380)
                      .++.+++++. ..++++|+.+ .+++|++.....     ...........+.. |+.++|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            5888999988 4688888887 666798653210     00011112234555 999999  89999999 889999999


Q ss_pred             CCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984          93 LAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus        93 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      +.+.........|..++.++.+.+.  .+++++.||.+.+||+.......     +...|.|++|+|++    ++.|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG----~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ----LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE----EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc----eEEEEcC
Confidence            9876665566677788888887654  38899999999999987654432     33469999999976    5678899


Q ss_pred             CeEEEEeCCCcee--eEee------e---CCccceEEEEEcCCCCEEEE
Q psy6984         173 RMVKVWNLTNCKL--KINH------S---GHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       173 ~~v~iwd~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~  210 (380)
                      |.+++|+....+.  ...+      .   +|...|.++.|.+++.++++
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999998877664  3333      2   36788999999999988875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.47  E-value=4.2e-11  Score=115.61  Aligned_cols=243  Identities=12%  Similarity=0.019  Sum_probs=144.4

Q ss_pred             CCCcceEEEEEccCCCEEEEEeCC-----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCc-------
Q psy6984          62 GHSHFISDIVLSSDGNYALSGSWD-----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT-------  129 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~-------  129 (380)
                      +|...+..+.|||||++|+.++.+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            444568889999999999877654     35999999998876531 12222357899999 99988877654       


Q ss_pred             -------EEEEeCCCcc---eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC-----CCeEEEEeCCCc--eeeEeeeCC
Q psy6984         130 -------IKLWNTLAHC---KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW-----DRMVKVWNLTNC--KLKINHSGH  192 (380)
Q Consensus       130 -------v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~--~~~~~~~~~  192 (380)
                             |.+|++.+..   ........+...+..+.++|+++.  |+..+.     ...|.+||+.+.  +....+..+
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~  315 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD  315 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence                   8888875543   222222233346889999998763  444333     348999999765  302333334


Q ss_pred             ccceEEEEEcCCCCEEEEEcC----CCcEEEEECCCCc-EEEEE-E-ecCceEEEEeecCcccceeeeeeeeeccccceE
Q psy6984         193 TGYLNTVTVSPDGSLCASGGK----DMNAMLWDLNDGK-HLHTL-V-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLI  265 (380)
Q Consensus       193 ~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (380)
                      ....... ++|+|+.|+..+.    ++.|.+||+.++. ....+ . +...+..+.++.+ .. ...   ........++
T Consensus       316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~-~l-v~~---~~~dg~~~l~  389 (741)
T 1yr2_A          316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGN-RL-FAS---YIHDAKSQVL  389 (741)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBT-EE-EEE---EEETTEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECC-EE-EEE---EEECCEEEEE
Confidence            4334444 3488888777665    3569999998752 33333 2 2334555666522 11 111   1111122344


Q ss_pred             EEEcCCceeeeeee-ccccceeEEEEeecCCEEEE----eeCCCcEEEEecccce
Q psy6984         266 LYPINHGKMETPFF-SLFRDVLSVAFSVDNRQIVS----SSRDKTIKLWNTLAHC  315 (380)
Q Consensus       266 ~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s----~~~dg~v~iw~~~~~~  315 (380)
                      +++.. ++....+. .....+..+.++|+++.|+.    ....++|+.||+.++.
T Consensus       390 ~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          390 AFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            55543 33322232 23456778899999886662    2335789999876543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.45  E-value=5.4e-10  Score=98.34  Aligned_cols=255  Identities=7%  Similarity=-0.013  Sum_probs=149.4

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEee----------CCCeEEEeecCCCCCCccccc---ccccCCCcceE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCS----------RDNTLIIWKLTRDDTNYGVPQ---KRLKGHSHFIS   68 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~----------~dg~v~vw~~~~~~~~~~~~~---~~~~~h~~~v~   68 (380)
                      +..+.++..++..-..+  .+.++|+ +++++.+.          .++.|.+||.........++.   .+.. +.....
T Consensus        53 D~~t~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~-~g~~p~  128 (373)
T 2mad_H           53 DAGSGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-VGPYSW  128 (373)
T ss_pred             ECCCCeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-cCCCcc
Confidence            34556667777643444  8999998 56666664          367899999764322211111   0010 112345


Q ss_pred             EEEEccCCCEEEEEeC--CCcEEEEECCCCceeee-ecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          69 DIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRR-FEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      .+.++|||++|+++..  ++.|.++| .+++.+.. +.. ..   ++.+.|++ ..+++.+.|+.+.++|. ........
T Consensus       129 ~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          129 MNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             ceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence            7899999999998874  47899999 99988776 532 12   24555665 45667778999999998 54433221


Q ss_pred             e-----CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee--EeeeC----------CccceEEEEEcCCCCE
Q psy6984         145 E-----DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK--INHSG----------HTGYLNTVTVSPDGSL  207 (380)
Q Consensus       145 ~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~  207 (380)
                      .     .+.........+.+++.. +++.. .++.+.+.|+......  ..+.-          .......+.++|+++.
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~  280 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGR-IVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             eccccccCCcceeecceeEecCCE-EEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence            1     111111122344554432 33333 5778999998654321  11110          0112333667777776


Q ss_pred             EEEEcC----------CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeee
Q psy6984         208 CASGGK----------DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP  277 (380)
Q Consensus       208 l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (380)
                      +.++..          ++.|.++|..+.+.+..+...                                           
T Consensus       281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-------------------------------------------  317 (373)
T 2mad_H          281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-------------------------------------------  317 (373)
T ss_pred             EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-------------------------------------------
Confidence            655432          245777776666554433211                                           


Q ss_pred             eeccccceeEEEEeecCC-EEEEee-CCCcEEEEeccccee
Q psy6984         278 FFSLFRDVLSVAFSVDNR-QIVSSS-RDKTIKLWNTLAHCK  316 (380)
Q Consensus       278 ~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~v~iw~~~~~~~  316 (380)
                           .....++|+|||+ .++++. .++.|.++|..+.+.
T Consensus       318 -----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v  353 (373)
T 2mad_H          318 -----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             -----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence                 1245788999999 677776 489999998755443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.44  E-value=2e-10  Score=100.07  Aligned_cols=278  Identities=12%  Similarity=0.094  Sum_probs=169.0

Q ss_pred             EeCCCCCCeEEEeeC-----CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCc
Q psy6984          23 ATNPKFPDTILSCSR-----DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKT   87 (380)
Q Consensus        23 ~~~~~~~~~l~t~~~-----dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~   87 (380)
                      ...|+ +..++....     ++.|.+.|.........++    .+.. + . +.++|||++++++.          .++.
T Consensus        39 ~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~----vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~  110 (386)
T 3sjl_D           39 APAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID----GGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDY  110 (386)
T ss_dssp             CCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE----ECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             ccCCC-CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE----CCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCE
Confidence            34455 555555543     6789998875433221111    1222 2 3 99999999888775          3578


Q ss_pred             EEEEECCCCceeeeecccC-------CCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          88 LRLWDLAAGKTTRRFEDHT-------KDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                      |.+||..+.+.+..+..-.       .....++|+|||++++.+..  ++.|.++|+.+......+....     |....
T Consensus       111 VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----~~~~~  185 (386)
T 3sjl_D          111 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIF  185 (386)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEE
T ss_pred             EEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----cceee
Confidence            9999999998888764211       23556899999999988764  6899999988876655553221     22233


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCC-ceeeEeeeCC----ccceE-EEEEc-CCCCEEEEEcCCCcEEEEECCCCc--EEE
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTN-CKLKINHSGH----TGYLN-TVTVS-PDGSLCASGGKDMNAMLWDLNDGK--HLH  229 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~--~~~  229 (380)
                      |.+.. .+++.+.||.+.+.++.. ++.......+    ...+. ...|. ++|++++ .+.++.+++.|...+.  .+.
T Consensus       186 P~g~~-~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~  263 (386)
T 3sjl_D          186 PTAPD-TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLP  263 (386)
T ss_dssp             EEETT-EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECC
T ss_pred             cCCCc-eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeec
Confidence            44332 466777899999999876 4442211111    11221 23453 6776555 5558999999997654  222


Q ss_pred             EEE-----------ecCceEEEEeecCcccceeeeeee-ee---ccccceEEEEcCCceeeeeeeccccceeEEEEeecC
Q psy6984         230 TLV-----------HNDIITALCFSPNRSFQKIKLDIS-RT---LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN  294 (380)
Q Consensus       230 ~~~-----------~~~~i~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  294 (380)
                      .+.           .......+++++++....+..... ..   .....+.+++..+.+....+.- ...+++++++||+
T Consensus       264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~  342 (386)
T 3sjl_D          264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDE  342 (386)
T ss_dssp             CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSS
T ss_pred             ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCC
Confidence            221           122233455566554332221100 00   1124678889888887654432 2467899999999


Q ss_pred             C-EEEEe-eCCCcEEEEeccccee
Q psy6984         295 R-QIVSS-SRDKTIKLWNTLAHCK  316 (380)
Q Consensus       295 ~-~l~s~-~~dg~v~iw~~~~~~~  316 (380)
                      + +|+++ ..++.|.++|..+++.
T Consensus       343 ~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          343 KPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             SCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CeEEEEEcCCCCeEEEEECCCCcE
Confidence            7 66664 4589999998755443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=3.9e-10  Score=100.63  Aligned_cols=266  Identities=12%  Similarity=0.081  Sum_probs=163.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFT  142 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~  142 (380)
                      .....++++++++++++...++.|++||..+++........ .... ++|+|+++.++++..++  .|.+++........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            35778999999997777777899999999887766554432 2233 89999999998888766  78888865443322


Q ss_pred             Ee---eCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe----eeCCccce-E-EEEEcCC-CCEEEEEc
Q psy6984         143 IV---EDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN----HSGHTGYL-N-TVTVSPD-GSLCASGG  212 (380)
Q Consensus       143 ~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~~~i-~-~~~~~~~-~~~l~~~~  212 (380)
                      ..   .......+.+++++|...  .|+.+..++.|+.||..+......    ..++...- . .++++|+ +.++++-.
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            22   111345567899998433  355566788999999987654332    22222222 3 8999994 66777777


Q ss_pred             CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         213 KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       213 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      .++.|+.|+....  +..+.....       ..+ +                     ..+.   ...........++++|
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~-------~~g-~---------------------~dg~---~~~~~~~~P~gia~d~  332 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSAT-------QKT-V---------------------QDGL---REEALFAQPNGMTVDE  332 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTT-------CCS-C---------------------BCEE---GGGCBCSSEEEEEECT
T ss_pred             CCCEEEEEecCCC--EEEEEeCCC-------CCC-c---------------------CCCc---ccccEeCCCeEEEEeC
Confidence            7889999987533  111111000       000 0                     0000   0000112356899999


Q ss_pred             cCCEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEE
Q psy6984         293 DNRQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW  371 (380)
Q Consensus       293 ~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw  371 (380)
                      +|+++++-. .++.|+.|+...+....+.......   ... +-  ......-.....++++++|.++++-..++.|+.+
T Consensus       333 dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~---g~~-~g--~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          333 DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVA---SQI-DG--TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCB---SCC-CB--STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCC---CcC-CC--ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            999888777 7899999986555433332211100   000 00  0001111235689999999888888888889887


Q ss_pred             Eee
Q psy6984         372 QVS  374 (380)
Q Consensus       372 ~~~  374 (380)
                      .++
T Consensus       407 ~~e  409 (409)
T 3hrp_A          407 AVE  409 (409)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            763

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.43  E-value=8.9e-11  Score=102.28  Aligned_cols=279  Identities=12%  Similarity=0.041  Sum_probs=166.5

Q ss_pred             EEEccCCCEEEEEeC-----CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEe
Q psy6984          70 IVLSSDGNYALSGSW-----DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------RDKTIKLWN  134 (380)
Q Consensus        70 ~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------~d~~v~iwd  134 (380)
                      ....|+++.+++...     ++.|.++|..+++.+..+..-..+ . ++++|||++++.+.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445789999888876     679999999999999888654444 4 99999999887765          367899999


Q ss_pred             CCCcceEEEeeCCC------cCcEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC
Q psy6984         135 TLAHCKFTIVEDGH------SDWVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS  206 (380)
Q Consensus       135 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  206 (380)
                      ..+......+.-+.      ......++++|+++.  ++.+.  .++.|.++|+.+.+......-..  . ...+....+
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~  190 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPD  190 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETT
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCc
Confidence            87765544433211      112346899998763  44443  36899999999988776654211  1 222333456


Q ss_pred             EEEEEcCCCcEEEEECCC-CcEEEEEE-ec----CceE-EEEee-cCcccceeeeeeeeeccccceEEEEcCCcee--ee
Q psy6984         207 LCASGGKDMNAMLWDLND-GKHLHTLV-HN----DIIT-ALCFS-PNRSFQKIKLDISRTLQKSNLILYPINHGKM--ET  276 (380)
Q Consensus       207 ~l~~~~~d~~i~i~d~~~-~~~~~~~~-~~----~~i~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  276 (380)
                      .+++.+.||.+.+.++.+ ++...... .-    .++. ...|. +++.+..       ....+.+++++...+..  ..
T Consensus       191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-------vs~~g~V~v~d~~~~~~~v~~  263 (386)
T 3sjl_D          191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-------PTYTGKIHQIDLSSGDAKFLP  263 (386)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-------EBTTSEEEEEECTTSSCEECC
T ss_pred             eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-------EeCCCEEEEEECCCCcceeec
Confidence            777888899999999876 55422110 00    0000 01221 2221111       11235566777654432  11


Q ss_pred             eee--c--------cccceeEEEEeecCCEEEEeeCCCcEEEEecc-cceeeeEeecccceEEEeeCcccccccCCCCCC
Q psy6984         277 PFF--S--------LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL-AHCKFTIVDLETKKMVEELRPDVVSQSTKADPP  345 (380)
Q Consensus       277 ~~~--~--------~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (380)
                      +..  .        .......++++|+++.++....++.  -|... ....+.++|..+.+.+..+....          
T Consensus       264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~--~~~hk~~~~~V~viD~~t~kv~~~i~vg~----------  331 (386)
T 3sjl_D          264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD--EWRHKTASRFVVVLDAKTGERLAKFEMGH----------  331 (386)
T ss_dssp             CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC--TTCTTSCEEEEEEEETTTCCEEEEEEEEE----------
T ss_pred             ceeccccccccccccCCCcceeeECCCCCeEEEEecccc--ccccCCCCCEEEEEECCCCeEEEEEECCC----------
Confidence            111  0        0122334677888877766543110  01111 12334455667776666553321          


Q ss_pred             ceEEEEEecCCC-EEEEEe-eCCeEEEEEee
Q psy6984         346 MCLSLAWSTDGQ-TLFAGY-SDNTIRVWQVS  374 (380)
Q Consensus       346 ~~~~~~~s~dg~-~l~~g~-~dg~v~iw~~~  374 (380)
                      ....+++++|++ .|++.. .++.|.++|..
T Consensus       332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            345799999997 677654 58999999975

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=1.3e-09  Score=92.93  Aligned_cols=231  Identities=10%  Similarity=0.070  Sum_probs=139.0

Q ss_pred             cceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          65 HFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        65 ~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      ..-.+..|+++++ ++++...++.|+.||..+++.. .+ .....+.+++++++|+++++ . ++.|.+||..++.....
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~   88 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL   88 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence            3456888998654 5566667889999999877653 22 24567899999999995554 3 56788999765543333


Q ss_pred             eeCC---CcCcEEEEEEccCCCCCEEEEEeCC---------CeEEEEeCCC-ceeeEeeeCCccceEEEEEcCCCCEE-E
Q psy6984         144 VEDG---HSDWVSCVRFSPNHQNPIIVSAGWD---------RMVKVWNLTN-CKLKINHSGHTGYLNTVTVSPDGSLC-A  209 (380)
Q Consensus       144 ~~~~---~~~~v~~~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l-~  209 (380)
                      ....   ....++.+++.|++.  ++++...+         ..-.+|.+.. .+... ...+....+.++|+|+++.+ +
T Consensus        89 ~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           89 ATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             EECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred             EecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEE
Confidence            2211   223478899998764  45543221         2234444432 22222 22334457889999999865 5


Q ss_pred             EEcCCCcEEEEEC--CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeE
Q psy6984         210 SGGKDMNAMLWDL--NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLS  287 (380)
Q Consensus       210 ~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  287 (380)
                      +.+.++.|.+||+  .++......       .                          +..+.         ........
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~-------~--------------------------~~~~~---------~~~~~p~g  203 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRR-------S--------------------------VYKLE---------KEEQIPDG  203 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEE-------E--------------------------EEECC---------GGGCEEEE
T ss_pred             ecCCCCcEEEEeccCCCCcccCcE-------E--------------------------EEECC---------CCCCCCCe
Confidence            5666789999986  344321000       0                          00000         00112346


Q ss_pred             EEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEe-cCCCEEEEEee
Q psy6984         288 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS-TDGQTLFAGYS  364 (380)
Q Consensus       288 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~g~~  364 (380)
                      ++++++|++.++...++.|..|+..++..+.           .+..         ....+.+++|+ ||++.|+.++.
T Consensus       204 ~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~-----------~i~~---------p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          204 MCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ-----------TVKL---------PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEBTTSCEEEEEETTTEEEEECTTTCCEEE-----------EEEC---------SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             eEECCCCCEEEEEcCCCEEEEEcCCCceEEE-----------EEEC---------CCCCceEEEEeCCCCCEEEEEcC
Confidence            7888999888887778889999754333222           1111         11246789998 89888765543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.41  E-value=4.8e-10  Score=100.07  Aligned_cols=250  Identities=15%  Similarity=0.115  Sum_probs=158.0

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC--cEEEEECC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK--TLRLWDLA   94 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~   94 (380)
                      .....|+++++ ++++++...++.|++|+........ +    ... ..... ++++++++.|+++..++  .|.+++..
T Consensus       131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~-~----~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTT-V----HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEE-E----EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEE-e----ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence            46788999987 5677776777899999876432110 1    111 22233 89999999999998876  79999987


Q ss_pred             CCceeeee----cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe---eCCCcCcE--EEEEEccCCCCCE
Q psy6984          95 AGKTTRRF----EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV---EDGHSDWV--SCVRFSPNHQNPI  165 (380)
Q Consensus        95 ~~~~~~~~----~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~~v--~~~~~~~~~~~~~  165 (380)
                      .+.....+    ......+.+++++|++..|+.+..++.|..||..........   ..+....-  ..++|+|++. .+
T Consensus       203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g-~l  281 (409)
T 3hrp_A          203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS-NF  281 (409)
T ss_dssp             GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT-EE
T ss_pred             CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC-EE
Confidence            66544333    224456788999995555666777889999997655432221   11222222  2899999543 35


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEeeeCC---------------ccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEE
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINHSGH---------------TGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLH  229 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~  229 (380)
                      +++-..++.|+.|+......  ...++               -.....++++|+|+++++-. .+++|+.|++.++....
T Consensus       282 yv~d~~~~~I~~~~~~g~~~--~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~  359 (409)
T 3hrp_A          282 YMSDQNLSSVYKITPDGECE--WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST  359 (409)
T ss_dssp             EEEETTTTEEEEECTTCCEE--EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred             EEEeCCCCEEEEEecCCCEE--EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence            66667788999999765321  12222               23478999999999888888 89999999987765322


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                      .......         ..+                     ..+.   ...........++++|++.++++-..++.|+.+
T Consensus       360 ~~g~~~~---------~g~---------------------~~g~---~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          360 VAGQVDV---------ASQ---------------------IDGT---PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             EEECTTC---------BSC---------------------CCBS---TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             EeCCCCC---------CCc---------------------CCCC---hhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            2111100         000                     0000   000111345689999998888887777888766


Q ss_pred             e
Q psy6984         310 N  310 (380)
Q Consensus       310 ~  310 (380)
                      .
T Consensus       407 ~  407 (409)
T 3hrp_A          407 A  407 (409)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.39  E-value=1.3e-11  Score=108.04  Aligned_cols=169  Identities=13%  Similarity=0.071  Sum_probs=126.2

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCc---------eee-eecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGK---------TTR-RFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      .++.+++++...++++|+.+ .+.+|++.+.+         ... ....+.. |+.++|  |+..|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            57889999999999999998 56679865332         111 2224556 999999  89999998 8899999997


Q ss_pred             CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC
Q psy6984         136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM  215 (380)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  215 (380)
                      ..-...... ..+...+.++.+.+.    -++++..||.|.+||+++.....    +...|.+++|+|+|  ++.|..||
T Consensus       114 ~sl~~~~~~-~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg  182 (388)
T 1xip_A          114 EELSEFRTV-TSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDR  182 (388)
T ss_dssp             SSTTCEEEE-EECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTS
T ss_pred             hhhhccCcc-ceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCC
Confidence            654332222 234556777776653    27888999999999999766542    34579999999999  67899999


Q ss_pred             cEEEEECCCCcE--EEEE------E----ecCceEEEEeecCcccce
Q psy6984         216 NAMLWDLNDGKH--LHTL------V----HNDIITALCFSPNRSFQK  250 (380)
Q Consensus       216 ~i~i~d~~~~~~--~~~~------~----~~~~i~~~~~~~~~~~~~  250 (380)
                      .+++|+...++.  ...+      .    ++..+.+++|.++..+..
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence            999998877764  4444      1    456799999999877654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=1.6e-10  Score=100.86  Aligned_cols=263  Identities=12%  Similarity=0.086  Sum_probs=150.4

Q ss_pred             cceEEEEEccCCCEEEEEe--CCCcEEEEECCCCceeeee-------cccCCCeEEEEEeCCCCEEEEEeC-----CCcE
Q psy6984          65 HFISDIVLSSDGNYALSGS--WDKTLRLWDLAAGKTTRRF-------EDHTKDVLSVAFSVDNRQIVSSSR-----DKTI  130 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~s~~~-----d~~v  130 (380)
                      ..+..++++++|+.+++..  .++.++||.+.+++. ..+       ..+...+..++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5678999999999888864  234245555444543 222       124467899999999886665543     5789


Q ss_pred             EEEeCCCcceEEEeeC-----CCcCcEEEEEEccCCCCCEEEEEe---CCCeEEEEeCCCceeeEeeeCCccce-EEEEE
Q psy6984         131 KLWNTLAHCKFTIVED-----GHSDWVSCVRFSPNHQNPIIVSAG---WDRMVKVWNLTNCKLKINHSGHTGYL-NTVTV  201 (380)
Q Consensus       131 ~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~i-~~~~~  201 (380)
                      .+||+.++.....+..     .+......+++.+.+. .++++..   .++.|.+||+.+++......+|.... ....+
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999876653333321     1223467889987543 2445554   67899999998776655443332110 01233


Q ss_pred             cCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcC---Cce-----
Q psy6984         202 SPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN---HGK-----  273 (380)
Q Consensus       202 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----  273 (380)
                      .++|..+.+.+.++.+..|.             ..+..++++|++.......     .....++.++..   .+.     
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~-----~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSP-----MHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             EETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEE-----SSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             eECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEe-----CCCCeEEEEEHHHhcCCCCChhh
Confidence            44566666666676665553             1245677777764321111     011122222211   000     


Q ss_pred             eee--eeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984         274 MET--PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA  351 (380)
Q Consensus       274 ~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                      ...  ...+.......++++++|.++++...++.|.+|+...+....+...          +         .......++
T Consensus       237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~----------~---------~~~~p~~va  297 (343)
T 2qe8_A          237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD----------E---------KLSWTDSFN  297 (343)
T ss_dssp             HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC----------G---------GGSCEEEEE
T ss_pred             hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC----------C---------ceecCCeeE
Confidence            000  0111222345789999999999988899999998622221111100          0         112356889


Q ss_pred             EecCCCEEEEEeeCC
Q psy6984         352 WSTDGQTLFAGYSDN  366 (380)
Q Consensus       352 ~s~dg~~l~~g~~dg  366 (380)
                      +.++|+++++.+..+
T Consensus       298 ~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          298 FGSDGYLYFDCNQLH  312 (343)
T ss_dssp             ECTTSCEEEEECCGG
T ss_pred             ECCCCcEEEEeCccc
Confidence            999999888766443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.33  E-value=7.6e-10  Score=98.16  Aligned_cols=274  Identities=9%  Similarity=0.044  Sum_probs=171.3

Q ss_pred             CCeEEEeeC-C----CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCcEEEEEC
Q psy6984          29 PDTILSCSR-D----NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKTLRLWDL   93 (380)
Q Consensus        29 ~~~l~t~~~-d----g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~   93 (380)
                      +..++.+.. +    +.|.+.|.........++    .+. .+  .+.++|||++|+++.          .++.|.++|.
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~----vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD----GGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE----ECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE----CCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            455554443 3    699999976543222221    122 23  799999999888776          3678999999


Q ss_pred             CCCceeeeeccc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          94 AAGKTTRRFEDH-------TKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        94 ~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      .+++.+..+.--       ......++|+|||++++.+..  ++.|.+.|+.+......+.-+.     +....|.+. .
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~g~-~  230 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPASP-T  230 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEEET-T
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----ceeeccCCC-c
Confidence            999888776421       123456899999999998874  5789999988766554444322     133445443 3


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEee----eCCccc-eEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE--EEE-----
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINH----SGHTGY-LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH--TLV-----  232 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~----~~~~~~-i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~-----  232 (380)
                      .+++.+.||.+.+.++.+.+.....    .....+ ...+.+.+++..++..+..+.+.+.|........  .+.     
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~  310 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA  310 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence            5667777888888888555443211    101111 1234678888887777788999999986554221  111     


Q ss_pred             ------ecCceEEEEeecCcccceeeeeeee-e---ccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEEee
Q psy6984         233 ------HNDIITALCFSPNRSFQKIKLDISR-T---LQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVSSS  301 (380)
Q Consensus       233 ------~~~~i~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~  301 (380)
                            .......++++|++........... .   ...+.+.+++..+.+....+. .....+.++|+||++ .+++..
T Consensus       311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n  389 (426)
T 3c75_H          311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSINVSQDAEPLLYALS  389 (426)
T ss_dssp             TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEE
T ss_pred             ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEc
Confidence                  0111123577777654332221100 0   013468889988887765543 223577899999999 888777


Q ss_pred             -CCCcEEEEeccccee
Q psy6984         302 -RDKTIKLWNTLAHCK  316 (380)
Q Consensus       302 -~dg~v~iw~~~~~~~  316 (380)
                       .++.|.++|+.+...
T Consensus       390 ~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          390 AGTQTLHIYDAATGEE  405 (426)
T ss_dssp             TTTTEEEEEETTTCCE
T ss_pred             CCCCeEEEEECCCCCE
Confidence             589999998755443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.31  E-value=5.5e-10  Score=106.87  Aligned_cols=245  Identities=10%  Similarity=0.051  Sum_probs=146.9

Q ss_pred             cCCCcceEEEEEccCCCEEEEE-----eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCc------
Q psy6984          61 KGHSHFISDIVLSSDGNYALSG-----SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT------  129 (380)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~l~s~-----~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~------  129 (380)
                      .+|...+..+.|||||++||-+     +....|++||+.+++.+.... +......++|+ |++.|+.++.+..      
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccc
Confidence            3455678889999999998843     333579999999998654311 11112467899 9999998887743      


Q ss_pred             -------EEEEeCCCcce--EEEee-CC-CcCcEEEEEEccCCCCCEEEEEe---CCCeEEEEeCCCce-eeEeeeCCcc
Q psy6984         130 -------IKLWNTLAHCK--FTIVE-DG-HSDWVSCVRFSPNHQNPIIVSAG---WDRMVKVWNLTNCK-LKINHSGHTG  194 (380)
Q Consensus       130 -------v~iwd~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~-~~~~~~~~~~  194 (380)
                             |.+|++.+...  ..... .. +...+..+.++|+++. ++++.+   .+..|.++|+.+.. ....+..+..
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~  281 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF-LLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD  281 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-EEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-EEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence                   88898765432  22222 22 3455778999998764 334433   23589999997653 2223334444


Q ss_pred             ceEEEEEcCCCCEE-EEEcCC---CcEEEEECCCCcE---EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         195 YLNTVTVSPDGSLC-ASGGKD---MNAMLWDLNDGKH---LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       195 ~i~~~~~~~~~~~l-~~~~~d---~~i~i~d~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      ..... ++++|..| +....+   +.|..+|+.++..   .....+...+.  .|++++........   ......+.++
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~---~~g~~~l~~~  355 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM---VDATARVEQF  355 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE---ETTEEEEEEE
T ss_pred             ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE---ECCeeEEEEE
Confidence            44444 55666554 444443   6899999987653   22223333333  77777654332211   1122356777


Q ss_pred             EcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC----CcEEEEecccc
Q psy6984         268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAH  314 (380)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~  314 (380)
                      +...+............+..+.++|+++.|+....+    ++|+.||+.++
T Consensus       356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            776544332222333456677778888876655444    78888887554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.31  E-value=1.1e-08  Score=88.48  Aligned_cols=216  Identities=15%  Similarity=0.056  Sum_probs=139.5

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   96 (380)
                      .......|+|+.+.++++...++.|..|+......      ..+ .....+.++.++++|+++++. .+ .|.+||..++
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~------~~~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g  119 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRK------TVH-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATG  119 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE------EEE-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTC
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE------EEE-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCC
Confidence            34567788887555677777788999998754211      111 123468899999999877754 44 5999999887


Q ss_pred             ceeeeecc---c-CCCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEE
Q psy6984          97 KTTRRFED---H-TKDVLSVAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus        97 ~~~~~~~~---h-~~~v~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                      +.......   . ...+.+++++|+|+++++...      .+.|..++  .+ ...... ........++|+|+++. ++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~~~-~~~~~~~~i~~s~dg~~-ly  194 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTKLF-ADISIPNSICFSPDGTT-GY  194 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEEEE-EEESSEEEEEECTTSCE-EE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEEee-CCCcccCCeEEcCCCCE-EE
Confidence            75433221   1 235789999999997766542      23455555  22 222221 12234678999998643 34


Q ss_pred             EEEeCCCeEEEEeCC--Cc-ee-----eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEec-Cce
Q psy6984         167 VSAGWDRMVKVWNLT--NC-KL-----KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN-DII  237 (380)
Q Consensus       167 ~s~~~d~~v~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i  237 (380)
                      ++...++.|.+||+.  ++ .+     ..........+..+.++++|++.++...++.|.+||. +++.+..+... ..+
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~  273 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT  273 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence            555667899999985  44 21     1122223456788999999998877767789999998 56666666543 357


Q ss_pred             EEEEee-cCcc
Q psy6984         238 TALCFS-PNRS  247 (380)
Q Consensus       238 ~~~~~~-~~~~  247 (380)
                      .+++|+ ++..
T Consensus       274 ~~~af~g~d~~  284 (326)
T 2ghs_A          274 TCPAFIGPDAS  284 (326)
T ss_dssp             EEEEEESTTSC
T ss_pred             EEEEEecCCCC
Confidence            888887 6543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.30  E-value=2.3e-09  Score=91.91  Aligned_cols=229  Identities=11%  Similarity=0.091  Sum_probs=143.1

Q ss_pred             ccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCc
Q psy6984          60 LKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~  138 (380)
                      +...........|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+.. +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            344445677899999998 5667777889999998 444 34455556678999999999977766667889999865 3


Q ss_pred             ceEEEee--CC-CcCcEEEEEEccCCCCCEEEE----EeC-------------CCeEEEEeCCCceeeEeeeCCccceEE
Q psy6984         139 CKFTIVE--DG-HSDWVSCVRFSPNHQNPIIVS----AGW-------------DRMVKVWNLTNCKLKINHSGHTGYLNT  198 (380)
Q Consensus       139 ~~~~~~~--~~-~~~~v~~~~~~~~~~~~~l~s----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~i~~  198 (380)
                      .......  .+ ....++.+++.+++.  ++++    |..             .+.|..+|..+++.....  .....+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~g  192 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNG  192 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcc
Confidence            2222211  11 112356788988764  5665    321             256778887665544332  3446788


Q ss_pred             EEEcCCCCEEEEEcCC------CcEEEEECCCCcEEEE---EE--ecCceEEEEeecCcccceeeeeeeeeccccceEEE
Q psy6984         199 VTVSPDGSLCASGGKD------MNAMLWDLNDGKHLHT---LV--HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILY  267 (380)
Q Consensus       199 ~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~---~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (380)
                      ++|+|+++.|+.+...      +.|++|++..+. +..   +.  ....+..+++.+++....       .. ...+.+|
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-------~~-~~gv~~~  263 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-------SS-GTGVCVF  263 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-------CC-SSEEEEE
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-------ec-CCcEEEE
Confidence            9999999977766554      789999987654 211   11  122234455666554211       11 2346677


Q ss_pred             EcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcE
Q psy6984         268 PINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTI  306 (380)
Q Consensus       268 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v  306 (380)
                      +.. ++....+.. ...+.+++|+|+++.|..++.++..
T Consensus       264 ~~~-g~~~~~~~~-~~~~~~~~f~~d~~~L~it~~~~l~  300 (305)
T 3dr2_A          264 DSD-GQLLGHIPT-PGTASNCTFDQAQQRLFITGGPCLW  300 (305)
T ss_dssp             CTT-SCEEEEEEC-SSCCCEEEECTTSCEEEEEETTEEE
T ss_pred             CCC-CCEEEEEEC-CCceeEEEEeCCCCEEEEEcCCeEE
Confidence            663 433333322 2357889999999888877766433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.29  E-value=1.2e-09  Score=96.80  Aligned_cols=267  Identities=12%  Similarity=0.090  Sum_probs=155.7

Q ss_pred             ccCCCEEEEEeCC-----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCC
Q psy6984          73 SSDGNYALSGSWD-----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------RDKTIKLWNTLA  137 (380)
Q Consensus        73 ~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------~d~~v~iwd~~~  137 (380)
                      .++++++++....     +.|.++|..+++.+..+..-..+  .++++||+++++.+.          .++.|.++|..+
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            3577777766553     69999999999999888654445  899999999888775          467899999877


Q ss_pred             cceEEEeeCC---C---cCcEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEE
Q psy6984         138 HCKFTIVEDG---H---SDWVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLC  208 (380)
Q Consensus       138 ~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l  208 (380)
                      ......+.-+   .   ......++++|+++  .++.+.  .++.|.+.|+.+.+....+.-..  .  ....|++ +.+
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~  232 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVF  232 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEE
Confidence            6554443221   0   11234578999876  455444  26789999999988766554211  1  2334433 556


Q ss_pred             EEEcCCCcEEEEECCCCcEEEEE----EecC-c-eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceee--eeee-
Q psy6984         209 ASGGKDMNAMLWDLNDGKHLHTL----VHND-I-ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKME--TPFF-  279 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~~~~~~~~~----~~~~-~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-  279 (380)
                      ++.+.||.+.+.+..+++.....    .... + ...+.+++++.....      ....+.+.+.+.......  ..+. 
T Consensus       233 v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~------~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          233 YMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW------PTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             EEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE------EBTTSEEEEEEECSSCEEECCCEES
T ss_pred             EEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE------EeCCCcEEEEeccCCceEEeeeeee
Confidence            66777888888887555443211    0000 0 001222333221110      011234555555333211  0000 


Q ss_pred             ------c---cccceeEEEEeecCCEEEEeeC----------CCcEEEEecccceeeeEeecccceEEEeeCcccccccC
Q psy6984         280 ------S---LFRDVLSVAFSVDNRQIVSSSR----------DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQST  340 (380)
Q Consensus       280 ------~---~~~~v~~~~~s~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (380)
                            .   .......++++|+++.++....          ++.|.+.|           ..+.+.+..+....     
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID-----------~~T~kvv~~I~vg~-----  370 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLN-----------AETGERINKIELGH-----  370 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEE-----------TTTCCEEEEEEEEE-----
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEE-----------CCCCeEEEEEECCC-----
Confidence                  0   0011223688998877665432          23455554           45544444432211     


Q ss_pred             CCCCCceEEEEEecCCC-EEEEEe-eCCeEEEEEee
Q psy6984         341 KADPPMCLSLAWSTDGQ-TLFAGY-SDNTIRVWQVS  374 (380)
Q Consensus       341 ~~~~~~~~~~~~s~dg~-~l~~g~-~dg~v~iw~~~  374 (380)
                           ....++|+|||+ ++++.. .++.|.++|+.
T Consensus       371 -----~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          371 -----EIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             -----EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             -----CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence                 235789999999 888877 59999999974

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.23  E-value=7.3e-08  Score=85.05  Aligned_cols=305  Identities=11%  Similarity=0.063  Sum_probs=168.9

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCccccccccc--CC--CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecc
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK--GH--SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED  104 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~--~h--~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~  104 (380)
                      +..++.++.++.|..+|................  .+  ...+.. ....++..++.++.++.|..+|..+++.+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            357888888899999987654332211110000  00  112222 2223466888899999999999999988776654


Q ss_pred             cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCc----EEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984         105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDW----VSCVRFSPNHQNPIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       105 h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~~~d~~v~iwd~  180 (380)
                      ...........  +..++.++.++.+..+|..++.............    .......    ...++.+..++.+..+|.
T Consensus       132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~----~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA----FGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE----TTEEEECCTTTEEEEEET
T ss_pred             CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE----CCEEEEEcCCCEEEEEEC
Confidence            32211111222  4578888899999999987665544433211100    0111121    125777888999999999


Q ss_pred             CCceeeEeeeCCccc----eEE---EEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984         181 TNCKLKINHSGHTGY----LNT---VTVSP--DGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       181 ~~~~~~~~~~~~~~~----i~~---~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      .+++...........    +..   +...|  .+..+..++.++.+..+|..+++.+....... ...+....+.     
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~-----  279 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIVDGNR-----  279 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEEETTE-----
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceEECCE-----
Confidence            888776554321100    000   00111  24577778889999999999998876654332 2222222111     


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeecc-ccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEe
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSL-FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE  330 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  330 (380)
                         +.....++.+..++..+++..-..... .........  .+..|+.++.+|.|.++|..++..+........     
T Consensus       280 ---l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~-----  349 (376)
T 3q7m_A          280 ---IYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSS-----  349 (376)
T ss_dssp             ---EEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTT-----
T ss_pred             ---EEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----
Confidence               111223456777887777654322211 111222222  356788888899999998766544332221100     


Q ss_pred             eCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                                .    .......  .+..|+.++.+|.|..|+
T Consensus       350 ----------~----~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          350 ----------G----FQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ----------C----BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             ----------c----ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence                      0    0001111  245677788999998886

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.22  E-value=3.4e-08  Score=85.37  Aligned_cols=220  Identities=14%  Similarity=0.080  Sum_probs=134.3

Q ss_pred             eEEEEEccCCC-EEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984          67 ISDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        67 v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~  145 (380)
                      .....|+|+++ ++++...++.|..||..+++... +. ....+.+++++++|+++++. .+ .|.+||..++.......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            45788999754 55566678899999998775432 22 34678999999999877654 44 48899976554333322


Q ss_pred             CC---CcCcEEEEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCC
Q psy6984         146 DG---HSDWVSCVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDM  215 (380)
Q Consensus       146 ~~---~~~~v~~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~  215 (380)
                      ..   ....+.+++++|++.  ++++...      .+.|..++  +++... ...+....+.++|+|+++.++ +.+.++
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             CCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence            11   123578899999764  4544332      24566666  344332 222334577899999998664 455678


Q ss_pred             cEEEEECC--CC-cE--EEEEE----ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecccccee
Q psy6984         216 NAMLWDLN--DG-KH--LHTLV----HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL  286 (380)
Q Consensus       216 ~i~i~d~~--~~-~~--~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  286 (380)
                      .|.+||+.  ++ +.  ...+.    ....+..+++.+++.+...      ....+.+..|+. .++....+......+.
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva------~~~~~~v~~~d~-~g~~~~~i~~~~~~~~  274 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA------RWGEGAVDRYDT-DGNHIARYEVPGKQTT  274 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE------EETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE------EeCCCEEEEECC-CCCEEEEEECCCCCcE
Confidence            99999986  55 21  01111    1234566777776643211      112345777776 3444333333345688


Q ss_pred             EEEEe-ecCCEEEEeeC
Q psy6984         287 SVAFS-VDNRQIVSSSR  302 (380)
Q Consensus       287 ~~~~s-~~~~~l~s~~~  302 (380)
                      +++|+ |+++.|+.++.
T Consensus       275 ~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          275 CPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEESTTSCEEEEEEB
T ss_pred             EEEEecCCCCEEEEEec
Confidence            99998 88877655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.21  E-value=6.9e-09  Score=88.86  Aligned_cols=220  Identities=13%  Similarity=0.108  Sum_probs=140.6

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +..+........|.|+...++++...++.|..|+....       ...+..+...+..++++++|+++++...++.|.+|
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence            34455677788899873336777778899999976321       11233345568899999999977766666889999


Q ss_pred             ECCCCceeeeeccc----CCCeEEEEEeCCCCEEEE----EeC-------------CCcEEEEeCCCcceEEEeeCCCcC
Q psy6984          92 DLAAGKTTRRFEDH----TKDVLSVAFSVDNRQIVS----SSR-------------DKTIKLWNTLAHCKFTIVEDGHSD  150 (380)
Q Consensus        92 d~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s----~~~-------------d~~v~iwd~~~~~~~~~~~~~~~~  150 (380)
                      +.. ++........    ...+.+++++|+|+..++    |..             .+.|..+|..++......   ...
T Consensus       113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~  188 (305)
T 3dr2_A          113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLD  188 (305)
T ss_dssp             CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EES
T ss_pred             CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCC
Confidence            986 5433222111    124667999999998886    332             245677775443322222   233


Q ss_pred             cEEEEEEccCCCCCEEEEEeCC------CeEEEEeCCCceee---EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEE
Q psy6984         151 WVSCVRFSPNHQNPIIVSAGWD------RMVKVWNLTNCKLK---INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD  221 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d  221 (380)
                      ....++|+|+++  .|+.+...      +.|..|++....+.   .........+..+.++++|++.++ ..+ .|.+|+
T Consensus       189 ~p~gl~~spdg~--~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~  264 (305)
T 3dr2_A          189 HPNGLAFSPDEQ--TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFD  264 (305)
T ss_dssp             SEEEEEECTTSS--EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEEC
T ss_pred             CCcceEEcCCCC--EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEEC
Confidence            467899999865  34444433      78999998654311   111112334567889999995544 444 599999


Q ss_pred             CCCCcEEEEEEecCceEEEEeecCcc
Q psy6984         222 LNDGKHLHTLVHNDIITALCFSPNRS  247 (380)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~~~~~~~~~  247 (380)
                      . .++.+..+..+..+..++|++++.
T Consensus       265 ~-~g~~~~~~~~~~~~~~~~f~~d~~  289 (305)
T 3dr2_A          265 S-DGQLLGHIPTPGTASNCTFDQAQQ  289 (305)
T ss_dssp             T-TSCEEEEEECSSCCCEEEECTTSC
T ss_pred             C-CCCEEEEEECCCceeEEEEeCCCC
Confidence            8 577777776666678888886653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=1.3e-08  Score=88.71  Aligned_cols=234  Identities=12%  Similarity=0.064  Sum_probs=144.2

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEee--CCCeEEEeecCCCCCCccccc--ccccCCCcceEEEEEccCCCEEEE
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCS--RDNTLIIWKLTRDDTNYGVPQ--KRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~--~dg~v~vw~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      +++++.+.   ..+..|+++|+ ++++++..  .++.++||.+. .......+.  ....+|...+..++++++++++++
T Consensus         9 ~~~v~~~~---~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~   83 (343)
T 2qe8_A            9 LEVVAELS---LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWML   83 (343)
T ss_dssp             CEEEEEES---SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred             eEEEEEcC---CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence            45555554   68899999987 67777754  23446777765 211111111  112345567899999999876665


Q ss_pred             EeC-----CCcEEEEECCCCceeeeeccc------CCCeEEEEEeCCCCEE-EEEe---CCCcEEEEeCCCcceEEEeeC
Q psy6984          82 GSW-----DKTLRLWDLAAGKTTRRFEDH------TKDVLSVAFSVDNRQI-VSSS---RDKTIKLWNTLAHCKFTIVED  146 (380)
Q Consensus        82 ~~~-----d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~-~s~~---~d~~v~iwd~~~~~~~~~~~~  146 (380)
                      -..     +..|.+||+.+++.+..+...      ...+..+++++++..+ ++..   .++.|.+||..++...... .
T Consensus        84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~  162 (343)
T 2qe8_A           84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL-Q  162 (343)
T ss_dssp             ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC-T
T ss_pred             cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe-c
Confidence            433     578999999998876665421      2346789999865554 5555   5789999997655433322 1


Q ss_pred             CC-----------------------------cCcEEEEEEccCCCCCEEEEEeCCC-eEEEEeCC---Cce-----e--e
Q psy6984         147 GH-----------------------------SDWVSCVRFSPNHQNPIIVSAGWDR-MVKVWNLT---NCK-----L--K  186 (380)
Q Consensus       147 ~~-----------------------------~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~---~~~-----~--~  186 (380)
                      +|                             ...+..++++|+++  .|+.+...+ .+..++..   ...     .  .
T Consensus       163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~--~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (343)
T 2qe8_A          163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE--WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK  240 (343)
T ss_dssp             TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC--EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred             CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC--EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence            11                             02357899999764  455554444 55444431   100     0  0


Q ss_pred             EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe--cCceEEEEeecCcc
Q psy6984         187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH--NDIITALCFSPNRS  247 (380)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~~~~~~  247 (380)
                      ....++......++++++|+++++...++.|.+||..+++.......  -..+..+++.+++.
T Consensus       241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence            01123344567799999999999999999999999856653322222  23467777776543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=8.2e-09  Score=98.76  Aligned_cols=242  Identities=10%  Similarity=0.043  Sum_probs=143.0

Q ss_pred             CcccceEEEEeCCCCCCeEE-E----eeCCCeEEEeecCCCCCCcccccccccCCCcc--eEEEEEccCCCEEEEEeCCC
Q psy6984          14 GHNGWVTQIATNPKFPDTIL-S----CSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF--ISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~-t----~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~   86 (380)
                      +|...+..+.|+|+ +++|| +    |+.+.+|++||+......        ..+...  ...++|+ ||+.|+.++.+.
T Consensus       126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~  195 (693)
T 3iuj_A          126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPL--------ETPLKDVKFSGISWL-GNEGFFYSSYDK  195 (693)
T ss_dssp             TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEE--------EEEEEEEESCCCEEE-TTTEEEEEESSC
T ss_pred             CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCC--------ccccCCceeccEEEe-CCCEEEEEEecC
Confidence            45567888999998 56666 2    334468999998754311        111112  2567899 999999888774


Q ss_pred             -------------cEEEEECCCCce--eeee--cc-cCCCeEEEEEeCCCCEEEEEeC----CCcEEEEeCCCcc-eEEE
Q psy6984          87 -------------TLRLWDLAAGKT--TRRF--ED-HTKDVLSVAFSVDNRQIVSSSR----DKTIKLWNTLAHC-KFTI  143 (380)
Q Consensus        87 -------------~i~vwd~~~~~~--~~~~--~~-h~~~v~~~~~~~~~~~~~s~~~----d~~v~iwd~~~~~-~~~~  143 (380)
                                   .|++|++.++..  ...+  .. |...+..+.|+|||++++....    .+.+.++|+.... ....
T Consensus       196 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          196 PDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             CC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             cccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                         399999987653  2222  23 4445788999999998764432    2478899875542 2222


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeC---CCeEEEEeCCCcee--eEeeeCCccceEEEEEcCCCCEEEEEcCCC---
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGW---DRMVKVWNLTNCKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDM---  215 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---  215 (380)
                      +. .+.+..... +.+++.. +++....   .+.|..+|+.+...  ...+..|...+.  .++++++.|+....++   
T Consensus       276 l~-~~~~~~~~~-~~~~g~~-l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          276 VQ-GDLDADVSL-VDNKGST-LYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             EE-CSSSSCEEE-EEEETTE-EEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred             Ee-CCCCceEEE-EeccCCE-EEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence            22 233333333 4454443 3444433   36799999987543  123334444444  8899998877665543   


Q ss_pred             cEEEEECCCCcEEEEEEe--cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984         216 NAMLWDLNDGKHLHTLVH--NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK  273 (380)
Q Consensus       216 ~i~i~d~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (380)
                      .|++||+..+ ....+..  ...+..+.+++++....+..  .....-..++.+++.+++
T Consensus       351 ~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~--ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          351 RVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGF--ENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEE--ECSSSCCEEEEECTTTCC
T ss_pred             EEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEe--cCCCCCCEEEEEECCCCe
Confidence            6889998744 4444433  23455666666654433221  111223456666665554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=2.6e-07  Score=81.33  Aligned_cols=236  Identities=16%  Similarity=0.147  Sum_probs=136.2

Q ss_pred             CCCCEEE-EEeCCCcEEEEeCCCc---ceE-EEee------CCCcCcEEEEEEccCCCCCEEEEEeCC------CeEEEE
Q psy6984         116 VDNRQIV-SSSRDKTIKLWNTLAH---CKF-TIVE------DGHSDWVSCVRFSPNHQNPIIVSAGWD------RMVKVW  178 (380)
Q Consensus       116 ~~~~~~~-s~~~d~~v~iwd~~~~---~~~-~~~~------~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~v~iw  178 (380)
                      ++.++++ ++..++.|.++|+.+.   .++ ..++      ..-...-..+.+.|++   +++++..+      +.|.++
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG---i~Vs~~g~~~g~~~g~v~vl  169 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA---IYISALGNEEGEGPGGILML  169 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC---EEEEEEEETTSCSCCEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe---EEEEcCCCcCCCCCCeEEEE
Confidence            7777765 5667889999997533   122 2221      0001123456677765   55555444      789999


Q ss_pred             eCCCceeeEeeeCC--c-cceEEEEEcCCCCEEEEEc-------------------CCCcEEEEECCCCcEEEEEEec--
Q psy6984         179 NLTNCKLKINHSGH--T-GYLNTVTVSPDGSLCASGG-------------------KDMNAMLWDLNDGKHLHTLVHN--  234 (380)
Q Consensus       179 d~~~~~~~~~~~~~--~-~~i~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~--  234 (380)
                      |.++.+.+......  . .....+.|+|+++.+++..                   .+.+|.+||+.+++.+..+...  
T Consensus       170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            99988776655421  1 2234577899999888874                   4789999999998877777654  


Q ss_pred             -CceEEEEe--ecCcccceeeeeeeeeccccceEEEEcCCcee-------------eeeee-------ccccceeEEEEe
Q psy6984         235 -DIITALCF--SPNRSFQKIKLDISRTLQKSNLILYPINHGKM-------------ETPFF-------SLFRDVLSVAFS  291 (380)
Q Consensus       235 -~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-------~~~~~v~~~~~s  291 (380)
                       .....+.|  +|++.+..+..++...-..+.+.+|..+.+..             ...+.       ........+.+|
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence             23444544  88887765554422111233444433322221             11000       002346789999


Q ss_pred             ecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEeeCccccc------ccCCCCCCceEEEEEecCCCEEEEEe
Q psy6984         292 VDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVS------QSTKADPPMCLSLAWSTDGQTLFAGY  363 (380)
Q Consensus       292 ~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s~dg~~l~~g~  363 (380)
                      |||++|+.+.. .+.|.++++......        +.+......-..      ...+ -.+.-..+++||||++|+++.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~--------~lv~~I~tGG~~~~~~~~~G~~-~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKP--------VLTGKVKLGGIFHRADHPAGHK-LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSC--------EEEEEEECBTTTTCBCCTTSCC-CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCc--------EEEEEEEeCCeecccccccccc-CCCCCCEEEEcCCCCEEEEEc
Confidence            99999887665 689999987533211        112211111000      0000 001123578999999999887

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=1.2e-07  Score=90.23  Aligned_cols=283  Identities=9%  Similarity=0.040  Sum_probs=163.7

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCccccccccc-------CCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-------GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR  101 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  101 (380)
                      +..++.++.++.|..+|....+...........       .+. ....+.+  ++..++.++.|+.|..+|..+|+.+.+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDV-VNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCS-CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccC-CCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence            346777777788888876543322211110000       000 0012222  467899999999999999999999887


Q ss_pred             eccc-C----CCeEEEEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCCCcC--------------------
Q psy6984         102 FEDH-T----KDVLSVAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDGHSD--------------------  150 (380)
Q Consensus       102 ~~~h-~----~~v~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~--------------------  150 (380)
                      +... .    ..+..--.- .+..++.++.      ++.|..+|..++............                    
T Consensus       154 ~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             ecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            7644 1    112111111 2344555443      689999998877665444321111                    


Q ss_pred             -----------cEEEEEEccCCCCCEEEEEeCCC-------------------eEEEEeCCCceeeEeeeC--Cc-----
Q psy6984         151 -----------WVSCVRFSPNHQNPIIVSAGWDR-------------------MVKVWNLTNCKLKINHSG--HT-----  193 (380)
Q Consensus       151 -----------~v~~~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~--~~-----  193 (380)
                                 ....+++.|...  .++.+..++                   .|..+|.++++....+..  |.     
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~--~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~  310 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELN--TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT  310 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTT--EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CceeEeCCCcccccceeEcCCCC--EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence                       002356666543  555555443                   599999999887766542  21     


Q ss_pred             --cceEEEEEcCCC---CEEEEEcCCCcEEEEECCCCcEEEEEEecC------------ce-------------------
Q psy6984         194 --GYLNTVTVSPDG---SLCASGGKDMNAMLWDLNDGKHLHTLVHND------------II-------------------  237 (380)
Q Consensus       194 --~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~i-------------------  237 (380)
                        ....-+....+|   ..++.++.+|.++++|..+|+.+.......            ++                   
T Consensus       311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~  390 (677)
T 1kb0_A          311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY  390 (677)
T ss_dssp             CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred             cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence              122223334477   688999999999999999999887664221            00                   


Q ss_pred             -----EEEEeecCcccceeeeee-----ee--------------------------------eccccceEEEEcCCceee
Q psy6984         238 -----TALCFSPNRSFQKIKLDI-----SR--------------------------------TLQKSNLILYPINHGKME  275 (380)
Q Consensus       238 -----~~~~~~~~~~~~~~~~~~-----~~--------------------------------~~~~~~~~~~~~~~~~~~  275 (380)
                           ..++++|+.....+....     ..                                ....+.+..++..+++..
T Consensus       391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~  470 (677)
T 1kb0_A          391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA  470 (677)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence                 023455543322111000     00                                001255777888888764


Q ss_pred             eeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         276 TPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       276 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                      -... +..+++...+..++..++.++.||.+++||..++..+.
T Consensus       471 W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          471 WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence            3332 23344556677888899999999999999876655443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.11  E-value=1e-07  Score=90.74  Aligned_cols=284  Identities=8%  Similarity=0.027  Sum_probs=161.6

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCccccccc----ccCCC-cce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKR----LKGHS-HFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF  102 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~----~~~h~-~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  102 (380)
                      +..++.++.++.|..+|....+.........    ..... ..+ ..+.+  ++..++.++.|+.|..+|..+|+.+.++
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            3567777778888888876543322211100    00000 001 11222  3568899999999999999999988776


Q ss_pred             ccc--CCCeEEEEEeC---CCCEEEEEe------CCCcEEEEeCCCcceEEEeeCCC-c---------------------
Q psy6984         103 EDH--TKDVLSVAFSV---DNRQIVSSS------RDKTIKLWNTLAHCKFTIVEDGH-S---------------------  149 (380)
Q Consensus       103 ~~h--~~~v~~~~~~~---~~~~~~s~~------~d~~v~iwd~~~~~~~~~~~~~~-~---------------------  149 (380)
                      ...  ......+..+|   ++. ++.++      .++.|..||..++.......... .                     
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            532  11101111112   444 44443      36899999988776654433110 0                     


Q ss_pred             --------CcEEEEEEccCCCCCEEEEEeCCC-------------------eEEEEeCCCceeeEeeeC--Cc-------
Q psy6984         150 --------DWVSCVRFSPNHQNPIIVSAGWDR-------------------MVKVWNLTNCKLKINHSG--HT-------  193 (380)
Q Consensus       150 --------~~v~~~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~--~~-------  193 (380)
                              .....+++.|..  .+++.+..++                   .|..+|.++++....+..  |.       
T Consensus       227 w~~~~~g~~~w~~~~~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~  304 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPEL--NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT  304 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeecCCCCccccceeEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence                    000145666653  3566666665                   399999999988766543  21       


Q ss_pred             cceEEEEEcCCCC---EEEEEcCCCcEEEEECCCCcEEEEEEecC--ce-------------------------------
Q psy6984         194 GYLNTVTVSPDGS---LCASGGKDMNAMLWDLNDGKHLHTLVHND--II-------------------------------  237 (380)
Q Consensus       194 ~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~i-------------------------------  237 (380)
                      ..+.-.....+|+   .++.++.+|.++++|..+|+.+.......  ..                               
T Consensus       305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~  384 (689)
T 1yiq_A          305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA  384 (689)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred             CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence            1122222233565   78899999999999999999875443211  00                               


Q ss_pred             -------EEEEeecCcccceeeee-----e--eee------------c--------------------cccceEEEEcCC
Q psy6984         238 -------TALCFSPNRSFQKIKLD-----I--SRT------------L--------------------QKSNLILYPINH  271 (380)
Q Consensus       238 -------~~~~~~~~~~~~~~~~~-----~--~~~------------~--------------------~~~~~~~~~~~~  271 (380)
                             ..++++|+.....+...     .  ...            .                    ..+.+..|+..+
T Consensus       385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t  464 (689)
T 1yiq_A          385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK  464 (689)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred             cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence                   01344444322111000     0  000            0                    025577889888


Q ss_pred             ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                      ++..-.... ..+...-.+...+..++.|+.||.++.||..+++.+.
T Consensus       465 G~~~W~~~~-~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          465 QQAAWEVPY-VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             TEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCeEeEccC-CCCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence            876543322 2333444667788899999999999999876655543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=3.9e-11  Score=105.71  Aligned_cols=149  Identities=15%  Similarity=0.152  Sum_probs=83.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  154 (380)
                      ++..+++++.|+.|+.||..+|+.+.++..  +.+.+..+..++..+++++.|+.+..||..++.............+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~-   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ-   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence            578999999999999999999999888765  45555556677878888889999999997655443322211111010 


Q ss_pred             EEEccCC-CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         155 VRFSPNH-QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       155 ~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                        ..|-- ....+++++.++.|+.||..+++....+..+.    ...++|++..+++++.|+.|+.||..+++.+..+.
T Consensus        85 --~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           85 --ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             --TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             --cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence              01110 12256778889999999999888766554432    23456788899999999999999999988665543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.10  E-value=7.3e-09  Score=89.59  Aligned_cols=318  Identities=13%  Similarity=0.039  Sum_probs=167.8

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++.++...+.-+.....+.....+  ..+..++.++.|..|| .......     ........+.++...+++. |..++
T Consensus         7 ~~g~~~W~~~~~~~~~~~~~~d~~--g~l~v~t~~~~l~~~d-~~g~~~~-----~~~~~~~~~~~~~~~~~g~-l~v~t   77 (330)
T 3hxj_A            7 NDCKIKWEFLIGNSIDSSPILAKN--GTIYLGSSNKNLYAIN-TDGSVKW-----FFKSGEIIECRPSIGKDGT-IYFGS   77 (330)
T ss_dssp             -----CCTTTSCEEECCCCEECTT--SCEECSSTTTTTEEEC-TTSCEEE-----SSCGGGEEEECCEETTTTE-ECCSS
T ss_pred             CCceEEEEEeCCCCcccCceEccC--CeEEEEcCCCEEEEEC-CCCcEEE-----EEecCCCcccceEEecCCc-EEEec
Confidence            344444444444333334444333  3577777788888888 4332211     1122233456677776665 55555


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .+  |..+|. +++....+...........+.  +..+..++.++.+..+|.. +....... .....+.++...+++  
T Consensus        78 ~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g--  148 (330)
T 3hxj_A           78 DK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDG--  148 (330)
T ss_dssp             CE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTS--
T ss_pred             Cc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCC--
Confidence            54  888886 555554443322222223333  5567788888999999876 43332222 223334455555443  


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe-cCceEEEEe
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH-NDIITALCF  242 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~i~~~~~  242 (380)
                       .+..++.++.|..+|.. ++...........+.++..++++.+++..   +.+..+| .+++....... ...+.++..
T Consensus       149 -~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~  222 (330)
T 3hxj_A          149 -TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAI  222 (330)
T ss_dssp             -CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEE
T ss_pred             -EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEE
Confidence             36667778999999998 66555554444556777777888765544   7899999 67776655432 233455555


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL  322 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  322 (380)
                      .+++....       ....+.+..++. .++....+......+..+...+++ .|..++.+|.|..+|. ++........
T Consensus       223 ~~~g~l~v-------~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~  292 (330)
T 3hxj_A          223 SEDGTIYV-------TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET  292 (330)
T ss_dssp             CTTSCEEE-------EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC
T ss_pred             CCCCeEEE-------EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc
Confidence            55432211       112334444542 232222222111222334444445 4556677888888874 3322221111


Q ss_pred             ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeee
Q psy6984         323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~  376 (380)
                      .                    ...+.++...++|+++ .|+.+|.+++......
T Consensus       293 ~--------------------~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          293 G--------------------SWIIATPVIDENGTIY-FGTRNGKFYALFNLEH  325 (330)
T ss_dssp             S--------------------SCCCSCCEECTTCCEE-EECTTSCEEEEEC---
T ss_pred             C--------------------CccccceEEcCCCEEE-EEcCCCeEEEEecccc
Confidence            0                    1123345556778754 5889999998876543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.08  E-value=3.7e-11  Score=105.90  Aligned_cols=193  Identities=9%  Similarity=0.042  Sum_probs=107.4

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD  108 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~  108 (380)
                      +..+++++.||.|..||....+.....     ..  ..+.+..+..++..+++++.|+.|+.||..+++.+..+..+...
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~-----~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTL-----KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE   81 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEE-----EC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEe-----cC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence            468999999999999997655433221     11  23334444567778888889999999999998877665443211


Q ss_pred             -eEE-EEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee
Q psy6984         109 -VLS-VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK  186 (380)
Q Consensus       109 -v~~-~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  186 (380)
                       +.+ ..+ .++..+++++.|+.+..||..++........ +.    ...++|.  ...+++++.|+.|+.||.++++..
T Consensus        82 ~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~--~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           82 LVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPS--TSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             HHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             ccccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----ccccccc--CCEEEEEecCCEEEEEECCCCCEE
Confidence             100 011 1345677888899999999876655433221 11    2344553  336778888999999999988765


Q ss_pred             EeeeCCccceEEEEEcCCC---CEEEEEcCCCcEEEEECCCCcEEEEEEecCceE
Q psy6984         187 INHSGHTGYLNTVTVSPDG---SLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                      .....+.  .....++++.   ..+++++.|+.++.||..+++.+.......++.
T Consensus       154 W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~  206 (369)
T 2hz6_A          154 WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV  206 (369)
T ss_dssp             CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE
T ss_pred             EeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE
Confidence            4433211  1222333432   456778899999999999999888776665554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.07  E-value=1.3e-08  Score=88.80  Aligned_cols=264  Identities=8%  Similarity=-0.059  Sum_probs=156.6

Q ss_pred             eEEEeeCCC----eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----------CCCcEEEEECCCC
Q psy6984          31 TILSCSRDN----TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----------WDKTLRLWDLAAG   96 (380)
Q Consensus        31 ~l~t~~~dg----~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~vwd~~~~   96 (380)
                      .+++-..++    +|.+.|.........++    .+.. +  .+.++||+++++++.          .++.|.+||+.++
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~----vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSL----GAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEE----ECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEe----CCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            344444455    77888876543222111    2332 3  699999999998886          3678999999999


Q ss_pred             ceeeeeccc-------CCCeEEEEEeCCCCEEEEEeC--CCcEEE--EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          97 KTTRRFEDH-------TKDVLSVAFSVDNRQIVSSSR--DKTIKL--WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        97 ~~~~~~~~h-------~~~v~~~~~~~~~~~~~s~~~--d~~v~i--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      +.+.++...       ......++++|||++++.+..  +..+.+  +|..+   ...+..+.     |..+.|++.. .
T Consensus       107 ~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-----~~~~~p~g~~-~  177 (368)
T 1mda_H          107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-----CFHIHPGAAA-T  177 (368)
T ss_dssp             CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-----CCCCEEEETT-E
T ss_pred             CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-----ceEEccCCCe-E
Confidence            998887533       123567899999999998864  467888  88755   22222111     1223454443 4


Q ss_pred             EEEEeCCCeEEEEeCCC-----ceeeEe----eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEEEe-
Q psy6984         166 IVSAGWDRMVKVWNLTN-----CKLKIN----HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK--HLHTLVH-  233 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~-----~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~-  233 (380)
                      +++.+.|+.+.+.|+.+     ++....    ..-...+.   . .+++..++..+. +.+.+.|.....  .+..+.. 
T Consensus       178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~  252 (368)
T 1mda_H          178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred             EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence            55666788888888876     332210    11111222   3 566666555556 899999986532  2222211 


Q ss_pred             ----------cCceEEEEeecCcccceeeee-e-ee-eccccceEEEEcCCceeeeeeeccccceeEEEEeecCC-EEEE
Q psy6984         234 ----------NDIITALCFSPNRSFQKIKLD-I-SR-TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR-QIVS  299 (380)
Q Consensus       234 ----------~~~i~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s  299 (380)
                                +.....++++|++........ . .. ........+++..+.+....+.- ......++|+|||+ .+++
T Consensus       253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEE
T ss_pred             cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCCCCEEEEE
Confidence                      111112568887654332221 0 00 00012345888888776554432 23577899999998 4666


Q ss_pred             ee-CCCcEEEEeccccee
Q psy6984         300 SS-RDKTIKLWNTLAHCK  316 (380)
Q Consensus       300 ~~-~dg~v~iw~~~~~~~  316 (380)
                      .. .+++|.++|+.+.+.
T Consensus       332 ~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          332 NSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EETTTTEEEEEESSSCEE
T ss_pred             ccCCCCeEEEEECCCCcE
Confidence            66 589999998755443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.03  E-value=1.9e-07  Score=88.96  Aligned_cols=155  Identities=10%  Similarity=0.052  Sum_probs=99.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccCCC---------e--EEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD---------V--LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~---------v--~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      +..+++++.++.|+.+|..+|+.+.++......         +  ..++.  ++..++.++.|+.+..+|..++......
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            567888888999999999999998877543210         0  11222  3668888999999999998877665444


Q ss_pred             eCC-CcCcEEEEEEccCCCCCEEEEEe------CCCeEEEEeCCCceeeEeeeCC---c---------------------
Q psy6984         145 EDG-HSDWVSCVRFSPNHQNPIIVSAG------WDRMVKVWNLTNCKLKINHSGH---T---------------------  193 (380)
Q Consensus       145 ~~~-~~~~v~~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~---~---------------------  193 (380)
                      ... +......+...|--....++.+.      .++.|..||.++++....+...   .                     
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            332 11110000001100011344443      3689999999998876554310   0                     


Q ss_pred             -------cceEEEEEcCCCCEEEEEcCCCc-------------------EEEEECCCCcEEEEEE
Q psy6984         194 -------GYLNTVTVSPDGSLCASGGKDMN-------------------AMLWDLNDGKHLHTLV  232 (380)
Q Consensus       194 -------~~i~~~~~~~~~~~l~~~~~d~~-------------------i~i~d~~~~~~~~~~~  232 (380)
                             .....++++|++.+++.+..++.                   |..+|..+|+.+..+.
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~  292 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ  292 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee
Confidence                   01125788998899988887763                   9999999999887765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=5.5e-08  Score=92.41  Aligned_cols=151  Identities=9%  Similarity=0.029  Sum_probs=99.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccCCC-----------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD-----------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~-----------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      +..|+.++.++.|+.+|..+|+.+.++......           ...++.  ++..++.++.|+.+..+|..++......
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            567788888899999999999988876543210           112232  4668888899999999998777665544


Q ss_pred             eCC-Cc---CcEE-EEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCcc-------------------
Q psy6984         145 EDG-HS---DWVS-CVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHTG-------------------  194 (380)
Q Consensus       145 ~~~-~~---~~v~-~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~-------------------  194 (380)
                      ... ..   ..+. ...+. +   ..++.++.      ++.|+.+|..+++..........                   
T Consensus       155 ~~~~~~~~~~~~~~~p~v~-~---~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVF-K---GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEE-T---TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             cCCcCcCcCcccccCcEEE-C---CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence            432 10   0111 11111 1   23444443      68999999999887665432111                   


Q ss_pred             -------------ceEEEEEcCCCCEEEEEcCCC-------------------cEEEEECCCCcEEEEEE
Q psy6984         195 -------------YLNTVTVSPDGSLCASGGKDM-------------------NAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       195 -------------~i~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~  232 (380)
                                   ....++++|++..+..+..++                   .|..+|..+++.+..+.
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~  300 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ  300 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence                         113478899988888887664                   49999999999887765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.98  E-value=3.7e-06  Score=74.04  Aligned_cols=226  Identities=11%  Similarity=0.039  Sum_probs=132.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccC---------CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT---------KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~  145 (380)
                      ++..+++++.++.|..+|..+++.+..+....         ..+.+ ....++..++.++.++.+..+|..++.......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            36788888989999999999998876654321         22222 222346678888999999999987665543332


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccce-----EEEEEcCCCCEEEEEcCCCcEEEE
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL-----NTVTVSPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~d~~i~i~  220 (380)
                      ... .........    ...++.++.++.|..+|..+++............     ......  +..++.+..++.+..+
T Consensus       131 ~~~-~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~  203 (376)
T 3q7m_A          131 VAG-EALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV  203 (376)
T ss_dssp             CSS-CCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred             CCC-ceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence            211 111111121    2257778889999999999887765554322110     112222  4467778889999999


Q ss_pred             ECCCCcEEEEEEecCceEE--------EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         221 DLNDGKHLHTLVHNDIITA--------LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       221 d~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      |..+++.+.......+...        +...|-    ...-.+......+.+..++..+++..-...  ......+.  .
T Consensus       204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~--~  275 (376)
T 3q7m_A          204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV----VVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFI--V  275 (376)
T ss_dssp             ETTTCCEEEEEECCC-----------CCCCCCE----EETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEE--E
T ss_pred             ECCCCcEEEEEecccCCCCcccccccccCCCcE----EECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCce--E
Confidence            9999998876653321100        000110    000011112234567777777666442211  11222332  3


Q ss_pred             cCCEEEEeeCCCcEEEEeccccee
Q psy6984         293 DNRQIVSSSRDKTIKLWNTLAHCK  316 (380)
Q Consensus       293 ~~~~l~s~~~dg~v~iw~~~~~~~  316 (380)
                      ++..++.++.++.|..+|..++..
T Consensus       276 ~~~~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          276 DGNRIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             ETTEEEEEETTCCEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcE
Confidence            567777788899999998765543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.95  E-value=5.1e-06  Score=69.37  Aligned_cols=220  Identities=9%  Similarity=0.004  Sum_probs=135.6

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~   95 (380)
                      ..+..+++++....++++-...+.|.++++......     ............+++++++..|+.+ ...+.|.++++..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            345688888864455555566789999987643211     1111122356889999976666555 4567899999875


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      ................++++|++..+..+..   .+.|..++.......... .........+++++++.. ++++....
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~-~~~~~~P~gia~d~~~~~-lyv~d~~~  188 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-QDNLGLPNGLTFDAFSSQ-LCWVDAGT  188 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-CTTCSCEEEEEEETTTTE-EEEEETTT
T ss_pred             CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE-ECCCCCCcEEEEcCCCCE-EEEEECCC
Confidence            4332222222245789999997666655543   367877776543322222 122345778999986542 45566667


Q ss_pred             CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC--ceEEEEeecC
Q psy6984         173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND--IITALCFSPN  245 (380)
Q Consensus       173 ~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~~~~  245 (380)
                      +.|..+|+..........+ ......+++. .+.++++....+.|..+|..+++.+..+....  ....+++.|+
T Consensus       189 ~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             TEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            8999999976543333332 2345667665 45555666667899999999998877765332  3455555554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=1.1e-05  Score=67.40  Aligned_cols=248  Identities=11%  Similarity=0.049  Sum_probs=137.4

Q ss_pred             CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeeecccCCCeEEEEEeCC
Q psy6984          39 NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD  117 (380)
Q Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~  117 (380)
                      +.|+.+++.............+......+..++++++++.|+.+. .++.|.++++..+...............++++++
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            477888776432110000001111123467899999766666554 5689999998766543333322346789999997


Q ss_pred             CCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC--CCeEEEEeCCCceeeEeeeCCcc
Q psy6984         118 NRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW--DRMVKVWNLTNCKLKINHSGHTG  194 (380)
Q Consensus       118 ~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~  194 (380)
                      +..+. +-...+.|.+++............+ ......++++|++.. ++++...  .+.|..+++..............
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i~vd~~~g~-lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~  167 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             CCeEEEEECCCCEEEEEEcCCCCEEEEEECC-CCCccEEEEeeCCCE-EEEEECCCCCcEEEEEecCCCCcEEEEECCCC
Confidence            66555 4456678999887654333332222 245678999985432 3334332  46888888765332222222334


Q ss_pred             ceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCce
Q psy6984         195 YLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK  273 (380)
Q Consensus       195 ~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (380)
                      ....++++|++.. +++-...+.|..+|+.................++..  +...     .......+.+..++..+++
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~l-----yva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNL-----YYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEE-----EEEETTTTEEEEEETTTTE
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEE-----EEEECCCCeEEEEeCCCCC
Confidence            6889999997665 455566789999998754332222222223344332  1110     1112234566677777666


Q ss_pred             eeeeeeccc-cceeEEEEeecCC
Q psy6984         274 METPFFSLF-RDVLSVAFSVDNR  295 (380)
Q Consensus       274 ~~~~~~~~~-~~v~~~~~s~~~~  295 (380)
                      ....+.... .....+++.|++.
T Consensus       241 ~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          241 EMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEECCSSCCCCCCEEEECSCC
T ss_pred             ceEEEccccccccceeeecCccC
Confidence            554443221 2355667776653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.86  E-value=1.4e-07  Score=82.29  Aligned_cols=232  Identities=9%  Similarity=-0.066  Sum_probs=130.5

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEee----------CCCeEEEeecCCCCCCcccccc---cccCCCcceE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCS----------RDNTLIIWKLTRDDTNYGVPQK---RLKGHSHFIS   68 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~----------~dg~v~vw~~~~~~~~~~~~~~---~~~~h~~~v~   68 (380)
                      ++++.+...++.--..+  .+.++|+ +++++.+.          .+++|.+||.........++..   ++. ......
T Consensus        52 D~~t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-~g~~P~  127 (368)
T 1mda_H           52 CAGCGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-VGPRVH  127 (368)
T ss_dssp             ETTTTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-BSCCTT
T ss_pred             ECCCCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-cCCCcc
Confidence            35667777777644445  6999998 45555554          4789999998765433222110   000 012345


Q ss_pred             EEEEccCCCEEEEEeC--CCcEEE--EECCCCceeeeecccC-------CCeEEEEEeC---------------------
Q psy6984          69 DIVLSSDGNYALSGSW--DKTLRL--WDLAAGKTTRRFEDHT-------KDVLSVAFSV---------------------  116 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~--d~~i~v--wd~~~~~~~~~~~~h~-------~~v~~~~~~~---------------------  116 (380)
                      .+.++|||++|+++..  +..|.+  +|..+   +..+..-.       +.-.-+++++                     
T Consensus       128 ~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~  204 (368)
T 1mda_H          128 IIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             eEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence            7899999999998875  356888  88865   22221000       0000011122                     


Q ss_pred             ----------------CCCEEEEEeCCCcEEEEeCCCcceEEE--eeCC-----Cc----CcEEEEEEccCCCCCEEEEE
Q psy6984         117 ----------------DNRQIVSSSRDKTIKLWNTLAHCKFTI--VEDG-----HS----DWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus       117 ----------------~~~~~~s~~~d~~v~iwd~~~~~~~~~--~~~~-----~~----~~v~~~~~~~~~~~~~l~s~  169 (380)
                                      ++..++..+. +.+.+.|.........  +...     ..    .....++++|++.. ++++.
T Consensus       205 ~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~-lyV~~  282 (368)
T 1mda_H          205 QCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG-IMILT  282 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE-EEEEE
T ss_pred             EeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE-EEEEe
Confidence                            2222222222 4444445432111000  0000     00    00112678887654 33333


Q ss_pred             e---C-----CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC-EEEEEc-CCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984         170 G---W-----DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGG-KDMNAMLWDLNDGKHLHTLVHNDIITA  239 (380)
Q Consensus       170 ~---~-----d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~i~~  239 (380)
                      .   .     ++.+.++|+.+.+....+.... ....++++|||+ .+++.. .++.|.++|+.+.+.+..+........
T Consensus       283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~  361 (368)
T 1mda_H          283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPES  361 (368)
T ss_dssp             EECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred             ccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCE
Confidence            3   2     2356699999988766554332 588899999998 456666 599999999999999888866555555


Q ss_pred             EEee
Q psy6984         240 LCFS  243 (380)
Q Consensus       240 ~~~~  243 (380)
                      +++.
T Consensus       362 i~~~  365 (368)
T 1mda_H          362 LSVQ  365 (368)
T ss_dssp             EECC
T ss_pred             EEee
Confidence            5543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.85  E-value=5.8e-07  Score=77.53  Aligned_cols=263  Identities=13%  Similarity=0.038  Sum_probs=145.7

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      +...+.++...++  ..+..++.+  +..+|... ...     ..............+.  +..+..++.++.|..+|..
T Consensus        58 ~~~~~~~~~~~~~--g~l~v~t~~--l~~~d~~g-~~~-----~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~  125 (330)
T 3hxj_A           58 GEIIECRPSIGKD--GTIYFGSDK--VYAINPDG-TEK-----WRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD  125 (330)
T ss_dssp             GGEEEECCEETTT--TEECCSSCE--EEEECCCG-GGG-----GGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT
T ss_pred             CCCcccceEEecC--CcEEEecCc--EEEECCCC-cEE-----EEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC
Confidence            3344566666544  345555544  77776421 111     1111111112223333  5578888889999999988


Q ss_pred             CCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                       ++...........+.++...+++. +..++.++.+..+|.. +....... .....+.++.+.+++.   +..++  +.
T Consensus       126 -g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~---l~v~t--~~  196 (330)
T 3hxj_A          126 -GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK-TNDAITSAASIGKDGT---IYFGS--DK  196 (330)
T ss_dssp             -SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCC---EEEES--SS
T ss_pred             -CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCE---EEEEe--CE
Confidence             777666655555566667777776 5567788899999976 44333322 2233455566654432   44444  78


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCc-eEEEEeecCcccceeee
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI-ITALCFSPNRSFQKIKL  253 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~  253 (380)
                      |..+| .+++...........+.++..+++|.+. .++.++.+..+|. +++.+........ +..+...+++.      
T Consensus       197 l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~------  267 (330)
T 3hxj_A          197 VYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT------  267 (330)
T ss_dssp             EEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC------
T ss_pred             EEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe------
Confidence            89999 6655555544444567788888887654 4566778888874 5665555443222 22233332222      


Q ss_pred             eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                       +.....++.+..++. +++....+......+.++...++++. ..++.+|.+++..
T Consensus       268 -l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~  321 (330)
T 3hxj_A          268 -IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALF  321 (330)
T ss_dssp             -EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEE
T ss_pred             -EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEe
Confidence             111222345666654 34433322222334556666667765 4477889888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.82  E-value=2e-06  Score=75.69  Aligned_cols=222  Identities=12%  Similarity=0.076  Sum_probs=137.0

Q ss_pred             CCCCCeEEEeeCCCeEEEeecCCCCCCcccccccc-----c-C-CCcceEEEEEccCCCEEEEEeCC------CcEEEEE
Q psy6984          26 PKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-----K-G-HSHFISDIVLSSDGNYALSGSWD------KTLRLWD   92 (380)
Q Consensus        26 ~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~-----~-~-h~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd   92 (380)
                      ++...+++++..++.|.+.|+..+.....+ .+..     . . -...-..+..+|+| .++++..+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~-~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKI-IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEE-EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCcee-eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            554445777888999999998644221111 1111     0 0 01123456778999 77766555      7899999


Q ss_pred             CCCCceeeeecccCCC---eEEEEEeCCCCEEEEEe-------------------CCCcEEEEeCCCcceEEEeeCC-Cc
Q psy6984          93 LAAGKTTRRFEDHTKD---VLSVAFSVDNRQIVSSS-------------------RDKTIKLWNTLAHCKFTIVEDG-HS  149 (380)
Q Consensus        93 ~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~s~~-------------------~d~~v~iwd~~~~~~~~~~~~~-~~  149 (380)
                      ..+++.+.++..-..+   -..+.|+|+++.+++..                   .+.+|.+||+.+......+..+ ..
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999999888633222   23578899999888885                   3689999998776554444433 11


Q ss_pred             CcEEEEEE--ccCCCCCEEEEEe-----CCCeEEEEeCCCceeeEe----eeCC----------------ccceEEEEEc
Q psy6984         150 DWVSCVRF--SPNHQNPIIVSAG-----WDRMVKVWNLTNCKLKIN----HSGH----------------TGYLNTVTVS  202 (380)
Q Consensus       150 ~~v~~~~~--~~~~~~~~l~s~~-----~d~~v~iwd~~~~~~~~~----~~~~----------------~~~i~~~~~~  202 (380)
                      .....++|  +|+++. .++++.     .+++|.+|....+.....    ....                ...+..+.++
T Consensus       251 ~~P~~i~f~~~Pdg~~-aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          251 RMALELRPLHDPTKLM-GFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEECSSTTCCE-EEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CccceeEeeECCCCCE-EEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            23445666  776653 344455     677887765543321111    1110                1346788999


Q ss_pred             CCCCEEEEEcC-CCcEEEEECCCC---cEEEEEEecC---------------ceEEEEeecCcccce
Q psy6984         203 PDGSLCASGGK-DMNAMLWDLNDG---KHLHTLVHND---------------IITALCFSPNRSFQK  250 (380)
Q Consensus       203 ~~~~~l~~~~~-d~~i~i~d~~~~---~~~~~~~~~~---------------~i~~~~~~~~~~~~~  250 (380)
                      |||++|.++.. .+.|.+||+...   +.+..+....               ....++++|++++..
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly  396 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY  396 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence            99998766554 689999998533   4444444331               256777888776543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.80  E-value=5.6e-06  Score=75.51  Aligned_cols=190  Identities=11%  Similarity=0.054  Sum_probs=123.9

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc--cCCCCCEEEEEe------------------CCCe
Q psy6984         116 VDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS--PNHQNPIIVSAG------------------WDRM  174 (380)
Q Consensus       116 ~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~------------------~d~~  174 (380)
                      +||+++.... .+..|.+-|+...+...++..........+++.  |++.  +++.++                  .++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~--~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN--YVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS--EEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCc--EEEEecccccccCCCCcccccccccCce
Confidence            3788776655 456799999887665554443444457788873  6654  455442                  3467


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC--------------------------------------c
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM--------------------------------------N  216 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--------------------------------------~  216 (380)
                      +.+.|..+.+......--. ....++++|+|+++++.+.+.                                      .
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999887766554211 346678999999988887553                                      4


Q ss_pred             EEEEECCC--CcE-EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee-----------eeeeeccc
Q psy6984         217 AMLWDLND--GKH-LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM-----------ETPFFSLF  282 (380)
Q Consensus       217 i~i~d~~~--~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  282 (380)
                      +.+.|..+  ++. +..+........+.++|++++....     ......+.++++...+.           ...-....
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~-----~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-----GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE-----CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe-----CCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence            67777776  444 4555556667788899998875432     23456677888774421           11111222


Q ss_pred             cceeEEEEeecCCEEEEeeCCCcEEEEeccc
Q psy6984         283 RDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  313 (380)
Q Consensus       283 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  313 (380)
                      ...+-++|+|+|...++.-.|++|..|++.+
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            3467889999994445556699999999755

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.79  E-value=2.5e-05  Score=64.42  Aligned_cols=158  Identities=12%  Similarity=0.060  Sum_probs=105.6

Q ss_pred             ceEEEEEccCCCEEEEEeC--CCcEEEEECCCCceeeeecccCC-CeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceE
Q psy6984          66 FISDIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRRFEDHTK-DVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~  141 (380)
                      +...+.|++|+.+.++.+.  ++.|+++|+.+++.+..+.--.. -...+++.  +..+. +.-.++.+.++|..+....
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            4578999998755555443  57999999999999887642111 22345554  44554 5557889999998776555


Q ss_pred             EEeeCC-CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC-----ccceEEEEEcCCCCEEEEEcCCC
Q psy6984         142 TIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH-----TGYLNTVTVSPDGSLCASGGKDM  215 (380)
Q Consensus       142 ~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~  215 (380)
                      ..+..+ ...    ..+++++.. ++++. .++.|.++|..+.+......-.     ...++.+.+. +|+.++....++
T Consensus       100 ~~i~~g~~~g----~glt~Dg~~-l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~  172 (266)
T 2iwa_A          100 KNFTHQMKDG----WGLATDGKI-LYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD  172 (266)
T ss_dssp             EEEECCSSSC----CEEEECSSS-EEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             EEEECCCCCe----EEEEECCCE-EEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence            555433 222    234555543 44444 5789999999987765544311     1246788888 777777777789


Q ss_pred             cEEEEECCCCcEEEEEE
Q psy6984         216 NAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       216 ~i~i~d~~~~~~~~~~~  232 (380)
                      .|.+.|..+++.+..+.
T Consensus       173 ~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          173 CIARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEE
Confidence            99999999998776654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.75  E-value=0.00021  Score=69.47  Aligned_cols=323  Identities=10%  Similarity=0.090  Sum_probs=180.8

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-cccccc-cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQK-RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      ...|.+|...++ + .+..++.++-+..|+....... +..... ...-....|.++...++|.+.+ |..+ -|.+||.
T Consensus       214 ~~~i~~i~~d~~-g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~  289 (795)
T 4a2l_A          214 TKQIQAILQQSP-T-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHE  289 (795)
T ss_dssp             CCCEEEEEEEET-T-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEET
T ss_pred             CCeeEEEEEcCC-C-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcC
Confidence            356777776554 3 3444554444777875432111 000000 0011235699999988887555 4444 5899998


Q ss_pred             CCCceeeeecc-------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC-----CCcCcEEEEEEccCC
Q psy6984          94 AAGKTTRRFED-------HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED-----GHSDWVSCVRFSPNH  161 (380)
Q Consensus        94 ~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~  161 (380)
                      .+++.......       ....|.++...++|.. ..|+.++-|..|+............     -....|.++...+++
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g  368 (795)
T 4a2l_A          290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK  368 (795)
T ss_dssp             TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred             CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC
Confidence            77654432211       2356999999988875 4566666788887543322111110     123458888877654


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeC--------CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSG--------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-  232 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  232 (380)
                      .   |..|+.++-|..||..+.+.......        ....|.++..+++|+.|..|+.++-|..+|..+++...... 
T Consensus       369 ~---lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          369 N---LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             C---EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred             C---EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence            3   66677777899999876554332111        13568899999999856677777789999988776433221 


Q ss_pred             ----ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec------cccceeEEEEeecCCEEEEeeC
Q psy6984         233 ----HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS------LFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       233 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                          ....|.++...+++..-       .... ..+..++..+++.......      ....|.++...++|+..+... 
T Consensus       446 ~~~l~~~~v~~i~~d~~g~lw-------igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-  516 (795)
T 4a2l_A          446 NSQLVNENVYAILPDGEGNLW-------LGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-  516 (795)
T ss_dssp             TSCCSCSCEEEEEECSSSCEE-------EEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred             CCCcCCCeeEEEEECCCCCEE-------EEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-
Confidence                12346666655544321       1111 4566777665544322111      124578888888888766544 


Q ss_pred             CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       303 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      + -+..|+...+.. .            .....  .........+.++...++|++.++. ..| +..|+.
T Consensus       517 ~-Gl~~~~~~~~~~-~------------~~~~~--~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l~~~d~  569 (795)
T 4a2l_A          517 E-GLSVFKQEGLDI-Q------------KASIL--PVSNVTKLFTNCIYEASNGIIWVGT-REG-FYCFNE  569 (795)
T ss_dssp             S-CEEEEEEETTEE-E------------ECCCS--CSCGGGGSCEEEEEECTTSCEEEEE-SSC-EEEEET
T ss_pred             C-ceEEEeCCCCeE-E------------EecCC--CCCCCCCCeeEEEEECCCCCEEEEe-CCC-ceeECC
Confidence            4 466676433221 1            10000  0000112356778888888866543 344 556653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.72  E-value=3.8e-06  Score=79.71  Aligned_cols=152  Identities=12%  Similarity=0.075  Sum_probs=98.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeecccCCC----------e-EEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD----------V-LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  144 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~  144 (380)
                      +..++.++.++.|+.+|..+|+.+.++......          + ..++.  ++..++.++.|+.+..+|..++......
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            567888888999999999999988776532210          0 11222  3567888889999999998777665444


Q ss_pred             eCCCc---CcEE-EEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCC---c------------------
Q psy6984         145 EDGHS---DWVS-CVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGH---T------------------  193 (380)
Q Consensus       145 ~~~~~---~~v~-~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~---~------------------  193 (380)
                      .....   ..+. ...+. +   ..++.+..      ++.|..+|.++++....+...   .                  
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~---~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-K---GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-T---TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             ccCCCCCcceecCCCEEE-C---CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            33211   0011 01111 1   23444432      589999999998876655321   0                  


Q ss_pred             ----------cceEEEEEcCCCCEEEEEcCCC-------------------cEEEEECCCCcEEEEEEe
Q psy6984         194 ----------GYLNTVTVSPDGSLCASGGKDM-------------------NAMLWDLNDGKHLHTLVH  233 (380)
Q Consensus       194 ----------~~i~~~~~~~~~~~l~~~~~d~-------------------~i~i~d~~~~~~~~~~~~  233 (380)
                                .....++++|++..+..+..++                   .|..+|..+++.+..+..
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~  288 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV  288 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence                      0112468888888888887765                   399999999998877753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.68  E-value=5.2e-05  Score=62.50  Aligned_cols=222  Identities=8%  Similarity=0.029  Sum_probs=125.5

Q ss_pred             eeeeecccCCC--eEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      .+.++ .|...  ...+.|++++.+.++.+.  ++.|.+.|..++.....+..+.......+.+..  . .++++.-.++
T Consensus        11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~-~lyv~t~~~~   86 (266)
T 2iwa_A           11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--E-KLYQVVWLKN   86 (266)
T ss_dssp             EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--T-EEEEEETTCS
T ss_pred             EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--C-EEEEEEecCC
Confidence            34444 34432  578999998755555443  679999998887666554432222334455542  2 2455556688


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeee
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKL  253 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  253 (380)
                      .+.++|..+.+....++.....  ...+++||+.++++..++.|.++|..+.+.+..+.....         +       
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---------~-------  148 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---------G-------  148 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---------T-------
T ss_pred             EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---------C-------
Confidence            9999999988776665422111  233566777776777789999999988776655432110         0       


Q ss_pred             eeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCc
Q psy6984         254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP  333 (380)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  333 (380)
                                         +.       ......+.|. +++.++....++.|.+-|..++.....++....      .+
T Consensus       149 -------------------~p-------~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~------~~  195 (266)
T 2iwa_A          149 -------------------HR-------VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNL------RK  195 (266)
T ss_dssp             -------------------EE-------CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHH------HH
T ss_pred             -------------------cc-------cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCc------cc
Confidence                               00       0012234555 565555544566776666554444333332110      00


Q ss_pred             ccccccCCCCCCceEEEEEecCCCEEE-EEeeCCeEEEEEeee
Q psy6984         334 DVVSQSTKADPPMCLSLAWSTDGQTLF-AGYSDNTIRVWQVSV  375 (380)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~s~dg~~l~-~g~~dg~v~iw~~~~  375 (380)
                      +.. ............++|+|+++.++ ++...+.|.+-++..
T Consensus       196 ~~~-~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          196 KLI-DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             HHH-HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ccc-cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            000 00011112346899999987655 565788787776643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.68  E-value=0.00035  Score=67.90  Aligned_cols=275  Identities=10%  Similarity=0.010  Sum_probs=161.0

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCC-cccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTN-YGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      ..|.+|...++ + .|..|+.++-|..|+....... +........-....|.++...++|+ |-.|..++-|..||..+
T Consensus       310 ~~i~~i~~D~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~  386 (795)
T 4a2l_A          310 RSVRSIFMDSQ-G-GMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT  386 (795)
T ss_dssp             SCEEEEEECTT-S-CEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred             CcEEEEEEeCC-c-CEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence            56888888765 3 4555776677888875432211 0000000011235689999888887 44577777899999877


Q ss_pred             Cceeeeecc--------cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC---CCcCcEEEEEEccCCCCC
Q psy6984          96 GKTTRRFED--------HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED---GHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        96 ~~~~~~~~~--------h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~  164 (380)
                      ++.......        ....|.++...+++..+..|+.++-+..+|..++........   .....|.++...+++.  
T Consensus       387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--  464 (795)
T 4a2l_A          387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN--  464 (795)
T ss_dssp             CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC--
T ss_pred             CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC--
Confidence            654432211        135688999888888566777777799998765443222110   1235688888766442  


Q ss_pred             EEEEEeCCCeEEEEeCCCceeeEeeeC------CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE------
Q psy6984         165 IIVSAGWDRMVKVWNLTNCKLKINHSG------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV------  232 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------  232 (380)
                       |..|+. +-+..||..+.+.......      ....|.++..+++|++.+...  +-+..||..+++.  .+.      
T Consensus       465 -lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~  538 (795)
T 4a2l_A          465 -LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVS  538 (795)
T ss_dssp             -EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSC
T ss_pred             -EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCC
Confidence             444444 4588899877654332211      235688999999998766544  4688898876654  221      


Q ss_pred             --ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeee--ecc-ccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         233 --HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF--FSL-FRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       233 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                        ....+.++...+++..-.       ... ..+..++...++...-.  .+. ...|.++...++|+..+++ .. -|.
T Consensus       539 ~l~~~~i~~i~~d~~g~lWi-------gT~-~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~-Gl~  608 (795)
T 4a2l_A          539 NVTKLFTNCIYEASNGIIWV-------GTR-EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NR-GIS  608 (795)
T ss_dssp             GGGGSCEEEEEECTTSCEEE-------EES-SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TT-EEE
T ss_pred             CCCCCeeEEEEECCCCCEEE-------EeC-CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CC-ceE
Confidence              123456666555543211       111 25666666555433211  111 2347778888888876655 33 455


Q ss_pred             EEecc
Q psy6984         308 LWNTL  312 (380)
Q Consensus       308 iw~~~  312 (380)
                      .|+..
T Consensus       609 ~~~~~  613 (795)
T 4a2l_A          609 CFNPE  613 (795)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            66643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.67  E-value=3.6e-05  Score=73.09  Aligned_cols=283  Identities=9%  Similarity=0.067  Sum_probs=157.2

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCccccccc----ccCCC-cce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKR----LKGHS-HFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF  102 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~----~~~h~-~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  102 (380)
                      +..++.++.++.|..+|....+.........    ..... ..+ ..+.+  ++..++.++.|+.|..+|..+|+.+.++
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            3467777778888888765443322111100    00000 001 11222  3568888999999999999999988776


Q ss_pred             cccC----CCeEE-EEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEEeeCC--CcC-------------------
Q psy6984         103 EDHT----KDVLS-VAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTIVEDG--HSD-------------------  150 (380)
Q Consensus       103 ~~h~----~~v~~-~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~~~~~--~~~-------------------  150 (380)
                      ....    ..+.+ ... .++ .++.+..      ++.|..+|..++.........  ...                   
T Consensus       144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            5421    11111 011 134 4444432      588999998777665444311  000                   


Q ss_pred             ---------cEEEEEEccCCCCCEEEEEeCCC-------------------eEEEEeCCCceeeEeeeC--Cc-------
Q psy6984         151 ---------WVSCVRFSPNHQNPIIVSAGWDR-------------------MVKVWNLTNCKLKINHSG--HT-------  193 (380)
Q Consensus       151 ---------~v~~~~~~~~~~~~~l~s~~~d~-------------------~v~iwd~~~~~~~~~~~~--~~-------  193 (380)
                               ....+++.|..  .+++.+..++                   .|..+|.++++....+..  |.       
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~--~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~  299 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPEL--DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT  299 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTT--TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             eeeeCCCCccccceEEcCCC--CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence                     00135666643  3566665555                   499999999988766553  21       


Q ss_pred             cceEEEEEcCCCC---EEEEEcCCCcEEEEECCCCcEEEEEEecC-------------ce--------------------
Q psy6984         194 GYLNTVTVSPDGS---LCASGGKDMNAMLWDLNDGKHLHTLVHND-------------II--------------------  237 (380)
Q Consensus       194 ~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~i--------------------  237 (380)
                      .++....+..+|+   .++.++.+|.++++|..+|+.+.......             ++                    
T Consensus       300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G  379 (668)
T 1kv9_A          300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG  379 (668)
T ss_dssp             SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred             CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence            2222223334665   68899999999999999999875443211             00                    


Q ss_pred             ----EEEEeecCcccceeee--------------------eee----------eeccccceEEEEcCCceeeeeeecccc
Q psy6984         238 ----TALCFSPNRSFQKIKL--------------------DIS----------RTLQKSNLILYPINHGKMETPFFSLFR  283 (380)
Q Consensus       238 ----~~~~~~~~~~~~~~~~--------------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (380)
                          ..++++|+.....+..                    ...          .....+.+..++..+++..=.... ..
T Consensus       380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~  458 (668)
T 1kv9_A          380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PT  458 (668)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SS
T ss_pred             ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CC
Confidence                0123344321110000                    000          001125577788888876433221 22


Q ss_pred             ceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       284 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                      ......+...+.+++.++.||.++.||..++..+.
T Consensus       459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence            33344556678889999999999999876655443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.62  E-value=0.00017  Score=61.82  Aligned_cols=238  Identities=8%  Similarity=-0.009  Sum_probs=132.2

Q ss_pred             eEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-------------------ccCCCeEEEEEeC-CCCEEEEEeC
Q psy6984          67 ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-------------------DHTKDVLSVAFSV-DNRQIVSSSR  126 (380)
Q Consensus        67 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------~h~~~v~~~~~~~-~~~~~~s~~~  126 (380)
                      ..++++.++++++.++..++.|..||..+++......                   .....+..+++.+ +++ |+.+..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence            4578889999878888889999999987654432110                   0113578899998 554 555544


Q ss_pred             CCcEEEEeCCCcceEEEee--CC-CcCcEEEEEEcc-CCCCCEEEEEeC-----------------CCeEEEEeCCCcee
Q psy6984         127 DKTIKLWNTLAHCKFTIVE--DG-HSDWVSCVRFSP-NHQNPIIVSAGW-----------------DRMVKVWNLTNCKL  185 (380)
Q Consensus       127 d~~v~iwd~~~~~~~~~~~--~~-~~~~v~~~~~~~-~~~~~~l~s~~~-----------------d~~v~iwd~~~~~~  185 (380)
                      .+.+..+|..++.......  .+ .......+++.+ ++.  ++++...                 ++.|..||..+.+.
T Consensus       100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A          100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            4558888865432211111  11 113467788888 653  4444322                 36788888876554


Q ss_pred             eEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEECCCCc--EEEEE-EecCceEEEEeecCcccceeeeeeeee---
Q psy6984         186 KINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLNDGK--HLHTL-VHNDIITALCFSPNRSFQKIKLDISRT---  258 (380)
Q Consensus       186 ~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~---  258 (380)
                      ..... .....+.++++|+|+.|. +-...+.|..|++....  ....+ .... ...+++.+++.+..........   
T Consensus       178 ~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~  255 (322)
T 2fp8_A          178 TLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMH  255 (322)
T ss_dssp             EEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred             EEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccccc
Confidence            32222 123467799999998554 44667899999987421  11122 1223 6677777776432221110000   


Q ss_pred             -ccccceEEEEcCCceeeeeeecc----ccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         259 -LQKSNLILYPINHGKMETPFFSL----FRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       259 -~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                       .....+..++.. ++....+...    ...+..+++ .+++++++....+.|..++.
T Consensus       256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          256 GRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             SCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             CCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence             001234444432 3333222211    233555655 46666666556777777764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.60  E-value=7.1e-05  Score=64.24  Aligned_cols=240  Identities=12%  Similarity=0.074  Sum_probs=133.6

Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCC------------------CcCcEEEEEEcc-CCCCCEEEE
Q psy6984         108 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDG------------------HSDWVSCVRFSP-NHQNPIIVS  168 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~------------------~~~~v~~~~~~~-~~~~~~l~s  168 (380)
                      ...+++++++++.+.++..++.|..|+.............                  .......+++.+ ++   .|+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g---~l~v   96 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN---QLYI   96 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT---EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC---cEEE
Confidence            3456788999887888888899999986554332222110                  012467888886 43   3555


Q ss_pred             EeCCCeEEEEeCCCceeeEee---eC-CccceEEEEEcC-CCCEEEEEcC-----------------CCcEEEEECCCCc
Q psy6984         169 AGWDRMVKVWNLTNCKLKINH---SG-HTGYLNTVTVSP-DGSLCASGGK-----------------DMNAMLWDLNDGK  226 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~---~~-~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~i~d~~~~~  226 (380)
                      +...+.|..+|..+.......   .+ ....++.+++++ +|++.++-..                 ++.|..+|..+++
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            555566888887755432211   11 123478899999 9987776432                 3678899987765


Q ss_pred             EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee--eeeeeccccceeEEEEeecCCEEEEeeC--
Q psy6984         227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM--ETPFFSLFRDVLSVAFSVDNRQIVSSSR--  302 (380)
Q Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~--  302 (380)
                      .......-.....++++|++....+.     ......+..++......  ...+..... ...+++.++|++.++...  
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~-----d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVA-----EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEE-----EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEET
T ss_pred             EEEeccCCccCcceEECCCCCEEEEE-----eCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcc
Confidence            43332222445678888886532211     11235666777653211  011111122 567888888887666543  


Q ss_pred             --------CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         303 --------DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       303 --------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                              .+.|..++.. +..+..+....                ......+..+++ .+|+++++...++.|.++++.
T Consensus       251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----------------g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPP----------------PFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT-SCEEEEEECCT----------------TTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             cccccCCCccEEEEECCC-CCEEEEEECCC----------------CCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                    3455555532 21111111100                000112334555 467766666678889888864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.59  E-value=0.00014  Score=61.92  Aligned_cols=226  Identities=8%  Similarity=0.020  Sum_probs=132.0

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      +..++...+... .....+++.++ +.++++-..++.|..|+.....  .  .   ...-......+++.++|+++++..
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~~--~--~---~~~~~~~p~gia~~~dG~l~vad~   90 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQ--Q--I---HATVEGKVSGLAFTSNGDLVATGW   90 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTCCE--E--E---EEECSSEEEEEEECTTSCEEEEEE
T ss_pred             CCceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECCCCce--E--E---EEeCCCCceeEEEcCCCcEEEEec
Confidence            445677777543 56778999986 5666666678898888764321  0  0   111123578899999999666554


Q ss_pred             CCC--cEEEEECCCCceeeeecc-cCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-eEEEee--------CCCcCc
Q psy6984          84 WDK--TLRLWDLAAGKTTRRFED-HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-KFTIVE--------DGHSDW  151 (380)
Q Consensus        84 ~d~--~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~-~~~~~~--------~~~~~~  151 (380)
                      ...  .|..+|..+++....... .......++..+++..+++...++.|..+|..... ......        ......
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            432  477778777765433221 11223445555555545555567888888865431 111100        011123


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCC-cee--eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN-CKL--KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      .+.+  ++++. .++++-...+.|..+++.. ++.  ...+. .......++++++|+++++....+.|.++|.. ++..
T Consensus       171 pngi--s~dg~-~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~  245 (306)
T 2p4o_A          171 ANGL--KRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT  245 (306)
T ss_dssp             EEEE--EEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred             CCCc--CcCCC-EEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence            4445  56543 3556666778999999864 221  01111 11345678999999988877778899999975 5543


Q ss_pred             EE--EEec-CceEEEEee
Q psy6984         229 HT--LVHN-DIITALCFS  243 (380)
Q Consensus       229 ~~--~~~~-~~i~~~~~~  243 (380)
                      ..  +... ....+++|.
T Consensus       246 ~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          246 IIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             EEECGGGTCTTEEEEEEC
T ss_pred             EEeecccccCCceEEEEe
Confidence            22  2222 446777776

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=5.8e-05  Score=61.56  Aligned_cols=174  Identities=17%  Similarity=0.180  Sum_probs=115.7

Q ss_pred             cceEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDK--TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~  141 (380)
                      .+...+.|+ ++.+..+.+.+|  .|+++|+.+++.+..+.-. .........+++..+.. .-.++.+.++|..+....
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            345678888 677777777766  8999999999998887543 33433333344555554 446889999998776665


Q ss_pred             EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC----Cc-cceEEEEEcCCCCEEEEEcCCCc
Q psy6984         142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG----HT-GYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----~~-~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      ..+..+...    ..+++++. .++++- .++.|.++|..+.+......-    .. ..++.+.+. +|+.++..-.+..
T Consensus       121 ~ti~~~~eG----~glt~dg~-~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~  193 (262)
T 3nol_A          121 RSFNYDGEG----WGLTHNDQ-YLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK  193 (262)
T ss_dssp             EEEECSSCC----CCEEECSS-CEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCCc----eEEecCCC-EEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence            554433222    22234443 244443 467899999998776554332    11 345667776 7877777778899


Q ss_pred             EEEEECCCCcEEEEEEec-------------CceEEEEeecCcc
Q psy6984         217 AMLWDLNDGKHLHTLVHN-------------DIITALCFSPNRS  247 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~-------------~~i~~~~~~~~~~  247 (380)
                      |.+.|..+++.+..+...             +..+.++++|+..
T Consensus       194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~  237 (262)
T 3nol_A          194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH  237 (262)
T ss_dssp             EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred             EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence            999999999998887542             2346777777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.58  E-value=0.0002  Score=60.90  Aligned_cols=226  Identities=10%  Similarity=0.052  Sum_probs=125.8

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFT  142 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~  142 (380)
                      .....++++++++++++-..++.|..||.... ....+. ....+..++++++++++++.....  .+..+|...+....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            34678999999997777768899999998653 333322 234688999999999766654432  36556654443332


Q ss_pred             EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-e---------eCCccceEEEEEcCCCCEE-EEE
Q psy6984         143 IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-H---------SGHTGYLNTVTVSPDGSLC-ASG  211 (380)
Q Consensus       143 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~---------~~~~~~i~~~~~~~~~~~l-~~~  211 (380)
                      ............++..+++  ..+++-..++.|..+|....+.... .         .+.....+.+  +|+++.| ++-
T Consensus       110 ~~~~~~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d  185 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN  185 (306)
T ss_dssp             EEECTTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred             EEeCCCccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence            2222222223444444322  2344444578899999865421111 0         0111235555  7887654 555


Q ss_pred             cCCCcEEEEECCC-CcE--EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee--eeecccccee
Q psy6984         212 GKDMNAMLWDLND-GKH--LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET--PFFSLFRDVL  286 (380)
Q Consensus       212 ~~d~~i~i~d~~~-~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~  286 (380)
                      ...+.|..+++.. ++.  ...+........+++.+++.+...      ....+.+.+++.. ++...  ..........
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va------~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~  258 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA------THIYNSVVRIAPD-RSTTIIAQAEQGVIGST  258 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE------CBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE------eCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence            6678999999864 321  111211233455666666643111      1124556666654 43321  1111224578


Q ss_pred             EEEEe---ecCCEEEEeeCC
Q psy6984         287 SVAFS---VDNRQIVSSSRD  303 (380)
Q Consensus       287 ~~~~s---~~~~~l~s~~~d  303 (380)
                      +++|.   |+++.|+.++..
T Consensus       259 ~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          259 AVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEEECCSTTTTTEEEEEECT
T ss_pred             EEEEecccCCCCEEEEECCC
Confidence            89998   787776665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.58  E-value=0.00014  Score=67.57  Aligned_cols=155  Identities=9%  Similarity=0.010  Sum_probs=93.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccC--C--CeEE-EEEeCCCCEEEEEeC------CCcEEEEeCCCcceEEE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHT--K--DVLS-VAFSVDNRQIVSSSR------DKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~--~--~v~~-~~~~~~~~~~~s~~~------d~~v~iwd~~~~~~~~~  143 (380)
                      ++..++.++.|+.|..+|..+++.+.+.....  .  .+.+ ... .++ .++.++.      ++.|..+|..++.....
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            35688889999999999999999887654211  0  1111 111 134 4555554      78999999877666544


Q ss_pred             eeCCCcC------------------------------------cE-EEEEEccCCCCCEEEEEeCC--------------
Q psy6984         144 VEDGHSD------------------------------------WV-SCVRFSPNHQNPIIVSAGWD--------------  172 (380)
Q Consensus       144 ~~~~~~~------------------------------------~v-~~~~~~~~~~~~~l~s~~~d--------------  172 (380)
                      .......                                    .+ ..+++.+..  ..++.+..+              
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~--g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL--NLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC--CeEEEECCCCccccCCccCCCce
Confidence            3321100                                    00 113444432  234444321              


Q ss_pred             --CeEEEEeCCCceeeEeeeC--Cc-------cceEEEEEcCCCC---EEEEEcCCCcEEEEECCCCcEEEEEEe
Q psy6984         173 --RMVKVWNLTNCKLKINHSG--HT-------GYLNTVTVSPDGS---LCASGGKDMNAMLWDLNDGKHLHTLVH  233 (380)
Q Consensus       173 --~~v~iwd~~~~~~~~~~~~--~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~  233 (380)
                        +.|..+|.++++....++.  |.       ....-+...++|+   .++.++.+|.++++|..+++.+.....
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence              3689999999887765542  11       1111122234674   677899999999999999998876643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.56  E-value=0.00016  Score=67.34  Aligned_cols=198  Identities=10%  Similarity=0.043  Sum_probs=111.0

Q ss_pred             CeEEEeeC-CCeEEEeec-CCCCCCcccccccc-------cCCCcceEEEEEccCCCE----EEEEeCCCcEEEEECCCC
Q psy6984          30 DTILSCSR-DNTLIIWKL-TRDDTNYGVPQKRL-------KGHSHFISDIVLSSDGNY----ALSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        30 ~~l~t~~~-dg~v~vw~~-~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~----l~s~~~d~~i~vwd~~~~   96 (380)
                      ..++.++. ++.|.-+|. ...+.........-       .++ .....++++|.+..    ++.++.|+.|..+|..+|
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~-~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCD-LVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSC-SCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccccc-ccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            45666666 777777776 44332221111000       000 00122445444444    888999999999999999


Q ss_pred             ceeeeecccC----CCeEE-EEEeCCCCEEEEEe------CCCcEEEEeCCCcceEEEeeCCCcC---------------
Q psy6984          97 KTTRRFEDHT----KDVLS-VAFSVDNRQIVSSS------RDKTIKLWNTLAHCKFTIVEDGHSD---------------  150 (380)
Q Consensus        97 ~~~~~~~~h~----~~v~~-~~~~~~~~~~~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~---------------  150 (380)
                      +.+.+.....    ..+.+ ... .++ .++.++      .++.|..+|..++............               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            9887654221    01111 111 134 455544      3789999998877665443322110               


Q ss_pred             ---------------------cEE-EEEEccCCCCCEEEEEeCC----------------CeEEEEeCCCceeeEeeeCC
Q psy6984         151 ---------------------WVS-CVRFSPNHQNPIIVSAGWD----------------RMVKVWNLTNCKLKINHSGH  192 (380)
Q Consensus       151 ---------------------~v~-~~~~~~~~~~~~l~s~~~d----------------~~v~iwd~~~~~~~~~~~~~  192 (380)
                                           .++ ...+.+..  .+++.+..+                ..|..+|.++++....++..
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~--g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~  297 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT--NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT  297 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCC--CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence                                 000 12333332  345555443                47999999998887655432


Q ss_pred             cc---------ceEEEEEc-CCC---CEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         193 TG---------YLNTVTVS-PDG---SLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       193 ~~---------~i~~~~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      ..         ...-+... .+|   ..++.++.+|.++++|..+++.+....
T Consensus       298 ~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          298 PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            11         11112222 567   467789999999999999999887654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.54  E-value=3.6e-06  Score=76.77  Aligned_cols=236  Identities=11%  Similarity=0.057  Sum_probs=142.4

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEE-c-cCCCEEEEEeC------------------CCcEEE
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVL-S-SDGNYALSGSW------------------DKTLRL   90 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~l~s~~~------------------d~~i~v   90 (380)
                      .+++...++.|.+-|+....... +  ..+. .......+++ + |+++++++++.                  ++.+.+
T Consensus       104 lfVnd~~~~rVavIdl~t~~~~~-i--i~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          104 LFMNDKANTRVARVRCDVMKCDA-I--LEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEE-E--EECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCceEee-E--EeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            34444456678888876432111 0  0111 1224667887 5 99999998852                  357899


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC--------------------------------------cEEE
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK--------------------------------------TIKL  132 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~--------------------------------------~v~i  132 (380)
                      .|..+.+...++.--. ....++++|+|+++++++.+.                                      .|.+
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            9999888877765322 345678999999999888543                                      2444


Q ss_pred             EeCCC--cce-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce------------eeEeeeCCccceE
Q psy6984         133 WNTLA--HCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK------------LKINHSGHTGYLN  197 (380)
Q Consensus       133 wd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------------~~~~~~~~~~~i~  197 (380)
                      .|..+  ... ...+..+  ....++.++|+++. +++++..+.+|.++|+.+.+            ...... -.....
T Consensus       259 ID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~-v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~  334 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKH-LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL  334 (595)
T ss_dssp             EECSGGGCCSSEEEEEEE--SSCCCEEECTTSSE-EEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred             EeCcccCCceeEEEEecC--CCceEEEEcCCCCE-EEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence            44443  111 1111111  12357899998764 56677778999999998652            111221 224578


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEECCC----------CcEEEEEEecCceE------EEEeecCcccceeeeeeee--e-
Q psy6984         198 TVTVSPDGSLCASGGKDMNAMLWDLND----------GKHLHTLVHNDIIT------ALCFSPNRSFQKIKLDISR--T-  258 (380)
Q Consensus       198 ~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~~~~--~-  258 (380)
                      .++|+|+|...++.-.|++|.+||+..          .+.+..+.....+-      ...++|++++.........  - 
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~  414 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFL  414 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSC
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccc
Confidence            899999996666788899999999976          45666665433321      2234677776544333221  0 


Q ss_pred             ----ccccceEEEEcCCceee
Q psy6984         259 ----LQKSNLILYPINHGKME  275 (380)
Q Consensus       259 ----~~~~~~~~~~~~~~~~~  275 (380)
                          +.-.+-.++++..++|.
T Consensus       415 ~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          415 NVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             CCCSSCCEEEEEEECSSSSCE
T ss_pred             cCCCCCCCcceEEEcCCCcEE
Confidence                01112377888766654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.53  E-value=5.2e-05  Score=61.89  Aligned_cols=173  Identities=11%  Similarity=0.134  Sum_probs=115.0

Q ss_pred             cceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      .+...+.|+ ++.+..+.+.+|.|+++|+.+++.++.+  -..........+++. ..+..-.++.+.+||..+......
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            345678887 4667778888899999999999998877  333443322333444 444555789999999877666555


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--C---ccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--H---TGYLNTVTVSPDGSLCASGGKDMNAM  218 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~~d~~i~  218 (380)
                      +......  ..++  +++.  .|+.+..++.|.++|..+.+......-  +   ...++.+.+. +|+.++..-.+..|.
T Consensus       132 i~~~~eG--wGLt--~Dg~--~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          132 TRYSGEG--WGLC--YWNG--KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EECSSCC--CCEE--EETT--EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EeCCCce--eEEe--cCCC--EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence            4433222  2333  3333  354444588999999998776554432  1   1245677776 777777776788999


Q ss_pred             EEECCCCcEEEEEEec--------------CceEEEEeecCcc
Q psy6984         219 LWDLNDGKHLHTLVHN--------------DIITALCFSPNRS  247 (380)
Q Consensus       219 i~d~~~~~~~~~~~~~--------------~~i~~~~~~~~~~  247 (380)
                      +.|..+++.+..+...              +..+.++++|+..
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~  247 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG  247 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence            9999999998887532              2446777777543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.51  E-value=0.00017  Score=58.85  Aligned_cols=126  Identities=10%  Similarity=0.033  Sum_probs=81.4

Q ss_pred             eeeeecccCCC--eEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      .++++ .|...  ...+.|+ ++.+..+++.+|  .|+.+|+.++.............-..+.+.  +. .++...-.++
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~-~ly~ltw~~~  107 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KD-KIVGLTWKNG  107 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TT-EEEEEESSSS
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CC-EEEEEEeeCC
Confidence            45555 35443  3788898 676677777766  899999888766655543322222334443  22 2444455588


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      .+.++|..+.+....++-.. .-+.  +.++++.|+.+..++.|.++|..+.+.+..+
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~-eG~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDG-EGWG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSS-CCCC--EEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             EEEEEECccCcEEEEEECCC-CceE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence            99999999988776665322 2223  3456776666666889999999988776554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.51  E-value=1.6e-05  Score=75.49  Aligned_cols=158  Identities=9%  Similarity=0.084  Sum_probs=86.8

Q ss_pred             EEEEcc-CCCEEEEEeCCC-----------cEEEEECCCCceee--eecc-cCCCeEEEEEeCCCCEEEEEe-CCCcEEE
Q psy6984          69 DIVLSS-DGNYALSGSWDK-----------TLRLWDLAAGKTTR--RFED-HTKDVLSVAFSVDNRQIVSSS-RDKTIKL  132 (380)
Q Consensus        69 ~~~~~~-~~~~l~s~~~d~-----------~i~vwd~~~~~~~~--~~~~-h~~~v~~~~~~~~~~~~~s~~-~d~~v~i  132 (380)
                      .+++.+ +++.++.|+.+.           .+.+||..+++-..  .+.. +.....++++.+++..++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 888888887653           58899998875332  2211 222233567788999999988 4558999


Q ss_pred             EeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEe-CC-----CeEEEEeCCCceeeEee----eCCccceEEEEEc
Q psy6984         133 WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WD-----RMVKVWNLTNCKLKINH----SGHTGYLNTVTVS  202 (380)
Q Consensus       133 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----~~v~iwd~~~~~~~~~~----~~~~~~i~~~~~~  202 (380)
                      ||..+..-...........-.++++.+++  .+++.|+ .+     ..+.+||..+.+-....    ......-....+.
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCC--eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            99765432211111111222344555544  3667776 34     56899999876533210    0000000001123


Q ss_pred             CCCCEEEEEcCCC---------cEEEEECCCCcEE
Q psy6984         203 PDGSLCASGGKDM---------NAMLWDLNDGKHL  228 (380)
Q Consensus       203 ~~~~~l~~~~~d~---------~i~i~d~~~~~~~  228 (380)
                      .++..++.|+.++         .+..||..+....
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~  382 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  382 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCccee
Confidence            4555556665544         4577887766533

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.47  E-value=0.00028  Score=57.79  Aligned_cols=205  Identities=12%  Similarity=0.143  Sum_probs=125.9

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      ..|.|-.+.+..|+++|+...+++....++.|...|.. ......++   +.+. .....+++.+++.++++.-.++.+.
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~---l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP---LDFV-KDLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE---CSSC-SSEEEEEECSTTEEEEEETTTTEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe---cCCC-CChHHeEEeCCCEEEEEECCCCcEE
Confidence            56778878899999999743344446667777766654 22111111   2222 3467888888887777766678899


Q ss_pred             EEECCCCce---eeeec------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC---CcceEEEee------CCCcCc
Q psy6984          90 LWDLAAGKT---TRRFE------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL---AHCKFTIVE------DGHSDW  151 (380)
Q Consensus        90 vwd~~~~~~---~~~~~------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~---~~~~~~~~~------~~~~~~  151 (380)
                      ++++.....   +....      ......-.++++|++..|.++.......+|...   .........      ..+...
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence            998765432   12221      123446899999999877776655555555432   111122221      112234


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee---CC------ccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS---GH------TGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~---~~------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      +..++++|... .+++.....+.+..+|.... ....+.   +.      ......++|+++|+++++ +.-+.++.+.-
T Consensus       175 ~S~l~~dp~tg-~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          175 VSGAEFNQQKN-TLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             CCEEEEETTTT-EEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             ceeEEEcCCCC-eEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            67899999754 35566666788889997754 322222   11      136788999999987666 55556666643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.44  E-value=9.1e-05  Score=68.87  Aligned_cols=151  Identities=15%  Similarity=0.081  Sum_probs=92.5

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCceeeeecccCC-C----------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEE
Q psy6984          76 GNYALSGSW-DKTLRLWDL-AAGKTTRRFEDHTK-D----------VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  142 (380)
Q Consensus        76 ~~~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~-~----------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~  142 (380)
                      +..++.++. ++.|.-+|. .+++.+.++..... .          -..++.  ++..++.++.|+.+..+|..++....
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            456777777 889999999 89988877643211 0          011222  35678888889999999987766654


Q ss_pred             EeeCCC-c--CcEE-EEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCccc-----------------
Q psy6984         143 IVEDGH-S--DWVS-CVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHTGY-----------------  195 (380)
Q Consensus       143 ~~~~~~-~--~~v~-~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~-----------------  195 (380)
                      ...... .  ..+. ...+. +   ..++.++.      ++.|..+|.++++...........                 
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~-~---g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G  215 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA-K---DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T---TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EecCCCCCccceeccCCEEE-C---CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccc
Confidence            433221 0  0111 11111 1   24555544      789999999998876554321100                 


Q ss_pred             --------------------e-EEEEEcCCCCEEEEEcCC----------------CcEEEEECCCCcEEEEEE
Q psy6984         196 --------------------L-NTVTVSPDGSLCASGGKD----------------MNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       196 --------------------i-~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~  232 (380)
                                          + ..++++++...+..+..+                +.|..+|..+++.+..+.
T Consensus       216 ~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~  289 (571)
T 2ad6_A          216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQ  289 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred             ccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEec
Confidence                                0 135677766666665532                359999999999887765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=0.0017  Score=62.92  Aligned_cols=279  Identities=10%  Similarity=0.046  Sum_probs=155.2

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc---------cccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP---------QKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~---------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      ..|.+|...++ + .|..|+..+-|.+++........-..         .....-....|.++...++|. |-.|..++-
T Consensus       258 ~~i~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          258 SYIFSIKQLKD-N-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCEEEEEECTT-S-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             ceEEEEEECCC-C-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            56888887655 3 45556664567777765432111000         000112345689999988886 555666677


Q ss_pred             EEEEECCCCceeeeec---------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe--eCCCcCcEEEEE
Q psy6984          88 LRLWDLAAGKTTRRFE---------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV--EDGHSDWVSCVR  156 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~  156 (380)
                      |..++..++.......         -....|.++...++|... .|+.++-+..|+..+.......  .......|.++.
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL  413 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence            8899877654332210         123468899888877654 5565555888885432211110  012335688888


Q ss_pred             EccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe-
Q psy6984         157 FSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH-  233 (380)
Q Consensus       157 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-  233 (380)
                      ..+++.   |..|..++-+..+|..+.+......  .....|.++..+++|++.+ |+. +-+..+|..+++....... 
T Consensus       414 ~d~~g~---lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          414 KDSEGN---LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             ECTTSC---EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTT
T ss_pred             ECCCCC---EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCc
Confidence            765442   5557776788899987665433221  1245688898888887554 444 5688999877653322211 


Q ss_pred             -----cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee--c-cccceeEEEEeecCCEEEEeeCCCc
Q psy6984         234 -----NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF--S-LFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       234 -----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                           ...+.++...+++..-       .......+..++...++...-..  + ....|.++...++|...++. .+|.
T Consensus       489 ~~~~~~~~i~~i~~d~~g~lW-------igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Gl  560 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDSEGRFW-------IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGL  560 (781)
T ss_dssp             TSSCSCSCEEEEEECTTCCEE-------EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred             ccccccceeEEEEEcCCCCEE-------EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCc
Confidence                 2346666655554321       11122345555554443322110  1 12357788888888866654 3665


Q ss_pred             EEEEecc
Q psy6984         306 IKLWNTL  312 (380)
Q Consensus       306 v~iw~~~  312 (380)
                      |..|+..
T Consensus       561 v~~~d~~  567 (781)
T 3v9f_A          561 VCFPSAR  567 (781)
T ss_dssp             EEESCTT
T ss_pred             eEEECCC
Confidence            4667643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=0.0018  Score=62.83  Aligned_cols=320  Identities=10%  Similarity=-0.007  Sum_probs=171.7

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccc---ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEEC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKR---LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   93 (380)
                      ..|.+|...++ +.+.+ |..+ -+.+|+....... ......   ..-....|.++...++|. |..|...+-|.++|.
T Consensus       211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~  285 (781)
T 3v9f_A          211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFT-NFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL  285 (781)
T ss_dssp             SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEE-C-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred             CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEE-EEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence            45888877665 34444 4444 5778875432111 000000   011235688998888876 445666456889998


Q ss_pred             CCCceeeeec--------------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee--------CCCcCc
Q psy6984          94 AAGKTTRRFE--------------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE--------DGHSDW  151 (380)
Q Consensus        94 ~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~--------~~~~~~  151 (380)
                      .+++......              -....|.++...++|. +..|+.++-|..++...........        ......
T Consensus       286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  364 (781)
T 3v9f_A          286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV  364 (781)
T ss_dssp             TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred             CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence            7664332111              1235689999888886 4456656668888765432222211        112346


Q ss_pred             EEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee---eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         152 VSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH---SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       152 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                      |.++...+++.   |..|+.++-|..||..+.......   ......|.++..+++|++.+ |+.++-+..+|..+++..
T Consensus       365 v~~i~~d~~g~---lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          365 VSSVCDDGQGK---LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             EEEEEECTTSC---EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             eEEEEEcCCCC---EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            88888776542   556666677888998764432211   12235688898888887654 666677889988766532


Q ss_pred             EEEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc-----ccceeEEEEeecCCEEEEe
Q psy6984         229 HTLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL-----FRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       229 ~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~  300 (380)
                      ....   ....|.++...+++..-       .... ..+..++..+++........     ...|.++...++|+..+..
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lw-------igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIW-------IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEE-------EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred             EeccCCCCCCeEEEEEECCCCCEE-------EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence            2211   12446666655544321       1111 34666665554432211111     2457888888888876654


Q ss_pred             eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      ..+| +..++...+. .           .....     ........|.++...++|++.++ +.+|.|..|+.
T Consensus       513 ~~~G-l~~~~~~~~~-~-----------~~~~~-----~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~  566 (781)
T 3v9f_A          513 FGGG-VGIYTPDMQL-V-----------RKFNQ-----YEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSA  566 (781)
T ss_dssp             SSSC-EEEECTTCCE-E-----------EEECT-----TTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCT
T ss_pred             cCCC-EEEEeCCCCe-E-----------EEccC-----CCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECC
Confidence            3345 5556543221 1           11110     00112334677777788886664 33665455553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.38  E-value=0.00052  Score=59.55  Aligned_cols=206  Identities=10%  Similarity=-0.003  Sum_probs=124.5

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCC
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~   96 (380)
                      .+..++|++....++++-...+.|..+++......     ............+++.+.+..| ++-...+.|.+.++...
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-----~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  148 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA  148 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCce-----EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence            45778888764444444445678888876543211     1111112335678888755555 45555678999998755


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEE-EEeCC-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRD-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      .....+.........++++|.+..+. +-... +.|...++.......... ..-.....++++|.... ++++-...+.
T Consensus       149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGla~d~~~~~-lY~aD~~~~~  226 (349)
T 3v64_C          149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRR-MYWVDAKHHV  226 (349)
T ss_dssp             SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-SSCSCEEEEEEETTTTE-EEEEETTTTE
T ss_pred             ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCcceEEEeCCCCE-EEEEECCCCE
Confidence            43333333345678999999666555 44444 678777765543332222 22345788999986543 4455556788


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      |..+|+..................+++ ..+.++++-...+.|..++..+++....+
T Consensus       227 I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          227 IERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            999998754433333333456777888 35566677777788888886666544443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.37  E-value=0.00037  Score=64.89  Aligned_cols=153  Identities=9%  Similarity=0.027  Sum_probs=95.9

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCceeeeecccCCC-----------eEEEEEeCCCCE----EEEEeCCCcEEEEeCCCc
Q psy6984          76 GNYALSGSW-DKTLRLWDL-AAGKTTRRFEDHTKD-----------VLSVAFSVDNRQ----IVSSSRDKTIKLWNTLAH  138 (380)
Q Consensus        76 ~~~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~~-----------v~~~~~~~~~~~----~~s~~~d~~v~iwd~~~~  138 (380)
                      +..++.++. ++.|.-+|. .+|+.+.++......           ...++.+|.+..    ++.++.|+.+..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            556777777 889999999 899988776432210           123455444444    788889999999998777


Q ss_pred             ceEEEeeCCCc---CcEE-EEEEccCCCCCEEEEEe------CCCeEEEEeCCCceeeEeeeCCccc-------------
Q psy6984         139 CKFTIVEDGHS---DWVS-CVRFSPNHQNPIIVSAG------WDRMVKVWNLTNCKLKINHSGHTGY-------------  195 (380)
Q Consensus       139 ~~~~~~~~~~~---~~v~-~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~-------------  195 (380)
                      ...........   ..+. ...+. +   ..++.++      .++.|+.+|.++++....+......             
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~---g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-K---DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T---TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CEEEeecCCCCCccceeecCCEEE-C---CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            66544332210   0111 11111 1   1355444      3789999999998876554322110             


Q ss_pred             ------------------------e-EEEEEcCCCCEEEEEcCC----------------CcEEEEECCCCcEEEEEE
Q psy6984         196 ------------------------L-NTVTVSPDGSLCASGGKD----------------MNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       196 ------------------------i-~~~~~~~~~~~l~~~~~d----------------~~i~i~d~~~~~~~~~~~  232 (380)
                                              + ..+++++...++..+..+                +.|..+|..+++....+.
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q  295 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ  295 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee
Confidence                                    0 134667777777777654                379999999999887765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.36  E-value=0.00035  Score=57.00  Aligned_cols=126  Identities=6%  Similarity=-0.029  Sum_probs=82.6

Q ss_pred             eeeeecccCCC--eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeE
Q psy6984          98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV  175 (380)
Q Consensus        98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v  175 (380)
                      .++++ .|...  ...+.|+ ++.+..+.+.++.|+.+|+.+++..... ......-..+.+.  +. .++...-.++.+
T Consensus        45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~-~Ly~ltw~~~~v  118 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GE-RLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SS-CEEEEESSSCEE
T ss_pred             EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CC-EEEEEEccCCEE
Confidence            44555 34433  4688887 4666778888899999998776555444 2222222345543  33 355556668899


Q ss_pred             EEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      .+||..+.+....++.. ..-+.++  ++++.|+.+..++.|.++|..+.+.+..+.
T Consensus       119 ~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             EEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence            99999998887766532 2223343  567777777779999999999888766553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.33  E-value=0.0011  Score=61.71  Aligned_cols=161  Identities=12%  Similarity=0.076  Sum_probs=88.7

Q ss_pred             CCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceE-EEEEcc---CCC-EEEEEe------CCCcEEEEECCCCc
Q psy6984          29 PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS-DIVLSS---DGN-YALSGS------WDKTLRLWDLAAGK   97 (380)
Q Consensus        29 ~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~---~~~-~l~s~~------~d~~i~vwd~~~~~   97 (380)
                      +..++.++.|+.+..+|....+............ ...+. ...+..   +|+ .+++++      .++.|+.+|..+|+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~-~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~  195 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-GYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE  195 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG-TCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc-CcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence            3567778888998888876544332211110000 00011 111111   233 566654      37899999999998


Q ss_pred             eeeeecccCCC-----------------------------------------eEEEEEeCCCCEEEEEeC----------
Q psy6984          98 TTRRFEDHTKD-----------------------------------------VLSVAFSVDNRQIVSSSR----------  126 (380)
Q Consensus        98 ~~~~~~~h~~~-----------------------------------------v~~~~~~~~~~~~~s~~~----------  126 (380)
                      .+.........                                         -...+++|+...++.+..          
T Consensus       196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            87654321000                                         012456677777776653          


Q ss_pred             ----------C----CcEEEEeCCCcceEEEeeCC-CcCc----EEE-EEEc---cCCCC-CEEEEEeCCCeEEEEeCCC
Q psy6984         127 ----------D----KTIKLWNTLAHCKFTIVEDG-HSDW----VSC-VRFS---PNHQN-PIIVSAGWDRMVKVWNLTN  182 (380)
Q Consensus       127 ----------d----~~v~iwd~~~~~~~~~~~~~-~~~~----v~~-~~~~---~~~~~-~~l~s~~~d~~v~iwd~~~  182 (380)
                                |    +.|..+|..++......... |..+    +.. +.+.   .+++. .+++.++.+|.+.++|..+
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    57888998777665544332 2211    111 1111   22221 3677889999999999998


Q ss_pred             ceeeEeee
Q psy6984         183 CKLKINHS  190 (380)
Q Consensus       183 ~~~~~~~~  190 (380)
                      ++++....
T Consensus       356 G~~lw~~~  363 (582)
T 1flg_A          356 GKLQNAFP  363 (582)
T ss_dssp             CCEEEEEE
T ss_pred             CCEecccc
Confidence            88765543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.30  E-value=0.00086  Score=54.18  Aligned_cols=173  Identities=12%  Similarity=0.086  Sum_probs=112.5

Q ss_pred             cceEEEEEccCCCEEEEEeCCC--cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceE
Q psy6984          65 HFISDIVLSSDGNYALSGSWDK--TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~  141 (380)
                      .+...+.|+. +.+..+.+.+|  .|+++|+.+++.+....-.. ........+++..+ ...-.++.+.++|..+....
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3466788886 55666667654  89999999999988765322 23323233334444 45567889999998776655


Q ss_pred             EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC--C---ccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         142 TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG--H---TGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       142 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      ..+..+...  ..++  +++. .+++|- .++.|.++|..+.+......-  +   ...++.+.+. +|+.++..-.+..
T Consensus        99 ~ti~~~~~G--wglt--~dg~-~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~  171 (243)
T 3mbr_X           99 ARFRYPGEG--WALT--SDDS-HLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR  171 (243)
T ss_dssp             EEEECSSCC--CEEE--ECSS-CEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEeCCCCc--eEEe--eCCC-EEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence            555433332  2333  4443 345554 478999999998776544432  1   1345667765 6777777767889


Q ss_pred             EEEEECCCCcEEEEEEec--------------CceEEEEeecCc
Q psy6984         217 AMLWDLNDGKHLHTLVHN--------------DIITALCFSPNR  246 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~--------------~~i~~~~~~~~~  246 (380)
                      |.+.|..+++.+..+...              +..+.++++|+.
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~  215 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH  215 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC
Confidence            999999999998887532              234667777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.30  E-value=0.00057  Score=60.22  Aligned_cols=207  Identities=10%  Similarity=-0.004  Sum_probs=125.0

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~   95 (380)
                      ..+..++|++....++++-...+.|..+++......     ............+++.+.+..| ++-...+.|.+.++..
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-----~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-----EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-----EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-----EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence            346678888764444444445677888876543210     1111112234678888755555 4545567898888875


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEe-CC-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RD-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ......+.........++++|.+..|..+. .. +.|...++.......... ..-.+...++++|.... ++++-...+
T Consensus       191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~-lY~aD~~~~  268 (386)
T 3v65_B          191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYAGRR-MYWVDAKHH  268 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGGGTE-EEEEETTTT
T ss_pred             CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCE-EEEEECCCC
Confidence            443333333345678999998776665444 34 677777765544333332 22345788999976543 455556678


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      .|..+|+..................+++ ..+.++++-...+.|..++..+++....+
T Consensus       269 ~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          269 VIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            8999998754433333333456778888 44566677777888888886666654444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.29  E-value=0.00022  Score=68.76  Aligned_cols=160  Identities=8%  Similarity=0.081  Sum_probs=94.1

Q ss_pred             cCCCc-ceEEEEEc-cCCCEEEEEe-CCC----cEEEEECCCC-ceeee-ecccCCCeEEEEEeCCCCEEEEEeCC----
Q psy6984          61 KGHSH-FISDIVLS-SDGNYALSGS-WDK----TLRLWDLAAG-KTTRR-FEDHTKDVLSVAFSVDNRQIVSSSRD----  127 (380)
Q Consensus        61 ~~h~~-~v~~~~~~-~~~~~l~s~~-~d~----~i~vwd~~~~-~~~~~-~~~h~~~v~~~~~~~~~~~~~s~~~d----  127 (380)
                      .+|.. .+....|| |||++|+-+. .+|    .|+++|+.++ +.+.. +.   .....++|+|||+.|+....|    
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence            34443 57789999 9999887543 233    4999999988 63221 11   113467899999988776654    


Q ss_pred             -CcEEEEeCCCcc--eEEEeeCCCcCcEEEEEEccCCCCCEEEEEe--CCCeEEEEeCCCc--ee--eEeeeCCccceEE
Q psy6984         128 -KTIKLWNTLAHC--KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAG--WDRMVKVWNLTNC--KL--KINHSGHTGYLNT  198 (380)
Q Consensus       128 -~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~--~~--~~~~~~~~~~i~~  198 (380)
                       ..|..+++.+..  ...............+.++|+++. ++++..  ....|.++|+.+.  +.  .............
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~-l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT-LCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE-EEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE-EEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence             246667765432  122222233345677899998764 333332  2456888898764  22  2222333444555


Q ss_pred             EEEcCCCCEEEEEcCC----CcEEEEECCC
Q psy6984         199 VTVSPDGSLCASGGKD----MNAMLWDLND  224 (380)
Q Consensus       199 ~~~~~~~~~l~~~~~d----~~i~i~d~~~  224 (380)
                      +.|+..+.+++....+    ..|..+|+.+
T Consensus       325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             EEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            5555444444554443    3677777764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.20  E-value=0.0015  Score=52.83  Aligned_cols=127  Identities=9%  Similarity=-0.015  Sum_probs=81.2

Q ss_pred             eeeeecccCCC--eEEEEEeCCCCEEEEEeCC--CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          98 TTRRFEDHTKD--VLSVAFSVDNRQIVSSSRD--KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        98 ~~~~~~~h~~~--v~~~~~~~~~~~~~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      .++++ .|...  ...+.|++ +.+..+.+..  ..|+.+|+.++.............-..+.+..  . .++...-.++
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--~-~ly~ltw~~~   85 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--D-RLIQLTWRNH   85 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--T-EEEEEESSSS
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC--C-EEEEEEeeCC
Confidence            44555 45443  56889986 5556666665  48999999887666554433222223344432  2 2444556688


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      .+.++|..+.+....++... .-+.++  +++..|+.+..++.|.++|..+.+.+..+.
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            99999999988777665322 224444  556666666668899999999887765553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.19  E-value=0.0024  Score=55.28  Aligned_cols=240  Identities=9%  Similarity=-0.022  Sum_probs=134.9

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeC
Q psy6984          68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVED  146 (380)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~  146 (380)
                      +|....++. +|+.+ ....|+..++...+....+.. ...+..++|++....|. +-...+.|..++............
T Consensus        37 ~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           37 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             CEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             cccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            455545533 33333 334688888876555444333 34578999997666555 555678888888765443333322


Q ss_pred             CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC-EEEEEcCC-CcEEEEECCC
Q psy6984         147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGGKD-MNAMLWDLND  224 (380)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d-~~i~i~d~~~  224 (380)
                      + ......+++.+.+.. ++++-...+.|.+.++..................++++|.+. ++++-... +.|..+++..
T Consensus       114 ~-~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          114 G-LESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             S-CSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             C-CCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            2 223467888875433 556666678999999876543333333445678999999555 45555455 7888888764


Q ss_pred             CcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984         225 GKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD  303 (380)
Q Consensus       225 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  303 (380)
                      ........ .-.....++++|+....-.     .......+..++...................+++ ..+..+++-...
T Consensus       192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~-----aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~  265 (349)
T 3v64_C          192 SGRRIIADTHLFWPNGLTIDYAGRRMYW-----VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT  265 (349)
T ss_dssp             CSCEESCCSSCSCEEEEEEETTTTEEEE-----EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred             CCcEEEEECCCCCcceEEEeCCCCEEEE-----EECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence            33222211 1234678888875432111     1122345566665543222212122234456777 345555555567


Q ss_pred             CcEEEEecccceeee
Q psy6984         304 KTIKLWNTLAHCKFT  318 (380)
Q Consensus       304 g~v~iw~~~~~~~~~  318 (380)
                      +.|...+..++....
T Consensus       266 ~~V~~~~~~~G~~~~  280 (349)
T 3v64_C          266 KSINSANKFTGKNQE  280 (349)
T ss_dssp             TEEEEEETTTCCSCE
T ss_pred             CeEEEEEccCCCccE
Confidence            778777754544433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.18  E-value=0.0023  Score=54.61  Aligned_cols=207  Identities=9%  Similarity=0.011  Sum_probs=125.5

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCC
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~   96 (380)
                      .+..++|++..+.++.+-...+.|..+++.......    ..+.........+++.+.+..| ++-...+.|.++++...
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~----~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ----NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC----EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE----EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            455778887634444444456788888765431110    0111112245678888754444 55556688999998754


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      ...............++++|.+..++.+..  .+.|...++.......... ..-...+.+++++.... ++++-...+.
T Consensus       112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~~~~-lY~aD~~~~~  189 (318)
T 3sov_A          112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQK-LYWADAKLNF  189 (318)
T ss_dssp             SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTE-EEEEETTTTE
T ss_pred             cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEeccCCE-EEEEECCCCE
Confidence            333333334456789999987666665542  4677777765443333332 22345688999986543 4455566788


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      |..+|+..........+.......+++.. +.++.+-...+.|..++..+++....+
T Consensus       190 I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          190 IHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            99999875443333333445677788764 456666777889999998777654444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.18  E-value=0.0029  Score=55.69  Aligned_cols=241  Identities=10%  Similarity=-0.027  Sum_probs=135.0

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceEEEeeC
Q psy6984          68 SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVED  146 (380)
Q Consensus        68 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~  146 (380)
                      .|.+..+++ +|+.+ ....|+..++...+....+.. ...+..++|++.+..| ++-...+.|..++............
T Consensus        80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  156 (386)
T 3v65_B           80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  156 (386)
T ss_dssp             CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred             eECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence            344444433 44433 345788888877655444433 3457899999765555 4555678888888765543333322


Q ss_pred             CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCC-CcEEEEECCC
Q psy6984         147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKD-MNAMLWDLND  224 (380)
Q Consensus       147 ~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d-~~i~i~d~~~  224 (380)
                      + ......+++.+.... ++++-...+.|.+.++..................++++|.+..| ++-... +.|..+++..
T Consensus       157 ~-~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          157 G-LESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             S-CSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             C-CCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            2 223456788765433 55566667789888887544333333344568899999866544 444444 7888888764


Q ss_pred             CcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC
Q psy6984         225 GKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD  303 (380)
Q Consensus       225 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  303 (380)
                      ........ .-.....++++|+....-.     .......+..++.........+.........+++ ..+..+.+-...
T Consensus       235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~-----aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~  308 (386)
T 3v65_B          235 SGRRIIADTHLFWPNGLTIDYAGRRMYW-----VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT  308 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEEGGGTEEEE-----EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred             CCcEEEEECCCCCeeeEEEeCCCCEEEE-----EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCC
Confidence            43222221 1234678888875432111     1122344555555433222222222234556777 445555565567


Q ss_pred             CcEEEEecccceeeeE
Q psy6984         304 KTIKLWNTLAHCKFTI  319 (380)
Q Consensus       304 g~v~iw~~~~~~~~~~  319 (380)
                      +.|..++..++.....
T Consensus       309 ~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          309 KSINSANKFTGKNQEI  324 (386)
T ss_dssp             TEEEEEETTTCCSCEE
T ss_pred             CeEEEEECCCCcceEE
Confidence            7888887555544333

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.16  E-value=0.0026  Score=54.27  Aligned_cols=211  Identities=9%  Similarity=-0.024  Sum_probs=125.6

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~   95 (380)
                      ..+..+++++..+.++++-...+.|..+++....... .....+.........+++.+.+..| ++-...+.|.+.++..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~-~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc-ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            4466788887644455555556888888875410000 0011111122345788898755555 4546678999999875


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeCC--CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD--KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ......+.........++++|.+..++.+...  +.|...++.......... ..-.....+++++.... ++++-...+
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gla~d~~~~~-lY~~D~~~~  186 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKLH  186 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTE-EEEEETTTT
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE-CCCCCceEEEEeccCCE-EEEEECCCC
Confidence            44333333333567899999976666554443  677777765443333322 23356788999986543 445555678


Q ss_pred             eEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         174 MVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      .|..+|+..........  ........+++. .+.++++-...+.|..++..+++.+..+
T Consensus       187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             eEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            99999987543322222  123456778885 4666777777889999998777655444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=0.0036  Score=55.94  Aligned_cols=154  Identities=9%  Similarity=0.062  Sum_probs=95.9

Q ss_pred             ceEEEEEcc-CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeC-CC----cEEEEeCCCcc
Q psy6984          66 FISDIVLSS-DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-DK----TIKLWNTLAHC  139 (380)
Q Consensus        66 ~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d~----~v~iwd~~~~~  139 (380)
                      ....++++| ++..|+.+...+.|+.+|+.+++..... ........++|+++++.++.+.. ++    .+...+.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            346889998 4566766666588999999876554433 34456789999999996655543 22    23333322211


Q ss_pred             e-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCC-EEEEEcCCCc
Q psy6984         140 K-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGS-LCASGGKDMN  216 (380)
Q Consensus       140 ~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~  216 (380)
                      . ...+..  ......++++|... .++++-..++.|..++........ ...+.......++++|+|+ ++++-...+.
T Consensus       217 ~~~~~l~~--~~~p~giavdp~~g-~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          217 KVITELTK--GQNCNGAETHPING-ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             CSEEEEEE--CSSCCCEEECTTTC-CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeecc--CCCceEEEEeCCCC-EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            1 011111  12245678888432 355665667899999998665422 2222234578899999999 5556667789


Q ss_pred             EEEEECC
Q psy6984         217 AMLWDLN  223 (380)
Q Consensus       217 i~i~d~~  223 (380)
                      |..++..
T Consensus       294 I~~~~~d  300 (430)
T 3tc9_A          294 ILRSDYD  300 (430)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            9998765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.08  E-value=0.00045  Score=65.56  Aligned_cols=114  Identities=14%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             EEEEeC-CCCEEEEEeCCC-----------cEEEEeCCCcce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEe-CCCeE
Q psy6984         111 SVAFSV-DNRQIVSSSRDK-----------TIKLWNTLAHCK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAG-WDRMV  175 (380)
Q Consensus       111 ~~~~~~-~~~~~~s~~~d~-----------~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d~~v  175 (380)
                      ..++.+ +++.++.|+.+.           .+.+||..+..-  .......+.....++++..++  .+++.|+ .+..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g--~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG--QIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS--CEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC--CEEEeCCCCCCce
Confidence            566777 888888887543           578888755431  122222233333345666654  3677776 45689


Q ss_pred             EEEeCCCceeeEeeeCCc-cceEEEEEcCCCCEEEEEc-CC-----CcEEEEECCCCc
Q psy6984         176 KVWNLTNCKLKINHSGHT-GYLNTVTVSPDGSLCASGG-KD-----MNAMLWDLNDGK  226 (380)
Q Consensus       176 ~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~  226 (380)
                      .+||..+.+-......+. ..-.++...++|++++.|+ .+     ..+.+||..+.+
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            999987654332211111 1123455667999999998 34     568999998765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.07  E-value=0.0015  Score=62.95  Aligned_cols=194  Identities=11%  Similarity=0.089  Sum_probs=105.6

Q ss_pred             ceEEEEeC-CCCCCeEE-EeeCCC----eEEEeecCCC-CCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-----
Q psy6984          18 WVTQIATN-PKFPDTIL-SCSRDN----TLIIWKLTRD-DTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-----   85 (380)
Q Consensus        18 ~v~~i~~~-~~~~~~l~-t~~~dg----~v~vw~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----   85 (380)
                      .+....++ |+ +++|| +.+.+|    +|+++|+... ..   ++ ..+.   .....+.|+|||+.|+....|     
T Consensus       175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~---l~-~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQT---IA-DKVS---GTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCC---CC-CCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEe---CC-cccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence            67788999 88 56555 333333    5899988654 21   11 1111   123468899999988877665     


Q ss_pred             CcEEEEECCCCcee--eeec-ccCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCcc-eE--EEeeCCCcCcEEEEE
Q psy6984          86 KTLRLWDLAAGKTT--RRFE-DHTKDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLAHC-KF--TIVEDGHSDWVSCVR  156 (380)
Q Consensus        86 ~~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~~~s~~~---d~~v~iwd~~~~~-~~--~~~~~~~~~~v~~~~  156 (380)
                      ..|+++++.+++..  ..+. ....-...+.|+|||++|+..+.   ...+.++|+.+.. ..  ..+..........+.
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            36888998776432  2222 22234567899999998876552   3356677765531 22  233233334444555


Q ss_pred             EccCCCCCEEEEEeCC----CeEEEEeCCCc-eeeEeeeCCcc--ceEEEEEcCCCCEEEEEcCCCcE--EEEEC
Q psy6984         157 FSPNHQNPIIVSAGWD----RMVKVWNLTNC-KLKINHSGHTG--YLNTVTVSPDGSLCASGGKDMNA--MLWDL  222 (380)
Q Consensus       157 ~~~~~~~~~l~s~~~d----~~v~iwd~~~~-~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~i--~i~d~  222 (380)
                      |+. +.. +++....+    ..|..+|+.+. ........+..  .+..+.+. .+.++++...++..  .++|+
T Consensus       327 ~~~-g~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          327 MHG-TSH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EET-TTE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eee-CCE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            433 232 33443332    36777777642 21110112222  34455554 23455666667754  45565

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.05  E-value=0.0061  Score=54.48  Aligned_cols=154  Identities=12%  Similarity=0.088  Sum_probs=90.6

Q ss_pred             ceEEEEEccC--CCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---Cc-EEEEeCCCcc
Q psy6984          66 FISDIVLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---KT-IKLWNTLAHC  139 (380)
Q Consensus        66 ~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---~~-v~iwd~~~~~  139 (380)
                      ....++++|+  ...|..+...+.|+.+|..+++..... ........++++++|.++++....   .. +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3568999984  445665555489999999877665443 334568899999999944444321   12 2223221111


Q ss_pred             e-EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-eEee-eCCccceEEEEEcCCCC-EEEEEcCCC
Q psy6984         140 K-FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-KINH-SGHTGYLNTVTVSPDGS-LCASGGKDM  215 (380)
Q Consensus       140 ~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~  215 (380)
                      . .....  .......++++|... .++++-..++.|+.+|..++.. .... .+.......++++|+|+ ++++-...+
T Consensus       219 ~~~~~~~--~~~~P~giavd~~~G-~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          219 TERLSLC--NARGAKTCAVHPQNG-KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             CCEEEEE--ECSSBCCCEECTTTC-CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             ecccccc--ccCCCCEEEEeCCCC-eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            1 01111  112234577887332 2555555678899999876554 1111 12222345699999998 455556678


Q ss_pred             cEEEEECC
Q psy6984         216 NAMLWDLN  223 (380)
Q Consensus       216 ~i~i~d~~  223 (380)
                      .|+.+++.
T Consensus       296 ~I~~~~~d  303 (433)
T 4hw6_A          296 CIYRVDYN  303 (433)
T ss_dssp             EEEEEEBC
T ss_pred             EEEEEeCC
Confidence            88888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.01  E-value=0.0067  Score=53.59  Aligned_cols=213  Identities=8%  Similarity=-0.023  Sum_probs=128.2

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCC-EEEEEeCCCcEEEEECC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGN-YALSGSWDKTLRLWDLA   94 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~   94 (380)
                      ...+..|++++....++++-...+.|+.+++..... .................+++.+.+. +.++-...+.|.+.++.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            356778888876444444444567888887653210 0001111222233567889987444 44455567889999987


Q ss_pred             CCceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984          95 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus        95 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      .......+.........++++|.+..|+.+..  .+.|...++.......... ..-.+...|++++.... ++++-...
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~~~~-lY~aD~~~  267 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKL  267 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETTTTE-EEEEETTT
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeCCCE-EEEEECCC
Confidence            65544444334456789999997666655442  3678888776544433332 23356788999986543 44454556


Q ss_pred             CeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE
Q psy6984         173 RMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       173 ~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  232 (380)
                      ..|..+|+...........  .......+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus       268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             TEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            8899999876443333222  23456677774 44566677778899999977776655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.97  E-value=0.0059  Score=54.54  Aligned_cols=196  Identities=8%  Similarity=0.005  Sum_probs=108.9

Q ss_pred             ceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC-----cEEEE
Q psy6984          18 WVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK-----TLRLW   91 (380)
Q Consensus        18 ~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~i~vw   91 (380)
                      ....|++.|+ ....|+.+...+.|+.++......      ..+.........++++++|+ |+.+...+     .+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v------~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV------DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE------EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE------EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence            4567788873 123444444437788887643211      11222334578999999999 54444321     23333


Q ss_pred             ECCCCcee-eeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcce-EEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          92 DLAAGKTT-RRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCK-FTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        92 d~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      +...+... ..+. .......++++| ++.+.++-..++.|+.+|...+.. ......+....-..++++|++.. ++++
T Consensus       213 ~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~-LYva  290 (433)
T 4hw6_A          213 TRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW-AYII  290 (433)
T ss_dssp             CGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE-EEEE
T ss_pred             ECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE-EEEE
Confidence            32221110 1111 223456688899 677666666778899998764433 22222222333456999997642 4555


Q ss_pred             EeCCCeEEEEeCCC--ceee--EeeeC---------------CccceEEEEE---------cCCCCEEEEEcCCCcEEEE
Q psy6984         169 AGWDRMVKVWNLTN--CKLK--INHSG---------------HTGYLNTVTV---------SPDGSLCASGGKDMNAMLW  220 (380)
Q Consensus       169 ~~~d~~v~iwd~~~--~~~~--~~~~~---------------~~~~i~~~~~---------~~~~~~l~~~~~d~~i~i~  220 (380)
                      -...+.|+.+++..  ..+.  ..+.+               .-.....+++         +++|.++++-...++|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence            56678899988652  2110  11111               1123667888         6777777777777788877


Q ss_pred             EC
Q psy6984         221 DL  222 (380)
Q Consensus       221 d~  222 (380)
                      +.
T Consensus       371 ~~  372 (433)
T 4hw6_A          371 TP  372 (433)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0095  Score=53.17  Aligned_cols=154  Identities=5%  Similarity=0.050  Sum_probs=89.9

Q ss_pred             ceEEEEeCC-CCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-C----cEEEE
Q psy6984          18 WVTQIATNP-KFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-K----TLRLW   91 (380)
Q Consensus        18 ~v~~i~~~~-~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~----~i~vw   91 (380)
                      ....|+++| +. ..|..+...+.|+.+++.....      ..+.........+++++++++|+.+... +    .+.+.
T Consensus       138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v------~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYV------STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEE------EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEE
T ss_pred             CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEE------EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEE
Confidence            345677776 32 3444444446777777643211      1111233457889999999966666542 2    24344


Q ss_pred             ECCCCcee--eeecccCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          92 DLAAGKTT--RRFEDHTKDVLSVAFSV-DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        92 d~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      +. .+...  ..+.. ......++++| ++..+++-..++.|..++............+...+...++++|+++. ++++
T Consensus       211 ~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~-lyv~  287 (430)
T 3tc9_A          211 TR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY-AYIV  287 (430)
T ss_dssp             EG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE-EEEE
T ss_pred             eC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE-EEEE
Confidence            43 22222  22221 23456788999 77777777778889999876544322222222345678999998642 4555


Q ss_pred             EeCCCeEEEEeCC
Q psy6984         169 AGWDRMVKVWNLT  181 (380)
Q Consensus       169 ~~~d~~v~iwd~~  181 (380)
                      -...+.|..++..
T Consensus       288 d~~~~~I~~~~~d  300 (430)
T 3tc9_A          288 VVNQHYILRSDYD  300 (430)
T ss_dssp             ETTTTEEEEEEEE
T ss_pred             ECCCCEEEEEeCC
Confidence            5667889988765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.89  E-value=0.0057  Score=56.89  Aligned_cols=164  Identities=15%  Similarity=0.161  Sum_probs=102.2

Q ss_pred             EEEEccCCCEEEEEeC--------------------C----CcEEEEECCCCceeeeecc--cC--------CCeEEEEE
Q psy6984          69 DIVLSSDGNYALSGSW--------------------D----KTLRLWDLAAGKTTRRFED--HT--------KDVLSVAF  114 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~--------------------d----~~i~vwd~~~~~~~~~~~~--h~--------~~v~~~~~  114 (380)
                      ..++.|+..+++.+..                    |    +.|..+|..+++.+..++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            3566777777776663                    2    5899999999999887643  31        1221 222


Q ss_pred             e-CCCC---EEEEEeCCCcEEEEeCCCcceEEEeeCCC-cCcEE------------------------------------
Q psy6984         115 S-VDNR---QIVSSSRDKTIKLWNTLAHCKFTIVEDGH-SDWVS------------------------------------  153 (380)
Q Consensus       115 ~-~~~~---~~~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~------------------------------------  153 (380)
                      . .+|+   .++.++.+|.+.++|..+++.+....... ..+..                                    
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4674   67889999999999987765544332221 00111                                    


Q ss_pred             -------EEEEccCCCCCEEEEEe---------------------------------CCCeEEEEeCCCceeeEeeeCCc
Q psy6984         154 -------CVRFSPNHQNPIIVSAG---------------------------------WDRMVKVWNLTNCKLKINHSGHT  193 (380)
Q Consensus       154 -------~~~~~~~~~~~~l~s~~---------------------------------~d~~v~iwd~~~~~~~~~~~~~~  193 (380)
                             .++++|...  +++...                                 .++.|..||+.+++.........
T Consensus       409 ~Gg~~w~~~a~dp~~g--~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~  486 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTG--LFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL  486 (582)
T ss_dssp             TCSSCSSCCEECTTTC--CEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS
T ss_pred             ccccCCCCceECCCCC--EEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC
Confidence                   123344322  222211                                 25789999999988766554321


Q ss_pred             cceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCc
Q psy6984         194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI  236 (380)
Q Consensus       194 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  236 (380)
                       ....-.+...+.+++.++.|+.++.||.++++.+..+.....
T Consensus       487 -~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g  528 (582)
T 1flg_A          487 -PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             -CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             -CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence             121111223466788899999999999999999988876544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.89  E-value=0.009  Score=50.92  Aligned_cols=186  Identities=9%  Similarity=-0.012  Sum_probs=110.7

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceee-eecccCCC
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTR-RFEDHTKD  108 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~-~~~~h~~~  108 (380)
                      +|++-  ...|+..+++.....+.++.   . .......+.|.+..+.|+ +-...+.|..+++..+.... .+......
T Consensus         7 ll~~~--~~~I~~i~l~~~~~~~~~~~---~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~   80 (318)
T 3sov_A            7 LLYAN--RRDLRLVDATNGKENATIVV---G-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS   80 (318)
T ss_dssp             EEEEC--EEEEEEEETTCTTSCCEEEE---E-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred             EEEEc--cCeEEEEECCCCceEEEEEe---c-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCC
Confidence            44443  35888888765432222221   1 122456888988655555 44556789999987663222 22222245


Q ss_pred             eEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceee
Q psy6984         109 VLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLK  186 (380)
Q Consensus       109 v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~  186 (380)
                      ...+++.+.+. ..++-...+.|.++++.......... ........+++.|.... ++.+- +..+.|...++......
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRF  158 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeE
Confidence            66789987554 44555667789999876544333332 33345688999885432 33333 23578888888653333


Q ss_pred             EeeeCCccceEEEEEcCCCC-EEEEEcCCCcEEEEECCC
Q psy6984         187 INHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDLND  224 (380)
Q Consensus       187 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~  224 (380)
                      ..........+.++++|++. ++++=+..+.|..+|+..
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            22223345678999998655 445556678899999864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.87  E-value=0.022  Score=54.85  Aligned_cols=211  Identities=9%  Similarity=-0.022  Sum_probs=125.5

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~   95 (380)
                      ..+..|++.+....++++-...+.|+.+++...... ......+.........+++.+.++.|+ +-...+.|.+.++..
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            456678887754445555555678888876542110 001111222233467899988775555 445668999999875


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-D-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ......+.........|+++|....|+.+.. . +.|...++.......++. ..-.+...|++.+.... ++++-....
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~~~~-LYwaD~~~~  580 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKLH  580 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTE-EEEEETTTT
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecCCCe-EEEEeCCCC
Confidence            5443333334456889999997666655443 2 678887776554444433 33356788999976543 444445567


Q ss_pred             eEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         174 MVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      .|...++...........  .......|++.. +.++++-...+.|...|..+++.+..+
T Consensus       581 ~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             cEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            899999876544333332  223456677643 356666667788888887777655544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.87  E-value=0.0073  Score=49.38  Aligned_cols=186  Identities=12%  Similarity=0.115  Sum_probs=114.4

Q ss_pred             cccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeeccc-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984          59 RLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDH-TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  136 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~  136 (380)
                      .+.+-...+..++++|+++.|+ +...++.|...|.. ++.++.+.-. ....-.+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4555556799999999876554 57788899999998 7777776321 2457788888888776776677788888765


Q ss_pred             Ccce---EEEee-----CCCcCcEEEEEEccCCCCCEEEEEeCCC-eEEEEeC--CCceeeEe-e-----eCCccceEEE
Q psy6984         137 AHCK---FTIVE-----DGHSDWVSCVRFSPNHQNPIIVSAGWDR-MVKVWNL--TNCKLKIN-H-----SGHTGYLNTV  199 (380)
Q Consensus       137 ~~~~---~~~~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~--~~~~~~~~-~-----~~~~~~i~~~  199 (380)
                      ....   .....     .........+++.|.++. ++++...+. .|..|+-  ........ .     ..+...+.++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~-L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT-FWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE-EEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCE-EEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            4332   11111     122334689999997643 344443333 4444441  11111111 0     1123457889


Q ss_pred             EEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEec----------CceEEEEeecCcc
Q psy6984         200 TVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVHN----------DIITALCFSPNRS  247 (380)
Q Consensus       200 ~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~i~~~~~~~~~~  247 (380)
                      +++|. +++++....+..+..+|.. ++.+..+...          .....++|.+++.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            99995 4566667777888889865 5565555432          1456667766653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.81  E-value=0.013  Score=50.24  Aligned_cols=271  Identities=8%  Similarity=0.046  Sum_probs=135.2

Q ss_pred             ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q psy6984          16 NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   95 (380)
                      ...+.+|.+.+. ...++ ++.+|.|... .+.. ................+..+.+.+ +. +..++.++.|+. ....
T Consensus        35 ~~~~~~v~~~~~-~~~~~-~G~~g~i~~s-~DgG-~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~Dg  107 (327)
T 2xbg_A           35 TATILDMSFIDR-HHGWL-VGVNATLMET-RDGG-QTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDG  107 (327)
T ss_dssp             SSCEEEEEESSS-SCEEE-EETTTEEEEE-SSTT-SSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESST
T ss_pred             CCcEEEEEECCC-CcEEE-EcCCCeEEEe-CCCC-CCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCC
Confidence            457889988754 34555 5667765332 2211 111111111112234578888876 44 444555665543 3334


Q ss_pred             Cceeeeec---ccCCCeEEEEEeCCCCEEEEEeCCCcE-EEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          96 GKTTRRFE---DHTKDVLSVAFSVDNRQIVSSSRDKTI-KLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        96 ~~~~~~~~---~h~~~v~~~~~~~~~~~~~s~~~d~~v-~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                      ++.-....   .+...+..+.+.+++..++.+ .++.+ +-.|  .+.............+..+.+.+++  .+++.+..
T Consensus       108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~--~~~~~g~~  182 (327)
T 2xbg_A          108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSG--EYVAVSSR  182 (327)
T ss_dssp             TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTS--CEEEEETT
T ss_pred             CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCC--cEEEEECC
Confidence            54433332   233557788887777666655 45544 3222  2223333333445568888888754  35555544


Q ss_pred             CCeEEEEeC--CCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEec-----CceEEEEeec
Q psy6984         172 DRMVKVWNL--TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN-----DIITALCFSP  244 (380)
Q Consensus       172 d~~v~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~~~~~  244 (380)
                      .+..+-+|-  .+.+..  .......+..+.++++++.++.+ .+|.+++.+...++.-..+...     ..+..+.+.+
T Consensus       183 G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~  259 (327)
T 2xbg_A          183 GSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT  259 (327)
T ss_dssp             SSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred             CcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence            444444553  222222  12344567888899998776544 5677776643323322222211     2356666665


Q ss_pred             CcccceeeeeeeeeccccceEEEEcCCceeeeeee---ccccceeEEEEeecCCEEEEeeCCCcEEEEe
Q psy6984         245 NRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF---SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN  310 (380)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~  310 (380)
                      +.......       ..+.+ ....+.++-=....   .....+.++.|.+++. ++.++.+|.|.-++
T Consensus       260 ~~~~~~~g-------~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          260 PNEVWLAG-------GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             SSCEEEEE-------STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCEEEEEe-------CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            43322211       11222 23333332111111   1234677888886655 55556788776553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.81  E-value=0.0055  Score=51.77  Aligned_cols=159  Identities=8%  Similarity=0.012  Sum_probs=102.1

Q ss_pred             CCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeeeccc-----CC--CeEEEEE---eCCCCEEEEEe------
Q psy6984          63 HSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDH-----TK--DVLSVAF---SVDNRQIVSSS------  125 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~h-----~~--~v~~~~~---~~~~~~~~s~~------  125 (380)
                      ...+-.++.|.+....|..++ ..+.|..||...+.........     ..  .+..+.|   .|+++++++..      
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            334456899988666666666 7899999998765443332211     11  3578999   68877776543      


Q ss_pred             -------CCCcEEEEeCC---CcceEEEeeCC------------CcCcEEEEEEccCCCCCEEEEEeCC-CeEEEEeCCC
Q psy6984         126 -------RDKTIKLWNTL---AHCKFTIVEDG------------HSDWVSCVRFSPNHQNPIIVSAGWD-RMVKVWNLTN  182 (380)
Q Consensus       126 -------~d~~v~iwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~l~s~~~d-~~v~iwd~~~  182 (380)
                             .++.+..+|+.   +..........            .......+++.++++  ..++++.. +.|...+...
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESSCEEEEECTTS
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC--EEEeCCCCCCeEEEEeCCC
Confidence                   26789999987   44443332210            112366788887654  67777777 7777777654


Q ss_pred             ceeeEeee-----CCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         183 CKLKINHS-----GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       183 ~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      ........     ......+.++++|+|+.|++....+.|..+|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            33221111     112246789999999988887779999999986

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.73  E-value=0.036  Score=53.34  Aligned_cols=181  Identities=13%  Similarity=0.058  Sum_probs=109.5

Q ss_pred             CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCC----ceeeeecccCCCeEEE
Q psy6984          38 DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAG----KTTRRFEDHTKDVLSV  112 (380)
Q Consensus        38 dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~  112 (380)
                      ...|+..++....  +.    .+......+..++|.+....|+ +-...+.|+.+++...    .....+.........|
T Consensus       403 ~~~Ir~i~l~~~~--~~----~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL  476 (791)
T 3m0c_C          403 RHEVRKMTLDRSE--YT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  476 (791)
T ss_dssp             BSSEEEECTTSCC--CE----EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred             ccceeEeeccCCc--ce----eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence            3466766665332  11    1122234567899988655555 4445678998988753    2223333234556789


Q ss_pred             EEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeee
Q psy6984         113 AFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHS  190 (380)
Q Consensus       113 ~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~  190 (380)
                      ++.+.+..|+ +-...+.|.+.++.......++. ........|++.|.... ++++- +....|...++..........
T Consensus       477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEEEe
Confidence            9998775554 55667889999877655444443 23345788999986443 33333 223788888887655444444


Q ss_pred             CCccceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCc
Q psy6984         191 GHTGYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       191 ~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~  226 (380)
                      ......+.|++++.+.. +++=.....|..+++....
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            44467899999976554 4454566789999986543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.67  E-value=0.02  Score=48.69  Aligned_cols=223  Identities=13%  Similarity=0.045  Sum_probs=126.6

Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCC----cceEEEeeCCCcCcEEEEEEccC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLA----HCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      ..|+..|+.+.+....+. ....+..++|++++..+. +-...+.|..++...    ........ ........+++.+.
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe-CCCCCcCEEEEeec
Confidence            468999998776555443 345678999998765554 555668898888754    22222222 22233567888765


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcCC-CcEEEEECCCCcEEEEEE--ecCc
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKD-MNAMLWDLNDGKHLHTLV--HNDI  236 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d-~~i~i~d~~~~~~~~~~~--~~~~  236 (380)
                      +.+ ++++-..++.|.+.++..................++++|.+..+ ++.... +.|...++... ....+.  .-..
T Consensus        88 ~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~  165 (316)
T 1ijq_A           88 HSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQW  165 (316)
T ss_dssp             TTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSC
T ss_pred             CCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCC
Confidence            433 55565667899999987654333333334567899999966544 444333 68888887533 233332  1234


Q ss_pred             eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeec--cccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFS--LFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                      ...++++++....-.     .......+..++............  .......+++. .+..+++-...+.|..++..++
T Consensus       166 P~gla~d~~~~~lY~-----~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          166 PNGITLDLLSGRLYW-----VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             EEEEEEETTTTEEEE-----EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             ceEEEEeccCCEEEE-----EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            678888876432111     112234566666653322211111  12334567774 4555555556778888886555


Q ss_pred             eeee
Q psy6984         315 CKFT  318 (380)
Q Consensus       315 ~~~~  318 (380)
                      ....
T Consensus       240 ~~~~  243 (316)
T 1ijq_A          240 SDVN  243 (316)
T ss_dssp             CCCE
T ss_pred             cceE
Confidence            4443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.66  E-value=0.027  Score=49.73  Aligned_cols=186  Identities=11%  Similarity=0.023  Sum_probs=112.5

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCC----ceeeeeccc
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAG----KTTRRFEDH  105 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~----~~~~~~~~h  105 (380)
                      +|+.+. ...|+.-++.....  .    .+......+..++|++..+.|+-.. ..+.|+.+++...    .....+...
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~--~----~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY--T----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC--E----EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred             eeEEec-cceeEEEccCCcce--e----EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence            333333 46777777654321  1    1122334578999998766666554 5678999998652    222333333


Q ss_pred             CCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCc
Q psy6984         106 TKDVLSVAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNC  183 (380)
Q Consensus       106 ~~~v~~~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~  183 (380)
                      ......+++.+.+. +.++-...+.|.+.++........... .......+++.|.... ++.+- +..+.|...++...
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTSC
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCCC
Confidence            45678899998544 445556678898888766544444432 2344688999986432 33333 22468888888764


Q ss_pred             eeeEeeeCCccceEEEEEcCCCCEE-EEEcCCCcEEEEECCCC
Q psy6984         184 KLKINHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~  225 (380)
                      .............+.+++++++..| ++=...+.|..+|+...
T Consensus       236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            4433333344578999999866655 44456688999998643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.57  E-value=0.00052  Score=65.37  Aligned_cols=209  Identities=10%  Similarity=-0.003  Sum_probs=115.1

Q ss_pred             ceEEEEeCCCCCCeEEEe-eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCC-CEEEEEeCCCcEEEEECCC
Q psy6984          18 WVTQIATNPKFPDTILSC-SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDG-NYALSGSWDKTLRLWDLAA   95 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~-~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~   95 (380)
                      .+..|++.+.. ..|+.+ ...+.|+.+++........ ....+.........+++.+.+ +++++-...+.|.++++..
T Consensus       407 ~p~gla~d~~~-~~Ly~sD~~~~~I~~~~~~g~~~~~~-~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEETTT-TEEEECCTTTTSBEEEESCCCCC-CC-CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred             ceEEEcccccc-CeEEEEecCCCeEEEEecCCCCCCcc-eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence            34566777653 344443 4456777777653100000 001111111234567887544 4444445568899999876


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR-D-KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ......+.........++++|.+..|+.+.. . +.|...++.......+.. ..-.+...|+++|.+.. ++++-...+
T Consensus       485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~l~~PnGlavd~~~~~-LY~aD~~~~  562 (699)
T 1n7d_A          485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSKLH  562 (699)
T ss_dssp             CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-SSCSSCCCEEECTTTCC-EEEEETTTT
T ss_pred             CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-CCCCCccEEEEeccCCE-EEEEecCCC
Confidence            5433333322344677899986655544332 2 677776654433222221 12234567999987543 555666678


Q ss_pred             eEEEEeCCCceeeEeee--CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         174 MVKVWNLTNCKLKINHS--GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      .|..+++..........  ........+++..+ .++++....+.|..+|..+++.+..+
T Consensus       563 ~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             eEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            99999986543322222  12233455666654 45566667789999998777766554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.54  E-value=0.033  Score=47.56  Aligned_cols=145  Identities=11%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeC----CCC---EEEEEeC---CCcEEEEeCCC-cceEEE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV----DNR---QIVSSSR---DKTIKLWNTLA-HCKFTI  143 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~~---~~~s~~~---d~~v~iwd~~~-~~~~~~  143 (380)
                      ...+++.....+-+.+||+ +|+.++.+..  +.+..+..-|    .|+   ++++..+   +++|.+|++.. ...+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4466777778889999999 7888888753  4455555544    232   2333333   57999996531 112332


Q ss_pred             eeC---C--Cc-CcEEEEEE--ccCCCCCEEEEEeCCCeEEEEeCCC-------ceeeEeeeCCccceEEEEEcCCCCEE
Q psy6984         144 VED---G--HS-DWVSCVRF--SPNHQNPIIVSAGWDRMVKVWNLTN-------CKLKINHSGHTGYLNTVTVSPDGSLC  208 (380)
Q Consensus       144 ~~~---~--~~-~~v~~~~~--~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l  208 (380)
                      +..   .  .. ..+..+++  +|.....+++....++.+..|++..       .+++..+.. .+.+..+..++....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            211   0  11 34555666  5544334677788889999998832       233444432 3467888899988898


Q ss_pred             EEEcCCCcEEEEECC
Q psy6984         209 ASGGKDMNAMLWDLN  223 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~  223 (380)
                      ..+-.+.-|..++.+
T Consensus       195 yv~eEd~GIw~~da~  209 (355)
T 3amr_A          195 YIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EEEETTTEEEEEECS
T ss_pred             EEecccceEEEEeCC
Confidence            899888776666643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.49  E-value=0.036  Score=46.88  Aligned_cols=169  Identities=11%  Similarity=0.068  Sum_probs=103.7

Q ss_pred             ecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccccc--CCC-cceEEEEE---ccCCCEEEEEeC-
Q psy6984          12 LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK--GHS-HFISDIVL---SSDGNYALSGSW-   84 (380)
Q Consensus        12 ~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~--~h~-~~v~~~~~---~~~~~~l~s~~~-   84 (380)
                      +...+-.--++.|++..+.++++.-..++|..|+....... .+....+.  +-. ..+..+.+   .|+++++++... 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            34445555678898764444454447899999987532111 11111111  111 13578999   688777775442 


Q ss_pred             ------------CCcEEEEECC---CCceeeeec--cc-----------CCCeEEEEEeCCCCEEEEEeCC-CcEEEEeC
Q psy6984          85 ------------DKTLRLWDLA---AGKTTRRFE--DH-----------TKDVLSVAFSVDNRQIVSSSRD-KTIKLWNT  135 (380)
Q Consensus        85 ------------d~~i~vwd~~---~~~~~~~~~--~h-----------~~~v~~~~~~~~~~~~~s~~~d-~~v~iwd~  135 (380)
                                  +..|..||+.   +++.+....  ..           .....+++..++|+..++++.. +.|...+.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                        6789999998   776655432  11           1247899999999999988888 87777765


Q ss_pred             CCcceEEEeeCC----CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc
Q psy6984         136 LAHCKFTIVEDG----HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC  183 (380)
Q Consensus       136 ~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  183 (380)
                      ............    .....+.|+++|++.  .|+.....+.+..+|++..
T Consensus       167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~--~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSN--KLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             TSCCEEEEEECCCCSSSCCSCSEEEEETTTT--EEEEESSSSSEEEEECSSS
T ss_pred             CCCEEeeeeecCCCcccccCcceEEEeCCCC--EEEEEcCCCeEEEEcCCCC
Confidence            443222121111    111255899999764  4555544999999998853

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=0.06  Score=48.54  Aligned_cols=153  Identities=11%  Similarity=0.100  Sum_probs=92.3

Q ss_pred             eEEEEEcc-CCCEEE-EEeCCCcEEEEECCCCceeeeeccc---CCCeEEEEE-------eCCCCEEEEEeCCC------
Q psy6984          67 ISDIVLSS-DGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDH---TKDVLSVAF-------SVDNRQIVSSSRDK------  128 (380)
Q Consensus        67 v~~~~~~~-~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~~~~s~~~d~------  128 (380)
                      ...++|+| +...|+ +....+.|++.|+.+++.......-   ......++|       ++++..|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            46789998 344444 4444578999999887665544321   235789999       99999776665543      


Q ss_pred             -cEEEEeCCC--cce----EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC-------Ccee---------
Q psy6984         129 -TIKLWNTLA--HCK----FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT-------NCKL---------  185 (380)
Q Consensus       129 -~v~iwd~~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~-------~~~~---------  185 (380)
                       .+.+.+...  .-.    ...+..  -.....++++|... .++++-..++.|..+|+.       +...         
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             ceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence             255554322  100    011111  11234678888543 366667778889999987       3332         


Q ss_pred             ----eEeeeCCccceEEEEEcCCCCE-EEEEcCCCcEEEEEC
Q psy6984         186 ----KINHSGHTGYLNTVTVSPDGSL-CASGGKDMNAMLWDL  222 (380)
Q Consensus       186 ----~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~  222 (380)
                          .....+.......++++|+|++ +++=....+|+.++.
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence                1111122345678999999995 445556678888654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.42  E-value=0.002  Score=61.41  Aligned_cols=157  Identities=11%  Similarity=0.014  Sum_probs=92.0

Q ss_pred             ceEEEEEccCCCEEEEEe-CCCcEEEEECCC----CceeeeecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCcc
Q psy6984          66 FISDIVLSSDGNYALSGS-WDKTLRLWDLAA----GKTTRRFEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      .+..++|.+.+..|+... ..+.|+.+++..    ......+.........+++.+.+ .++++-...+.|.+.++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            356788998776666554 457899999875    22222221112234567887544 444555567789999876544


Q ss_pred             eEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC-CEEEEEcCCCcE
Q psy6984         140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG-SLCASGGKDMNA  217 (380)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i  217 (380)
                      ...++.. .......+++.|.+.. ++++- +..+.|..+++................+.|+++|++ +++++-+..+.|
T Consensus       487 ~~~l~~~-~~~~P~giavDp~~g~-ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          487 RKTLFRE-QGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             EEEECCC-SSCCCCCEECCSSSSC-CEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             eEEEEeC-CCCCcceEEEccCCCc-EEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            3333322 2233467888886544 33332 223678877775433222222223457789999864 555666677889


Q ss_pred             EEEECCC
Q psy6984         218 MLWDLND  224 (380)
Q Consensus       218 ~i~d~~~  224 (380)
                      ..+++..
T Consensus       565 ~~~d~dG  571 (699)
T 1n7d_A          565 SSIDVNG  571 (699)
T ss_dssp             EEECSSS
T ss_pred             EEEccCC
Confidence            9999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.36  E-value=0.099  Score=49.04  Aligned_cols=223  Identities=10%  Similarity=0.010  Sum_probs=126.7

Q ss_pred             CCCcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      ....|+..++.+.+....+. ..-..+..++|++.+..+. +-..++.|..+++...........+ ......+++.+.+
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-~~~P~GlAvD~~~   91 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-LDYPEGMAVDWLG   91 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-CCCcceEEEEeCC
Confidence            45679999998655433322 1234678999998666655 5556788888887654333333322 2335678887754


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCC-CCEEEEE-cCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPD-GSLCASG-GKDMNAMLWDLNDGKHLHTLVHNDIITA  239 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~i~~  239 (380)
                      .+ ++++-...+.|.+.++..................++++|. |.++++- +..+.|...++...........-.....
T Consensus        92 ~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~G  170 (628)
T 4a0p_A           92 KN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANG  170 (628)
T ss_dssp             TE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEE
T ss_pred             CE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcce
Confidence            43 5556666788999998764433333234456789999985 4444443 2356788887765443322233345677


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccce
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  315 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  315 (380)
                      ++++++....-     ........+..+++..... ..+.........+++.. +..+.+-...+.|...|..++.
T Consensus       171 lalD~~~~~LY-----~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          171 LTIDYAKRRLY-----WTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEETTTTEEE-----EEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEccccCEEE-----EEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            88877543211     1112234455555544322 12222233445666653 3444444456788877765543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.21  E-value=0.09  Score=45.41  Aligned_cols=140  Identities=13%  Similarity=0.200  Sum_probs=75.5

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--eec---ccCCCeEEEEEeCC---CCEEEEEeC-C-----CcEE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR--RFE---DHTKDVLSVAFSVD---NRQIVSSSR-D-----KTIK  131 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~---~h~~~v~~~~~~~~---~~~~~s~~~-d-----~~v~  131 (380)
                      ....++|.|+|++++ +..++.|++++  +++...  .+.   ........++|+|+   +..+..+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            457899999998554 46679999998  443221  111   12345789999998   444444332 2     5676


Q ss_pred             EEeCCCcc---eEEE---ee--CCCcCcEEEEEEccCCCCCEEEEEeC-------------CCeEEEEeCCC--------
Q psy6984         132 LWNTLAHC---KFTI---VE--DGHSDWVSCVRFSPNHQNPIIVSAGW-------------DRMVKVWNLTN--------  182 (380)
Q Consensus       132 iwd~~~~~---~~~~---~~--~~~~~~v~~~~~~~~~~~~~l~s~~~-------------d~~v~iwd~~~--------  182 (380)
                      .++.....   ....   +.  .........++|.|++.  ++++.+.             .+.|.-++...        
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            77654321   1111   11  11111235789999762  4444332             14565555543        


Q ss_pred             -----ceeeEeeeCCccceEEEEEcC-CCCEEEEE
Q psy6984         183 -----CKLKINHSGHTGYLNTVTVSP-DGSLCASG  211 (380)
Q Consensus       183 -----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  211 (380)
                           ........++ .....++|+| +|+++++-
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence                 0111222233 2367789999 66665553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.18  E-value=0.16  Score=47.62  Aligned_cols=207  Identities=10%  Similarity=0.014  Sum_probs=118.2

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE-EeCCCcEEEEECCC
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS-GSWDKTLRLWDLAA   95 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd~~~   95 (380)
                      +.+..|++++..+.++.+=...+.|..+++.....    ....+..-......+++.+.++.|+. -...+.|.+.++..
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~----~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC
Confidence            34667888876433444434467777777653211    01111222235788999986655554 45568999999876


Q ss_pred             CceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984          96 GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus        96 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ......+.........|+++|.+..|..+..  .+.|...++.......... ..-.+...+++.+.... ++++-...+
T Consensus       116 ~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~~~~-LY~aD~~~~  193 (619)
T 3s94_A          116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYEEQK-LYWADAKLN  193 (619)
T ss_dssp             CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTE-EEEEETTTC
T ss_pred             CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEccCCE-EEEEeCCCC
Confidence            4433323233455778999997665554443  3556655655443333332 23446788999986543 444555567


Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT  230 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  230 (380)
                      .|...|+..........+.......+++.++ ..+++-...+.|...|..+++....
T Consensus       194 ~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          194 FIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             CEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             eEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence            8988888764433322222333456777766 5666666778899999877764433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.08  E-value=0.036  Score=43.72  Aligned_cols=142  Identities=11%  Similarity=-0.028  Sum_probs=78.7

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCC--------eEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKD--------VLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      .+..++|+|+|.+.+.  .+|.++-.+..++....-+.. ...        ..++.|.|+|.+.++  .||.|.-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5779999999986666  677777777654222111110 111        478899999988877  568887776533


Q ss_pred             cceE------EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce-------eeEeeeCCccceEEEEEcCC
Q psy6984         138 HCKF------TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-------LKINHSGHTGYLNTVTVSPD  204 (380)
Q Consensus       138 ~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------~~~~~~~~~~~i~~~~~~~~  204 (380)
                      ....      ..+...--..+..|.+.|++.   |.... |+.+.-.......       ....-.+.-..-.-+.|.|+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCce---EEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            2111      112111123478899999763   55555 7775433322111       00001111222334567888


Q ss_pred             CCEEEEEcCCCcEE
Q psy6984         205 GSLCASGGKDMNAM  218 (380)
Q Consensus       205 ~~~l~~~~~d~~i~  218 (380)
                      +.+.++.  ++.++
T Consensus       193 G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          193 GTLFGVQ--GGKFY  204 (236)
T ss_dssp             SCEEEEE--TTEEE
T ss_pred             CcEEEEe--CCeEE
Confidence            8777666  66443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.96  E-value=0.099  Score=44.61  Aligned_cols=172  Identities=13%  Similarity=0.189  Sum_probs=97.4

Q ss_pred             EEeEEecCcccceEEEEeCCCC---CC---e-EEEeeC--CCeEEEeecCCCCCCcccccc---cccCCCcceEEEEE--
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKF---PD---T-ILSCSR--DNTLIIWKLTRDDTNYGVPQK---RLKGHSHFISDIVL--   72 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~---~~---~-l~t~~~--dg~v~vw~~~~~~~~~~~~~~---~~~~h~~~v~~~~~--   72 (380)
                      ++.+.+..  +.++.+..-|..   ++   + +++.-.  +++|.+|+++...........   .+..-...+..+++  
T Consensus        60 ~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~  137 (355)
T 3amr_A           60 KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYH  137 (355)
T ss_dssp             CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEE
T ss_pred             cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEe
Confidence            34445543  567776655421   11   2 333333  589999987543221110000   00011144566776  


Q ss_pred             ccC-CC-EEEEEeCCCcEEEEECC---C----CceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----c
Q psy6984          73 SSD-GN-YALSGSWDKTLRLWDLA---A----GKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA-----H  138 (380)
Q Consensus        73 ~~~-~~-~l~s~~~d~~i~vwd~~---~----~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~-----~  138 (380)
                      +|. ++ ++++...+|.+..|++.   .    .+.++++.. ...+-.+...+....|+.+-.+.-|-.++...     .
T Consensus       138 ~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~  216 (355)
T 3amr_A          138 SQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNG  216 (355)
T ss_dssp             CTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCC
T ss_pred             cCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCc
Confidence            664 44 68888999999999883   2    244555543 35677888899888999999986654445321     1


Q ss_pred             ceEEEeeCCC-cCcEEEEEEcc--CCCCCEEEEEeCCCeEEEEeCC
Q psy6984         139 CKFTIVEDGH-SDWVSCVRFSP--NHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       139 ~~~~~~~~~~-~~~v~~~~~~~--~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                      ........++ ...+..+++.+  +++..+++++-.+.+..+||..
T Consensus       217 ~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          217 TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            1222222222 23588888853  3333345555567899999985

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.89  E-value=0.29  Score=45.87  Aligned_cols=183  Identities=11%  Similarity=0.006  Sum_probs=112.9

Q ss_pred             CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeeeecccCCCeEEEEEe
Q psy6984          37 RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS  115 (380)
Q Consensus        37 ~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  115 (380)
                      ....|+.-++........++   +.+ -..+..++|++....|+.+ ..++.|..+++........+..-......++++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~---~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD   88 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIP---LTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD   88 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECC---CCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEE
T ss_pred             eCCcEEEEECCCCCcceEEE---cCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEE
Confidence            45688888886533211111   112 2346789999876666654 456889999987654443333223456788998


Q ss_pred             CCCCEE-EEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeeeCCc
Q psy6984         116 VDNRQI-VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHSGHT  193 (380)
Q Consensus       116 ~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~  193 (380)
                      +.+..| ++-...+.|.+.++.......... ..-.....+++.|.... ++.+- +..+.|...++.......... ..
T Consensus        89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~  165 (628)
T 4a0p_A           89 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVP-NV  165 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEEC-SC
T ss_pred             eCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEEC-CC
Confidence            766655 455566788888876544433332 23345688999985432 33332 235678888876544333232 34


Q ss_pred             cceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCc
Q psy6984         194 GYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       194 ~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~  226 (380)
                      ...+.++++++++. +++=...+.|..+|+....
T Consensus       166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN  199 (628)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence            57889999997554 4555667889999986543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.88  E-value=0.18  Score=43.44  Aligned_cols=103  Identities=10%  Similarity=0.022  Sum_probs=58.2

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc-cccccCCCcceEEEEEccC---CCEEEEEeC-C-----Cc
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP-QKRLKGHSHFISDIVLSSD---GNYALSGSW-D-----KT   87 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~---~~~l~s~~~-d-----~~   87 (380)
                      ....|++.|+ +.+ +.+..+|.|++++ ...  ...+. .............++++|+   +..|+.+.. .     ..
T Consensus        32 ~P~~ia~~pd-G~l-~V~e~~g~I~~i~-~g~--~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           32 VPWALAFLPD-GGM-LIAERPGRIRLFR-EGR--LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CEEEEEECTT-SCE-EEEETTTEEEEEE-TTE--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CceEEEEcCC-CeE-EEEeCCCeEEEEE-CCC--ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            4568999987 454 4456679998887 211  10000 0011222345789999998   555554443 2     57


Q ss_pred             EEEEECCCCce------eeeec---ccCCCeEEEEEeCCCCEEEEEe
Q psy6984          88 LRLWDLAAGKT------TRRFE---DHTKDVLSVAFSVDNRQIVSSS  125 (380)
Q Consensus        88 i~vwd~~~~~~------~~~~~---~h~~~v~~~~~~~~~~~~~s~~  125 (380)
                      |..++...++.      ...+.   ........++|.|||.+.++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88888765421      11122   1111235799999997666643

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.79  E-value=0.21  Score=42.61  Aligned_cols=270  Identities=11%  Similarity=0.040  Sum_probs=126.9

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec----ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE----DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~  141 (380)
                      .+.++.+.+++..++ ++.+|.| +.....++.-....    .....+.++.|.+ +..++ ++..+.|..- ...+...
T Consensus        37 ~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~S-~DgG~tW  111 (327)
T 2xbg_A           37 TILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLHT-TDGGQSW  111 (327)
T ss_dssp             CEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEEE-SSTTSSC
T ss_pred             cEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEEE-CCCCCCc
Confidence            588898887777777 4556765 33344444333322    1234688899976 44444 4455644432 2222222


Q ss_pred             EEeeC--CCcCcEEEEEEccCCCCCEEEEEeCCCeE-EEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEE
Q psy6984         142 TIVED--GHSDWVSCVRFSPNHQNPIIVSAGWDRMV-KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAM  218 (380)
Q Consensus       142 ~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~d~~v-~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  218 (380)
                      .....  .+...+..+.+.+++  .+++. +.++.| +-.|-.. .-.....+....+..+.+.|++++++.+...+..+
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~~~g~v~~S~DgG~-tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~  187 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNG--SAEMI-TNVGAIYRTKDSGK-NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYS  187 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETT--EEEEE-ETTCCEEEESSTTS-SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEE
T ss_pred             eECccccCCCCCeEEEEEECCC--CEEEE-eCCccEEEEcCCCC-CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence            22211  122346667765533  23444 445544 3333211 11111223455688899999998887775443333


Q ss_pred             EEEC--CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee-c---cccceeEEEEee
Q psy6984         219 LWDL--NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF-S---LFRDVLSVAFSV  292 (380)
Q Consensus       219 i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~s~  292 (380)
                      -.|-  .+-+.+. ......+..+.+.+++......       ..+.++......++--.... .   ....+.++++.+
T Consensus       188 S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-------~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~  259 (327)
T 2xbg_A          188 TWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-------NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT  259 (327)
T ss_dssp             EECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEE-------TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred             EeCCCCCceeECC-CCCCCccceeEECCCCCEEEEe-------CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence            3332  1112221 1223455666666655332111       11222221111121111111 1   123477888888


Q ss_pred             cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         293 DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       293 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ++..++.+ .+|.|. +....+.        +-..   ...      ....+..+..+.|.++++ +++++.+|.|.-++
T Consensus       260 ~~~~~~~g-~~g~i~-~S~DgG~--------tW~~---~~~------~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          260 PNEVWLAG-GAGALL-CSQDGGQ--------TWQQ---DVD------VKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             SSCEEEEE-STTCEE-EESSTTS--------SCEE---CGG------GTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCEEEEEe-CCCeEE-EeCCCCc--------ccEE---cCc------cCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            87776665 467663 3221111        1100   000      000122356788876666 44566789776554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.62  E-value=0.21  Score=43.70  Aligned_cols=135  Identities=13%  Similarity=0.140  Sum_probs=83.3

Q ss_pred             CeEEEeecCCCCCCcccccccccCC--CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce------------eeeecc
Q psy6984          39 NTLIIWKLTRDDTNYGVPQKRLKGH--SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT------------TRRFED  104 (380)
Q Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~------------~~~~~~  104 (380)
                      +.||.-++.... .|...  .+..|  -..|..+..+|+|++||..+. ..|.|-.+..+..            .+.+.-
T Consensus        41 n~iR~~~i~~~~-~Yk~L--~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l  116 (452)
T 3pbp_A           41 NIIRWYNVLTDS-LYHSL--NFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI  116 (452)
T ss_dssp             TEEEEEETTTCS-SCEEE--ECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred             CEEEEEECCCCC-cceEE--ecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEc
Confidence            577766665322 34321  11111  114678999999999999875 4899988863310            112221


Q ss_pred             ------cCCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCcce-EEEe--------eCCCcCcEEEEEEccCCCCCEE
Q psy6984         105 ------HTKDVLSVAFSVD---NRQIVSSSRDKTIKLWNTLAHCK-FTIV--------EDGHSDWVSCVRFSPNHQNPII  166 (380)
Q Consensus       105 ------h~~~v~~~~~~~~---~~~~~s~~~d~~v~iwd~~~~~~-~~~~--------~~~~~~~v~~~~~~~~~~~~~l  166 (380)
                            ...+|..+.|+|-   +..+++-..|+.|++||+..... ...+        .......|.+++|.+++-..++
T Consensus       117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence                  2467999999984   56899999999999999764211 1111        1223356889999886544444


Q ss_pred             EEEeCCCeEEE
Q psy6984         167 VSAGWDRMVKV  177 (380)
Q Consensus       167 ~s~~~d~~v~i  177 (380)
                      ++...+|.|.-
T Consensus       197 l~~t~~GDIYA  207 (452)
T 3pbp_A          197 LNTTEGGDIFA  207 (452)
T ss_dssp             EECTTSCEEEE
T ss_pred             EecCCCCCEEE
Confidence            44556677754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.55  E-value=0.27  Score=41.06  Aligned_cols=146  Identities=13%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             CCCEEEEEe-CC-----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcc--
Q psy6984          75 DGNYALSGS-WD-----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHC--  139 (380)
Q Consensus        75 ~~~~l~s~~-~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~--  139 (380)
                      ++..++.|+ .+     ..+.+||..+++-...  +...... .+++ ..++..++.|+.+     ..+.+||..+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            344555555 22     3688899877642221  1111111 1222 2356666777654     357888876543  


Q ss_pred             -eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEE
Q psy6984         140 -KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       140 -~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                       -...........-.+++.. +  +.+++.|+.+     ..+.+||+.+.+-....  +........+.+  ++++++.|
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G  166 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL-G--DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLG  166 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEEC
T ss_pred             eeEECCCCCCCccceeEEEE-C--CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEEC
Confidence             2211111111111122222 2  2355556543     35888898775433221  111111122222  67777787


Q ss_pred             cCC-----CcEEEEECCCCcE
Q psy6984         212 GKD-----MNAMLWDLNDGKH  227 (380)
Q Consensus       212 ~~d-----~~i~i~d~~~~~~  227 (380)
                      +.+     ..+.+||+.+.+-
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W  187 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHW  187 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEE
T ss_pred             CCCCCcccceEEEEeCCCCcE
Confidence            764     4688899877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.49  E-value=0.56  Score=43.89  Aligned_cols=201  Identities=6%  Similarity=-0.034  Sum_probs=112.6

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCC
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAG   96 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~   96 (380)
                      .+..|++.+..+.++++-...+.|+.++++.....     ......-.....+++...+..| .+-+..+.|.+.++...
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~-----~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ-----FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE-----EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            35567777753334444445677777776532111     1111222346688898655544 45456688999998754


Q ss_pred             ceeeeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984          97 KTTRRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus        97 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      .....+...-....++++.|....|..+..  ...|...++......... ...-.+...|++.+.... ++++-+..+.
T Consensus       425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~l~~P~GlalD~~~~~-LY~aD~~~~~  502 (619)
T 3s94_A          425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-NTSLGWPNGLALDYDEGK-IYWGDAKTDK  502 (619)
T ss_dssp             SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSCEEEEEEETTTTE-EEEEETTTTE
T ss_pred             eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-eCCCCCCeeeEEcccCCE-EEEEECCCCE
Confidence            332222233456789999997444444332  356666655544333333 233456788999875443 4444455678


Q ss_pred             EEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         175 VKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       175 v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      |..+++...............+..+++..+ .++++-...+.|...|..++.
T Consensus       503 I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          503 IEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             EEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            988988654433222222233445665543 455555566677777777664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.35  E-value=0.56  Score=42.29  Aligned_cols=159  Identities=8%  Similarity=0.039  Sum_probs=89.0

Q ss_pred             ceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEE-------ccCCCEEEEEeCCC---
Q psy6984          18 WVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVL-------SSDGNYALSGSWDK---   86 (380)
Q Consensus        18 ~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~l~s~~~d~---   86 (380)
                      ....|++.|. .+.++++-...+.|++.|+...... .+ .............++|       ++++++|+.+...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            3567888873 3334444443456666665432111 11 1111112335789999       99999777766554   


Q ss_pred             ----cEEEEECCC-Ccee-----eeecccCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCC-------Ccce--------
Q psy6984          87 ----TLRLWDLAA-GKTT-----RRFEDHTKDVLSVAFSVD-NRQIVSSSRDKTIKLWNTL-------AHCK--------  140 (380)
Q Consensus        87 ----~i~vwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~-~~~~~s~~~d~~v~iwd~~-------~~~~--------  140 (380)
                          .|.+.+... ++..     ..+.. ......++++|+ +.++++-..++.|..+|..       ++..        
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                266666443 2221     22221 123457788994 5556667788889999975       2221        


Q ss_pred             ---E-EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeC
Q psy6984         141 ---F-TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL  180 (380)
Q Consensus       141 ---~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~  180 (380)
                         . .....+...+-..++++|++.. ++++-.....|+.++.
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~-lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKY-AYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSE-EEEEETTTTEEEEEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCE-EEEEeCCCCEEEEEec
Confidence               1 1222233345678999998652 3455556778888654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.24  E-value=0.43  Score=39.91  Aligned_cols=144  Identities=10%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             CEEEEEeCC----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcceEEEee
Q psy6984          77 NYALSGSWD----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        77 ~~l~s~~~d----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~~~~~~  145 (380)
                      ..++.|+.+    ..+..||+.+++-...  +...... .+++ ..++..++.|+.+     ..+.+||..+..-.....
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccccc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            344455533    3578888877642221  1111111 1122 2256666676644     357778865543222211


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCCC-----eEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcCC----
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWDR-----MVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGKD----  214 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d----  214 (380)
                      ......-.+++.. +  +.+++.|+.++     .+.+||+.+.+-...  .+........+.  -++++++.|+.+    
T Consensus        95 ~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           95 MRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASR  169 (302)
T ss_dssp             CSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTT
T ss_pred             CCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCC
Confidence            1111111122222 2  23555666543     477888876543221  111111112222  256677777653    


Q ss_pred             ---CcEEEEECCCCcE
Q psy6984         215 ---MNAMLWDLNDGKH  227 (380)
Q Consensus       215 ---~~i~i~d~~~~~~  227 (380)
                         ..+.+||+.+.+-
T Consensus       170 ~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          170 QCLSTVECYNATTNEW  185 (302)
T ss_dssp             EECCCEEEEETTTTEE
T ss_pred             ccccEEEEEeCCCCcE
Confidence               3588899877653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.22  E-value=0.51  Score=40.65  Aligned_cols=116  Identities=15%  Similarity=0.133  Sum_probs=61.6

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE-----eeCCCcCcEEEEEEccC---CCCCEEEEEeC-------
Q psy6984         107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI-----VEDGHSDWVSCVRFSPN---HQNPIIVSAGW-------  171 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~---~~~~~l~s~~~-------  171 (380)
                      .....++|.|+|+.++.+...+.|++++.........     ...........++++|+   ... ++++-..       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence            3567899999998344555678898887432111000     00111234678999985   222 3333222       


Q ss_pred             CCeEEEEeCCCc--e---e--eE-eee---CCccceEEEEEcCCCCEEEEEcC-------------CCcEEEEECC
Q psy6984         172 DRMVKVWNLTNC--K---L--KI-NHS---GHTGYLNTVTVSPDGSLCASGGK-------------DMNAMLWDLN  223 (380)
Q Consensus       172 d~~v~iwd~~~~--~---~--~~-~~~---~~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~  223 (380)
                      ...|..|++...  .   .  +. ...   ........+.|.|||.++++.+.             .+.|.-++..
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence            235666665432  1   1  11 111   11112457999999976666543             2467777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.93  E-value=0.6  Score=38.91  Aligned_cols=144  Identities=13%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcceEE
Q psy6984          75 DGNYALSGSWD-----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFT  142 (380)
Q Consensus        75 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~~~  142 (380)
                      +++.++.|+.+     ..+.+||+.+++-...  +....... +++. .++..++.|+.+     ..+.+||..+..-..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            56677777654     3688999877643321  11111111 1222 256666776654     357788865543222


Q ss_pred             EeeCCCcC-cEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         143 IVEDGHSD-WVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       143 ~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      ........ ...++.+  +  +.+++.|+.+     ..+.+||+.+.+-....  +........+.+  ++++++.|+.+
T Consensus       190 ~~~~p~~r~~~~~~~~--~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL--N--DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYD  263 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--T--TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCCCCcccccceEEEE--C--CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcC
Confidence            21111111 1122222  1  2355666654     46889999876533221  111111122222  56677777765


Q ss_pred             -----CcEEEEECCCCc
Q psy6984         215 -----MNAMLWDLNDGK  226 (380)
Q Consensus       215 -----~~i~i~d~~~~~  226 (380)
                           ..+.+||+.+.+
T Consensus       264 ~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          264 GNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SSSBEEEEEEEETTTTE
T ss_pred             CCcccccEEEEcCCCCe
Confidence                 346667766543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.87  E-value=0.76  Score=39.57  Aligned_cols=141  Identities=14%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCc-eeeeec---ccCCCeEEEEEeCC---CCEEEEEeC----C----CcE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-TTRRFE---DHTKDVLSVAFSVD---NRQIVSSSR----D----KTI  130 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~---~h~~~v~~~~~~~~---~~~~~s~~~----d----~~v  130 (380)
                      ....++|.|+|+ |+.+..++.|++++ .+++ .+..+.   ........++++|+   +..|..+..    +    ..|
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            457899999997 55556679999997 3454 111111   11245789999997   444443332    2    456


Q ss_pred             EEEeCCCc-----ceEEE---eeCCCcCcEEEEEEccCCCCCEEEEEeC-------------CCeEEEEeCCCc------
Q psy6984         131 KLWNTLAH-----CKFTI---VEDGHSDWVSCVRFSPNHQNPIIVSAGW-------------DRMVKVWNLTNC------  183 (380)
Q Consensus       131 ~iwd~~~~-----~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~-------------d~~v~iwd~~~~------  183 (380)
                      ..|+....     .....   +..........++|.|++.  ++++.+.             .+.|.-++....      
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            66664332     01111   1111111235689999763  4554332             245555554322      


Q ss_pred             --eeeEeeeCCccceEEEEEcC-CCCEEEEE
Q psy6984         184 --KLKINHSGHTGYLNTVTVSP-DGSLCASG  211 (380)
Q Consensus       184 --~~~~~~~~~~~~i~~~~~~~-~~~~l~~~  211 (380)
                        .......++. ....++|+| +|+++++-
T Consensus       186 f~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          186 FPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             STTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence              1122223333 356799999 67766554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.59  E-value=1.1  Score=39.33  Aligned_cols=151  Identities=11%  Similarity=0.077  Sum_probs=93.6

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCceeeeeccc----CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc-------
Q psy6984          71 VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDH----TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC-------  139 (380)
Q Consensus        71 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~-------  139 (380)
                      ....+|..++.+-. +.||.-++.++..-+.+..-    -..|..+..+|+|+++|..+.. .|.+-.+....       
T Consensus        27 ~~~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           27 FSSQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EEETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHH
T ss_pred             EEEcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccc
Confidence            34456666666553 57877777754433333221    2357889999999999887554 67777665211       


Q ss_pred             -----eEEEeeCC-----CcCcEEEEEEccCCC-CCEEEEEeCCCeEEEEeCCCce--ee--------EeeeCCccceEE
Q psy6984         140 -----KFTIVEDG-----HSDWVSCVRFSPNHQ-NPIIVSAGWDRMVKVWNLTNCK--LK--------INHSGHTGYLNT  198 (380)
Q Consensus       140 -----~~~~~~~~-----~~~~v~~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~--~~--------~~~~~~~~~i~~  198 (380)
                           ......-+     ....|..+.|+|-+. ...|++-..|+.||+||+....  ..        .........|.+
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence                 01111111     245699999999763 3578888899999999997511  11        111122356888


Q ss_pred             EEEcCCCCEEEE--EcCCCcEEEEECC
Q psy6984         199 VTVSPDGSLCAS--GGKDMNAMLWDLN  223 (380)
Q Consensus       199 ~~~~~~~~~l~~--~~~d~~i~i~d~~  223 (380)
                      ++|.+++-.|..  .+..|.|+-.-.-
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYAlcP~  211 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFAFYPF  211 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEEESSC
T ss_pred             EEEcCCCcEEEEEecCCCCCEEEECCC
Confidence            999987766555  4477877765443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.19  E-value=1.3  Score=37.95  Aligned_cols=154  Identities=11%  Similarity=0.125  Sum_probs=87.1

Q ss_pred             ceEEEEEccCCCEEEEEe------------CCCcEEEEECCCCc-eeeee--cc-----cCCCeEEEEEeC--CCC--EE
Q psy6984          66 FISDIVLSSDGNYALSGS------------WDKTLRLWDLAAGK-TTRRF--ED-----HTKDVLSVAFSV--DNR--QI  121 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~------------~d~~i~vwd~~~~~-~~~~~--~~-----h~~~v~~~~~~~--~~~--~~  121 (380)
                      ...++.+.|+|..+++++            .+|.|.++|.++.. ...++  .+     ..-....+.+.+  ++.  ++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            456777888875544442            68999999987421 12222  21     123466777765  454  33


Q ss_pred             EEEeC--CCcEEEEeCCCc-ceEEE---eeCCCcCcEEEEEEccCCCCCEEEEEe-----------------CCCeEEEE
Q psy6984         122 VSSSR--DKTIKLWNTLAH-CKFTI---VEDGHSDWVSCVRFSPNHQNPIIVSAG-----------------WDRMVKVW  178 (380)
Q Consensus       122 ~s~~~--d~~v~iwd~~~~-~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~-----------------~d~~v~iw  178 (380)
                      ++-..  +..+.+|+.... .....   .....-...+.+++.+++.  ++++..                 ..+.|..+
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            33333  467778775432 22211   2222234578888888654  444433                 12455555


Q ss_pred             eCCCceeeEeeeCCccceEEEEEcCCCCEEEEE-cCCCcEEEEECCC
Q psy6984         179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASG-GKDMNAMLWDLND  224 (380)
Q Consensus       179 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~  224 (380)
                      |..  +... ....-...+.++|+||++.+..+ +..+.|+.|++..
T Consensus       209 d~~--~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          209 SPN--DVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             CTT--CCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ECC--eEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            553  2222 12223467999999999876554 5678999999863

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.17  E-value=1.7  Score=38.92  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=37.5

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--eecc------cCCCeEEEEEeCC---CCEEEE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR--RFED------HTKDVLSVAFSVD---NRQIVS  123 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~------h~~~v~~~~~~~~---~~~~~s  123 (380)
                      ....++|.|+|+++++-...+.|++++..+++...  .+..      .......|+|+|+   +..|..
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            45789999999877765544579988866554332  2211      2345779999995   444443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.02  E-value=1.3  Score=36.93  Aligned_cols=142  Identities=11%  Similarity=0.074  Sum_probs=68.7

Q ss_pred             EEEEEeC--CCcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCcceEEEeeCCCc
Q psy6984          78 YALSGSW--DKTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHCKFTIVEDGHS  149 (380)
Q Consensus        78 ~l~s~~~--d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d----~~v~iwd~~~~~~~~~~~~~~~  149 (380)
                      .++.|+.  ...+.+||..+++-...  +.........+.  .++..++.|+.+    ..+.+||..+..-.........
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4455554  35788999887643221  111111111222  356666777654    5677788665432222111111


Q ss_pred             CcEEEEEEccCCCCCEEEEEeCC------CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcC--------
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAGWD------RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGK--------  213 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~--------  213 (380)
                      ..-.+++.. +  +.+++.|+.+      ..+.+||..+.+-...  .+........+.  -++++++.|+.        
T Consensus        92 r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           92 RDSLAACAA-E--GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             CBSCEEEEE-T--TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCE
T ss_pred             ccceeEEEE-C--CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCccc
Confidence            111122222 2  2355666654      4588899877543221  111111112222  25677777764        


Q ss_pred             -CCcEEEEECCCCc
Q psy6984         214 -DMNAMLWDLNDGK  226 (380)
Q Consensus       214 -d~~i~i~d~~~~~  226 (380)
                       -..+.+||+.+.+
T Consensus       167 ~~~~~~~yd~~~~~  180 (306)
T 3ii7_A          167 VLNSCEVYDPATET  180 (306)
T ss_dssp             ECCCEEEEETTTTE
T ss_pred             ccceEEEeCCCCCe
Confidence             3458889988765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.67  E-value=1.6  Score=36.29  Aligned_cols=145  Identities=17%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-------CcEEEEeCCCcce
Q psy6984          75 DGNYALSGSWDK-----TLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-------KTIKLWNTLAHCK  140 (380)
Q Consensus        75 ~~~~l~s~~~d~-----~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-------~~v~iwd~~~~~~  140 (380)
                      +++.++.|+.++     .+.+||+.+++-...  +...... .+++. .++..++.|+.+       ..+.+||..+..-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            567777777653     577899877643322  1111111 12222 256666666532       3477888655432


Q ss_pred             EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEEcC
Q psy6984         141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      ...........-.+++.. +  +.+++.|+.+     ..+.+||+.+.+-....  +........+.  -++++++.|+.
T Consensus       186 ~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~  260 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL-N--NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGD  260 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE-T--TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred             EECCCCccccccccEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCc
Confidence            222111111111122222 1  2355666654     36888998775432211  11111111222  25677777776


Q ss_pred             CC-----cEEEEECCCCc
Q psy6984         214 DM-----NAMLWDLNDGK  226 (380)
Q Consensus       214 d~-----~i~i~d~~~~~  226 (380)
                      ++     .+.+||+.+.+
T Consensus       261 ~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CSSSBCCCEEEEETTTTE
T ss_pred             CCCcccccEEEEcCCCCe
Confidence            53     46777776553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.39  E-value=1.5  Score=34.69  Aligned_cols=105  Identities=10%  Similarity=0.033  Sum_probs=61.1

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCc--cccc-ccc--cCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNY--GVPQ-KRL--KGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~--~~~~-~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      ..+++++++|+ +.+.+.  .+|.  +|..+......  .... ..+  .+.. ...++.|.|+|.+.++  .||.|+-+
T Consensus        41 ~~~~~laf~P~-G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           41 SNFKFLFLSPG-GELYGV--LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TTCSEEEECTT-SCEEEE--ETTE--EEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             ccceeEEECCC-ccEEEE--eCCe--EEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEe
Confidence            36779999995 555554  5675  55544321110  0000 111  0111 1478999999987777  56999888


Q ss_pred             ECCCCcee------eee-cccCCCeEEEEEeCCCCEEEEEeCCCcEE
Q psy6984          92 DLAAGKTT------RRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIK  131 (380)
Q Consensus        92 d~~~~~~~------~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~  131 (380)
                      +..+....      .++ ..--..+..|.|.|+|.+.+..  |+.+.
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            76332111      111 1122568999999999988777  66653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.35  E-value=2.2  Score=36.58  Aligned_cols=51  Identities=16%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-------ccCCCeEEEEEeCC
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-------DHTKDVLSVAFSVD  117 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~  117 (380)
                      ....++|.|+|++|+.+...|.|++++.. ++....+.       ........++++|+
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCC
Confidence            35789999999844455667999999853 33221111       11235688999996

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.21  E-value=2.1  Score=35.67  Aligned_cols=145  Identities=9%  Similarity=0.081  Sum_probs=70.8

Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeC---------CCcEEEEeCCC
Q psy6984          75 DGNYALSGSWD------KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSR---------DKTIKLWNTLA  137 (380)
Q Consensus        75 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~---------d~~v~iwd~~~  137 (380)
                      +++.++.|+.+      ..+.+||..+++-...  +....... +++. .++..++.|+.         -..+.+||..+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            66777777765      4688999887643222  11111111 1222 35666666653         34577888765


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEE
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~  210 (380)
                      ..-...........-.+++.. +  +.+++.|+.+     ..+.+||+.+.+-...  .+........+.+  ++++++.
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~-~--~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~  253 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV-K--DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL  253 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred             CeEEECCCccchhhcceEEEE-C--CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence            432222111111111122222 2  2255555543     3578899877543221  1111112222223  6677888


Q ss_pred             EcCC-----CcEEEEECCCCc
Q psy6984         211 GGKD-----MNAMLWDLNDGK  226 (380)
Q Consensus       211 ~~~d-----~~i~i~d~~~~~  226 (380)
                      |+.+     ..+.+||+.+.+
T Consensus       254 GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          254 AGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             ECBCSSSBCCEEEEEETTTTE
T ss_pred             eCcCCCeeeeeEEEEcCCCCe
Confidence            8754     456777776654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.02  E-value=2.3  Score=35.50  Aligned_cols=144  Identities=12%  Similarity=0.111  Sum_probs=68.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCcceEE
Q psy6984          75 DGNYALSGSWD-----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD-----KTIKLWNTLAHCKFT  142 (380)
Q Consensus        75 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d-----~~v~iwd~~~~~~~~  142 (380)
                      +++.++.|+.+     ..+.+||..+++-...  +.........+.+  ++..++.|+.+     ..+.+||..+..-..
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            56677777643     3688999877643221  1111111122222  56666666654     457788865432211


Q ss_pred             EeeCCCcC-cEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcCC
Q psy6984         143 IVEDGHSD-WVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGKD  214 (380)
Q Consensus       143 ~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d  214 (380)
                      ........ ...++.+  +  +.+++.|+.+     ..+.+||+.+.+-...  .+........+.+  ++++++.|+.+
T Consensus       199 ~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  272 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL--H--NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYD  272 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--T--TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCCCCCccccceEEEE--C--CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcC
Confidence            11101111 1122222  2  2355666654     4688999877543321  1111111122222  56777777754


Q ss_pred             -----CcEEEEECCCCc
Q psy6984         215 -----MNAMLWDLNDGK  226 (380)
Q Consensus       215 -----~~i~i~d~~~~~  226 (380)
                           ..+.+||+.+.+
T Consensus       273 ~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          273 GHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SSCBCCEEEEEETTTTE
T ss_pred             CCcccceEEEEcCCCCE
Confidence                 346667766543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.78  E-value=2.9  Score=35.86  Aligned_cols=181  Identities=12%  Similarity=0.188  Sum_probs=97.1

Q ss_pred             CCCeEEEeecCCCCCC-ccccccc--ccCCCcceEEEEEcc--CCC-EEEEE-eC--CCcEEEEECCCC-ce---eeeec
Q psy6984          37 RDNTLIIWKLTRDDTN-YGVPQKR--LKGHSHFISDIVLSS--DGN-YALSG-SW--DKTLRLWDLAAG-KT---TRRFE  103 (380)
Q Consensus        37 ~dg~v~vw~~~~~~~~-~~~~~~~--~~~h~~~v~~~~~~~--~~~-~l~s~-~~--d~~i~vwd~~~~-~~---~~~~~  103 (380)
                      .+|.|.++|+...... ..+....  +.........+.+.+  +++ +|+.+ ..  +..|.+|++..+ ..   +..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999997632111 1111111  111122345666654  454 44444 33  467777776543 22   22233


Q ss_pred             cc-CCCeEEEEEeCCCCEEEEEe-----------------CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984         104 DH-TKDVLSVAFSVDNRQIVSSS-----------------RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus       104 ~h-~~~v~~~~~~~~~~~~~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      +. -....++++.++|.+.++..                 ..+.+..+|..  .. ..... .-...+.++|+|+++. +
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~-~l~~pNGia~spDg~~-l  235 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAE-GFDFANGINISPDGKY-V  235 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEE-EESSEEEEEECTTSSE-E
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeec-CCcccCcceECCCCCE-E
Confidence            22 23478899999998777654                 12345445432  11 11111 1234678999998753 4


Q ss_pred             EEEEeCCCeEEEEeCCC-ceee--EeeeCCccceEEEEEcC-CCCEEEEEcCC-CcEEEEECC
Q psy6984         166 IVSAGWDRMVKVWNLTN-CKLK--INHSGHTGYLNTVTVSP-DGSLCASGGKD-MNAMLWDLN  223 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~-~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-~~i~i~d~~  223 (380)
                      +++-+..+.|..|++.. +++.  ..+ ...+....+++++ +|++.+++..+ ++|..|+..
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            45556678999999863 2221  112 1245678889999 58877766533 455545443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.75  E-value=3  Score=35.83  Aligned_cols=102  Identities=17%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee----CCCcCcEEEEEEccC---CCCCEEEEEeC---C----
Q psy6984         107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE----DGHSDWVSCVRFSPN---HQNPIIVSAGW---D----  172 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~~~l~s~~~---d----  172 (380)
                      .....++|.|+|+.+ .+..++.|++++.. +. .....    .........++++|+   ... ++++-..   +    
T Consensus        29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYL-VTERPGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSW-VYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEEEETTEEE-EEETTTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEEECGGGCEE
T ss_pred             CCCeEEEEcCCCeEE-EEeCCCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCE-EEEEEeccCCCCCcc
Confidence            456789999999744 45566899888733 22 11111    112245788999986   222 3333221   3    


Q ss_pred             CeEEEEeCCCc-------eeeE-eeeC-CccceEEEEEcCCCCEEEEEc
Q psy6984         173 RMVKVWNLTNC-------KLKI-NHSG-HTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       173 ~~v~iwd~~~~-------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      ..|..|+....       +... .... .......++|.|+|.++++.+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            56777776543       1111 1221 112346799999998777643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.67  E-value=3  Score=35.64  Aligned_cols=143  Identities=15%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee--e----cccCCCeEEEEEeCC----CCEEEEEe--CCCcEEEE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR--F----EDHTKDVLSVAFSVD----NRQIVSSS--RDKTIKLW  133 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~----~~h~~~v~~~~~~~~----~~~~~s~~--~d~~v~iw  133 (380)
                      ..+.++|.|||+++++--..|.|++++..+++....  +    .........++++|+    +.+.++-+  .++.|.-|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            457899999999777766589999998765554221  1    122345789999995    43333322  34445545


Q ss_pred             eCCCc--------ceEEE---eeCCCcCcEEEEEEccCCCCCEEEEEeC-------------CCeEEEEeCCCc------
Q psy6984         134 NTLAH--------CKFTI---VEDGHSDWVSCVRFSPNHQNPIIVSAGW-------------DRMVKVWNLTNC------  183 (380)
Q Consensus       134 d~~~~--------~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~-------------d~~v~iwd~~~~------  183 (380)
                      .....        ....+   +.....-....++|.|++.  ++++.+.             .+.|.-.+....      
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            43321        11111   1111111235689998763  5555432             244444444321      


Q ss_pred             --eeeEeeeCCccceEEEEEcCCCCEEEEE
Q psy6984         184 --KLKINHSGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       184 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                        .......+|. ....++|+|+|+++++-
T Consensus       191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d  219 (347)
T 3das_A          191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             STTCCEEEBCCS-BCCEEEECTTCCEEEEE
T ss_pred             CCCCeEEeeCCC-CcceEEECCCCCEEEEe
Confidence              1122233443 45778999988776653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.58  E-value=7  Score=39.56  Aligned_cols=113  Identities=8%  Similarity=-0.005  Sum_probs=68.3

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-cccCCCeEEEEEeCC------CCEEEEEeC-CCcEEEEeCCC
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVD------NRQIVSSSR-DKTIKLWNTLA  137 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~------~~~~~s~~~-d~~v~iwd~~~  137 (380)
                      .|...+.+  +.+++.++ ++.+.++++.+++..... ..-..+|.|+++.|.      +.+++.|.. |++++|+++..
T Consensus       515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            35555544  34666665 678888887665432211 123467999999763      368999996 99999999865


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCC
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT  181 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~  181 (380)
                      -........+......++.+..-+...+|..|-.||.+..+.+.
T Consensus       592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            33332222222223445544432334578888889987655543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.35  E-value=3.1  Score=34.73  Aligned_cols=143  Identities=13%  Similarity=0.100  Sum_probs=67.4

Q ss_pred             CCCEEEEEeCC----CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeC----C-----CcEEEEeCCCcc
Q psy6984          75 DGNYALSGSWD----KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSR----D-----KTIKLWNTLAHC  139 (380)
Q Consensus        75 ~~~~l~s~~~d----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~----d-----~~v~iwd~~~~~  139 (380)
                      ++..++.|+.+    ..+.+||..+++-...  +...... .+++. .++..++.|+.    +     ..+.+||..+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45566666632    3688888876543221  1111111 12222 25666666654    2     356777765543


Q ss_pred             eEEEee--CCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEE
Q psy6984         140 KFTIVE--DGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCAS  210 (380)
Q Consensus       140 ~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~  210 (380)
                      -.....  ..... ...+.+  +  +.+++.|+.+     ..+.+||+.+.+-...  .+........+.+  ++++++.
T Consensus       102 W~~~~~~p~~r~~-~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  174 (308)
T 1zgk_A          102 WSPCAPMSVPRNR-IGVGVI--D--GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV  174 (308)
T ss_dssp             EEECCCCSSCCBT-CEEEEE--T--TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             EeECCCCCcCccc-cEEEEE--C--CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE
Confidence            211111  11111 112222  2  2245555433     3578888876543221  1111111222222  6677777


Q ss_pred             EcCC-----CcEEEEECCCCc
Q psy6984         211 GGKD-----MNAMLWDLNDGK  226 (380)
Q Consensus       211 ~~~d-----~~i~i~d~~~~~  226 (380)
                      |+.+     ..+.+||+.+.+
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~  195 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNE  195 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTE
T ss_pred             eCCCCCCcCceEEEEeCCCCe
Confidence            7764     468888987764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.92  E-value=5.4  Score=36.40  Aligned_cols=88  Identities=11%  Similarity=0.110  Sum_probs=49.3

Q ss_pred             ccccceeEEEEeecCCEEEEee-CCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCE
Q psy6984         280 SLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQT  358 (380)
Q Consensus       280 ~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  358 (380)
                      ........+.++|||++++.++ .+.+|.++++.+-...  +   ..+.   +.+.........-...-+..+|.++|.-
T Consensus       320 P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~--~---~~k~---~~~~~~~~ae~e~GlGPlHt~Fd~~G~a  391 (638)
T 3sbq_A          320 PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDL--F---AGKL---ADPRDVIVGEPELGLGPLHTTFDGRGNA  391 (638)
T ss_dssp             EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--H---TTCC---SCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred             eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhh--h---hccc---cCcccceEeeccCCCcccEEEECCCCce
Confidence            3344556789999999977655 4789999886431110  0   0000   0000000000111223457889999943


Q ss_pred             EEEEeeCCeEEEEEeee
Q psy6984         359 LFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       359 l~~g~~dg~v~iw~~~~  375 (380)
                      ..+-.-|..|..|++..
T Consensus       392 YTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          392 YTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEETTTTEEEEEEHHH
T ss_pred             EeeeeecceEEEEeccH
Confidence            33444799999999864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.50  E-value=3.7  Score=42.04  Aligned_cols=128  Identities=6%  Similarity=0.120  Sum_probs=82.0

Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      ...|.+.|+.++......+   -.-.+..++|..+.+|.-. ...+.+||+++.+.+.....++.|.-..|-......  
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~--  120 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA--  120 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeE--
Confidence            3478888887754332211   1223456789888887765 679999999999988888888888888886554322  


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeecc-----ccceeEEEEeecCCEEEEee-------CCCcEEEEec
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSL-----FRDVLSVAFSVDNRQIVSSS-------RDKTIKLWNT  311 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~-------~dg~v~iw~~  311 (380)
                            -.....++.|++.........+..     ...|..-..+++.++++..|       -.|.+++|..
T Consensus       121 ------lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~  186 (1630)
T 1xi4_A          121 ------LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV  186 (1630)
T ss_pred             ------EEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeec
Confidence                  123466778887542222112221     23577778888888876433       2467888865

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.46  E-value=10  Score=38.41  Aligned_cols=174  Identities=11%  Similarity=0.138  Sum_probs=91.4

Q ss_pred             eEEEEeCCCceeeEeee-CCccceEEEE---EcCC-CCEEEEEc----------CCCcEEEEECCCCc--EEEEEEecCc
Q psy6984         174 MVKVWNLTNCKLKINHS-GHTGYLNTVT---VSPD-GSLCASGG----------KDMNAMLWDLNDGK--HLHTLVHNDI  236 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~-~~~~~i~~~~---~~~~-~~~l~~~~----------~d~~i~i~d~~~~~--~~~~~~~~~~  236 (380)
                      .|++.|..+.+....+. .....+.+++   |..+ ..+++.|.          ..|.|++|++..++  .++....++.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            46666666555432222 1223344443   3332 46888775          35889999986443  2233345677


Q ss_pred             eEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEeccccee
Q psy6984         237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK  316 (380)
Q Consensus       237 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  316 (380)
                      +.+++--.. .. ...       ....+++|+....+....-......+..+.....+.+++.|+.-..|.+...     
T Consensus       888 v~al~~~~g-~L-la~-------ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y-----  953 (1158)
T 3ei3_A          888 VYSMVEFNG-KL-LAS-------INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAY-----  953 (1158)
T ss_dssp             EEEEEEETT-EE-EEE-------ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEE-----
T ss_pred             CEEEeeeCC-EE-EEE-------cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEE-----
Confidence            777774332 11 111       1355777887655432211112222333334345778888887777776542     


Q ss_pred             eeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         317 FTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                          +....++.. +       .....+.+++++.+=.++ .++.+..+|.+.+.+..
T Consensus       954 ----~~~~~~L~~-~-------a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          954 ----KPMEGNFEE-I-------ARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             ----ETTTTEEEE-E-------EECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEEC
T ss_pred             ----EcCCCeEEE-E-------EeecccccEEEEEEEccC-cEEEEcCCCcEEEEecC
Confidence                112222111 1       112234567777776554 56667889999888764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.04  E-value=4.7  Score=33.65  Aligned_cols=133  Identities=16%  Similarity=0.123  Sum_probs=60.9

Q ss_pred             CCCEEEEEeCC--------CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeC-C-----CcEEEEeCCCc
Q psy6984          75 DGNYALSGSWD--------KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSR-D-----KTIKLWNTLAH  138 (380)
Q Consensus        75 ~~~~l~s~~~d--------~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~-d-----~~v~iwd~~~~  138 (380)
                      +++.++.|+.+        ..+.+||..+++-...  +...... .+++ ..++..++.|+. +     ..+.+||..+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56667777742        4588999887642221  1111111 1122 235666667765 2     35778886554


Q ss_pred             ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-----eEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEE
Q psy6984         139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-----MVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASG  211 (380)
Q Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~  211 (380)
                      .-...........-.+++.. +  +.+++.|+.++     .+.+||+.+.+-....  +........+.+  ++++++.|
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~G  250 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVH-D--GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIG  250 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEE-T--TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEE
T ss_pred             eEEECCCCCCchhceEEEEE-C--CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEEC
Confidence            22111111111111122222 2  23556666543     5788888775432221  111111122222  55677777


Q ss_pred             cCC
Q psy6984         212 GKD  214 (380)
Q Consensus       212 ~~d  214 (380)
                      +.+
T Consensus       251 G~~  253 (315)
T 4asc_A          251 GFA  253 (315)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=91.33  E-value=5.7  Score=33.16  Aligned_cols=140  Identities=12%  Similarity=0.047  Sum_probs=66.5

Q ss_pred             EEEEeCCCcEEEEECCCCceee-eecccCCCeEEEEEeCCCCEEEEEeC-----C--C----cEEEEeCCCcceEEEeeC
Q psy6984          79 ALSGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSSSR-----D--K----TIKLWNTLAHCKFTIVED  146 (380)
Q Consensus        79 l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~s~~~-----d--~----~v~iwd~~~~~~~~~~~~  146 (380)
                      ++.|+  ..+.+||..+++-.. .+..............++..++.|+.     .  .    .+..||..+..-. ....
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCC
Confidence            44455  578999998876332 11111112222233457777777773     1  1    2566776543221 1111


Q ss_pred             -CCcCcEEEEEEccCCCCCEEEEEeCC--------CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcC-C
Q psy6984         147 -GHSDWVSCVRFSPNHQNPIIVSAGWD--------RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGK-D  214 (380)
Q Consensus       147 -~~~~~v~~~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~-d  214 (380)
                       .....-.+++.. +  +.+++.|+.+        ..+.+||..+.+-...  .+........+  .-++++++.|+. +
T Consensus        85 ~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~  159 (315)
T 4asc_A           85 LPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGS  159 (315)
T ss_dssp             BSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCT
T ss_pred             CCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCC
Confidence             000000112222 1  2245555532        4588889877543221  11111111222  235667777776 2


Q ss_pred             -----CcEEEEECCCCc
Q psy6984         215 -----MNAMLWDLNDGK  226 (380)
Q Consensus       215 -----~~i~i~d~~~~~  226 (380)
                           ..+.+||+.+.+
T Consensus       160 ~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TSCBCCCEEEEETTTTE
T ss_pred             CCcccceEEEEeCCCCe
Confidence                 468889987764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.74  E-value=7.2  Score=33.30  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=37.9

Q ss_pred             ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-------ecCceEEEEeecC
Q psy6984         193 TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-------HNDIITALCFSPN  245 (380)
Q Consensus       193 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~i~~~~~~~~  245 (380)
                      -...+.++|.|+|+++++-...|.|++++...++......       .......++++|+
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            3467899999999988887768999999876555322111       1344678899886

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.70  E-value=7.1  Score=33.18  Aligned_cols=113  Identities=8%  Similarity=0.065  Sum_probs=65.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeccc-CCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEeCCCcceEEEeeCC---C
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFEDH-TKDVLSVAF--SV-DNRQIVSS-SRDKTIKLWNTLAHCKFTIVEDG---H  148 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~--~~-~~~~~~s~-~~d~~v~iwd~~~~~~~~~~~~~---~  148 (380)
                      ..++.++.||.|+-.|..+|+.+.++... ..++....-  .+ ++..++.. +.||.+..++...+.........   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47889999999999999999998887653 122222110  01 22333333 57888888886554322211100   1


Q ss_pred             cCcEEEEEEccCC-------CCCEEEEEeCCCeEEEEeCCCceeeEeee
Q psy6984         149 SDWVSCVRFSPNH-------QNPIIVSAGWDRMVKVWNLTNCKLKINHS  190 (380)
Q Consensus       149 ~~~v~~~~~~~~~-------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  190 (380)
                      ..++.. .-.|--       ....+++|+.++.+...|+++++....+.
T Consensus        91 ~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           91 TSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             cccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            111111 000000       12367889999999999999988776654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.68  E-value=11  Score=31.37  Aligned_cols=133  Identities=16%  Similarity=0.164  Sum_probs=60.2

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCceeeeecccCCCe--EEEEEeCCCCEEEEEeC------CCcEEEEeCCCcc
Q psy6984          75 DGNYALSGSWD-------KTLRLWDLAAGKTTRRFEDHTKDV--LSVAFSVDNRQIVSSSR------DKTIKLWNTLAHC  139 (380)
Q Consensus        75 ~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~s~~~------d~~v~iwd~~~~~  139 (380)
                      +++.++.|+.+       ..+.+||..+++-... ..-..+.  .+++. .++..++.|+.      -..+.+||..+..
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            56777777754       2578899877643321 1111111  11222 45666666653      2357888876543


Q ss_pred             eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEc
Q psy6984         140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      -...........-.+++.. +  +.+++.|+.+     ..+.+||+.+.+-...  .+........+.  -++++++.|+
T Consensus       187 W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG  261 (318)
T 2woz_A          187 WKDLAPMKTPRSMFGVAIH-K--GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGG  261 (318)
T ss_dssp             EEEECCCSSCCBSCEEEEE-T--TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred             EEECCCCCCCcccceEEEE-C--CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECC
Confidence            2222111111111122222 1  2355555543     3467888876543221  111111112222  2466777776


Q ss_pred             CC
Q psy6984         213 KD  214 (380)
Q Consensus       213 ~d  214 (380)
                      .+
T Consensus       262 ~~  263 (318)
T 2woz_A          262 FA  263 (318)
T ss_dssp             BC
T ss_pred             ee
Confidence            54

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.66  E-value=28  Score=35.99  Aligned_cols=132  Identities=13%  Similarity=0.119  Sum_probs=73.5

Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      ..+|.|.|+.++....+..   -.--+.-++|..+.+|--. ..+++|||+.++.++....  ....|.--.|-.. +..
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~-~~l  119 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL-NTV  119 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC-Cee
Confidence            3478889988755432211   1111233578777666554 7889999987655443221  1223443444332 222


Q ss_pred             EEEEEeCCCeEEEEeCCCce-eeEeeeCC----ccceEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCc
Q psy6984         165 IIVSAGWDRMVKVWNLTNCK-LKINHSGH----TGYLNTVTVSPDGSLCASGG-------KDMNAMLWDLNDGK  226 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~-~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~  226 (380)
                      -|+|   +..|..|++.... +...+..|    ...|-.-..+++.++++..|       -.|.+.+|..+.+.
T Consensus       120 ~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~  190 (1630)
T 1xi4_A          120 ALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  190 (1630)
T ss_pred             EEEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence            2333   4689999996422 21111112    34566667788899876433       34788888876543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=87.13  E-value=13  Score=31.54  Aligned_cols=52  Identities=10%  Similarity=0.101  Sum_probs=27.7

Q ss_pred             CCCEEEEEeC-C---------CcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCC
Q psy6984          75 DGNYALSGSW-D---------KTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRD  127 (380)
Q Consensus        75 ~~~~l~s~~~-d---------~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d  127 (380)
                      +++.++.|+. +         ..+.+||..+++-...  .......-.++.. .++..++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            5667777765 2         4688999887643221  1101111112222 567777778754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.62  E-value=13  Score=30.98  Aligned_cols=135  Identities=14%  Similarity=0.101  Sum_probs=62.5

Q ss_pred             cEEEEECCCCceeee-ecccCCCeEEEEEeCCCCEEEEEeC----CC-------cEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984          87 TLRLWDLAAGKTTRR-FEDHTKDVLSVAFSVDNRQIVSSSR----DK-------TIKLWNTLAHCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~s~~~----d~-------~v~iwd~~~~~~~~~~~~~~~~~v~~  154 (380)
                      .+..||..+++-... ...............++..++.|+.    ++       .+..||..+..-...........-.+
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            378999887764331 1111111122233456777777773    12       15667755432211110011111112


Q ss_pred             EEEccCCCCCEEEEEeCC-------CeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcC------CCcEEE
Q psy6984         155 VRFSPNHQNPIIVSAGWD-------RMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGK------DMNAML  219 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~i  219 (380)
                      ++.. +  +.+++.|+.+       ..+.+||+.+.+-...  .+....... +. ..++++++.|+.      -..+.+
T Consensus       105 ~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~  179 (318)
T 2woz_A          105 LGEV-D--DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN-VI-SHNGMIYCLGGKTDDKKCTNRVFI  179 (318)
T ss_dssp             EEEE-T--TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCE-EE-EETTEEEEECCEESSSCBCCCEEE
T ss_pred             eEEE-C--CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccE-EE-EECCEEEEEcCCCCCCCccceEEE
Confidence            2222 2  2255556543       3477888876543221  111111111 12 246677777764      245889


Q ss_pred             EECCCCc
Q psy6984         220 WDLNDGK  226 (380)
Q Consensus       220 ~d~~~~~  226 (380)
                      ||+.+.+
T Consensus       180 yd~~~~~  186 (318)
T 2woz_A          180 YNPKKGD  186 (318)
T ss_dssp             EETTTTE
T ss_pred             EcCCCCE
Confidence            9988765

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=86.43  E-value=5.9  Score=33.67  Aligned_cols=116  Identities=9%  Similarity=0.023  Sum_probs=65.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC-CCCCEEEEE-eCCCeEEEEeCCCceeeEeeeC----C
Q psy6984         119 RQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN-HQNPIIVSA-GWDRMVKVWNLTNCKLKINHSG----H  192 (380)
Q Consensus       119 ~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~----~  192 (380)
                      ..++.++.||.|.-.|..++............++-...-... .....++.. ..||.|..++..++........    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            367788888888888876665554443221111111110000 011233333 5799999999887654433221    1


Q ss_pred             ccceEE---EEE-c----CCCCEEEEEcCCCcEEEEECCCCcEEEEEEec
Q psy6984         193 TGYLNT---VTV-S----PDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN  234 (380)
Q Consensus       193 ~~~i~~---~~~-~----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  234 (380)
                      ..++..   ..+ .    ..+..+.+|+.++++...|..+|+.+..+...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            111110   000 0    14567889999999999999999999888543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.10  E-value=18  Score=32.18  Aligned_cols=105  Identities=11%  Similarity=0.162  Sum_probs=57.6

Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe--eCC-----CcCcEEEEEEccC---CCCCEEEEEeC-----
Q psy6984         107 KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV--EDG-----HSDWVSCVRFSPN---HQNPIIVSAGW-----  171 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~--~~~-----~~~~v~~~~~~~~---~~~~~l~s~~~-----  171 (380)
                      .....++|.|+|+.+++-...+.|++++...+......  ...     .......++++|+   ... ++++-+.     
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~-lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY-IYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE-EEEEEEEECTTC
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE-EEEEEeccccCC
Confidence            45678999999987776655457888865333222211  111     1344668999985   222 3333221     


Q ss_pred             -------CCeEEEEeCCCc-------eeeEe-ee-CCccceEEEEEcCCCCEEEEEc
Q psy6984         172 -------DRMVKVWNLTNC-------KLKIN-HS-GHTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       172 -------d~~v~iwd~~~~-------~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~  212 (380)
                             ...|.-+++...       +.+.. .. ........++|.|||.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   134555554321       11111 22 1123468899999999877654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.98  E-value=12  Score=34.21  Aligned_cols=114  Identities=17%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcc-------------eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984         107 KDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHC-------------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                      .....+.++|||++++.++ .+.++.++|..+-.             .....+.  .......+|.+++  ..+.|.-.|
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--GlGPlHt~Fd~~G--~aYTtlfid  398 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--GLGPLHTTFDGRG--NAYTTLFID  398 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--CSCEEEEEECSSS--EEEEEETTT
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--CCcccEEEECCCC--ceEeeeeec
Confidence            3456788999999987654 67899999864210             0111111  1224567887765  345566789


Q ss_pred             CeEEEEeCCCc----------eeeEeeeCCccceEEE------EEcCCCCEEEEEc---CCCcE----------EEEECC
Q psy6984         173 RMVKVWNLTNC----------KLKINHSGHTGYLNTV------TVSPDGSLCASGG---KDMNA----------MLWDLN  223 (380)
Q Consensus       173 ~~v~iwd~~~~----------~~~~~~~~~~~~i~~~------~~~~~~~~l~~~~---~d~~i----------~i~d~~  223 (380)
                      .+|..|++...          ..+....-|-.+ -.+      .-.|+|++|++..   .|+.+          .++|+.
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIs  477 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDIS  477 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECS
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecC
Confidence            99999998653          222222222211 111      1258999999874   45544          677774


Q ss_pred             CC
Q psy6984         224 DG  225 (380)
Q Consensus       224 ~~  225 (380)
                      ..
T Consensus       478 Gd  479 (638)
T 3sbq_A          478 GD  479 (638)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=84.07  E-value=29  Score=32.85  Aligned_cols=150  Identities=13%  Similarity=0.113  Sum_probs=73.6

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCcceEEEe
Q psy6984          75 DGNYALSGSWDK------TLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSRDK--TIKLWNTLAHCKFTIV  144 (380)
Q Consensus        75 ~~~~l~s~~~d~------~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~d~--~v~iwd~~~~~~~~~~  144 (380)
                      +++.++.||.++      .+.+||..+++-...  +.. ...-.+.+...++..++.|+.++  .+.+||..+..-....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            677778877543      578899877532221  111 11112233324788888887654  6888887654322111


Q ss_pred             eCC----CcCcEEEEEEccCCCCCEEEEEeC--C-----CeEEEEeCCCce------eeEeee--CCccceEEEEEcCCC
Q psy6984         145 EDG----HSDWVSCVRFSPNHQNPIIVSAGW--D-----RMVKVWNLTNCK------LKINHS--GHTGYLNTVTVSPDG  205 (380)
Q Consensus       145 ~~~----~~~~v~~~~~~~~~~~~~l~s~~~--d-----~~v~iwd~~~~~------~~~~~~--~~~~~i~~~~~~~~~  205 (380)
                      ..+    ......++.+..+. +.+++.||.  +     ..+..||+.+..      -.....  .....-.++....++
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~-~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~  608 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVS-KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR  608 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTT-TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT
T ss_pred             CCCCCCCcccceeEEEEeCCC-CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC
Confidence            100    01111223444321 235556655  2     458889987765      111111  011111122233336


Q ss_pred             CEEEEEcCC--------CcEEEEECCCCc
Q psy6984         206 SLCASGGKD--------MNAMLWDLNDGK  226 (380)
Q Consensus       206 ~~l~~~~~d--------~~i~i~d~~~~~  226 (380)
                      ++++.|+.+        ..+.+||+.+.+
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            777777743        457777776653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=83.56  E-value=23  Score=31.33  Aligned_cols=197  Identities=11%  Similarity=0.104  Sum_probs=113.2

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCC----cceEEEEEccCCCEEEEEe-------CCC
Q psy6984          18 WVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHS----HFISDIVLSSDGNYALSGS-------WDK   86 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~-------~d~   86 (380)
                      .|..=.|-.  ++.|+-.. +..|.-|++..+.    .|.+.+..|.    .-|.....+++.++++..+       -.|
T Consensus       107 ~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s----~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G  179 (494)
T 1bpo_A          107 DVTFWKWIS--LNTVALVT-DNAVYHWSMEGES----QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  179 (494)
T ss_dssp             CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSC----CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred             CceEEEecC--CCeEEEEc-CCeeEEecccCCC----CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence            444444443  23455444 3588888876422    2333344443    2366667788999877443       246


Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCC---CEEEEEeCC---CcEEEEeCCCc--------ceEEEee---CCCc
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN---RQIVSSSRD---KTIKLWNTLAH--------CKFTIVE---DGHS  149 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~s~~~d---~~v~iwd~~~~--------~~~~~~~---~~~~  149 (380)
                      .+.+|..+. +..+.+++|.+....+.+..+.   ..++-+.+.   +.+.+-++...        .+...+.   +...
T Consensus       180 ~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~  258 (494)
T 1bpo_A          180 AMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN  258 (494)
T ss_dssp             EEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTT
T ss_pred             eEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccccc
Confidence            788999764 4556678887666555443211   234444443   67777776322        0111111   1223


Q ss_pred             CcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      +.--++.+++.  ..+++.-..-|.|.+||+.++......+-....|...+.+....-++.-...|.|.-..+..
T Consensus       259 DFPvamqvs~k--ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          259 DFPVAMQISEK--HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             CCEEEEEEETT--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             CceeEEEeccc--CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            44445666664  44677777889999999999988766554555666666555555555555666665554443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=83.39  E-value=24  Score=31.28  Aligned_cols=222  Identities=12%  Similarity=0.067  Sum_probs=114.5

Q ss_pred             CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      +.+|.|.|+.++....+..-   .--+.-++|..+.+|--. ..++++||+..+.++.....  .+.|.--.|-...   
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--~e~VvfWkWis~~---  117 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLN---  117 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEETT---
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--CCCceEEEecCCC---
Confidence            34788999987554422111   112334678777776655 78999999988766554332  2223333443321   


Q ss_pred             EEEEEeCCCeEEEEeCCCc-eeeEeeeCC----ccceEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCcEEEEEE
Q psy6984         165 IIVSAGWDRMVKVWNLTNC-KLKINHSGH----TGYLNTVTVSPDGSLCASGG-------KDMNAMLWDLNDGKHLHTLV  232 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~  232 (380)
                      .|+-.+ +..|..|++... .+...+..|    ...|-.-..+++.++++..+       -.|.+.+|..+.+.....-.
T Consensus       118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG  196 (494)
T 1bpo_A          118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG  196 (494)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred             eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence            233222 568999999653 222233333    34577777889999876543       24778899887664332211


Q ss_pred             ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCc---------eeeeeeecc---ccceeEEEEeecCCEEEEe
Q psy6984         233 HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG---------KMETPFFSL---FRDVLSVAFSVDNRQIVSS  300 (380)
Q Consensus       233 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~~v~~~~~s~~~~~l~s~  300 (380)
                      |...-..+.+.-+.....+-+-..+....+.+.+.++.+.         +...-++..   ..-..++..|+....++.-
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            1111111110000000000000111112244555555332         001111111   1113467788888888888


Q ss_pred             eCCCcEEEEeccccee
Q psy6984         301 SRDKTIKLWNTLAHCK  316 (380)
Q Consensus       301 ~~dg~v~iw~~~~~~~  316 (380)
                      +.-|.|+++|+.++..
T Consensus       277 TK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTC  292 (494)
T ss_dssp             ETTSEEEEEETTTCCE
T ss_pred             ecCceEEEEeccccee
Confidence            8899999998765543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=80.43  E-value=40  Score=31.91  Aligned_cols=151  Identities=11%  Similarity=0.096  Sum_probs=77.6

Q ss_pred             cCCCEEEEEeCC----CcEEEEECCCCceeeee-c------ccCCCeEEEEEeC-CCCEEEEEeCCC------cEEEEeC
Q psy6984          74 SDGNYALSGSWD----KTLRLWDLAAGKTTRRF-E------DHTKDVLSVAFSV-DNRQIVSSSRDK------TIKLWNT  135 (380)
Q Consensus        74 ~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~-~------~h~~~v~~~~~~~-~~~~~~s~~~d~------~v~iwd~  135 (380)
                      .++..++.||.+    ..+.+||..+++-...- .      .....-.+++..+ ++..++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            466777778754    46888998776433322 1      1111112333333 677777776442      4667776


Q ss_pred             CCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEee-----eCCccceEEEEEcCC-CCE
Q psy6984         136 LAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINH-----SGHTGYLNTVTVSPD-GSL  207 (380)
Q Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~-----~~~~~~i~~~~~~~~-~~~  207 (380)
                      .+..-...........-.+.+...+  +.+++.||.++  .+.+||..+..-....     +.......++.+..+ +++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTT--SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcC--CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            5432211110011111112232222  23666676554  6889998875432211     111122233555655 677


Q ss_pred             EEEEcCC-------CcEEEEECCCCc
Q psy6984         208 CASGGKD-------MNAMLWDLNDGK  226 (380)
Q Consensus       208 l~~~~~d-------~~i~i~d~~~~~  226 (380)
                      ++.|+.+       ..+..||+.+.+
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCc
Confidence            7888762       458889988776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	380
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-33
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-25
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-32
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-30
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-25
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-20
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-18
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-18
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-17
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-17
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-15
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-15
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-13
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-12
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-10
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-12
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-10
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-12
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-11
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-08
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	8e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	4e-05

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (311), Expect = 4e-33
 Identities = 60/317 (18%), Positives = 111/317 (35%), Gaps = 25/317 (7%)

Query: 56  PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115
            ++ L+GH   I  +   +D    +S S D  L +WD             +  V++ A++
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

Query: 116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175
                +     D    ++N         V    +     +       +  IV++  D   
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166

Query: 176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HN 234
            +W++   +     +GHTG + +++++PD  L  SG  D +A LWD+ +G    T   H 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDN 294
             I A+CF PN +                L     +   M     ++   + SV+FS   
Sbjct: 227 SDINAICFFPNGNA----FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 295 RQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWST 354
           R +++   D    +W           D         L                  L  + 
Sbjct: 283 RLLLAGYDDFNCNVW-----------DALKADRAGVL---------AGHDNRVSCLGVTD 322

Query: 355 DGQTLFAGYSDNTIRVW 371
           DG  +  G  D+ +++W
Sbjct: 323 DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  104 bits (260), Expect = 5e-26
 Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 63  HSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 122
           H+  +  + L+ D    +SG+ D + +LWD+  G   + F  H  D+ ++ F  +     
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 123 SSSRDKTIKL-WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLT 181
           + S D T +L          T   D     ++ V FS + +  ++++   D    VW+  
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR--LLLAGYDDFNCNVWDAL 300

Query: 182 NCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWD 221
                   +GH   ++ + V+ DG   A+G  D    +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (256), Expect = 2e-25
 Identities = 53/308 (17%), Positives = 96/308 (31%), Gaps = 15/308 (4%)

Query: 6   LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSH 65
           ++ R TL GH   +  +         ++S S+D  LIIW               +   S 
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYT-----TNKVHAIPLRSS 98

Query: 66  FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
           ++     +  GNY   G  D    +++L   +   R                        
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 126 RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
                                        +  S      + VS   D   K+W++     
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218

Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI---ITALCF 242
           +   +GH   +N +   P+G+  A+G  D    L+DL   + L T  H++I   IT++ F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR 302
           S +         +       N  ++                 V  +  + D   + + S 
Sbjct: 279 SKSGRL------LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

Query: 303 DKTIKLWN 310
           D  +K+WN
Sbjct: 333 DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (220), Expect = 1e-20
 Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 4/133 (3%)

Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
                  R T  GH   +  I   P   +   + S D T  ++ L  D            
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQELMTYSHDN-- 268

Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
                I+ +  S  G   L+G  D    +WD            H   V  +  + D   +
Sbjct: 269 -IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 122 VSSSRDKTIKLWN 134
            + S D  +K+WN
Sbjct: 328 ATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  122 bits (306), Expect = 1e-32
 Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 38/328 (11%)

Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
           L GH   ++ ++     +  +S S D T+++WD   G   R  + HT  V  ++F    +
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
            + S S D TIKLW+         +   H    +    S       IVSA  D+ +K+W 
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIIT 238
           +         +GH  ++  V  + DG+L AS   D    +W +   +    L  H  ++ 
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 239 ALCFSPNRSFQKIKLDISRTLQKS--------------NLILYPINHGKMETPFFSLFRD 284
            + ++P  S+  I        +KS               + ++ ++ G            
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 285 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADP 344
           V  V F    + I+S + DKT+++W           D + K+ ++ L          A  
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVW-----------DYKNKRCMKTL---------NAHE 289

Query: 345 PMCLSLAWSTDGQTLFAGYSDNTIRVWQ 372
               SL +      +  G  D T++VW+
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (288), Expect = 4e-30
 Identities = 83/324 (25%), Positives = 135/324 (41%), Gaps = 36/324 (11%)

Query: 7   QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
             +  L+GH   VT++  +P F   ++S S D T+ +W     D   G  ++ LKGH+  
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVW-----DYETGDFERTLKGHTDS 61

Query: 67  ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
           + DI     G    S S D T++LWD    +  R    H  +V SV+   +   IVS+SR
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
           DKTIK+W  +          GH +WV  VR + +    +I S   D+ V+VW +   + K
Sbjct: 122 DKTIKMWE-VQTGYCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTVRVWVVATKECK 178

Query: 187 INHSGHTGYLNTVT--------------------VSPDGSLCASGGKDMNAMLWDLNDGK 226
                H   +  ++                        G    SG +D    +WD++ G 
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 227 HLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDV 285
            L TLV H++ +  + F     F      I        L ++   + +      +    V
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKF------ILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 292

Query: 286 LSVAFSVDNRQIVSSSRDKTIKLW 309
            S+ F      +V+ S D+T+K+W
Sbjct: 293 TSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (189), Expect = 1e-16
 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 9/244 (3%)

Query: 131 KLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS 190
           K W      K+ +   GH   V+ V F P     ++VSA  D  +KVW+      +    
Sbjct: 1   KEWIPRPPEKYAL--SGHRSPVTRVIFHPV--FSVMVSASEDATIKVWDYETGDFERTLK 56

Query: 191 GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQK 250
           GHT  +  ++    G L AS   DM   LWD    + + T+  +D   +           
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 116

Query: 251 IKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310
           +     +T++     ++ +  G     F      V  V  + D   I S S D+T+++W 
Sbjct: 117 VSASRDKTIK-----MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

Query: 311 TLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRV 370
                    +      +         S S+ ++     +      G  L +G  D TI++
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 371 WQVS 374
           W VS
Sbjct: 232 WDVS 235

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 4   ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGH 63
            T     TL GH+ WV  +  +      ILSC+ D TL +W     D       K L  H
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVW-----DYKNKRCMKTLNAH 288

Query: 64  SHFISDIVLSSDGNYALSGSWDKTLRLWD 92
            HF++ +       Y ++GS D+T+++W+
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (256), Expect = 3e-25
 Identities = 67/385 (17%), Positives = 132/385 (34%), Gaps = 53/385 (13%)

Query: 22  IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS 81
           +  + +     L    ++  I++          V   +   H+  +  +  S+DG Y  +
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPR-EIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79

Query: 82  GSWDKTLRLWDLAAGKTTRRFED------------------HTKDVLSVAFSVDNRQIVS 123
           G  +KT +++ ++ G    R  D                      + SV FS D + + +
Sbjct: 80  GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138

Query: 124 SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183
            + D+ I++W+        IV                     +VS   DR V++W+L   
Sbjct: 139 GAEDRLIRIWD---IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 195

Query: 184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV--------HND 235
           +  +  S   G         DG   A+G  D    +WD   G  +  L         H D
Sbjct: 196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 255

Query: 236 IITALCFSPNRSF-------QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV 288
            + ++ F+ +          + +KL   +     +    P +    E  +      VLSV
Sbjct: 256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG-TCEVTYIGHKDFVLSV 314

Query: 289 AFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCL 348
           A + ++  I+S S+D+ +  W           D ++   +  L+    S  + A   +  
Sbjct: 315 ATTQNDEYILSGSKDRGVLFW-----------DKKSGNPLLMLQGHRNSVISVA---VAN 360

Query: 349 SLAWSTDGQTLFAGYSDNTIRVWQV 373
             +   +      G  D   R+W+ 
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (228), Expect = 2e-21
 Identities = 72/348 (20%), Positives = 125/348 (35%), Gaps = 37/348 (10%)

Query: 53  YGVPQKRLKGHSHFISDIVLSSDGNY---ALSGSWDKTLRLWDLAAGKTTR----RFEDH 105
           Y VP  +   HS  I   +L  D      AL    +    L++ A  +       +  DH
Sbjct: 2   YLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDH 61

Query: 106 TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH-----------------CKFTIVEDGH 148
           T  V  V FS D   + +   +KT +++                         T      
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC 208
             ++  V FSP+ +   + +   DR++++W++ N K+ +   GH   + ++   P G   
Sbjct: 121 DLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 209 ASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIK--LDISRTLQKSNLIL 266
            SG  D    +WDL  G+   TL   D +T +  SP          LD +  +  S    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 267 YPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKK 326
                             V SV F+ D + +VS S D+++KLWN        + +   K 
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN--------LQNANNKS 290

Query: 327 MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
             +         +        LS+A + + + + +G  D  +  W   
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 11  TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTR-------DDTNYGVPQKRLKGH 63
           +  GH   V  +        +++S S D ++ +W L            N G  +    GH
Sbjct: 249 SGTGHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307

Query: 64  SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA------FSVD 117
             F+  +  + +  Y LSGS D+ +  WD  +G      + H   V+SVA         +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 118 NRQIVSSSRDKTIKLWN 134
                + S D   ++W 
Sbjct: 368 YNVFATGSGDCKARIWK 384

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (234), Expect = 2e-22
 Identities = 53/317 (16%), Positives = 107/317 (33%), Gaps = 35/317 (11%)

Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK-----TTRRFEDHTKDVLSVAFSV 116
            H   +  + +S+   +  +G     +++WD++        +     +    + S     
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 117 DNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVK 176
           D   ++      T+ +W+  A     I  +  S   +C   + +  + +  S   D  + 
Sbjct: 108 DGCTLIVGGEASTLSIWDL-AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 177 VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI 236
           VW+L N  L     GHT   + + +S DG+   +GG D     WDL +G+ L        
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226

Query: 237 ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ 296
           I +L + P   +  + ++ S                  E+   S       + F+   + 
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS-------LKFAYCGKW 279

Query: 297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG 356
            VS+ +D  +  W                  + + +               LS   S D 
Sbjct: 280 FVSTGKDNLLNAW-----------RTPYGASIFQSKES----------SSVLSCDISVDD 318

Query: 357 QTLFAGYSDNTIRVWQV 373
           + +  G  D    V++V
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 7e-16
 Identities = 49/299 (16%), Positives = 92/299 (30%), Gaps = 11/299 (3%)

Query: 14  GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS 73
            H   V  +  +   P   +       + +W ++       V Q       ++I    L 
Sbjct: 49  NHGEVVCAVTISN--PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106

Query: 74  SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW 133
            DG   + G    TL      A  T R   + T    +      +          +    
Sbjct: 107 PDGCTLIVGGEASTLS-IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165

Query: 134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT 193
                   T+V               ++    + + G D  V+ W+L   +    H   T
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFT 224

Query: 194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKL 253
             + ++   P G   A G +  N  +  +N        +H   + +L F+    +     
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW----- 279

Query: 254 DISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTL 312
               T + + L  +   +G            VLS   SVD++ IV+ S DK   ++  +
Sbjct: 280 -FVSTGKDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 6e-13
 Identities = 41/295 (13%), Positives = 85/295 (28%), Gaps = 32/295 (10%)

Query: 105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164
            +K   S   + D +          +       H +  I    H + V  V  S   +  
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-INTLNHGEVVCAVTISNPTR-- 64

Query: 165 IIVSAGWDRMVKVWNLTNCKLK-----INHSGHTGYLNTVTVSPDGSLCASGGKDMNAML 219
             V  G    VKVW++++   K     ++      Y+ +  + PDG     GG+     +
Sbjct: 65  -HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123

Query: 220 WDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF 279
           WDL                        +               N+ ++ +++  +   F 
Sbjct: 124 WDLAAPTPRIKAELTSSA---PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180

Query: 280 SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC--------------------KFTI 319
                   +  S D  ++ +   D T++ W+                         ++  
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240

Query: 320 VDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
           V +E+  +                    LSL ++  G+   +   DN +  W+  
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 2e-20
 Identities = 68/360 (18%), Positives = 103/360 (28%), Gaps = 63/360 (17%)

Query: 50  DTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV 109
                   K LKGH   +    L   GN  +SGS D TL++W    GK  R    HT  V
Sbjct: 2   RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 110 LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH-------- 161
            S     +     S+ R   +    T                +                 
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 162 -------------------------QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYL 196
                                        +VS  +D MVKVW+           GHT   
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR- 179

Query: 197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDI 255
              ++  DG    SG  D +  +WD+  G  +HTL  H  + + +    N         +
Sbjct: 180 -VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL-------V 231

Query: 256 SRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 315
           S     +  I        ++T                +   +++SS D T+KLW      
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW------ 285

Query: 316 KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNT----IRVW 371
                DL+T + +  L       S          +  S        G  + T    + V 
Sbjct: 286 -----DLKTGEFIRNLVTLESGGSGGV----VWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 3e-18
 Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 20/218 (9%)

Query: 15  HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS 74
             G V  +         ++S + D  + +W     D         L+GH++ +  +    
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVW-----DPETETCLHTLQGHTNRVYSL--QF 185

Query: 75  DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWN 134
           DG + +SGS D ++R+WD+  G        H      +     +  +VS + D T+K+W+
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWD 243

Query: 135 TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-----KINH 189
                   +      +               ++++  D  VK+W+L   +       +  
Sbjct: 244 I--KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301

Query: 190 SGHTGYLNTVTVSPDGSLCASGGKD----MNAMLWDLN 223
            G  G +  +  S    +CA G ++       ++ D +
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (184), Expect = 9e-16
 Identities = 43/283 (15%), Positives = 79/283 (27%), Gaps = 39/283 (13%)

Query: 91  WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD 150
           W     K+ +  + H   V++        +IVS S D T+K+W+     K      GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWS-AVTGKCLRTLVGHTG 58

Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCAS 210
            V   +   N                        L  + S                   S
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM------HLHEKRVVS 112

Query: 211 GGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPIN 270
           G +D    +WD+  G+ LH L+ +           R       D           +   +
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM---------VKVWD 163

Query: 271 HGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEE 330
                             +   D   +VS S D +I++W+                    
Sbjct: 164 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD-------------------- 203

Query: 331 LRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV 373
              +  +          L+         L +G +D+T+++W +
Sbjct: 204 --VETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 16/137 (11%)

Query: 7   QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
               TL GH    + +       + ++S + D+T+ IW    D       Q     + H 
Sbjct: 208 NCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIW----DIKTGQCLQTLQGPNKHQ 260

Query: 67  ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-----EDHTKDVLSVAFSVDNRQI 121
            +   L  + N+ ++ S D T++LWDL  G+  R             V  +  S      
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

Query: 122 VSSSRDKT----IKLWN 134
              SR+ T    + + +
Sbjct: 321 AVGSRNGTEETKLLVLD 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.4 bits (204), Expect = 2e-18
 Identities = 32/340 (9%), Positives = 89/340 (26%), Gaps = 43/340 (12%)

Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTT---RRFEDHTKDVLSVAFSV 116
            +    +ISDI +    +  L  SWD +L ++            +   +   +L   F  
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 117 DNRQIV---SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173
           +    +   +   +            +     + +       ++  +           + 
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 174 MVKVWNLTNCKLKINHSGH--TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
           +             N + +         T+  + S    G  +     + L   +  +  
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 232 VHNDII--------------TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETP 277
           +    +                   S       ++    +    ++   +     ++   
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246

Query: 278 FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVS 337
             +L   V S+ FS  ++ + ++  D  I  W           +L+T+K ++        
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW-----------NLQTRKKIKNFA----- 290

Query: 338 QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTS 377
                       +  +     L    SD+T +       +
Sbjct: 291 -----KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 20/162 (12%), Positives = 50/162 (30%), Gaps = 16/162 (9%)

Query: 1   MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQK-- 58
              E        +G    +  +A  PK  +     S D  + +        +Y   ++  
Sbjct: 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237

Query: 59  --------RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL 110
                   +    ++ ++ I  S    +  +   D  +  W+L   K  + F    +D  
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS- 296

Query: 111 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV 152
            V  +  +  +  ++ D T K    +         + ++  +
Sbjct: 297 VVKIACSDNILCLATSDDTFKTNAAIDQTI-----ELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK---INHSGHTGYLNTVT 200
           +E    D++S ++  P+    +++   WD  + V+           +    +   L    
Sbjct: 6   IEQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 201 VSPDGSLCASGGKDMNAMLWDLNDGKHLH 229
              +  L    G     +L     G    
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSF 92

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 21/265 (7%), Positives = 66/265 (24%), Gaps = 19/265 (7%)

Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
             + + L  +L  +   +            I   +    ++   L    +   +      
Sbjct: 43  QAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN 101

Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD--NR 119
                I           +  G  +              +    +   V +  F++D  + 
Sbjct: 102 LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161

Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP-IIVSAGWDRMVKVW 178
           +++    +  ++ +            +           +   +       +  D  V V 
Sbjct: 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221

Query: 179 NLTN---------------CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN 223
              +                +L +  +     +N++  SP      + G D     W+L 
Sbjct: 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281

Query: 224 DGKHLHTLVHNDIITALCFSPNRSF 248
             K +      +  + +  + + + 
Sbjct: 282 TRKKIKNFAKFNEDSVVKIACSDNI 306

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.9 bits (200), Expect = 6e-18
 Identities = 40/321 (12%), Positives = 87/321 (27%), Gaps = 12/321 (3%)

Query: 55  VPQKR-LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA 113
           VPQ+  L+GH   +    L  + NY ++G+ DK +R++D    K   +   H   V ++ 
Sbjct: 2   VPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

Query: 114 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR 173
           ++     +  S+             C         +    C+          IV+   D 
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR--CLDIVEYKNIKYIVTGSRDN 118

Query: 174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH 233
            + VW L       +H     Y        +        +   A +  ++   ++     
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178

Query: 234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD 293
            D    +                  L      +Y   +        S   D  ++     
Sbjct: 179 YDNTLIVWDVAQMKCL-------YILSGHTDRIYSTIYDHERKRCISASMDT-TIRIWDL 230

Query: 294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS 353
               +  +      L   L      +V       +     +  S+          ++   
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 354 TDGQTLFAGYSDNTIRVWQVS 374
                +    S+N   ++ + 
Sbjct: 291 YVSDNILVSGSENQFNIYNLR 311

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.9 bits (169), Expect = 6e-14
 Identities = 40/374 (10%), Positives = 100/374 (26%), Gaps = 39/374 (10%)

Query: 9   RGTLNGHNGWV-TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFI 67
           R TL GH   V T +     +   +++ + D  + ++     D+       +L GH   +
Sbjct: 5   RTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVY-----DSINKKFLLQLSGHDGGV 56

Query: 68  SDIVLSSDGN-YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
             +  +  G   + S      +               + T   L +    + + IV+ SR
Sbjct: 57  WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116

Query: 127 DKTIKLWN--------TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVW 178
           D T+ +W                  +     +               + +      + V 
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176

Query: 179 NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIIT 238
              +  L +        L  ++   D         +    +    D       + N  + 
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236

Query: 239 ALCFSPNRSFQKIKLDISRTLQ-KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297
                       ++L     +   ++  +   +       F     ++ ++     +  I
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296

Query: 298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQ 357
           + S  +    ++           +L + K        +V  +   D     S+ +     
Sbjct: 297 LVSGSENQFNIY-----------NLRSGK--------LVHANILKDADQIWSVNFKGKTL 337

Query: 358 TLFAGYSDNTIRVW 371
            + A   D    + 
Sbjct: 338 -VAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 1e-07
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164
           H  ++ ++     +  I+ S  +    ++N  +           +D +  V F       
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--- 336

Query: 165 IIVSAGWDRMVKVWNL 180
           ++ +   D    +  L
Sbjct: 337 LVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 34/181 (18%), Positives = 62/181 (34%), Gaps = 9/181 (4%)

Query: 44  WKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 103
             L   D         L GH+  I   +   +    +S S D T+R+WDL  G+     +
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240

Query: 104 DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN 163
            HT  V  +  S       ++             +         H++  +   F  +   
Sbjct: 241 GHTALVGLLRLSDKFLVSAAADGSIRGWDA----NDYSRKFSYHHTNLSAITTFYVSDN- 295

Query: 164 PIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222
             I+ +G +    ++NL + K +  N       + +V       L A+  KD  + L  L
Sbjct: 296 --ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEIL 352

Query: 223 N 223
           +
Sbjct: 353 D 353

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 79.8 bits (195), Expect = 3e-17
 Identities = 35/331 (10%), Positives = 84/331 (25%), Gaps = 41/331 (12%)

Query: 72  LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQI-VSSSRDKT 129
           L +   Y +  ++   L + D+A+    +           +   + DNR   V ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 130 IKLWNTLAHCKFTIVEDG-----HSDWVSCVRFSPNHQNPIIVSAG----------WDRM 174
           I   +                      +     SP+ +                      
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 175 VKVWNLTNCKLK--INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232
           ++V++  +      +        +  +  + DGSL  +G         D+  GK+   L 
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI---YKMDVKTGKYTVALP 180

Query: 233 HNDIITALCFSPN---------RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR 283
             +       +P+            +   L      +         +             
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240

Query: 284 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKAD 343
              +  F+       +  R             +    DL+ +K+++              
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL---------- 290

Query: 344 PPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
                 +A+   G  L+ G + N + V+   
Sbjct: 291 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 25/279 (8%), Positives = 54/279 (19%), Gaps = 37/279 (13%)

Query: 3   TETLQLRGTLN-GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQ-KRL 60
             +  +  +               P      +  +    +    L      +        
Sbjct: 25  VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP 84

Query: 61  KGHSHFISDIVLSSDGNYALSGSWDKT------------LRLWDLAAGKTTRRFEDHT-- 106
                 +    +S DG    +                  L ++  A G   +        
Sbjct: 85  GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 144

Query: 107 KDVLSVAFSVDNRQIVSSSRDKTIKLWN-------------------TLAHCKFTIVEDG 147
           + V  +  + D    V+      + +                           +      
Sbjct: 145 RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204

Query: 148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL-TNCKLKINHSGHTGYLNTVTVSPDGS 206
           H   +               +A         +L T        +  T    T   SP   
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264

Query: 207 LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPN 245
               G  +  A  +DL   K +     +     + F   
Sbjct: 265 NQIYGVLNRLA-KYDLKQRKLIKAANLDHTYYCVAFDKK 302

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 16/151 (10%), Positives = 38/151 (25%), Gaps = 4/151 (2%)

Query: 81  SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK 140
           + +         L          + +       F  D +   ++         +      
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT 242

Query: 141 FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVT 200
            T      ++       SP   N      G    +  ++L   KL I  +        V 
Sbjct: 243 HTQEFADLTELYFTGLRSPKDPN---QIYGVLNRLAKYDLKQRKL-IKAANLDHTYYCVA 298

Query: 201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
               G     GG   +  +++ +  + +  +
Sbjct: 299 FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 13/135 (9%), Positives = 29/135 (21%), Gaps = 6/135 (4%)

Query: 1   MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
                     +       +  IA          +       +      D        +  
Sbjct: 192 PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV----DLKTGKTHTQEF 247

Query: 61  KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
              +      + S      + G  +  L  +DL   K  +           VAF     +
Sbjct: 248 ADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDK 305

Query: 121 IVSSSRDKTIKLWNT 135
           +        + ++N 
Sbjct: 306 LYLGGTFNDLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 8/105 (7%)

Query: 15  HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS 74
                     +P   D        N L  +     D       K      H    +    
Sbjct: 250 LTELYFTGLRSP--KDPNQIYGVLNRLAKY-----DLKQRKLIKAAN-LDHTYYCVAFDK 301

Query: 75  DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
            G+    G     L +++    +  +  +    D+ +    V  R
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR 346

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 78.7 bits (192), Expect = 6e-17
 Identities = 39/324 (12%), Positives = 84/324 (25%), Gaps = 59/324 (18%)

Query: 30  DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS--DIVLSSDGNYAL-SGSWDK 86
           D IL+ +R + L++      DT      K +       +    +++  G  A  + +  +
Sbjct: 2   DYILAPARPDKLVVI-----DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE 56

Query: 87  TLRLWDLAAGKTTRRFEDHT-----KDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF 141
           +L   DL  G+T  R +  T     K +   A S D + +        ++L +       
Sbjct: 57  SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116

Query: 142 TIVEDG----------HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI---- 187
             + D               ++ + ++ +     +   G D  V                
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGS--KLYGLGRDLHVMDPEAGTLVEDKPIQS 174

Query: 188 -----------------NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT 230
                            + S         T   D             +  DL  G+    
Sbjct: 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234

Query: 231 LVHNDIITALCFSPNRSFQKI---KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLS 287
            V    +     + N +  +       +     + N  +  +                 S
Sbjct: 235 EVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS----------YYS 284

Query: 288 VAFSVDNRQIVSSSRDKTIKLWNT 311
           V  S D   +        +  ++ 
Sbjct: 285 VNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.5 bits (181), Expect = 2e-15
 Identities = 29/313 (9%), Positives = 75/313 (23%), Gaps = 22/313 (7%)

Query: 77  NYALSGSWDKTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQI-VSSSRDKTIKLW 133
           +Y L+ +    L + D       +     D     +    +   R    + ++ +++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 134 NT----LAHCKFTIVEDGHSDWVSCVRFSPNHQ---------NPIIVSAGWDRMVKVWNL 180
           +               +     +     SP+ +            +              
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 181 TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240
                +         +  +  + DGS     G+D++ M      G  +            
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP--EAGTLVEDKPIQSWEAET 179

Query: 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS 300
              P+      + + S  +                T   +    +L++        +   
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT---AYRTGLLTMDLETGEMAMREV 236

Query: 301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF 360
                      +   K             +L  +   +     P    S+  STDG T++
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVW 295

Query: 361 AGYSDNTIRVWQV 373
            G +   +  +  
Sbjct: 296 LGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.5 bits (137), Expect = 6e-10
 Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 5/127 (3%)

Query: 105 HTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP 164
                       D      ++    +   +                +      +P     
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-- 253

Query: 165 IIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND 224
              + G   +++ ++L      I          +V VS DGS    GG   +   +D   
Sbjct: 254 --RAFGAYNVLESFDLEKNAS-IKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310

Query: 225 GKHLHTL 231
            +    +
Sbjct: 311 LEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 5/109 (4%)

Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWK----LTRDDTNYGVPQKRLKGHSHFI 67
           ++   G +              +         +     L   D       KR+    H  
Sbjct: 224 MDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSY 282

Query: 68  SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV 116
             + +S+DG+    G     L  +D    +   + +      +S+A   
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVR 331

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 9e-17
 Identities = 61/294 (20%), Positives = 96/294 (32%), Gaps = 47/294 (15%)

Query: 58  KRLKGHSHFISDIV-LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV 116
           +R+   S     +  L  D    +SG  D T+++WD    +  R    HT  VL + +  
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 117 D--------------------------------------NRQIVSSSRDKTIKLWNTLAH 138
                                                  N  +V+ S+D++I +W+    
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM--A 123

Query: 139 CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNT 198
               I                +  +  IVSA  DR +KVWN + C+     +GH   +  
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA- 182

Query: 199 VTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRT 258
             +     L  SG  D    LWD+  G  L  L  ++ +       N+       D    
Sbjct: 183 -CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 259 LQ--KSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWN 310
           +    + L                    V  + F  D  QIVSSS D TI +W+
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 48/262 (18%), Positives = 84/262 (32%), Gaps = 51/262 (19%)

Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTR------------- 48
              TL+ +  L GH G V  +  + +   T  S S      +                  
Sbjct: 41  DKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH 100

Query: 49  --------------------DDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL 88
                               D  +      R     H  +  V+  D  Y +S S D+T+
Sbjct: 101 LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI 160

Query: 89  RLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGH 148
           ++W+ +  +  R    H + +  + +   +R +VS S D TI+LW+              
Sbjct: 161 KVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR-----V 213

Query: 149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS---------GHTGYLNTV 199
            +    +       N  IVS  +D  +KVW+L         +          H+G +   
Sbjct: 214 LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF-- 271

Query: 200 TVSPDGSLCASGGKDMNAMLWD 221
            +  D     S   D   ++WD
Sbjct: 272 RLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 34/228 (14%)

Query: 147 GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS 206
             S  V C+++        IVS   D  +K+W+    + K   +GHTG +  +       
Sbjct: 13  ETSKGVYCLQYDDQK----IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68

Query: 207 LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLIL 266
           +  S    +     +  +  +        ++     +           I+        + 
Sbjct: 69  ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA--------VW 120

Query: 267 YPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKK 326
              +   +      +           D++ IVS+S D+TIK+W           +  T +
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW-----------NTSTCE 169

Query: 327 MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
            V  L           +             + + +G SDNTIR+W + 
Sbjct: 170 FVRTL-----------NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 77.6 bits (189), Expect = 1e-16
 Identities = 43/306 (14%), Positives = 82/306 (26%), Gaps = 24/306 (7%)

Query: 70  IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT 129
           +  +  G+     +   ++    + +   T  + +H+        S       S      
Sbjct: 23  LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 130 IKLW-NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN 188
           +++W  T             S  V  + +    +    V  G +R   V+         N
Sbjct: 82  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 141

Query: 189 HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSF 248
            +G    +N+V   P        G D N +           +              N   
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201

Query: 249 QKIKLDISRTLQKSNLILYPINHGKMETPFFSLFR---DVLSVAFSVDNRQIVSSSRDKT 305
                            +     G  E            V  + +S D  +I S+S DKT
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261

Query: 306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSD 365
           IK+W           ++ T K+ + +                L + W    Q L +  ++
Sbjct: 262 IKIW-----------NVATLKVEKTI------PVGTRIEDQQLGIIW--TKQALVSISAN 302

Query: 366 NTIRVW 371
             I   
Sbjct: 303 GFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 33/256 (12%), Positives = 64/256 (25%), Gaps = 15/256 (5%)

Query: 2   STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK 61
              +L        H+   T   T+P       S      + IW          + +  + 
Sbjct: 44  PVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIW---DTTQTTHILKTTIP 99

Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
             S  + DI   S+     +    +            T       +     +      + 
Sbjct: 100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 159

Query: 122 VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL- 180
                              F                  N    +  S G D  + ++N  
Sbjct: 160 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 219

Query: 181 ------TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-- 232
                       + +  H+G +  +T SPDG+  AS   D    +W++   K   T+   
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279

Query: 233 --HNDIITALCFSPNR 246
               D    + ++   
Sbjct: 280 TRIEDQQLGIIWTKQA 295

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 30/268 (11%), Positives = 67/268 (25%), Gaps = 21/268 (7%)

Query: 109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS 168
            + +  +    +I   +   ++     +     T +   HS   +  + SP+       S
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVP-VGSLTDTEIYTEHSHQTTVAKTSPSGY--YCAS 75

Query: 169 AGWDRMVKVW--NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGK 226
                 V++W    T   LK      +G +  ++   +    A+ G+             
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 227 HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVL 286
                       A+     +  +                +   +       F        
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPF-------------RIISGSDDNTVAIFEGPPFKFK 182

Query: 287 SVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPM 346
           S                      +T       + +            D +     +    
Sbjct: 183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 242

Query: 347 CLSLAWSTDGQTLFAGYSDNTIRVWQVS 374
            L   WS DG  + +  +D TI++W V+
Sbjct: 243 GL--TWSPDGTKIASASADKTIKIWNVA 268

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 1/91 (1%)

Query: 133 WNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH 192
             T             +   S    + +     I SA  D+ +K+WN+   K++      
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279

Query: 193 TGYLNTVT-VSPDGSLCASGGKDMNAMLWDL 222
           T   +    +        S   +      + 
Sbjct: 280 TRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 6/65 (9%)

Query: 30  DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIV-LSSDGNYALSGSWDKTL 88
             I S S D T+ IW     +      +K +   +      + +       +S S +  +
Sbjct: 251 TKIASASADKTIKIW-----NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

Query: 89  RLWDL 93
              + 
Sbjct: 306 NFVNP 310

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 78.0 bits (190), Expect = 1e-16
 Identities = 41/362 (11%), Positives = 88/362 (24%), Gaps = 52/362 (14%)

Query: 30  DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD--KT 87
           D I   SR    I                        I  +    D   A          
Sbjct: 16  DLIAFVSRGQAFIQDVSGT--------YVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDF 67

Query: 88  LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI---- 143
           L ++D   GK   +FE++  +V ++    + +  V ++    I   +        I    
Sbjct: 68  LGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126

Query: 144 ---VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVT 200
              + D      S                   + + V+++   +     +    +     
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM-EGRKIFAATTENSHDYAPA 185

Query: 201 VSPDGSLCASGGKDMNAMLWDLNDGKHLHTL--------VHNDIITALCFSPNRSF-QKI 251
              D                D         +        +           P     +  
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 252 KLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
           + D++   ++S+ I       +M  P  S                   +     +  +  
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY-- 303

Query: 312 LAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVW 371
                    D++T+K V E++ ++              L  S D +T+     D  I  +
Sbjct: 304 ---------DVKTRK-VTEVKNNL------------TDLRLSADRKTVMVRKDDGKIYTF 341

Query: 372 QV 373
            +
Sbjct: 342 PL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 69.5 bits (168), Expect = 9e-14
 Identities = 16/236 (6%), Positives = 45/236 (19%), Gaps = 22/236 (9%)

Query: 12  LNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK---GHSHFIS 68
                  +T    +             +      + +    Y +  +++      +    
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 69  DIVLSSDGNYALSGSWDKTLRLWDLAAGKTT-------RRFEDHTKDVLSVAFSVDNRQI 121
                +D       S+       D      +                         +   
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242

Query: 122 VSSSRDKTIKLWNTLAHC------KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175
            +   D       +          +  I  +      S               A    ++
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA--YYQGAPEKGVL 300

Query: 176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
             +++   K+          L  + +S D         D     + L   +   T+
Sbjct: 301 LKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 28/333 (8%), Positives = 84/333 (25%), Gaps = 30/333 (9%)

Query: 14  GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS 73
                +  +                    +              ++ + +   +  + + 
Sbjct: 40  PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR----TGKAEKFEENLGNVFAMGVD 94

Query: 74  SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW 133
            +G +A+  +    +   DL  GK T         +     S ++R I      K  +  
Sbjct: 95  RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 154

Query: 134 NTLA------HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI 187
             +         +   +    ++       + +  +  +    +  +    +        
Sbjct: 155 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF 214

Query: 188 NHS-------GHTGYLNTVTVSPDGSLCASG-----GKDMNAMLWDLNDGKHLHTLVHND 235
                        G  N   + P      +G          +   +++ G +   +    
Sbjct: 215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274

Query: 236 IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR 295
            I       +  F           +K  L+ Y +   K+      +  ++  +  S D +
Sbjct: 275 SILIYSVPVHGEFAAYYQGAP---EKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRK 327

Query: 296 QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMV 328
            ++    D  I  +          V+ + + +V
Sbjct: 328 TVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 64.9 bits (156), Expect = 3e-12
 Identities = 15/126 (11%), Positives = 31/126 (24%), Gaps = 5/126 (3%)

Query: 11  TLNGHNGWVTQIATNPKF-PDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISD 69
            +    G        P+           ++          D         L+      S 
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281

Query: 70  IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKT 129
            V      Y         L  +D+     TR+  +   ++  +  S D + ++    D  
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGK 337

Query: 130 IKLWNT 135
           I  +  
Sbjct: 338 IYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 10/100 (10%)

Query: 11  TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
            L       +                    L+ + +           +++    + ++D+
Sbjct: 271 PLESSILIYSVPVHGEFA-AYYQGAPEKGVLLKYDVKT---------RKVTEVKNNLTDL 320

Query: 71  VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL 110
            LS+D    +    D  +  + L   +  R  E   + ++
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 27/310 (8%), Positives = 63/310 (20%), Gaps = 25/310 (8%)

Query: 74  SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLW 133
            DG+     S  +   + D++     +        +  V    D +        +   L 
Sbjct: 13  LDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLG 69

Query: 134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH---- 189
                       + +   V  +    N +  ++ +  ++ M          +        
Sbjct: 70  IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129

Query: 190 ----SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPN 245
               +            P       G       ++D+   K       N    A  F  +
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 189

Query: 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD-VLSVAFSVDNRQIVSSSRDK 304
                     S       ++L        +     L             +    +   D 
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249

Query: 305 TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS 364
                 +        VD    +M+  L   ++  S                         
Sbjct: 250 NDMYKRSSPIN----VDPGDYRMIIPLESSILIYS---------VPVHGEFAAYYQGAPE 296

Query: 365 DNTIRVWQVS 374
              +  + V 
Sbjct: 297 KGVLLKYDVK 306

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 74.6 bits (181), Expect = 1e-15
 Identities = 37/319 (11%), Positives = 98/319 (30%), Gaps = 26/319 (8%)

Query: 57  QKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFED-HTKDVLSVAFS 115
            +   GH+  I+ +  S+DG    S   +  +  WD++ G + R F D H   +  +   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT- 63

Query: 116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175
                + + S D  +K+         +     +      +  + +    I V+A +  + 
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
              +    ++ I+++     L+                  + +      G  +  +    
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ------DSKVHVYKLSGASVSEVKTIV 177

Query: 236 IITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR 295
               +      +     +   ++ +     +           +      V  V++S DN 
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237

Query: 296 QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD 355
           ++ + S D ++ +W           ++        +          A     ++     +
Sbjct: 238 RLATGSLDNSVIVW-----------NMNKPSDHPIII-------KGAHAMSSVNSVIWLN 279

Query: 356 GQTLFAGYSDNTIRVWQVS 374
             T+ +   D+ I+ W V 
Sbjct: 280 ETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 2e-10
 Identities = 41/307 (13%), Positives = 92/307 (29%), Gaps = 16/307 (5%)

Query: 7   QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL-KGHSH 65
            +     GHN  +T ++++     T+ S   +  +  W     D + G+  +     H+ 
Sbjct: 3   SIDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSW-----DISTGISNRVFPDVHAT 56

Query: 66  FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS 125
            I+ I  +S G+       D    +    +G  + +   +      +  +V     ++ +
Sbjct: 57  MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

Query: 126 RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL 185
                   +   +    + E   S   SCV  S + Q   +        V   +  +   
Sbjct: 117 ACY----KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE 172

Query: 186 KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPN 245
                      +    +    L A+            N+ +  HT         +     
Sbjct: 173 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232

Query: 246 RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLF--RDVLSVAFSVDNRQIVSSSRD 303
                     S     +++I++ +N                 ++    ++   IVS+ +D
Sbjct: 233 SPDNVRLATGSL---DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 304 KTIKLWN 310
             IK WN
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 1e-06
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 15  HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS 74
            +       +       + + S DN++I+W +   +     P      H+    + V+  
Sbjct: 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNM---NKPSDHPIIIKGAHAMSSVNSVIWL 278

Query: 75  DGNYALSGSWDKTLRLWDL 93
           +    +S   D  ++ W++
Sbjct: 279 NETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.5 bits (82), Expect = 0.003
 Identities = 6/40 (15%), Positives = 19/40 (47%)

Query: 272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT 311
           G ++   +   + + +++ S D + + S+  +  I  W+ 
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.3 bits (183), Expect = 1e-15
 Identities = 55/437 (12%), Positives = 122/437 (27%), Gaps = 126/437 (28%)

Query: 11  TLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKL-TRDDTNYGVPQKRLKGHSHFISD 69
               H+  +  ++    F    +SCS D  L +W     D+ N          H   +  
Sbjct: 9   AGKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 70  IVL-------SSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL----------SV 112
           + +       + +     + S+   L  + +     T++      D+L          ++
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 113 AFSVD-----NRQIVSSSRDKTIKLWN-----------------TLAHCKFTIVEDGHSD 150
            +        + ++V++    T  +W                  TL            S 
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWN------LTNCKLKINHSGHTGYLNTVTVSPD 204
           + + V  S      +I +   +  V++        L N + + +   ++  + +V  SP 
Sbjct: 186 FATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 205 GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNL 264
           GSL A      +     L + +    +    +                            
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSV---------------------------- 274

Query: 265 ILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLET 324
              P +  +     F+    V+S++F+     + S+  D  ++ W           D++T
Sbjct: 275 ---PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW-----------DVKT 320

Query: 325 KKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY--------------------- 363
           K+ +  L                  LA    G +L                         
Sbjct: 321 KERITTLN-----MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE 375

Query: 364 ------SDNTIRVWQVS 374
                  D +IR ++ +
Sbjct: 376 SLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 2e-12
 Identities = 32/321 (9%), Positives = 80/321 (24%), Gaps = 51/321 (15%)

Query: 98  TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT-----LAHCKFTIVEDGHSDWV 152
           T    + H  D+ SV+    N   VS S D  +K+W+            +     H   +
Sbjct: 6   TANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 153 SCVRFSP-----NHQNPIIVSAGWDRMVKVWNLTNCKLK----------INHSGHTGYLN 197
             V           +  ++ +  +   +  + +T               ++         
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 198 TVTVSPDG-----SLCASGGKDMNAMLWDLNDGKHLHTLV-------------------H 233
            +               +        +W  +        +                    
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP 183

Query: 234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD 293
           +   T++  S          + +  + + + +    N     +   +    + SV FS  
Sbjct: 184 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRSVKFSPQ 242

Query: 294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWS 353
              +  +    +              +   +               +       +SL+++
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW----VMSLSFN 298

Query: 354 TDGQTLFAGYSDNTIRVWQVS 374
             G+TL +   D  +R W V 
Sbjct: 299 DSGETLCSAGWDGKLRFWDVK 319

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.1 bits (180), Expect = 3e-15
 Identities = 35/351 (9%), Positives = 83/351 (23%), Gaps = 44/351 (12%)

Query: 67  ISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSS 124
           IS    + D         +  + +++ +  K       ++H   V  V ++ D+ +IV+ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 125 SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK 184
             D+   +W       +           +                   R++ +       
Sbjct: 70  GTDRNAYVWTL-KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 185 LKINHSGHTGY----LNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240
                          + ++   P+  L A+G  D    ++     +           + +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 241 CFSPNRSFQKIKLDISRTL-------------QKSNLILYPINHGKMETPFFSLFRDVLS 287
            F                +               S + L   +         S    +L+
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248

Query: 288 VAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDV-----------V 336
           V F  ++  + +      +      A  K +             R               
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308

Query: 337 SQSTKADPPMCL---------SLAWSTDGQT----LFAGYSDNTIRVWQVS 374
           S    A     L          ++  + G+           D  + +W V 
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.3 bits (170), Expect = 6e-14
 Identities = 42/336 (12%), Positives = 86/336 (25%), Gaps = 40/336 (11%)

Query: 1   MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
            S         L  HNG VT +   P   + I++C  D    +W L        +   R+
Sbjct: 36  KSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 94

Query: 61  KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNR 119
              +  +                                    +     VLS+ +  ++ 
Sbjct: 95  NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 154

Query: 120 QIVSSSRDKTIKLWNT-----------------LAHCKFTIVEDGHSDWVSCVRFSPNHQ 162
            + + S D   ++++                  +   +          WV  V    +  
Sbjct: 155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV--CFSAN 212

Query: 163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL 222
              +     D  V + +          +  T  L  VT   + SL A+G  D   +L+  
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY 271

Query: 223 NDGKHLHTLV----HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPF 278
           +      +           +    +    FQ +    S     +        H       
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN----- 326

Query: 279 FSLFRDVLSVAFSVD----NRQIVSSSRDKTIKLWN 310
                 V  ++          Q  ++  D  + +W+
Sbjct: 327 -----SVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.1 bits (154), Expect = 6e-12
 Identities = 22/186 (11%), Positives = 56/186 (30%), Gaps = 11/186 (5%)

Query: 1   MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
                 +L    +   GWV  +         +   S D+T+ +      D +  +    L
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVC-FSANGSRVAWVSHDSTVCLA-----DADKKMAVATL 239

Query: 61  KGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ 120
              +  +  +   ++ +   +G  D    L+   +      F          +      +
Sbjct: 240 ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 298

Query: 121 IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI--IVSAGWDRMVKVW 178
               + DK      + A      ++  H + VS +      +       + G D  + +W
Sbjct: 299 ERFQNLDKKASSEGSAAA--GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 179 NLTNCK 184
           ++ + +
Sbjct: 357 DVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 9/171 (5%)

Query: 60  LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNR 119
                 ++  +  S++G+     S D T+ L D             T  +L+V F  ++ 
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 256

Query: 120 QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWN 179
            + +      +      A  K +    G  D     + S             D+      
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFG--GRLDVPK--QSSQRGLTARERFQNLDKKASSEG 312

Query: 180 LTNCKLKINHSGHTGYLNTVTVSPDGSLC----ASGGKDMNAMLWDLNDGK 226
                     S H   ++ ++V   G        + G D    +WD+   +
Sbjct: 313 SAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.3 bits (175), Expect = 9e-15
 Identities = 35/324 (10%), Positives = 93/324 (28%), Gaps = 33/324 (10%)

Query: 66  FISDIVLSSDGNYALSGSWDKT-LRLWDLAAGKTTRRFE---DHTKDVLSVAFS--VDNR 119
           F + +      N           +R  D    K     +     +  V +V FS    ++
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 120 QIVSSSRDKTIKLWNTLAHCKFTI-------VEDGHSDWVSCVRFSPNHQNPIIVSAGWD 172
            + S      + +W      +               +  +S + +    +   +V  G D
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV 232
                 +  +       SGH+  +N   +     + +    D  ++++            
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 233 HNDI---ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA 289
                          +    +  + +    + S          K         +  +   
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 290 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLS 349
             +D+++  +   D TI++W           D+ T K V++   D      +      + 
Sbjct: 259 SWLDSQKFATVGADATIRVW-----------DVTTSKCVQKWTLD-----KQQLGNQQVG 302

Query: 350 LAWSTDGQTLFAGYSDNTIRVWQV 373
           +  + +G+ + +   D T+  +++
Sbjct: 303 VVATGNGR-IISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 1e-08
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 13  NGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVL 72
           +    +V  +  +P   + +++   D  +  +        +    +  +         + 
Sbjct: 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD--GKSGEFLKYIEDDQEPVQGGIFALS 259

Query: 73  SSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV---DNRQIVSSSRDKT 129
             D     +   D T+R+WD+   K  +++    + + +    V    N +I+S S D T
Sbjct: 260 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319

Query: 130 IKLWN 134
           +  + 
Sbjct: 320 LNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 33/313 (10%), Positives = 84/313 (26%), Gaps = 21/313 (6%)

Query: 15  HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIV--- 71
              + T ++ +P   + I      +  +  +   D  +   P  +  GH   +   V   
Sbjct: 16  QRNFTTHLSYDPT-TNAIAYPCGKSAFV--RCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 72  LSSDGNYALSGSWDKTLRLWDLAAGKTTRRF--------EDHTKDVLSVAFSVDNRQIVS 123
                 Y  SG     + +W     K +           +     +  +++  + R++  
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 124 SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC 183
               +             ++ E                +    ++ G D  V  +     
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192

Query: 184 KLKINHS---GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITAL 240
           K   +         ++  V  SPD             +             + +D     
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252

Query: 241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV---DNRQI 297
                 S+   +   +     + + ++ +   K    +    + + +    V    N +I
Sbjct: 253 GGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311

Query: 298 VSSSRDKTIKLWN 310
           +S S D T+  + 
Sbjct: 312 ISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 5e-08
 Identities = 36/259 (13%), Positives = 67/259 (25%), Gaps = 15/259 (5%)

Query: 2   STETLQLRGTLNGHNG-WVTQIATNPKFPDTIL-SCSRDNTLIIWKLTRDD---TNYGVP 56
               +       GH    VT +  +P      L S      +I+W  T D    +     
Sbjct: 48  GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107

Query: 57  QKRLKGHSHFISDIVLSSDGNYALSGSW--DKTLRLWDLAAGKTTRRFEDHTKDVLSVAF 114
           +   +  +  ISDI    +G          D         +G +      H++ + +   
Sbjct: 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167

Query: 115 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED---GHSDWVSCVRFSPNHQN--PIIVSA 169
                    +  D    ++      KF+  +        +V  V FSP+       + S 
Sbjct: 168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227

Query: 170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH 229
                    +    K   +               D    A+ G D    +WD+   K + 
Sbjct: 228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ 287

Query: 230 TLV---HNDIITALCFSPN 245
                        +     
Sbjct: 288 KWTLDKQQLGNQQVGVVAT 306

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 23/218 (10%), Positives = 55/218 (25%), Gaps = 4/218 (1%)

Query: 9   RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFIS 68
           +       G ++ I+ + +     +     +   ++       + G      +  +    
Sbjct: 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167

Query: 69  DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK 128
                               +        + R        V  V FS D+ + V +    
Sbjct: 168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227

Query: 129 TIK-LWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI 187
                ++  +      +ED        +       +    + G D  ++VW++T  K   
Sbjct: 228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ 287

Query: 188 NHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDL 222
             +     L    V           S   D     ++L
Sbjct: 288 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.9 bits (165), Expect = 4e-13
 Identities = 35/363 (9%), Positives = 88/363 (24%), Gaps = 55/363 (15%)

Query: 34  SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL 93
           +      + +      D +    +  L    + +    LS+ G Y      D  + + DL
Sbjct: 37  TLRDAGQIALI-----DGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDL 90

Query: 94  AAGKTTRRFE-----DHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTI---- 143
              + T   E     +      S     +++  I  +       + +        I    
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150

Query: 144 ------VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK-LKINHSGHTGYL 196
                  E      V+ +  S       IV+      + + + T+   LK        +L
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPE-FIVNVKETGKILLVDYTDLNNLKTTEISAERFL 209

Query: 197 NTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDI 255
           +   +        +     N ++        L  +              N          
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269

Query: 256 SRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC 315
           + +    + +      G            +L    ++    +   +   +  L+      
Sbjct: 270 ATSHMGDDSV---ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY------ 320

Query: 316 KFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV 375
                               V  +   +  +  S+A   D + +    SD   +   ++ 
Sbjct: 321 --------------------VDATLNPEAEISGSVA-VFDIKAMTGDGSDPEFKTLPIAE 359

Query: 376 TSR 378
            + 
Sbjct: 360 WAG 362

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (142), Expect = 3e-10
 Identities = 31/321 (9%), Positives = 71/321 (22%), Gaps = 26/321 (8%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             T +++  L+     V     +      +    RD  + +  L   +       K    
Sbjct: 49  GSTYEIKTVLDTGYA-VHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 106

Query: 63  HSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ- 120
                +  +   +  YA+    W     + D    +  +             +  + R  
Sbjct: 107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166

Query: 121 -----------IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA 169
                      IV+      I L +          E     ++       +H+   I +A
Sbjct: 167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY-FITAA 225

Query: 170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLH 229
                + V +    KL        G         +      G          + D     
Sbjct: 226 NARNKLVVIDTKEGKLVAIE-DTGGQTPHPGRGANFVHPTFGPVWAT---SHMGDDSVAL 281

Query: 230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA 289
                +      +   +           +L       +P +         +   ++    
Sbjct: 282 IGTDPEGHPDNAW---KILDSFPALGGGSLFIKT---HPNSQYLYVDATLNPEAEISGSV 335

Query: 290 FSVDNRQIVSSSRDKTIKLWN 310
              D + +     D   K   
Sbjct: 336 AVFDIKAMTGDGSDPEFKTLP 356

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 22/139 (15%)

Query: 16  NGWVTQIATNP-KFPDTILSCSRD----NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDI 70
           +  V  I T+P   PD                ++  T  ++ Y      L   +  IS  
Sbjct: 276 DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE-ISGS 334

Query: 71  VLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----- 125
           V   D         D   +   +A         +    V+   F+ D  ++  S      
Sbjct: 335 VAVFDIKAMTGDGSDPEFKTLPIA---EWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKD 391

Query: 126 --------RDKTIKLWNTL 136
                    DKT++L + +
Sbjct: 392 QESALVVVDDKTLELKHVI 410

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 37/322 (11%), Positives = 79/322 (24%), Gaps = 26/322 (8%)

Query: 73  SSDGNYAL-----SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI------ 121
           + D            +      + D  AG+     +     + +   + D   I      
Sbjct: 10  APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTV 67

Query: 122 ----VSSSRDKTIKLWNTLAHCKFTIVEDGHS------DWVSCVRFSPNHQNPIIVSAGW 171
                   R   +++++ +       +E   +       +      +P+ +  +      
Sbjct: 68  FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 127

Query: 172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL 231
              V V +L     K        Y    T      +    G             +  HT 
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187

Query: 232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFS 291
           V +     L   P  S +  +L       K + I       K      +L     +  + 
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247

Query: 292 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA 351
               Q V+  R             ++         +V + +        +       S+ 
Sbjct: 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSIN 306

Query: 352 WSTDGQTLF--AGYSDNTIRVW 371
            S D + L       D T+ + 
Sbjct: 307 VSQDEKPLLYALSTGDKTLYIH 328

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.2 bits (144), Expect = 1e-10
 Identities = 22/217 (10%), Positives = 54/217 (24%), Gaps = 21/217 (9%)

Query: 10  GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGV-PQKRLKGHSHFIS 68
                           P  PDT     RD +L       + T      +         I+
Sbjct: 139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN 198

Query: 69  DIVLSSDGNYALSGSWDKTLRLWDLAAGKTT--RRFEDHTKDVLSVAFSVDNRQIVSSSR 126
               S      +  ++   +   DL++G        E  T+   +  +     Q V+  R
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258

Query: 127 DKTIKLWNTLAHCKFTIVEDG------------------HSDWVSCVRFSPNHQNPIIVS 168
                        ++                            +  +  S + +  +   
Sbjct: 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318

Query: 169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG 205
           +  D+ + + +  + +   + +        +T +  G
Sbjct: 319 STGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.9 bits (138), Expect = 5e-10
 Identities = 30/263 (11%), Positives = 66/263 (25%), Gaps = 42/263 (15%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKG 62
             TL     +   +     + T P             TL+ ++ +       V  +    
Sbjct: 85  PVTLLPTADIELPDAPRFLVGTYP---WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141

Query: 63  HSHF-------------ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDV 109
                             +  +   DG+ A      +           T     +    +
Sbjct: 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT----HTEVFHPEDEFLI 197

Query: 110 LSVAFSVDNRQIVSSSRDKTIKLWNTLAH-CKFTIVEDGHSDWVSCVRFSPNHQNPI--- 165
              A+S    ++V  +    I   +  +   KF    +  ++      + P     +   
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257

Query: 166 ---------------IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS--LC 208
                                 R V V +    +  +        ++++ VS D    L 
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEMGHEIDSINVSQDEKPLLY 316

Query: 209 ASGGKDMNAMLWDLNDGKHLHTL 231
           A    D    + D   G+ L ++
Sbjct: 317 ALSTGDKTLYIHDAESGEELRSV 339

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.5 bits (137), Expect = 8e-10
 Identities = 31/321 (9%), Positives = 76/321 (23%), Gaps = 56/321 (17%)

Query: 34  SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL----------SGS 83
             +      +      D   G     + G   F+ + V++ DG++             G 
Sbjct: 23  HFAAVTQQFVI-----DGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGE 75

Query: 84  WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI 143
               + ++D      T   E        V        +    +      ++         
Sbjct: 76  RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD 135

Query: 144 VEDG---------------HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN 188
           +E                  +   +      +      V+ G +   ++ +      ++ 
Sbjct: 136 LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL-AKVAFGTEGTPEITHT-----EVF 189

Query: 189 HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL-------------HTLVHND 235
           H      +N    S                  DL+ G                       
Sbjct: 190 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249

Query: 236 IITALCFSPNRSFQKIKLDISRTLQ---KSNLILYPINHGKMETPFFSLFRDVLSVAFSV 292
               + +        + +D     +    S  ++            F +  ++ S+  S 
Sbjct: 250 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQ 309

Query: 293 DNRQ--IVSSSRDKTIKLWNT 311
           D +      S+ DKT+ + + 
Sbjct: 310 DEKPLLYALSTGDKTLYIHDA 330

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 65.7 bits (159), Expect = 2e-12
 Identities = 41/368 (11%), Positives = 93/368 (25%), Gaps = 41/368 (11%)

Query: 34  SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDL 93
           +      + +      D +     K +      +    +S+ G Y L    D  + + DL
Sbjct: 37  TLRDAGQIALV-----DGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL 90

Query: 94  AAGK-----TTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTIVEDG 147
            A +       +   +      S     ++R  I  +       + +        IV   
Sbjct: 91  WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 150

Query: 148 HSDWVSCVRFSPNHQNPIIVSAGWDRMVK----------VWNLTNCKLKINHSGHTGYLN 197
                +           II S      +           V       L +   G   +L 
Sbjct: 151 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210

Query: 198 TVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISR 257
                       +   + N +    +  + L  LV            N    K     S 
Sbjct: 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST 270

Query: 258 TLQKSNLI--------LYPINHGKMETPFFSLFRDVLSVAFSVDNRQI-VSSSRDKTIKL 308
           +      I         +P    K            L +     +  + V ++ +   ++
Sbjct: 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 330

Query: 309 WNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDG-QTLFAGYS--- 364
             ++A     + DL+      ++ P              +   ++  G +  F+ ++   
Sbjct: 331 SQSVA-----VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 385

Query: 365 -DNTIRVW 371
             + + V 
Sbjct: 386 DSSALVVV 393

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 60.4 bits (145), Expect = 1e-10
 Identities = 35/332 (10%), Positives = 85/332 (25%), Gaps = 18/332 (5%)

Query: 55  VPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF 114
           V  +          D+       ++++      + L D  + K  +  +     V     
Sbjct: 15  VKPEDRPKKQLNDLDL----PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRM 69

Query: 115 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE----DGHSDWVSCVRFSPNHQNPIIVSAG 170
           S   R ++   RD  I + +  A     + E           S            I  A 
Sbjct: 70  SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED-RYTIAGAY 128

Query: 171 WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGKHLH 229
           W     + +    + K   S     ++T T  P+  +       +    + ++ +   + 
Sbjct: 129 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 188

Query: 230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVA 289
            + + DI      S   +          + +         N   +          ++ V 
Sbjct: 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 248

Query: 290 FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLS 349
            +    +  +    K   +W+T      +I  + T                +      L 
Sbjct: 249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF 308

Query: 350 LAWSTDGQTLFA-------GYSDNTIRVWQVS 374
           +        L+             ++ V+ + 
Sbjct: 309 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 340

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 4e-12
 Identities = 34/323 (10%), Positives = 90/323 (27%), Gaps = 46/323 (14%)

Query: 56  PQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 115
             K + GH+  I+ + ++      +SGS+D  +  W  ++       +DH+  ++S+  S
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55

Query: 116 VDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMV 175
                             +        +      ++ S  + +  + +        D  +
Sbjct: 56  KAQE------------YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 103

Query: 176 KVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND 235
            +       +  +   ++            ++    G  +        +           
Sbjct: 104 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163

Query: 236 IITALCFSPN-----RSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAF 290
             + +  SP+           K+ +     +                      +  +   
Sbjct: 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223

Query: 291 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSL 350
            ++   + + S D  I +++                     RP  + ++  A      +L
Sbjct: 224 EIEEDLVATGSLDTNIFIYSV-------------------KRPMKIIKALNAHKDGVNNL 264

Query: 351 AWSTDGQTLFAGYSDNTIRVWQV 373
            W T   TL +  +D  I+ W V
Sbjct: 265 LWETPS-TLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 4e-10
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 36/313 (11%)

Query: 7   QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHF 66
           ++  T++GHN  +T +  NP     ++S S D  ++ W                + HS+ 
Sbjct: 4   EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSS----------SSMHQDHSNL 48

Query: 67  ISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSR 126
           I  +  S    Y+     D                  +        + + D    V ++ 
Sbjct: 49  IVSLDNSKAQEYSSISWDDTLKVNG--------ITKHEFGSQPKVASANNDGFTAVLTND 100

Query: 127 DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK 186
           D  + L +       +               S +     +     + +            
Sbjct: 101 DDLLILQSFTGDIIKS-----VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF 155

Query: 187 INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR 246
              +      + +++SP  +  A+G      +L+DL   +   +            S   
Sbjct: 156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215

Query: 247 SFQKIKLDISRTLQK------SNLILYPINHGKMETPFFSLFRD-VLSVAFSVDNRQIVS 299
           + +    +             +N+ +Y +          +  +D V ++ +   +  +VS
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVS 274

Query: 300 SSRDKTIKLWNTL 312
           S  D  IK WN +
Sbjct: 275 SGADACIKRWNVV 287

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.5 bits (153), Expect = 8e-12
 Identities = 29/343 (8%), Positives = 71/343 (20%), Gaps = 44/343 (12%)

Query: 62  GHSHFISDIVLSSDGN---YALSGSWDKTLRLW--DLAAGKTTRRFEDHTKDVLSVAFSV 116
                  D    +        L   +  T   W      G T          +       
Sbjct: 17  ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSL--AVAGH 74

Query: 117 DNR----------QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC------VRFSPN 160
                        +     R   +++++ +       +E   +   S       +    +
Sbjct: 75  SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134

Query: 161 HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNT-------VTVSPDGSLCASGGK 213
               ++            ++            + +             S   SL AS   
Sbjct: 135 SAC-LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLA 193

Query: 214 DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGK 273
              A    +       T   N    A   +           +            P     
Sbjct: 194 AAPAAAGIVGAQ---CTGAQNCSSQAAQANYPGML------VWAVASSILQGDIPAAGAT 244

Query: 274 METPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRP 333
           M+           +  F     Q+V+  ++    +  T+ H +  +   E    V     
Sbjct: 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304

Query: 334 DVVSQSTKADPPMCLSLAWSTDGQTLF--AGYSDNTIRVWQVS 374
                 +        ++  + DG +           + ++  +
Sbjct: 305 QTSGPISNGHDSD--AIIAAQDGASDNYANSAGTEVLDIYDAA 345

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.1 bits (152), Expect = 1e-11
 Identities = 21/328 (6%), Positives = 58/328 (17%), Gaps = 38/328 (11%)

Query: 17  GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRD-DTNYGVPQKRLKGHSHFISD----IV 71
                     +     L      T   W          G         +          +
Sbjct: 22  SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFAL 81

Query: 72  LSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVL-------SVAFSVDNRQI-VS 123
            S+    +  G     + ++D          E               +     +  +   
Sbjct: 82  ASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFF 141

Query: 124 SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTN- 182
                     +          +D  +   SC    P       + +    +         
Sbjct: 142 LFGSSAAAGLSV-----PGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196

Query: 183 ----CKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDI-- 236
                                  +  G L  +    +               +  N+   
Sbjct: 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR 256

Query: 237 -----------ITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDV 285
                      + A   + +             L  +             +   S   D 
Sbjct: 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDS 316

Query: 286 LSVAFSVDNRQ--IVSSSRDKTIKLWNT 311
            ++  + D       +S+  + + +++ 
Sbjct: 317 DAIIAAQDGASDNYANSAGTEVLDIYDA 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.9 bits (123), Expect = 6e-08
 Identities = 14/198 (7%), Positives = 46/198 (23%), Gaps = 22/198 (11%)

Query: 3   TETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG-VPQKRLK 61
                        + +      +P    T    S   +L    L       G V  +   
Sbjct: 153 VPGASDDQLTKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208

Query: 62  GHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI 121
             +        +  G    + +          A        + +     +  F     Q+
Sbjct: 209 AQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268

Query: 122 VSSSRDKTIKLWNTLAHCKFT-----------------IVEDGHSDWVSCVRFSPNHQNP 164
           V+  ++    +  T+ H +                        +      +  + +  + 
Sbjct: 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD 328

Query: 165 IIVSAGWDRMVKVWNLTN 182
              ++    ++ +++  +
Sbjct: 329 NYANSAGTEVLDIYDAAS 346

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 10/118 (8%), Positives = 34/118 (28%), Gaps = 16/118 (13%)

Query: 1   MSTETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRL 60
           +      ++  ++G+                +++  ++   I+        +     +  
Sbjct: 238 IPAAGATMKAAIDGNESGRKADNFRSAGF-QMVAKLKNTDGIMILTVEHSRSCLAAAENT 296

Query: 61  K-------------GHSHFISDIVLSSDGNYAL--SGSWDKTLRLWDLAAGKTTRRFE 103
                          + H    I+ + DG      + +  + L ++D A+ +     E
Sbjct: 297 SSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 54.5 bits (129), Expect = 6e-09
 Identities = 32/296 (10%), Positives = 81/296 (27%), Gaps = 30/296 (10%)

Query: 81  SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHC 139
           + S    + + D+ + K T        + +    S D  ++ V+++    + + +T  + 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV 199
               V  G S     V           +       + V + T+  +          L   
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGKSPLGLA 122

Query: 200 TVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTL 259
                  L  +   D    + +      ++T+        +  +P+ +            
Sbjct: 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV---------- 172

Query: 260 QKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI 319
                +    +         +          +  +   V+    K             ++
Sbjct: 173 ----YVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228

Query: 320 VDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF-AGYSDNTIRVWQVS 374
           +D  T K+   +             P    +A + DG+ ++ A    NT+ V   +
Sbjct: 229 IDTGTNKITARIPVG----------PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 53.0 bits (125), Expect = 2e-08
 Identities = 33/280 (11%), Positives = 74/280 (26%), Gaps = 15/280 (5%)

Query: 34  SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWD 92
           + S  + + +      D         +   S+     V+S DG     + +    + + D
Sbjct: 7   ANSESDNISVI-----DVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIID 60

Query: 93  LAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV 152
            A    T           S      +                ++       V        
Sbjct: 61  TA----TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK 116

Query: 153 SCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG 212
           S +  + +     +              T  K  IN          + V+PDG+      
Sbjct: 117 SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN 176

Query: 213 KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHG 272
            D  ++         +        + A       + +  K  ++   +  N +       
Sbjct: 177 FDSMSISVIDTVTNSVI---DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233

Query: 273 KMETPFFSLFRDVLSVAFSVDNRQI-VSSSRDKTIKLWNT 311
              T    +  D   +A + D +++ V+ S   T+ + +T
Sbjct: 234 NKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDT 273

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 2/90 (2%)

Query: 15  HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSS 74
                   +     P+   +   +       ++  DT       R+       + I ++ 
Sbjct: 195 TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTP 253

Query: 75  DGNYAL-SGSWDKTLRLWDLAAGKTTRRFE 103
           DG     + S+  T+ + D A    T    
Sbjct: 254 DGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 16/189 (8%), Positives = 38/189 (20%), Gaps = 2/189 (1%)

Query: 44  WKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE 103
                                     + LS DG      +             K      
Sbjct: 95  SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154

Query: 104 DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN 163
              +    +A + D  ++  ++ D                     +            + 
Sbjct: 155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKA 214

Query: 164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWDL 222
            +     +   V + +    K+             + V+PDG  +  +        + D 
Sbjct: 215 YVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDT 273

Query: 223 NDGKHLHTL 231
                  T+
Sbjct: 274 ATNTITATM 282

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 53.3 bits (126), Expect = 2e-08
 Identities = 35/309 (11%), Positives = 81/309 (26%), Gaps = 20/309 (6%)

Query: 81  SGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQI-VSSSRDKTIKLWN-TL 136
           +    + + +W+L      T  +  D    V  +  S D R + V    +  +  +    
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 137 AHCKFTIVEDGHSDWVSC-VRFSPN--HQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHT 193
                T   +         +              +AG   + ++ +     +     G  
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 194 GYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNR----SFQ 249
           G  +      + +L     K     L+ ++D  HL      ++ T     P        +
Sbjct: 129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 188

Query: 250 KIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW 309
           +    ++      ++      HG +E                      ++          
Sbjct: 189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 248

Query: 310 NTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLF-AGYSDNTI 368
            T +      V  +   + +E      +Q                 G+ L  AG   + I
Sbjct: 249 RTASLITVFSVSEDGSVLSKEGFQPTETQPR--------GFNVDHSGKYLIAAGQKSHHI 300

Query: 369 RVWQVSVTS 377
            V+++    
Sbjct: 301 SVYEIVGEQ 309

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 34/262 (12%), Positives = 73/262 (27%), Gaps = 10/262 (3%)

Query: 122 VSSSRDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNL 180
           ++S   + I +WN       T+ +       V  +  SP+ +  + V    +  V  + +
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRY-LYVGVRPEFRVLAYRI 66

Query: 181 ---TNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII 237
                       S   G L  ++    G     G  +   +     +      +V     
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126

Query: 238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQI 297
              C S N S     L +    Q    +    + G +           ++       R +
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA----QDPAEVTTVEGAGPRHM 182

Query: 298 VSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTD-G 356
           V    ++     N L          +    +E ++   +     +D      +  + D  
Sbjct: 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242

Query: 357 QTLFAGYSDNTIRVWQVSVTSR 378
                  + + I V+ VS    
Sbjct: 243 HLYACDRTASLITVFSVSEDGS 264

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 7/92 (7%)

Query: 165 IIVSAGWDRMVKVWNL-TNCKLK-INHSGHTGYLNTVTVSPDGS-LCASGGKDMNAMLWD 221
           + +++   + + VWNL     L         G +  + VSPD   L      +   + + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 222 LNDGKHLHTLVHNDII----TALCFSPNRSFQ 249
           +       T      +    T +       F 
Sbjct: 66  IAPDDGALTFAAESALPGSLTHISTDHQGQFV 97

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 71/356 (19%)

Query: 75  DGNYAL-SGSWDKTLRLWDLAAGKTTRR-------------FEDHTKDVL---------- 110
           D  Y   SG     +R+  + + +   R               + +K++L          
Sbjct: 9   DEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGD 68

Query: 111 -------SVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQ 162
                        D + + ++   +  +            I    +   +  +R     +
Sbjct: 69  CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPK 128

Query: 163 NPIIVSAGWDRMVKVWNLTNCKLKINHSGHT----------------GYLNTVTVSPDGS 206
              +       + +  + T+  L  +++  T                G L+       G 
Sbjct: 129 TNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGK 188

Query: 207 LCASGGKDMN-AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD--ISRTLQKSN 263
              S   +   A+            +V  ++          +F+ I          +  +
Sbjct: 189 YATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES 248

Query: 264 LILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTIVDL 322
                I   K          +   +  S D +  I +     T+ +          + DL
Sbjct: 249 EFTRYIPVPK----------NPHGLNTSPDGKYFIANGKLSPTVSVIAID-----KLDDL 293

Query: 323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR 378
              K    +       +        L   +   G      + D+ +  W ++   +
Sbjct: 294 FEDK----IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK 345

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 22/171 (12%), Positives = 38/171 (22%), Gaps = 30/171 (17%)

Query: 69  DIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK 128
                  GN+   G   K   +      + TR                    I +     
Sbjct: 222 IAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSP 280

Query: 129 TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP-----------IIVSAGWDRMVKV 177
           T+ +       K   + +   +    +   P                   +   D  V  
Sbjct: 281 TVSVIAI---DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337

Query: 178 WNLTNC--------------KLKINHS-GHTGYLNTVTVSPDGSLCASGGK 213
           WN+ +               KL + +  GH     T +   DG       K
Sbjct: 338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 17/163 (10%), Positives = 46/163 (28%), Gaps = 5/163 (3%)

Query: 65  HFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS 124
            F+ ++  + DG   ++      +           +        V  +AF+ +   + + 
Sbjct: 28  TFLENLASAPDGTIFVTNHEVGEIVSIT--PDGNQQIHATVEGKVSGLAFTSNGDLVATG 85

Query: 125 SRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK 184
               +I + + +             D +     +P      + +  +   + + ++    
Sbjct: 86  WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 145

Query: 185 LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH 227
             I            + S      A+G K     L+  N  K 
Sbjct: 146 GSIWLEHPML---ARSNSESVFPAANGLKRFGNFLYVSNTEKM 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.42
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.18
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.12
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.11
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.04
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.02
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.9
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.89
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.69
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.41
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.39
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.32
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.02
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.01
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.91
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.79
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.95
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.7
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.99
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.69
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.99
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.66
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.42
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.99
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.25
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.0
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.27
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.04
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.18
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	88.18
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.07
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.05
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	87.88
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	81.22
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.04

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-44  Score=311.56  Aligned_cols=295  Identities=21%  Similarity=0.326  Sum_probs=243.5

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ...+..+++ +|...|++++++|+ +++|+||+ ||.|+|||+...............+|...|.+++|+|++++|++|+
T Consensus        40 ~~~~~~~~~-~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          40 RHARQINTL-NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             SEEEEEEEE-CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEC-CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            456677777 89999999999997 68999987 7999999987654333333334568999999999999999999999


Q ss_pred             CCCcEEEEECCCC--ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          84 WDKTLRLWDLAAG--KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        84 ~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      .|+.|++||+...  +....+..|...+.+++|+|++..+++++.|+.+++|++...... .....|...+.+++|++++
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            9999999998754  455667789999999999999999999999999999998766544 3445788899999999875


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      .  .+++++.|+.|++||+++.+..... .|...|.+++|+|+++++++++.|+.+++||+..++.....          
T Consensus       196 ~--~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----------  262 (337)
T d1gxra_         196 T--KLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----------  262 (337)
T ss_dssp             S--EEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----------
T ss_pred             c--ccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecccccccccccccccccccc----------
Confidence            4  7889999999999999988765444 47889999999999999999999999999999876533211          


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                                                            .|...|.+++|+|++++|++|+.||.|++||...+..+..  
T Consensus       263 --------------------------------------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~--  302 (337)
T d1gxra_         263 --------------------------------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--  302 (337)
T ss_dssp             --------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred             --------------------------------------ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE--
Confidence                                                  2234577889999999999999999999998755433221  


Q ss_pred             cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                               .          .+...|.+++|+|+|++|++|+.||.|+|||+-
T Consensus       303 ---------~----------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         303 ---------S----------KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ---------E----------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ---------c----------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence                     1          123467899999999999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-42  Score=294.68  Aligned_cols=291  Identities=29%  Similarity=0.488  Sum_probs=244.8

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      .+..++|.||.+.|++|+|+|+ +++|+||+.||+|++||+....     ....+.+|...|.+++++|++.+++++..+
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~-----~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCccEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCCCcEEEEeeecccccccccccc
Confidence            3456789999999999999998 6899999999999999986543     234578899999999999999999999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      +.+.+|+....+....+..|...+.++.|+|++..+++++.|+.+++||+........+ .+|...+.+++++|++.  +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~  157 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGT--L  157 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSS--E
T ss_pred             cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCC--E
Confidence            99999999998888888999999999999999999999999999999998876655444 47888899999998754  7


Q ss_pred             EEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCC--------------------CEEEEEcCCCcEEEEECCCC
Q psy6984         166 IVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDG--------------------SLCASGGKDMNAMLWDLNDG  225 (380)
Q Consensus       166 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~d~~i~i~d~~~~  225 (380)
                      |++++.|+.|++|++.+.+....+.+|...+.++.++|++                    .++++++.|+.|++||+.++
T Consensus       158 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  237 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG  237 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence            9999999999999999988888888899999999998764                    35667777777777777665


Q ss_pred             cEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984         226 KHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       226 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      +.+..                                               +..|...|.+++|+|++++|++|+.||.
T Consensus       238 ~~~~~-----------------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~  270 (317)
T d1vyhc1         238 MCLMT-----------------------------------------------LVGHDNWVRGVLFHSGGKFILSCADDKT  270 (317)
T ss_dssp             EEEEE-----------------------------------------------EECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             cEEEE-----------------------------------------------EeCCCCCEEEEEECCCCCEEEEEECCCe
Confidence            54332                                               3344456788999999999999999999


Q ss_pred             EEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         306 IKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       306 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      |++||+..+..+..           +         ..|...|.+++|+|++++|++|+.||.|+|||
T Consensus       271 i~iwd~~~~~~~~~-----------~---------~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRCMKT-----------L---------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCCCEE-----------E---------ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEE-----------E---------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99998754432221           1         23455789999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-41  Score=299.20  Aligned_cols=307  Identities=21%  Similarity=0.390  Sum_probs=230.1

Q ss_pred             EeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcc-------------cccccccCCCcceEEEEEcc
Q psy6984           8 LRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYG-------------VPQKRLKGHSHFISDIVLSS   74 (380)
Q Consensus         8 ~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~   74 (380)
                      +...+ +|++.|++|+|+|+ +++|++|+ |++|++|++........             .......+|...|++++|+|
T Consensus        55 l~~~~-~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~  131 (388)
T d1erja_          55 LHKSL-DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP  131 (388)
T ss_dssp             EEEEE-ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred             eEeeC-CCCCcEEEEEECCC-CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC
Confidence            44443 79999999999997 68999987 89999999864322111             11123356888899999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984          75 DGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        75 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  154 (380)
                      ++++|++|+.||.|++||...++....+.+|...|.++++++++..+++++.++.+++||...........  +.....+
T Consensus       132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~  209 (388)
T d1erja_         132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTT  209 (388)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEE
T ss_pred             CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccc--ccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999987765544332  3344566


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe-------eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN-------HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                      +.+.+.. ..+|++++.|+.|++||..+......       ..+|...|.+++|+|++++|++++.|+.|++||+..+..
T Consensus       210 ~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         210 VAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             EEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----
T ss_pred             ccccCCC-CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc
Confidence            6676643 34899999999999999987655433       246788999999999999999999999999999987654


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                      ........                                   .+........|...|.+++|+|++++|++|+.||+|+
T Consensus       289 ~~~~~~~~-----------------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~  333 (388)
T d1erja_         289 KSDSKTPN-----------------------------------SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL  333 (388)
T ss_dssp             ---------------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEE
T ss_pred             cccccccc-----------------------------------ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEE
Confidence            32221100                                   0011122234556789999999999999999999999


Q ss_pred             EEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE------EecCCCEEEEEeeCCeEEEEEeee
Q psy6984         308 LWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA------WSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       308 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +||+.++..+..+.                    .|...|.+++      |+|++++||+|+.||.|+||++..
T Consensus       334 vwd~~~~~~~~~l~--------------------~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         334 FWDKKSGNPLLMLQ--------------------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             EEETTTCCEEEEEE--------------------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEECCCCcEEEEEe--------------------CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence            99976554433221                    2333455554      678999999999999999999864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-41  Score=291.84  Aligned_cols=300  Identities=21%  Similarity=0.266  Sum_probs=233.6

Q ss_pred             EEeEEec-CcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           7 QLRGTLN-GHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         7 ~~~~~~~-~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      .+...++ .+.+.+..++++|+ ++.|+.++ ++.|.+|++....     ....+.+|...|++++|+|+|++|++|+.|
T Consensus         7 ~~~~~~p~~~r~~~~~~a~~~~-g~~l~~~~-~~~v~i~~~~~~~-----~~~~~~~H~~~v~~~~~sp~g~~latg~~d   79 (311)
T d1nr0a1           7 ALFPSLPRTARGTAVVLGNTPA-GDKIQYCN-GTSVYTVPVGSLT-----DTEIYTEHSHQTTVAKTSPSGYYCASGDVH   79 (311)
T ss_dssp             EEECCCCCCCTTCCCCCEECTT-SSEEEEEE-TTEEEEEETTCSS-----CCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccCCCCCCCCCeEEEEEcCC-CCEEEEEe-CCEEEEEECCCCc-----eeEEEcCCCCCEEEEEEeCCCCeEeccccC
Confidence            3344443 33456677889998 67888776 5689999986432     234568999999999999999999999999


Q ss_pred             CcEEEEECCCCcee--eeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          86 KTLRLWDLAAGKTT--RRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        86 ~~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      |.|+|||+.+++..  ..+..|..+|.+++|+|+++++++++.  ++.+++|+......... ..+|...|.+++|+|++
T Consensus        80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~-l~~h~~~v~~v~~~~~~  158 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN-LTGQARAMNSVDFKPSR  158 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBC-CCCCSSCEEEEEECSSS
T ss_pred             ceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            99999999887643  457789999999999999999999886  45699999776544333 35788899999999986


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALC  241 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~  241 (380)
                      +. +|++|+.|+.|++||+++.+......+|...|+++.++|+++++++++.|+.+++||..+++....+...       
T Consensus       159 ~~-~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~-------  230 (311)
T d1nr0a1         159 PF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD-------  230 (311)
T ss_dssp             SC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT-------
T ss_pred             ee-eecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccc-------
Confidence            53 6889999999999999999988888899999999999999999999999999999999887765443211       


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                                                       .....+|...|.+++|+|++++|++|+.||+|++||+.++..+..+.
T Consensus       231 ---------------------------------~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         231 ---------------------------------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             ---------------------------------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ---------------------------------ccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence                                             01123456678999999999999999999999999875544332221


Q ss_pred             cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ...                 .....+.+  +.++++.|++++.||.|++||++
T Consensus       278 ~~~-----------------~~~~~~~~--~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         278 VGT-----------------RIEDQQLG--IIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CCS-----------------SGGGCEEE--EEECSSCEEEEETTCCEEEEETT
T ss_pred             CCC-----------------CccceEEE--EEecCCEEEEEECCCEEEEEeCC
Confidence            110                 00112334  44567789999999999999964

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-39  Score=281.31  Aligned_cols=294  Identities=24%  Similarity=0.434  Sum_probs=236.3

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ..++...+|.||.+.|++|+|+|+ +.+|+||+.||+|++||+....     ....+..|...|.+++|+|+++++++|+
T Consensus        43 ~~~~~~~tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~-----~~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CCCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTE-----EEEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             cceeeeEEECCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccce-----eEEEEecccccEEeeEeeccceeeeeec
Confidence            345677899999999999999997 6899999999999999986432     2345678999999999999999999999


Q ss_pred             CCCcEEEEECCCC----ceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEcc
Q psy6984          84 WDKTLRLWDLAAG----KTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSP  159 (380)
Q Consensus        84 ~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  159 (380)
                      .|+.+++|+....    +....+..|.......... .+..+.....|.....+........... ..+...+.+..+.+
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  194 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAP  194 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECT
T ss_pred             ccceeecccccccccccccceecccccccccccccc-cccccccccccccccccccccccccccc-cccceeEeeecccc
Confidence            9999999997654    3445566777666555544 4567788889998988886554443333 34566688888877


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEE
Q psy6984         160 NHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITA  239 (380)
Q Consensus       160 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  239 (380)
                      ..  .++++++.|+.|++||+++.+....+.+|...|++++|+|++++|++|+.|+.+++||+.....+..+..      
T Consensus       195 ~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~------  266 (340)
T d1tbga_         195 DT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH------  266 (340)
T ss_dssp             TS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------
T ss_pred             cc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc------
Confidence            54  4789999999999999999998888899999999999999999999999999999999987654432211      


Q ss_pred             EEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeE
Q psy6984         240 LCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  319 (380)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  319 (380)
                                                             ..+...+.+++|+|++++|++|+.||.|++||+..+..   
T Consensus       267 ---------------------------------------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~---  304 (340)
T d1tbga_         267 ---------------------------------------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR---  304 (340)
T ss_dssp             ---------------------------------------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE---
T ss_pred             ---------------------------------------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE---
Confidence                                                   01224577899999999999999999999998754332   


Q ss_pred             eecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         320 VDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                              +..+         ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus       305 --------~~~~---------~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         305 --------AGVL---------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --------EEEE---------CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --------EEEE---------cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                    2222         23566789999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-39  Score=285.52  Aligned_cols=307  Identities=15%  Similarity=0.184  Sum_probs=227.7

Q ss_pred             cccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECC
Q psy6984          15 HNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLA   94 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   94 (380)
                      +..+|++++|+|+ +++||+|+.||.|++|++.....   .....+++|...|.+++|+|++++|++|+.|+.|+|||+.
T Consensus         6 ~~~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~---~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           6 LVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             CCCCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCE---EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            3478999999998 68999999999999999864321   1234578999999999999999999999999999999998


Q ss_pred             CCcee--eeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          95 AGKTT--RRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        95 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      +++..  ..+..|...|.+++|+|+++.+++++.|+.+++|+......   .......|...|.+++|+|++.  +|++|
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~--~l~s~  159 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV--LLAAG  159 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS--EEEEE
T ss_pred             ccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc--ceecc
Confidence            76544  44567889999999999999999999999999998654332   2334567888999999999754  78999


Q ss_pred             eCCCeEEEEeCCCc------------------eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         170 GWDRMVKVWNLTNC------------------KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       170 ~~d~~v~iwd~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      +.|+.|++||+...                  .......+|...|.+++|+|++++|++++.|+.|++||+..++.+..+
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~  239 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  239 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeee
Confidence            99999999998542                  233445678889999999999999999999999999999876654332


Q ss_pred             EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      .                                               .+..+|.+++|+|++++|++| .|+.+++|..
T Consensus       240 ~-----------------------------------------------~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~  271 (371)
T d1k8kc_         240 A-----------------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTY  271 (371)
T ss_dssp             E-----------------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             e-----------------------------------------------cccccceeeeecCCCCEEEEE-cCCceEEEEe
Confidence            2                                               223457788899998877765 4777777654


Q ss_pred             ccceeeeEe----ecccceEEEee-----------------CcccccccCCCCCCceEEEEEecCCC----EEEEEeeCC
Q psy6984         312 LAHCKFTIV----DLETKKMVEEL-----------------RPDVVSQSTKADPPMCLSLAWSTDGQ----TLFAGYSDN  366 (380)
Q Consensus       312 ~~~~~~~~~----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~s~dg~----~l~~g~~dg  366 (380)
                      .........    +..........                 ...........|...|.++++.+.+.    .|+|++.||
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg  351 (371)
T d1k8kc_         272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  351 (371)
T ss_dssp             ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             eCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCC
Confidence            332111100    00000000000                 00000111234777899999988653    588999999


Q ss_pred             eEEEEEeee
Q psy6984         367 TIRVWQVSV  375 (380)
Q Consensus       367 ~v~iw~~~~  375 (380)
                      .|+||++..
T Consensus       352 ~v~iW~~~~  360 (371)
T d1k8kc_         352 GMSIWDVRS  360 (371)
T ss_dssp             EEEEEEHHH
T ss_pred             eEEEEeCCc
Confidence            999999854

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-39  Score=275.43  Aligned_cols=292  Identities=20%  Similarity=0.303  Sum_probs=219.3

Q ss_pred             EEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           7 QLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         7 ~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ++...+.||.+.|++|+|+|+ +++|+||+.||+|++||+......    .....+|...|++++|+|+++ +++++.|+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~----~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~   76 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISN----RVFPDVHATMITGIKTTSKGD-LFTVSWDD   76 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEE----ECSSCSCSSCEEEEEECTTSC-EEEEETTT
T ss_pred             ccceEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEE----EEEcCCCCCcEEEEEeeccce-eeccccee
Confidence            577899999999999999997 689999999999999998654321    112357889999999999987 55677899


Q ss_pred             cEEEEECCCCce---eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          87 TLRLWDLAAGKT---TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        87 ~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .+++|+......   ......+...+.+++|+|+++.+++++ ++.+++|+....   ....  ....+.+++++|++. 
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~---~~~~--~~~~~~~~~~s~~~~-  149 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL---TEVP--ISYNSSCVALSNDKQ-  149 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE---EEEE--CSSCEEEEEECTTSC-
T ss_pred             eEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccc---cccc--ccccccccccccccc-
Confidence            999999865432   222345677899999999998776665 468999985322   1222  233478899999754 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                       +|++++.|+.|++||+++.+... ....|...|.+++|+|+++++++++.|+.+++||+.++......           
T Consensus       150 -~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----------  217 (299)
T d1nr0a2         150 -FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-----------  217 (299)
T ss_dssp             -EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC-----------
T ss_pred             -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence             78999999999999998766433 44568889999999999999999999999999998765432110           


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeec
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDL  322 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~  322 (380)
                                                       ..+..|...|.+++|+|++++|++|+.||.|++||+.......... 
T Consensus       218 ---------------------------------~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-  263 (299)
T d1nr0a2         218 ---------------------------------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII-  263 (299)
T ss_dssp             ---------------------------------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE-
T ss_pred             ---------------------------------ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE-
Confidence                                             0122345678899999999999999999999999875432211110 


Q ss_pred             ccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         323 ETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                                      ....+...+..+ +++++++|++|+.||.|++||++
T Consensus       264 ----------------~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         264 ----------------KGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ----------------TTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred             ----------------ecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence                            001122234445 45678899999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7e-38  Score=269.35  Aligned_cols=255  Identities=20%  Similarity=0.233  Sum_probs=210.2

Q ss_pred             eeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           4 ETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         4 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      ++.++...+.+|.+.|++++|+|+ +++|++|+.||+|++|++......   ....+.+|...|.+++|+|++++|++++
T Consensus        46 ~~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          46 GSLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             TCSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTSCEEEEEE
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeeccccc---cccccccccCcccccccccccccccccc
Confidence            455677788999999999999998 789999999999999998764322   1234678999999999999999999998


Q ss_pred             CC--CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccC
Q psy6984          84 WD--KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPN  160 (380)
Q Consensus        84 ~d--~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  160 (380)
                      .+  ..++||++.+++....+..|...|.+++|+|++++ +++|+.|+.|++||..+..... ....|...|.++.++|+
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~-~~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-TFGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             CCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-EECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccc-ccccccccccccccCcc
Confidence            64  56999999999999999999999999999999885 7889999999999987765444 34578899999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCceeeEee-------eCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe
Q psy6984         161 HQNPIIVSAGWDRMVKVWNLTNCKLKINH-------SGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH  233 (380)
Q Consensus       161 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  233 (380)
                      ++  ++++++.|+.|++||+.+......+       .+|...|++++|+|++++|++|+.|+.|++||+++++.+..+..
T Consensus       201 ~~--~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~  278 (311)
T d1nr0a1         201 GS--LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV  278 (311)
T ss_dssp             SS--EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cc--ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC
Confidence            54  7999999999999999876654332       36888999999999999999999999999999999877655432


Q ss_pred             cCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         234 NDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       234 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                      ...+                                              ....+.+.+++.+|++++.||.|++||.
T Consensus       279 ~~~~----------------------------------------------~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         279 GTRI----------------------------------------------EDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             CSSG----------------------------------------------GGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             CCCc----------------------------------------------cceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            1100                                              0112344556778999999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-36  Score=261.54  Aligned_cols=324  Identities=22%  Similarity=0.330  Sum_probs=241.8

Q ss_pred             EeEEecCcccce-EEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC
Q psy6984           8 LRGTLNGHNGWV-TQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK   86 (380)
Q Consensus         8 ~~~~~~~h~~~v-~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~   86 (380)
                      ...+|+||.+.| +++.++   +++|+||+.||+|++||+....     ....+.+|...|++++|+|+ ++|++|+.|+
T Consensus         4 ~~~tL~GH~~~vitc~~~~---~~~l~tgs~Dg~i~vWd~~~~~-----~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~   74 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHG-GILVSGSTDR   74 (355)
T ss_dssp             EEEEEECCSSSCEEEEEEE---TTEEEEEETTTEEEEEETTTTE-----EEEEEECCSSCEEEEEEETT-TEEEEEETTC
T ss_pred             CcEEECCcCCCcEEEEEEC---CCEEEEEeCCCeEEEEECCCCc-----EEEEEECCCCCEEEEEEcCC-CEEEEEeccc
Confidence            356899998875 777764   4699999999999999986432     34567899999999999985 5899999999


Q ss_pred             cEEEEECCCCceeeeecccCC--CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE---------------------
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTK--DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI---------------------  143 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~---------------------  143 (380)
                      .|++|+....+.......+..  ......+.+++..+++++.|+.+++||+........                     
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  154 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence            999999998877766544333  345567788999999999999999999755332211                     


Q ss_pred             -eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         144 -VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       144 -~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                       ....|...+.+..  ++  ..+++++..|+.|++||+.+.+......++...+.++.++|+++++++++.|+.|++||+
T Consensus       155 ~~~~~~~~~v~~~~--~~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  230 (355)
T d1nexb2         155 GVLRGHMASVRTVS--GH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL  230 (355)
T ss_dssp             EEEECCSSCEEEEE--EE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             eeeeeccccccccc--cc--cceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeec
Confidence             1112223333332  22  237889999999999999998888888888889999999999999999999999999999


Q ss_pred             CCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEE-EEeecCCEEEEe
Q psy6984         223 NDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV-AFSVDNRQIVSS  300 (380)
Q Consensus       223 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~  300 (380)
                      .++..+..+. |...+.+++++++.        +.....++.+.+|++++....  +..|...+.++ .+++++++|++|
T Consensus       231 ~~~~~~~~~~~h~~~v~~~~~~~~~--------l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g  300 (355)
T d1nexb2         231 ENGELMYTLQGHTALVGLLRLSDKF--------LVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG  300 (355)
T ss_dssp             TTCCEEEEECCCSSCCCEEEECSSE--------EEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE
T ss_pred             cccccccccccccccccccccccce--------eeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE
Confidence            9998887774 67888898887641        223345778999999876543  33455555555 456777766665


Q ss_pred             eCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         301 SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       301 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                       .||+|++||+.++..           +.        .....|...|.+++|+|+ .++++++.||.+.||.++.
T Consensus       301 -~d~~i~vwd~~tg~~-----------~~--------~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~df  354 (355)
T d1nexb2         301 -SENQFNIYNLRSGKL-----------VH--------ANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILDF  354 (355)
T ss_dssp             -ETTEEEEEETTTCCB-----------CC--------SCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEEC
T ss_pred             -eCCEEEEEECCCCCE-----------EE--------EEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEeC
Confidence             589999998754322           11        112345667899999987 4677889999988887653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-36  Score=261.34  Aligned_cols=245  Identities=19%  Similarity=0.269  Sum_probs=211.0

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      ....+|.+.|++++|+|+ +++|++|+.||+|++||+.....   .....+..|...+.++.|+|++.++++++.|+.|+
T Consensus        91 ~~~~~h~~~I~~v~~s~d-g~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~  166 (337)
T d1gxra_          91 LDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTP---RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA  166 (337)
T ss_dssp             EECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC-----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eeecCCCCcEEEEEEcCC-CCEEEEeeccccccccccccccc---ccccccccccccccccccccccccccccccccccc
Confidence            345689999999999998 68999999999999999864322   12334678888999999999999999999999999


Q ss_pred             EEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA  169 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  169 (380)
                      +|++.+++.......|...|.+++|++++..+++++.|+.+++||+.........  .+...|.+++|+|++.  .++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~--~~~~~i~~l~~~~~~~--~l~~~  242 (337)
T d1gxra_         167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGE--WLAVG  242 (337)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSS--EEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceeeccc--ccccceEEEEEccccc--cccee
Confidence            9999999999999999999999999999999999999999999998876655443  4678899999999754  78999


Q ss_pred             eCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccc
Q psy6984         170 GWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQ  249 (380)
Q Consensus       170 ~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~  249 (380)
                      +.|+.+++||++..+.. ....|...|.+++|+|++++|++++.|+.|++||+.+++.+....                 
T Consensus       243 ~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-----------------  304 (337)
T d1gxra_         243 MESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----------------  304 (337)
T ss_dssp             ETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------
T ss_pred             ccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-----------------
Confidence            99999999999987654 456788999999999999999999999999999998876554332                 


Q ss_pred             eeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         250 KIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                                                     +...|.+++|+|++++|++|+.||+|++||+
T Consensus       305 -------------------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 -------------------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -------------------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -------------------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                           2245678889999999999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-35  Score=251.96  Aligned_cols=329  Identities=23%  Similarity=0.372  Sum_probs=243.9

Q ss_pred             eeEEeEEecCcccceEE-EEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe
Q psy6984           5 TLQLRGTLNGHNGWVTQ-IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS   83 (380)
Q Consensus         5 ~~~~~~~~~~h~~~v~~-i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   83 (380)
                      .++....|+||.+.|.+ +.+  + +++|+|||.||+|++||+....     ....+.+|...|.++.|+++  +|++|+
T Consensus         5 ~~~~~~~l~GH~~~V~s~~~~--~-g~~l~sgs~Dg~i~vWd~~~~~-----~~~~~~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             CCCCCEEEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCCcCEEECCcCCceEEEEEE--C-CCEEEEEeCCCeEEEEECCCCC-----EEEEEeCCCCCEEEEEeCCC--ccccce
Confidence            45667889999999854 555  3 5799999999999999986532     34567899999999999874  999999


Q ss_pred             CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          84 WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        84 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .|+.+++|+............+...+......  ...++.+..|+.+.+|+............. ......  ..+..  
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~--  147 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRC--VQYDG--  147 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEE--EEECS--
T ss_pred             ecccccccccccccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeecc-ccccee--ecccc--
Confidence            99999999998887777766666666655543  567889999999999998776555444322 222222  22222  


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEe
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCF  242 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~  242 (380)
                      ..+++++.|+.|++||+...+....+.+|...+...  ++++.++++++.|+.|++||++.++.+..+. +...+.++.+
T Consensus       148 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~  225 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL  225 (342)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred             ceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec
Confidence            357889999999999999888888888887766554  5578899999999999999999999887764 5667777777


Q ss_pred             ecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccc-eeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984         243 SPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRD-VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                      +++  +      +.....++.+.+|+....+....+..+... ....+++++++++++|+.||+|++||+.++..+..  
T Consensus       226 ~~~--~------l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~--  295 (342)
T d2ovrb2         226 KDN--I------LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN--  295 (342)
T ss_dssp             ETT--E------EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE--
T ss_pred             CCC--E------EEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEE--
Confidence            654  2      223345788999999887766555443322 22334455678999999999999998765543322  


Q ss_pred             cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCe----EEEEEeee
Q psy6984         322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNT----IRVWQVSV  375 (380)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~----v~iw~~~~  375 (380)
                               +..    .....+...|.+++|+|++++||+|+.||+    |++||...
T Consensus       296 ---------~~~----~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         296 ---------LVT----LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ---------EEE----CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ---------Eec----ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence                     110    011234556889999999999999999985    99999753

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=262.50  Aligned_cols=291  Identities=21%  Similarity=0.363  Sum_probs=216.2

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-------
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-------  103 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-------  103 (380)
                      ..+....++...+|+..... ..........+|.+.|++++|+|||++|++|+ |+.|+|||+.+++.+..+.       
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPR-EIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCC-CEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred             cccccCCCCcEEEeCCCCCc-ceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence            35567778899999865432 22222233447999999999999999999987 8999999999887766553       


Q ss_pred             -----------ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC
Q psy6984         104 -----------DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD  172 (380)
Q Consensus       104 -----------~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  172 (380)
                                 .|...|.+++|+|++++|++|+.|+.|++||......... ..+|...|.++.+++++.  .+++++.+
T Consensus       108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~--~~~~~~~~  184 (388)
T d1erja_         108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI-LQGHEQDIYSLDYFPSGD--KLVSGSGD  184 (388)
T ss_dssp             -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSS--EEEEEETT
T ss_pred             cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccc-cccccccccccccccccc--cccccccc
Confidence                       4566799999999999999999999999999876655443 457889999999998653  78899999


Q ss_pred             CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceee
Q psy6984         173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIK  252 (380)
Q Consensus       173 ~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (380)
                      +.+++||+++.........+...+....+.+++++|++++.|+.|++||..++.....+...                  
T Consensus       185 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------------------  246 (388)
T d1erja_         185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE------------------  246 (388)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------
T ss_pred             eeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccc------------------
Confidence            99999999988777666655555544445558999999999999999999887765443210                  


Q ss_pred             eeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeC
Q psy6984         253 LDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELR  332 (380)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  332 (380)
                                            ......|...|.+++|+|++++|++|+.||.|++|++..............       
T Consensus       247 ----------------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-------  297 (388)
T d1erja_         247 ----------------------NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS-------  297 (388)
T ss_dssp             --------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------------
T ss_pred             ----------------------cccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccc-------
Confidence                                  001123456788999999999999999999999999765433221111000       


Q ss_pred             cccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         333 PDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                       .........+...+.+++|+|+|++|++|+.||.|++||+.
T Consensus       298 -~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         298 -GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             -cceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence             00011123456678899999999999999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=248.30  Aligned_cols=267  Identities=25%  Similarity=0.431  Sum_probs=220.0

Q ss_pred             ccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q psy6984          58 KRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA  137 (380)
Q Consensus        58 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~  137 (380)
                      ..+.||...|++++|+|++++|+||+.||.|+|||+.+++.+..+..|...|.+++|+|++..++++..++.+.+|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             cceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984         138 HCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNA  217 (380)
Q Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  217 (380)
                      .... .....|...+.++.++|++.  .+++++.|+.+++||+++.+....+.+|...+.+++++|++++|++++.|+.+
T Consensus        91 ~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          91 FECI-RTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             SCEE-ECCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccc-cccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            5443 33457888899999999754  68999999999999999988888888999999999999999999999999999


Q ss_pred             EEEECCCCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE
Q psy6984         218 MLWDLNDGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ  296 (380)
Q Consensus       218 ~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  296 (380)
                      ++|++.+++....+ .+...+..+.++|+.........                            .......+...+.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~  219 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEA----------------------------TGSETKKSGKPGPF  219 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC----------------------------CSCC-------CCE
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeecc----------------------------ccceeeeeccCCce
Confidence            99999999887776 46777889999887654322110                            01112334457889


Q ss_pred             EEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       297 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +++++.|+.|++|+...+..+.           .+         ..|...+.+++|+|+|++|++|+.||.|++||+..
T Consensus       220 ~~~~~~d~~i~~~~~~~~~~~~-----------~~---------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         220 LLSGSRDKTIKMWDVSTGMCLM-----------TL---------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             EEEEETTSEEEEEETTTTEEEE-----------EE---------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             eEeccCCCEEEEEECCCCcEEE-----------EE---------eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            9999999999999875543322           11         12445688999999999999999999999999753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-35  Score=260.61  Aligned_cols=259  Identities=17%  Similarity=0.200  Sum_probs=197.6

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCc--eeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceE
Q psy6984          64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKF  141 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~  141 (380)
                      .++|+|++|+|||++||+|+.|+.|+|||+.+++  ....+.+|.++|.+++|+|++++|++++.|+.|++||+......
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            3579999999999999999999999999998775  55667899999999999999999999999999999998665433


Q ss_pred             -EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee----eEeeeCCccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         142 -TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL----KINHSGHTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       142 -~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                       .....+|...|.+++|+|+++  .|++++.|+.|++|++.....    ......|...|.+++|+|++++|++|+.|+.
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence             333457888999999999764  799999999999998865432    2334568889999999999999999999999


Q ss_pred             EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE
Q psy6984         217 AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ  296 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  296 (380)
                      +++||............         .+...                    ....+........+...+.+++|+|++++
T Consensus       165 v~v~~~~~~~~~~~~~~---------~~~~~--------------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAP---------TPWGS--------------------KMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             EEEEECCCTTTSCCCCC---------BTTBS--------------------CCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             EEEEeeccCcccccccc---------ccccc--------------------cccceeeeeeccCccCcEEEEEeeccccc
Confidence            99999865431110000         00000                    00111222233455677899999999999


Q ss_pred             EEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       297 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      |++++.|++|++||...+..+..           +         ..+...+.+++|+|||++|++|+ |+.+++|...
T Consensus       216 l~s~~~d~~i~iwd~~~~~~~~~-----------~---------~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         216 VAWVSHDSTVCLADADKKMAVAT-----------L---------ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EEEEETTTEEEEEEGGGTTEEEE-----------E---------ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             ccccccCCcceEEeeecccceee-----------e---------ecccccceeeeecCCCCEEEEEc-CCceEEEEee
Confidence            99999999999998754432221           1         12344578999999999888665 7888887754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-35  Score=246.75  Aligned_cols=280  Identities=18%  Similarity=0.267  Sum_probs=208.2

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      .+++.+|.||.++|++|.++|     |+||+.||+|++||+..          ...+|...|.++.+++++ .+++++.|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~----------~~~~h~~~V~~~~~~~~~-~~~s~s~D   66 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS----------MHQDHSNLIVSLDNSKAQ-EYSSISWD   66 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTE----------EECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCC----------CCCCCCCCEEEEEecCCC-eEEEEeec
Confidence            568899999999999999975     89999999999998642          135799999999998764 68999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCE
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPI  165 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  165 (380)
                      +.|++|++...       .....+.++++++++..++++ .++.+.+|+............  ...+  .++++++.  .
T Consensus        67 ~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~--~  132 (287)
T d1pgua2          67 DTLKVNGITKH-------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRL--NSPG--SAVSLSQN--Y  132 (287)
T ss_dssp             TEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEEC--SSCE--EEEEECSS--E
T ss_pred             ccccccccccc-------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccc--ccee--eeeeccCc--c
Confidence            99999986432       123457788888888776665 555678888766555444332  2223  34555543  4


Q ss_pred             EEEEeCC-CeEEEEeCCCceeeEeee-CCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE--EecCceEEEE
Q psy6984         166 IVSAGWD-RMVKVWNLTNCKLKINHS-GHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL--VHNDIITALC  241 (380)
Q Consensus       166 l~s~~~d-~~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~  241 (380)
                      +++++.+ +.+++|++...+...... .|...+++++|+|++.+|++|+.|+.|++||+.+++.....  .|...+.+++
T Consensus       133 ~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~  212 (287)
T d1pgua2         133 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS  212 (287)
T ss_dssp             EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEE
T ss_pred             eeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceee
Confidence            5555555 579999998765544433 46778999999999999999999999999999988765443  4677788888


Q ss_pred             eecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEee
Q psy6984         242 FSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVD  321 (380)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  321 (380)
                      |+|....                                      ...+.+++.+|++|+.|++|++|++..+.+     
T Consensus       213 ~~p~~~~--------------------------------------~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-----  249 (287)
T d1pgua2         213 WKPAEKG--------------------------------------ANEEEIEEDLVATGSLDTNIFIYSVKRPMK-----  249 (287)
T ss_dssp             ECCCC--------------------------------------------CCSCCEEEEEETTSCEEEEESSCTTC-----
T ss_pred             ecccccc--------------------------------------cccccCCCCeeEeecCCCeEEEEECCCCCe-----
Confidence            8876432                                      123446788999999999999998643211     


Q ss_pred             cccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         322 LETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                           .+.         ....|...|.+++|+|+++ |++++.||.|++|++
T Consensus       250 -----~~~---------~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         250 -----IIK---------ALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             -----CEE---------ETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             -----EEE---------EeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence                 111         1235667799999999875 788899999999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.4e-34  Score=245.12  Aligned_cols=288  Identities=15%  Similarity=0.275  Sum_probs=206.0

Q ss_pred             ceEEEEeCCCCCCeEEEeeCCC-eEEEeecCCCCCCcccccccccCCC-cceEEEEEcc--CCCEEEEEeCCCcEEEEEC
Q psy6984          18 WVTQIATNPKFPDTILSCSRDN-TLIIWKLTRDDTNYGVPQKRLKGHS-HFISDIVLSS--DGNYALSGSWDKTLRLWDL   93 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~~dg-~v~vw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~   93 (380)
                      .+++++++|+ ++.|+.++.+. .++.|+......   .....+.+|. ..|++++|+|  ++++|++|+.||.|+|||+
T Consensus        19 ~~t~l~~~~~-~~~la~~~~~~~~i~~~~~~~~~~---~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          19 FTTHLSYDPT-TNAIAYPCGKSAFVRCLDDGDSKV---PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CCCCCEEETT-TTEEEEEETTEEEEEECCSSCCSS---CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             CeEEEEECCC-CCEEEEEeCCCEEEEEEeCCCCCc---cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            5678999998 57777776543 456676433211   1223456774 5799999998  5789999999999999998


Q ss_pred             CCCcee--------eeecccCCCeEEEEEeCCCCEEEEEeC--CCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          94 AAGKTT--------RRFEDHTKDVLSVAFSVDNRQIVSSSR--DKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        94 ~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      ..++..        ..+..|.++|.+++|+++++++++++.  ++.+++|+..+......+ .+|...|.+++|+|+++ 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-  172 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRP-  172 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSS-
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee-eeccccccccccccccc-
Confidence            764432        234568889999999999999987764  678999987766554443 57899999999999764 


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEee---eCCccceEEEEEcCC-CCEEEEEcCCCcEEEEECCCCcEEEEEEe-cCceE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINH---SGHTGYLNTVTVSPD-GSLCASGGKDMNAMLWDLNDGKHLHTLVH-NDIIT  238 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~i~  238 (380)
                      .++++++.|+.+++||+...+.....   ..|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.. ...+ 
T Consensus       173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v-  251 (325)
T d1pgua1         173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV-  251 (325)
T ss_dssp             CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-
T ss_pred             ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccc-
Confidence            36788999999999999887655443   356778999999996 68899999999999999988876554421 1110 


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeee
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                                                                 ...++++.| |++++|++++.|++|++||+..+..+.
T Consensus       252 -------------------------------------------~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         252 -------------------------------------------QGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             -------------------------------------------CSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             -------------------------------------------ccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence                                                       011223333 688999999999999999876544332


Q ss_pred             EeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         319 IVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      .+....                ........++.|.+++ +|++|+.||.|+|||+
T Consensus       288 ~~~~~~----------------~~~~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         288 KWTLDK----------------QQLGNQQVGVVATGNG-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEECCT----------------TCGGGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred             EEEecC----------------CcccCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence            221111                0001122344555444 6789999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=244.64  Aligned_cols=324  Identities=15%  Similarity=0.227  Sum_probs=217.0

Q ss_pred             eEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccc-cccccCCCcceEEEEE------c-cCCCEEE
Q psy6984           9 RGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVP-QKRLKGHSHFISDIVL------S-SDGNYAL   80 (380)
Q Consensus         9 ~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~------~-~~~~~l~   80 (380)
                      ....++|.+.|.++++++   ++++|||.|++|++|+....+...... ......|...+..+..      + .++.+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            455689999999999864   589999999999999976543322111 1112234333322221      1 1345788


Q ss_pred             EEeCCCcEEEEECCCCceeeee----------cccCCCeEEEEEeCC-----CCEEEEEeCCCcEEEEeCCCcc------
Q psy6984          81 SGSWDKTLRLWDLAAGKTTRRF----------EDHTKDVLSVAFSVD-----NRQIVSSSRDKTIKLWNTLAHC------  139 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~~~~~----------~~h~~~v~~~~~~~~-----~~~~~s~~~d~~v~iwd~~~~~------  139 (380)
                      +++.||.|++|++........+          ..+...+..++|.++     +.++++++.|+.+++|++....      
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999999997644322111          224556778888765     3578999999999999853110      


Q ss_pred             --------eE---EEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe------eeCCccceEEEEEc
Q psy6984         140 --------KF---TIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN------HSGHTGYLNTVTVS  202 (380)
Q Consensus       140 --------~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~------~~~~~~~i~~~~~~  202 (380)
                              ..   ......+...+.+++|+|++   +|++|+.|++|++||+.+.+....      +.+|...|++++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg---~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC---EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence                    00   11112445568899999864   789999999999999998765443      34688999999999


Q ss_pred             CCCCEEEEEcCCC---cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeee
Q psy6984         203 PDGSLCASGGKDM---NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFF  279 (380)
Q Consensus       203 ~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (380)
                      |+|++|++|+.|+   .|++||+.+++.+..+.....                                  .......+.
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~----------------------------------~~~~~~~~~  286 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH----------------------------------SSQASLGEF  286 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------------------------------------------CCB
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccc----------------------------------cccceeeee
Confidence            9999999999987   489999999887665432110                                  011122345


Q ss_pred             ccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeC--cccccccCCCCCCceEEEEEecCC-
Q psy6984         280 SLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELR--PDVVSQSTKADPPMCLSLAWSTDG-  356 (380)
Q Consensus       280 ~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg-  356 (380)
                      +|...|++++|+|++++|+||+.|++|++||+.++..+..+....... ....  ..............+..+.|.+++ 
T Consensus       287 gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (393)
T d1sq9a_         287 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI-EIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  365 (393)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC-SSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             cccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcc-cCCccEEEECCCCCEEEEcccceEEECccCc
Confidence            678889999999999999999999999999998876665554322211 0000  000000111122346678887764 


Q ss_pred             ---------CEEEEEeeCCeEEEEEe
Q psy6984         357 ---------QTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       357 ---------~~l~~g~~dg~v~iw~~  373 (380)
                               +.|++++.|+.|++|+-
T Consensus       366 ~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         366 RSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             SBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             eeccccCCCCEEEEEEcCCeEEEEeC
Confidence                     45888999999999973

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-33  Score=242.05  Aligned_cols=223  Identities=16%  Similarity=0.207  Sum_probs=180.8

Q ss_pred             EeEEecCcc-cceEEEEeCCC-CCCeEEEeeCCCeEEEeecCCCCCCcccc---cccccCCCcceEEEEEccCCCEEEEE
Q psy6984           8 LRGTLNGHN-GWVTQIATNPK-FPDTILSCSRDNTLIIWKLTRDDTNYGVP---QKRLKGHSHFISDIVLSSDGNYALSG   82 (380)
Q Consensus         8 ~~~~~~~h~-~~v~~i~~~~~-~~~~l~t~~~dg~v~vw~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~   82 (380)
                      ....+.||. ..|+++.|+|. .+.+|++|+.||+|++|++..........   ...+..|...|.+++|++++++|+++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            345677885 67999999985 45789999999999999986433222111   12345788899999999999999887


Q ss_pred             eC--CCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCcceEEEe--eCCCcCcEEEEEE
Q psy6984          83 SW--DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSSSRDKTIKLWNTLAHCKFTIV--EDGHSDWVSCVRF  157 (380)
Q Consensus        83 ~~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~  157 (380)
                      +.  ++.+++|++.+++.+..+..|...|.+++|+|++.. +++++.|+.+++||..........  ...|...|.+++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~  213 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  213 (325)
T ss_dssp             ECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             eccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeee
Confidence            65  678999999999999999999999999999998875 678999999999997654433332  2467788999999


Q ss_pred             ccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEc---CCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         158 SPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVS---PDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       158 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      +|+.. .+|++++.|+.|++||+++.+....+.+|...+..+.|+   |+|++|++++.|+.|++||+++++.+..+
T Consensus       214 ~pd~~-~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         214 SPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             CSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccccc-eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            99753 478999999999999999998888888887776655555   78999999999999999999988776554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-33  Score=240.23  Aligned_cols=249  Identities=18%  Similarity=0.259  Sum_probs=190.1

Q ss_pred             cccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q psy6984          57 QKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNT  135 (380)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~  135 (380)
                      .+.++||...|++++|+|++++|++|+.||.|++||+.+++..+.+. .|...|.+++|+|++. +++++.|+.+++|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEecc
Confidence            34578999999999999999999999999999999999998888774 6889999999999987 556778999999986


Q ss_pred             CCcce--EEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         136 LAHCK--FTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       136 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      .....  .......+...+.+++++|++.  ++ +++.++.+++|+.....  ...  ....+.+++++|+++++++|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~-~~~~~~~i~~~~~~~~~--~~~--~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGD--IA-VAACYKHIAIYSHGKLT--EVP--ISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSS--CE-EEEESSEEEEEETTEEE--EEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred             CCccccccccccccccccccccccccccc--cc-ccccccccccccccccc--ccc--cccccccccccccccccccccc
Confidence            44221  1111224566788999999764  34 44457799999965322  111  2345788999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeec
Q psy6984         214 DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD  293 (380)
Q Consensus       214 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  293 (380)
                      |+.+++||+.+++.....                                              ...|...|.+++|+|+
T Consensus       157 dg~i~~~d~~~~~~~~~~----------------------------------------------~~~~~~~i~~~~~~~~  190 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVK----------------------------------------------TIVHPAEITSVAFSNN  190 (299)
T ss_dssp             TSEEEEEEEETTEEEEEE----------------------------------------------EEECSSCEEEEEECTT
T ss_pred             cccccccccccccccccc----------------------------------------------cccccccccccccccc
Confidence            999999998665432110                                              1123346788999999


Q ss_pred             CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      +++|++++.|+.|++|+...+.....           .      .....|...+.+++|+|+|++|++|+.||.|++|++
T Consensus       191 ~~~l~~~~~d~~i~~~~~~~~~~~~~-----------~------~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~  253 (299)
T d1nr0a2         191 GAFLVATDQSRKVIPYSVANNFELAH-----------T------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM  253 (299)
T ss_dssp             SSEEEEEETTSCEEEEEGGGTTEESC-----------C------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccccccccccccccccccccccccc-----------c------ccccccccccccccccccccceEEEcCCCEEEEEEC
Confidence            99999999999999998654322110           0      112345667899999999999999999999999998


Q ss_pred             eee
Q psy6984         374 SVT  376 (380)
Q Consensus       374 ~~~  376 (380)
                      ...
T Consensus       254 ~~~  256 (299)
T d1nr0a2         254 NKP  256 (299)
T ss_dssp             TCT
T ss_pred             CCC
Confidence            654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-32  Score=229.87  Aligned_cols=287  Identities=27%  Similarity=0.429  Sum_probs=214.9

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      ++.+..+.+|...|+|++++   +++|+||+.||+|++||+....     ....+.+|...|+++.|  ++++|++|+.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~d---~~~l~sgs~Dg~i~vWd~~~~~-----~~~~l~~H~~~V~~v~~--~~~~l~s~s~D   74 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSD   74 (293)
T ss_dssp             CCCEECCCSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred             EEEEeccCCCCCCEEEEEEc---CCEEEEEeCCCeEEEEECCCCc-----EEEEEecCCCCEeeeec--ccceeeccccc
Confidence            34455677899999998864   5799999999999999986432     34567899999998876  67899999999


Q ss_pred             CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce--EEEeeCCCcCcEEEEEEccCCCC
Q psy6984          86 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK--FTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      +.|++|++..+........+....  ..+.+....++++..++.+++|+......  .......|...+.+..+.+.   
T Consensus        75 ~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---  149 (293)
T d1p22a2          75 STVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---  149 (293)
T ss_dssp             SCEEEEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---
T ss_pred             cccccccccccccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceeccc---
Confidence            999999999888777665544433  34556677899999999999999765432  23344567778888777653   


Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEee
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFS  243 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~  243 (380)
                       .+++++.|+.|++||+++.+....+.++...+..+.++  +.++++++.|+.|++||+++.+.+......         
T Consensus       150 -~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------  217 (293)
T d1p22a2         150 -YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH---------  217 (293)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC---------
T ss_pred             -ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccc---------
Confidence             67889999999999999998888888888888777665  568999999999999999887655332110         


Q ss_pred             cCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecc
Q psy6984         244 PNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLE  323 (380)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~  323 (380)
                                                            ...+  ..+++++.+|++|+.||.|++||+........  ..
T Consensus       218 --------------------------------------~~~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~--~~  255 (293)
T d1p22a2         218 --------------------------------------EELV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRA--PA  255 (293)
T ss_dssp             --------------------------------------SSCE--EEEECCSSEEEEEETTSCEEEEEHHHHTSTTS--CT
T ss_pred             --------------------------------------ceee--eeccccceEEEEEcCCCEEEEEECCCCccccc--cC
Confidence                                                  0111  23566788999999999999998643221110  00


Q ss_pred             cceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEE
Q psy6984         324 TKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQ  372 (380)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~  372 (380)
                      ....+         .....|...|.+++|  |+++|++|+.||.|+|||
T Consensus       256 ~~~~~---------~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         256 GTLCL---------RTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTTEE---------EEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             Cceee---------EEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            11111         112346667888887  678899999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-31  Score=230.31  Aligned_cols=250  Identities=24%  Similarity=0.404  Sum_probs=204.3

Q ss_pred             cccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984          57 QKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  136 (380)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~  136 (380)
                      ..+++||.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|..+|.+++|+|++.++++++.|+.+++|+..
T Consensus        48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             Ccc---eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC
Q psy6984         137 AHC---KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       137 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      ...   .......+|.....+......   ..+.....+.....+.............+...+....+.+.+.++++++.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            322   222233456666665555443   35778888999999999887777777777888999999999999999999


Q ss_pred             CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeec
Q psy6984         214 DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD  293 (380)
Q Consensus       214 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  293 (380)
                      |+.+++||+++++.+..+                                               ..|...|.+++|+|+
T Consensus       205 d~~v~i~d~~~~~~~~~~-----------------------------------------------~~h~~~i~~v~~~p~  237 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTF-----------------------------------------------TGHESDINAICFFPN  237 (340)
T ss_dssp             TTEEEEEETTTTEEEEEE-----------------------------------------------CCCSSCEEEEEECTT
T ss_pred             CceEEEEECCCCcEEEEE-----------------------------------------------eCCCCCeEEEEECCC
Confidence            999999999887654332                                               123356788999999


Q ss_pred             CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      +++|++|+.||.|++|+.........+                  ....+...+.+++|+|+|++|++|+.||.|++||+
T Consensus       238 ~~~l~s~s~d~~i~~~~~~~~~~~~~~------------------~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~  299 (340)
T d1tbga_         238 GNAFATGSDDATCRLFDLRADQELMTY------------------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEE------------------CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred             CCEEEEEeCCCeEEEEeeccccccccc------------------ccccccCceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence            999999999999999987554332211                  11223445789999999999999999999999997


Q ss_pred             e
Q psy6984         374 S  374 (380)
Q Consensus       374 ~  374 (380)
                      .
T Consensus       300 ~  300 (340)
T d1tbga_         300 L  300 (340)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-31  Score=231.88  Aligned_cols=281  Identities=21%  Similarity=0.331  Sum_probs=208.0

Q ss_pred             ccccCCCcce-EEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984          58 KRLKGHSHFI-SDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  136 (380)
Q Consensus        58 ~~~~~h~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~  136 (380)
                      .+++||.+.| +|+  ++++++|+||+.||.|+|||+.+++.+..+.+|.++|.+++|+|+ ..+++++.|+.+++|+..
T Consensus         6 ~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            4578998886 555  456899999999999999999999999999999999999999985 589999999999999987


Q ss_pred             CcceEEEeeCC-CcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeE-----------------------eeeCC
Q psy6984         137 AHCKFTIVEDG-HSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKI-----------------------NHSGH  192 (380)
Q Consensus       137 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-----------------------~~~~~  192 (380)
                      ........... +........+.++  ..++++++.|+.|++||+.......                       ....|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKN--IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETT--EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccc--cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            66554433322 2222334445554  3478999999999999997643221                       11122


Q ss_pred             ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984         193 TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH  271 (380)
Q Consensus       193 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (380)
                      ...+  ..+.+++++++++..|+.+++||+.+++.+.... +...+..+.++|++....      ....++.+.+|+...
T Consensus       161 ~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         161 MASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI------SASMDTTIRIWDLEN  232 (355)
T ss_dssp             SSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE------EEETTSCEEEEETTT
T ss_pred             cccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeee------cccccceEEeeeccc
Confidence            2333  3456678999999999999999999998877664 566788888998876532      233567899999999


Q ss_pred             ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA  351 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                      +.....+..|...|.+++++  +++|++|+.||+|++||+....+....          ..           .......+
T Consensus       233 ~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~----------~~-----------~~~~~~~~  289 (355)
T d1nexb2         233 GELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----------HH-----------TNLSAITT  289 (355)
T ss_dssp             CCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE----------EC-----------TTCCCCCE
T ss_pred             cccccccccccccccccccc--cceeeeeecccccccccccccceeccc----------cc-----------CCceEEEE
Confidence            99888888898999998885  579999999999999997543321110          00           00111235


Q ss_pred             EecCCCEEEEEeeCCeEEEEEeee
Q psy6984         352 WSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       352 ~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +++++++|++| .||.|+|||+..
T Consensus       290 ~~~~~~~l~~g-~d~~i~vwd~~t  312 (355)
T d1nexb2         290 FYVSDNILVSG-SENQFNIYNLRS  312 (355)
T ss_dssp             EEECSSEEEEE-ETTEEEEEETTT
T ss_pred             EcCCCCEEEEE-eCCEEEEEECCC
Confidence            77888877765 599999999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-32  Score=238.12  Aligned_cols=310  Identities=13%  Similarity=0.124  Sum_probs=212.1

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccC-CCEEEEEeC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSD-GNYALSGSW   84 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~   84 (380)
                      |+++..+++|.+.|++|+|+|+ +++||+||.||+|++||+.......  ......+|...|.+++|+|+ +.+|++|+.
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNV--DLLQSLRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEE--EEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred             CCeEEcCCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcce--EEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence            4678888999999999999998 6899999999999999987543221  12233479999999999986 458999999


Q ss_pred             CCcEEEEECCCCceeeeecccCCC-eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcce---EEEeeCCC--cCcEEEEEEc
Q psy6984          85 DKTLRLWDLAAGKTTRRFEDHTKD-VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCK---FTIVEDGH--SDWVSCVRFS  158 (380)
Q Consensus        85 d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~---~~~~~~~~--~~~v~~~~~~  158 (380)
                      |+.|++|++..+........+... .....+.++...+++++.++.+++||+.....   .......+  ........+.
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence            999999999887777666555443 44555677888999999999999999643211   11111111  1222334444


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeE---eeeCCccceEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEEec
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKI---NHSGHTGYLNTVTVS-PDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN  234 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  234 (380)
                      +..  ..+++++.|+.|++||+.......   ....+...+.+..+. +++..+++++.|+.+.+|+...........  
T Consensus       158 ~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~--  233 (342)
T d1yfqa_         158 TNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS--  233 (342)
T ss_dssp             ECS--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT--
T ss_pred             ccC--CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc--
Confidence            443  378899999999999997654321   222334445555544 577899999999999999876542110000  


Q ss_pred             CceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         235 DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                                                  ....+..  .........+...+.+++|+|++++|+||+.||+|++||+..+
T Consensus       234 ----------------------------~~~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         234 ----------------------------KRFAFRC--HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             ----------------------------TCEEEEC--CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             ----------------------------ccceeee--eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence                                        0000000  0001112234456889999999999999999999999987544


Q ss_pred             eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEe
Q psy6984         315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQV  373 (380)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~  373 (380)
                      .+           +..+.        ..+.  ...++|+|+|++|++|+.|+.+++|..
T Consensus       284 ~~-----------l~~~~--------~~~~--~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         284 KK-----------IKNFA--------KFNE--DSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EE-----------EEECC--------CCSS--SEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             cE-----------EEEec--------CCCC--CEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            33           22221        1112  235778999999999999998877754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.4e-29  Score=214.12  Aligned_cols=280  Identities=24%  Similarity=0.394  Sum_probs=207.6

Q ss_pred             cccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q psy6984          57 QKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTL  136 (380)
Q Consensus        57 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~  136 (380)
                      ...++||.+.|.+ +++++|++|+||+.||.|+|||+.+++.+..+.+|...|.+++|+|+  ++++++.|+.+++|+..
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            4568999999865 36778999999999999999999999999999999999999999874  89999999999999976


Q ss_pred             CcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         137 AHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      ....... ...+...+......+    ..+..+..|+.+.+|+..+.+.......+....  ....+....+++++.|+.
T Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          86 TGECIHT-LYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             TTEEEEE-ECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEEEECSSCEEEEETTSC
T ss_pred             cccceec-ccccceeEeeeeccc----ccccccccceeEEEeecccccceeeeecccccc--eeeccccceeeeecCCCe
Confidence            6544333 334445555555443    257788999999999999887666555444332  334556778899999999


Q ss_pred             EEEEECCCCcEEEEEE-ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCC
Q psy6984         217 AMLWDLNDGKHLHTLV-HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR  295 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  295 (380)
                      +++||....+.+..+. +...+...  .+++.+      +.....++.+.+|+...++....+..+...+.++++  +++
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~------l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~  228 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRVYSL--QFDGIH------VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDN  228 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEE--EECSSE------EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETT
T ss_pred             EEEeecccceeeEEEcCcccccccc--cCCCCE------EEEEeCCCeEEEeecccceeeeEecccccceeEEec--CCC
Confidence            9999999888776664 33333333  334332      223345788999999998888877788777776655  567


Q ss_pred             EEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         296 QIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       296 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      +|++|+.||.|++|+.........           +.      ....+...+.++  +++++++++|+.||.|++||+..
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~-----------~~------~~~~~~~~~~~~--~~~~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQT-----------LQ------GPNKHQSAVTCL--QFNKNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEE-----------EC------STTSCSSCEEEE--EECSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEcCCCEEEEEeccccccccc-----------cc------ccceeeeceeec--ccCCCeeEEEcCCCEEEEEECCC
Confidence            999999999999998754332211           11      112233344444  55678999999999999999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.3e-29  Score=221.52  Aligned_cols=319  Identities=11%  Similarity=0.028  Sum_probs=218.1

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCC--cEEEEECCCCce
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDK--TLRLWDLAAGKT   98 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~   98 (380)
                      .-.|+|..++++|+++ +|.|.+|++....      .. ..+|...|.+++|+|||++|++++.+.  .|++||+.+++.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~------~~-~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------VL-KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSB------EE-ECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCc------EE-EccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            4568884478888877 4799999875432      11 136888999999999999998876553  799999988765


Q ss_pred             eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE----------
Q psy6984          99 TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS----------  168 (380)
Q Consensus        99 ~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----------  168 (380)
                      . .+..|...|.+++|+||++++++++.++.+++|+.......... ..+...+.+++|+|+++  +|+.          
T Consensus        79 ~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~--~la~~~~~~~~~~~  154 (360)
T d1k32a3          79 E-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-RSREAMITDFTISDNSR--FIAYGFPLKHGETD  154 (360)
T ss_dssp             E-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTTSC--EEEEEEEECSSTTC
T ss_pred             E-EeeCCCceEEeeeecccccccceeccccccccccccccceeeee-ecccccccchhhcccee--eeeeecccccccee
Confidence            5 56789999999999999999999999999999998776554443 45677788999999875  4543          


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-------EEE-EecCceEEE
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL-------HTL-VHNDIITAL  240 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~-~~~~~i~~~  240 (380)
                      +..++.+++||+.+.+... ...+...+..+.++|+|++|++++.++.+.+||.......       ..+ .+......+
T Consensus       155 ~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (360)
T d1k32a3         155 GYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT  233 (360)
T ss_dssp             SCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG
T ss_pred             eccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccc
Confidence            2334579999998876543 3446667888999999999999999999999987654322       111 122333334


Q ss_pred             EeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee---cCCEEEEeeCCCcEEEEecccceee
Q psy6984         241 CFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV---DNRQIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                      .+++++....... .........+..++...+.. ..+..+...+..+.+.+   ++.++++++.++.|++||+..+...
T Consensus       234 ~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  311 (360)
T d1k32a3         234 KLVPRSMTSEAGE-YDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT  311 (360)
T ss_dssp             GCCCGGGSCCCCC-CCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE
T ss_pred             eECCCcCcccccc-eeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE
Confidence            4555443321110 00000111233333333322 22233333444444443   3456788889999999986543211


Q ss_pred             eEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeecc
Q psy6984         318 TIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR  378 (380)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~~  378 (380)
                      .            +            ...+.+++|||||++|++++.||.|++|++..++.
T Consensus       312 ~------------~------------~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         312 E------------V------------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             E------------E------------EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             E------------e------------cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            1            0            11356899999999999999999999999976654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-29  Score=223.15  Aligned_cols=266  Identities=16%  Similarity=0.223  Sum_probs=180.0

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCce------eeeecccCCCeEEEEE------eC-CCCEEEEEe
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKT------TRRFEDHTKDVLSVAF------SV-DNRQIVSSS  125 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~------~~~~~~h~~~v~~~~~------~~-~~~~~~s~~  125 (380)
                      ..++|...|.+++++  +++++|++.|+.|+|||..+.+.      ......|...+..+..      +. ++..+++++
T Consensus         9 ~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            357999999999886  47999999999999999765432      1222234433322221      11 234678999


Q ss_pred             CCCcEEEEeCCCcce----EE-Ee----eCCCcCcEEEEEEccCCC---CCEEEEEeCCCeEEEEeCCCce---------
Q psy6984         126 RDKTIKLWNTLAHCK----FT-IV----EDGHSDWVSCVRFSPNHQ---NPIIVSAGWDRMVKVWNLTNCK---------  184 (380)
Q Consensus       126 ~d~~v~iwd~~~~~~----~~-~~----~~~~~~~v~~~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~---------  184 (380)
                      .|+.+++|+......    .. ..    ...+...+..+++.+...   ..++++++.|+.+++|++....         
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            999999998532111    11 10    012334566777776542   3468899999999999974211         


Q ss_pred             ------e---eEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeee
Q psy6984         185 ------L---KINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDI  255 (380)
Q Consensus       185 ------~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  255 (380)
                            .   ......+...+.+++|+|++ +|++|+.|+.|++||+.+++.+..+...                     
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~---------------------  224 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ---------------------  224 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC---------------------
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc---------------------
Confidence                  0   01112345668899999998 8899999999999999988765443211                     


Q ss_pred             eeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc---EEEEecccceeeeEeecccceEEEeeC
Q psy6984         256 SRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT---IKLWNTLAHCKFTIVDLETKKMVEELR  332 (380)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---v~iw~~~~~~~~~~~~~~~~~~~~~~~  332 (380)
                                          ..+.+|...|.+++|+|+|++|++|+.|++   |++||+..+..+..+.....       
T Consensus       225 --------------------~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~-------  277 (393)
T d1sq9a_         225 --------------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-------  277 (393)
T ss_dssp             --------------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------
T ss_pred             --------------------cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccc-------
Confidence                                123356678999999999999999999875   89998766554433321110       


Q ss_pred             cccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         333 PDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      ..........|...|.+++|+|||++|++|+.|+.|++||+..
T Consensus       278 ~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         278 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            0011122346788899999999999999999999999999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-28  Score=212.06  Aligned_cols=265  Identities=15%  Similarity=0.144  Sum_probs=181.3

Q ss_pred             cccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee---ecccCCCeEEEEEeCCC-CEEEEEeCCCcEEEEe
Q psy6984          59 RLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDN-RQIVSSSRDKTIKLWN  134 (380)
Q Consensus        59 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~-~~~~s~~~d~~v~iwd  134 (380)
                      ..++|++.|++++|+|++++|++|+.||.|+|||+.++.....   ...|..+|.+++|+|++ ..+++|+.|+.+++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            4578999999999999999999999999999999976544332   33699999999999865 5789999999999999


Q ss_pred             CCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceee----EeeeCC--ccceEEEEEcCCCCEE
Q psy6984         135 TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLK----INHSGH--TGYLNTVTVSPDGSLC  208 (380)
Q Consensus       135 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~--~~~i~~~~~~~~~~~l  208 (380)
                      .............+........+.++  ...+++++.++.+++||++.....    .....+  ........+.+.+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             cccccccccccccccccccccccccc--cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            87665555544444444444444443  347899999999999998653221    111122  2334556778889999


Q ss_pred             EEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEE
Q psy6984         209 ASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSV  288 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  288 (380)
                      ++++.|+.+++||+...+........                                            ........+.
T Consensus       164 ~~~~~d~~i~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~  199 (342)
T d1yfqa_         164 IVGMNNSQVQWFRLPLCEDDNGTIEE--------------------------------------------SGLKYQIRDV  199 (342)
T ss_dssp             EEEESTTEEEEEESSCCTTCCCEEEE--------------------------------------------CSCSSCEEEE
T ss_pred             eeecCCCcEEEEecccCcccceeeee--------------------------------------------cccccceeee
Confidence            99999999999998765422111000                                            0001112222


Q ss_pred             E-EeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCe
Q psy6984         289 A-FSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNT  367 (380)
Q Consensus       289 ~-~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~  367 (380)
                      . +.+++..+++++.||.+.+|+..........  .........   ........+...+.+++|+|++++||+|+.||.
T Consensus       200 ~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~  274 (342)
T d1yfqa_         200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS--SKRFAFRCH---RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI  274 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTC--TTCEEEECC---CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred             EeecCCCCEEEeecCCCeEEEEEecCCcceeec--cccceeeee---eeccCCCcccccceeEEecCCccEEEEECCCCE
Confidence            3 3346778999999999999986543221110  000011101   111123345566889999999999999999999


Q ss_pred             EEEEEee
Q psy6984         368 IRVWQVS  374 (380)
Q Consensus       368 v~iw~~~  374 (380)
                      |++||+.
T Consensus       275 v~vWD~~  281 (342)
T d1yfqa_         275 ISCWNLQ  281 (342)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=4.5e-27  Score=210.55  Aligned_cols=323  Identities=11%  Similarity=0.029  Sum_probs=203.3

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeee-----ccc
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRF-----EDH  105 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~h  105 (380)
                      ++++.+.||+|++||+.....     ..++..| ..+..++|+|||++|++++.|+.|++||+.+++.....     ..|
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~-----~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~  107 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKI-----VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA  107 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSE-----EEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             EEEEEcCCCEEEEEECCCCcE-----EEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence            467788999999999875432     2344555 35899999999999999999999999999988754332     245


Q ss_pred             CCCeEEEEEeCCCCEEEE-EeCCCcEEEEeCCCcceEEEeeCCCc-----------CcEEEEEEccCCCCCEEEEEeCCC
Q psy6984         106 TKDVLSVAFSVDNRQIVS-SSRDKTIKLWNTLAHCKFTIVEDGHS-----------DWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus       106 ~~~v~~~~~~~~~~~~~s-~~~d~~v~iwd~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ...+.+++|+|||+++++ +..++.+++||........... .+.           .....+..++++. .++.+....+
T Consensus       108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~-~~~~~~~~~~  185 (426)
T d1hzua2         108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHP-EFIVNVKETG  185 (426)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSS-EEEEEETTTT
T ss_pred             cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCCccceeecCCCceeEEEECCCCC-EEEEecCCCC
Confidence            556677788899998754 5588999999987765544332 222           2233445555433 1233344445


Q ss_pred             eEEEEeCCCcee-eEeeeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEEEEecC---ceEEEEeecCccc
Q psy6984         174 MVKVWNLTNCKL-KINHSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHTLVHND---IITALCFSPNRSF  248 (380)
Q Consensus       174 ~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~---~i~~~~~~~~~~~  248 (380)
                      .+.+++..+... .....++...+..+.++|++++++++. .+..+.+++..+++.+.......   ......+......
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         186 KVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             eEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            565565544332 223335667788999999999877665 56778999999988776664321   1112222211110


Q ss_pred             ceeeeeeeeeccccceEEEEcCC-------ceeeeeeeccccceeEEEEeecCCEEE-------EeeCCCcEEEEecccc
Q psy6984         249 QKIKLDISRTLQKSNLILYPINH-------GKMETPFFSLFRDVLSVAFSVDNRQIV-------SSSRDKTIKLWNTLAH  314 (380)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~-------s~~~dg~v~iw~~~~~  314 (380)
                      ..   .......+..+.++....       .+....+..|...+..++|+||+++|+       +++.|++|++||+.++
T Consensus       266 ~~---~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         266 PV---WSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             EE---EEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             ce---EEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence            00   000111223333333322       244455667778899999999999999       4566899999997554


Q ss_pred             eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEE-----EeeCCeEEEEEeee
Q psy6984         315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFA-----GYSDNTIRVWQVSV  375 (380)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----g~~dg~v~iw~~~~  375 (380)
                      .....+           .+.........+...|..++|||||+.|+.     ++.+|.|+|||..+
T Consensus       343 ~~~~~~-----------~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         343 DAKYQV-----------LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             TSCCEE-----------ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             CcCeEE-----------eccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            322110           000000112234556889999999997743     23688999999653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.9e-26  Score=193.99  Aligned_cols=235  Identities=17%  Similarity=0.205  Sum_probs=180.5

Q ss_pred             EEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEE
Q psy6984          10 GTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLR   89 (380)
Q Consensus        10 ~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   89 (380)
                      ....+|.+.|.++.+.+.  ..+++++.|+++++|++....            ....+.++.+++++..++++ .++.+.
T Consensus        40 ~~~~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~~  104 (287)
T d1pgua2          40 SMHQDHSNLIVSLDNSKA--QEYSSISWDDTLKVNGITKHE------------FGSQPKVASANNDGFTAVLT-NDDDLL  104 (287)
T ss_dssp             EEECCCCSCEEEEECCST--TCCEEEETTTEEEETTEEEEE------------CSSCEEEEEECSSSEEEEEE-TTSEEE
T ss_pred             CCCCCCCCCEEEEEecCC--CeEEEEeeccccccccccccc------------cccceeeeeeccCCceEEEe-ecccce
Confidence            456799999999999865  478999999999999864311            12246678888888766665 556789


Q ss_pred             EEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC-cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          90 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK-TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        90 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      +|+..+++....+..+ .++  .++++++..+++++.++ .+++|+.............+...+.+++|+|++.  +|++
T Consensus       105 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~  179 (287)
T d1pgua2         105 ILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET--YIAA  179 (287)
T ss_dssp             EEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS--EEEE
T ss_pred             eeeccceeeeeecccc-cee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc--cccc
Confidence            9999988888776543 333  45677888888888765 7999997655444445556778899999999864  7999


Q ss_pred             EeCCCeEEEEeCCCceeeE-eeeCCccceEEEEEcCC----------CCEEEEEcCCCcEEEEECCCCcEEEEEEecCce
Q psy6984         169 AGWDRMVKVWNLTNCKLKI-NHSGHTGYLNTVTVSPD----------GSLCASGGKDMNAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~----------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      ++.|+.|++||+.+.+... ...+|...|.+++|+|.          +.++++|+.|+.|++||++.+...         
T Consensus       180 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~---------  250 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI---------  250 (287)
T ss_dssp             EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC---------
T ss_pred             ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE---------
Confidence            9999999999999877654 35678999999999875          468999999999999998653211         


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEec
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNT  311 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  311 (380)
                                                           ...+.+|...|.+++|+|++ .|+|++.||+|++|++
T Consensus       251 -------------------------------------~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 -------------------------------------IKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -------------------------------------EEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             -------------------------------------EEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                                                 01122455678899999986 5889999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=4.2e-27  Score=205.38  Aligned_cols=284  Identities=11%  Similarity=0.113  Sum_probs=205.4

Q ss_pred             CcccceEEEEeCCCCCCeEEEeeCCC--eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSCSRDN--TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~~~dg--~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      +|.+.|++++|+|+ +++|++++.+.  .|++|+.....      ...+..|...|.+++|+|||++|++++.++.+++|
T Consensus        40 ~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~~~------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  112 (360)
T d1k32a3          40 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  112 (360)
T ss_dssp             SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCCCc------EEEeeCCCceEEeeeecccccccceeccccccccc
Confidence            79999999999998 67777665443  79999986532      33467899999999999999999999999999999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCC
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNH  161 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (380)
                      ++.+++....+..|...+.+++|+|||++++.+.          .++.+++||.........  ..+...+.++.|+|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~~~~spdg  190 (360)
T d1k32a3         113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA--TTENSHDYAPAFDADS  190 (360)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC--SCSSSBEEEEEECTTS
T ss_pred             cccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeee--cccccccccccccCCC
Confidence            9999999998889999999999999999998654          345689999876654333  2455668889999987


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceee-------EeeeCCccceEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEE
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLK-------INHSGHTGYLNTVTVSPDGSLCASGGKDM-----NAMLWDLNDGKHLH  229 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~  229 (380)
                      +  .|++++.++.+++||.......       .....+...+..+.++|++..++++..+.     .+..++...+....
T Consensus       191 ~--~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (360)
T d1k32a3         191 K--NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM  268 (360)
T ss_dssp             C--EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE
T ss_pred             C--EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeE
Confidence            5  6888999999999998654322       12223444444455677776666554432     34445555555444


Q ss_pred             EEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEE
Q psy6984         230 TLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLW  309 (380)
Q Consensus       230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  309 (380)
                      ...++..+..+.+.+.+.....   ......+..+.+|++..++..    .+...+.+++|||||++|++++.||.|++|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~  341 (360)
T d1k32a3         269 IIPLESSILIYSVPVHGEFAAY---YQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTF  341 (360)
T ss_dssp             EEECSSEEEEEECCCCCSHHHH---HHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             eeecCCCceEEEEEecCCCeeE---EEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEE
Confidence            4445555555555444332111   112234566788998876643    234568899999999999999999999999


Q ss_pred             ecccce
Q psy6984         310 NTLAHC  315 (380)
Q Consensus       310 ~~~~~~  315 (380)
                      ++..+.
T Consensus       342 d~~~~~  347 (360)
T d1k32a3         342 PLEKPE  347 (360)
T ss_dssp             ESSCTT
T ss_pred             ECCCCC
Confidence            976543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-24  Score=183.31  Aligned_cols=233  Identities=23%  Similarity=0.395  Sum_probs=171.4

Q ss_pred             ccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcc
Q psy6984          60 LKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus        60 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      ...|...|+|+.  +|+++|+||+.||.|+|||+.+++.+..+.+|..+|.+++|  ++++|++|+.|+.+++|+.....
T Consensus        11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            456778898865  58999999999999999999999999999999999999876  67899999999999999987765


Q ss_pred             eEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee---eEeeeCCccceEEEEEcCCCCEEEEEcCCCc
Q psy6984         140 KFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL---KINHSGHTGYLNTVTVSPDGSLCASGGKDMN  216 (380)
Q Consensus       140 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  216 (380)
                      ........ ......  +.+.  ...++++..++.+++|+......   ......|...+..+.+.  ...+++++.|+.
T Consensus        87 ~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~  159 (293)
T d1p22a2          87 MLNTLIHH-CEAVLH--LRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRT  159 (293)
T ss_dssp             EEEEECCC-CSCEEE--EECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred             cccccccc-cccccc--cccc--ccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCc
Confidence            55444322 222222  2222  23688999999999999976543   33445677777776655  457888999999


Q ss_pred             EEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCE
Q psy6984         217 AMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQ  296 (380)
Q Consensus       217 i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  296 (380)
                      +++||+.+++.+..+..                                               +...+..  +++++.+
T Consensus       160 i~~~d~~~~~~~~~~~~-----------------------------------------------~~~~v~~--~~~~~~~  190 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLNG-----------------------------------------------HKRGIAC--LQYRDRL  190 (293)
T ss_dssp             EEEEETTTCCEEEEEEC-----------------------------------------------CSSCEEE--EEEETTE
T ss_pred             eeeecCCCCcEEEEEcc-----------------------------------------------ccccccc--ccCCCCe
Confidence            99999988776544321                                               0112222  3445788


Q ss_pred             EEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         297 IVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       297 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      +++++.||+|++||......+...                    ..+...+  ..+++++.+|++|+.||.|++|++.
T Consensus       191 l~~~~~dg~i~i~d~~~~~~~~~~--------------------~~~~~~v--~~~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         191 VVSGSSDNTIRLWDIECGACLRVL--------------------EGHEELV--RCIRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEE--------------------CCCSSCE--EEEECCSSEEEEEETTSCEEEEEHH
T ss_pred             EEEecCCCEEEEEecccceeeeee--------------------cccceee--eeccccceEEEEEcCCCEEEEEECC
Confidence            999999999999987554332221                    1112223  2467899999999999999999974

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=7.4e-25  Score=195.83  Aligned_cols=331  Identities=13%  Similarity=0.065  Sum_probs=219.7

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-E
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-L   80 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~   80 (380)
                      +.++.++...+..|. .+..++++|+ ++++++++.||++++||+...............+|...+....|+|||++| +
T Consensus        48 D~~t~~v~~~~~~g~-~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v  125 (432)
T d1qksa2          48 DGSTYEIKTVLDTGY-AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA  125 (432)
T ss_dssp             ETTTCCEEEEEECSS-CEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence            456778888998774 6999999998 789999999999999998754322111122234566667777889999986 6


Q ss_pred             EEeCCCcEEEEECCCCceeeeeccc-----------CCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCC
Q psy6984          81 SGSWDKTLRLWDLAAGKTTRRFEDH-----------TKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGH  148 (380)
Q Consensus        81 s~~~d~~i~vwd~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~  148 (380)
                      +++.++.|++||..+++.+..+..|           ......+.++|++..++ +...++.+.+||.............+
T Consensus       126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~  205 (432)
T d1qksa2         126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA  205 (432)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred             EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence            7888999999999999888766543           34466788999998764 56677899999976654433333344


Q ss_pred             cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC-----CccceEEEEEcCCCCEEEEEc-CCCcEEEEEC
Q psy6984         149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG-----HTGYLNTVTVSPDGSLCASGG-KDMNAMLWDL  222 (380)
Q Consensus       149 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~  222 (380)
                      .....+++|+|+++. +++++..+..+.++|..+.+.......     |........+...+...++.. .++.+.+|+.
T Consensus       206 g~~~~~~~~spdg~~-~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~  284 (432)
T d1qksa2         206 ERFLHDGGLDGSHRY-FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT  284 (432)
T ss_dssp             CSSEEEEEECTTSCE-EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             cCccccceECCCCCE-EEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccc
Confidence            556889999998753 444555667899999988776544321     333344444555555555443 3788999986


Q ss_pred             CCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         223 NDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       223 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      .....   ..+...+....++|++.....      ........+|.......      +.....++++ ||++.|++++.
T Consensus       285 ~~~~~---~~~~~~v~~~~~~~~g~~~~~------~s~p~~~~lw~~~~~~~------~~~~~~sv~v-pDg~~la~~s~  348 (432)
T d1qksa2         285 DPEGH---PDNAWKILDSFPALGGGSLFI------KTHPNSQYLYVDATLNP------EAEISGSVAV-FDIKAMTGDGS  348 (432)
T ss_dssp             CTTTC---TTTBTSEEEEEECSCSCCCCE------ECCTTCSEEEEECTTCS------SHHHHTCEEE-EEGGGCCCSSS
T ss_pred             ccccc---cccccEEEEEEEcCCCCeEEE------EecCCccceeecccCCC------CCCeeeEEEE-Eechhhccccc
Confidence            55421   112334556666665433221      11234455665433221      1111234554 99999999999


Q ss_pred             CCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEe-----eCCeEEEEEee
Q psy6984         303 DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGY-----SDNTIRVWQVS  374 (380)
Q Consensus       303 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~-----~dg~v~iw~~~  374 (380)
                      |+.+++|++.+...                       ...+...+..++|||||++|+...     .+|.|+|||..
T Consensus       349 d~~~k~w~~~~~~~-----------------------l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~  402 (432)
T d1qksa2         349 DPEFKTLPIAEWAG-----------------------ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  402 (432)
T ss_dssp             CCCEEEECHHHHHT-----------------------CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CCceEecccccccc-----------------------cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence            99999997532110                       012334577899999999886543     46889999854

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=6.1e-22  Score=167.87  Aligned_cols=271  Identities=15%  Similarity=0.170  Sum_probs=202.3

Q ss_pred             EEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceeeeecccCCCeE
Q psy6984          32 ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTRRFEDHTKDVL  110 (380)
Q Consensus        32 l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~  110 (380)
                      +++.+.|++|.+||+......     .++. ....+..++|+|||++|+ +++.++.|++||+.+++.+..+..+. .+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~-----~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~   77 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVT-----ATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ   77 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEE-----EEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred             EEEECCCCEEEEEECCCCeEE-----EEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccc
Confidence            556788999999998654321     2222 223467899999999875 66788999999999999998887665 468


Q ss_pred             EEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee
Q psy6984         111 SVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH  189 (380)
Q Consensus       111 ~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  189 (380)
                      .++|++++..++ ++..++.+.+|+.........+.  +.....++.++|++.. +++++..++.+.+|+..+.......
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccceeeecccccceeeeecc--ccccceEEEeecCCCe-eeeeeccccceeeeeccccceeeec
Confidence            899999998765 45677789999987765554443  3345788999998653 5567778899999999988876665


Q ss_pred             eCCccceEEEEEcCCCCEEEEEcCC-CcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEE
Q psy6984         190 SGHTGYLNTVTVSPDGSLCASGGKD-MNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYP  268 (380)
Q Consensus       190 ~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (380)
                      ..+ ..+..+.++|+++.+++++.+ +.+.+|+....+..........+..+++++++.......   .......+.+|+
T Consensus       155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~---~~~~~~~v~v~D  230 (301)
T d1l0qa2         155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN---VDKYFNTVSMID  230 (301)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEE---ECSSCCEEEEEE
T ss_pred             ccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecccccccccccc---ccceeeeeeeee
Confidence            544 457889999999987776654 677788888777777777778888999999876543221   112335688999


Q ss_pred             cCCceeeeeeeccccceeEEEEeecCCEE-EEeeCCCcEEEEecccceee
Q psy6984         269 INHGKMETPFFSLFRDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       269 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~  317 (380)
                      ..+++....+ .....+.+++|+|||++| ++++.|++|++||+.++..+
T Consensus       231 ~~t~~~~~~~-~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         231 TGTNKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             TTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCeEEEEE-cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            9888776544 334568899999999986 67788999999987655443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=5.1e-22  Score=168.39  Aligned_cols=263  Identities=13%  Similarity=0.121  Sum_probs=192.7

Q ss_pred             EEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          80 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        80 ~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                      ++++.|+.|.+||+.+++.++++... ..+..++|+|||++++ +++.++.|++||+.+......+. .+. .+..+.++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-AGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-CSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-ccc-cccccccc
Confidence            45678899999999999998887643 4578999999999874 67788999999988776655544 333 46889999


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcEEEEEEecCce
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDMNAMLWDLNDGKHLHTLVHNDII  237 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~i  237 (380)
                      +++.. +++++..++.+.+|+..+.+.......+ ..+..+.++|+++.++ ++..+..+.+|+..+.+.+..+.....+
T Consensus        83 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (301)
T d1l0qa2          83 PDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP  160 (301)
T ss_dssp             TTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred             ccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc
Confidence            87653 5667778899999999988776666544 4578899999999764 5667889999999999998888888888


Q ss_pred             EEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC---CCcEEEEecccc
Q psy6984         238 TALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR---DKTIKLWNTLAH  314 (380)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~v~iw~~~~~  314 (380)
                      ..+.++|+.......     ........++.....+.... .........++|+++++.++.++.   +++|++||..++
T Consensus       161 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVA-----NFDSMSISVIDTVTNSVIDT-VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEEECTTSSEEEEE-----ETTTTEEEEEETTTTEEEEE-EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             eEEEeeccccceeee-----cccccccccccccceeeeec-ccccCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence            899999987643222     11233445555554444332 333455678999999998776543   468999987554


Q ss_pred             eeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEE-EEEeeCCeEEEEEee
Q psy6984         315 CKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTL-FAGYSDNTIRVWQVS  374 (380)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l-~~g~~dg~v~iw~~~  374 (380)
                      .....           +..          ...+..++|||||++| ++++.|+.|++||+.
T Consensus       235 ~~~~~-----------~~~----------~~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         235 KITAR-----------IPV----------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEEE-----------EEC----------CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eEEEE-----------EcC----------CCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            33221           110          1235689999999987 467789999999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=9.5e-24  Score=188.57  Aligned_cols=301  Identities=9%  Similarity=0.027  Sum_probs=203.6

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceee--ee---ccc
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTR--RF---EDH  105 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~---~~h  105 (380)
                      ++++.+.||+|.|||......     ...+..| ..+..++|+|||++|++++.|+.|++||+.+++...  ++   ..|
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v-----~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEI-----KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCE-----EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             EEEEEcCCCEEEEEECCCCcE-----EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            358999999999999875442     2334444 358999999999999999999999999998876432  22   345


Q ss_pred             CCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCCCcceEEEeeC----------CCcCcEEEEEEccCCCCCEEEEEeCCCe
Q psy6984         106 TKDVLSVAFSVDNRQI-VSSSRDKTIKLWNTLAHCKFTIVED----------GHSDWVSCVRFSPNHQNPIIVSAGWDRM  174 (380)
Q Consensus       106 ~~~v~~~~~~~~~~~~-~s~~~d~~v~iwd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~s~~~d~~  174 (380)
                      .+.+.+.+|+|||+++ ++++.++.+++||..+.........          .+......+.++|++.. ++++...++.
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~-~~vs~~~~~~  186 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE-FIVNVKETGK  186 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE-EEEEETTTTE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE-EEEEEccCCe
Confidence            5556667788999986 6788899999999876654433221          12334567788887653 5667788899


Q ss_pred             EEEEeCCCceeeEe-eeCCccceEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEEEEEEecCc------eEEEEeecCc
Q psy6984         175 VKVWNLTNCKLKIN-HSGHTGYLNTVTVSPDGSLCASGG-KDMNAMLWDLNDGKHLHTLVHNDI------ITALCFSPNR  246 (380)
Q Consensus       175 v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~------i~~~~~~~~~  246 (380)
                      |.+||..+.+.... .-.+...+..++|+|+|+++++++ .+..+.++|..+++.+..+.....      .....+...+
T Consensus       187 i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g  266 (432)
T d1qksa2         187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  266 (432)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCC
Confidence            99999987654322 223445688999999999876665 457889999998887776654322      2222222111


Q ss_pred             ccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccce
Q psy6984         247 SFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKK  326 (380)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~  326 (380)
                      ..     .......+..+.+|......    ...+...+....++|++..+++++.+.++++|.....            
T Consensus       267 ~~-----~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~------------  325 (432)
T d1qksa2         267 PV-----WATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL------------  325 (432)
T ss_dssp             EE-----EEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT------------
T ss_pred             ce-----ecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccC------------
Confidence            11     11112223444555443221    2234456778899999999999999999999963211            


Q ss_pred             EEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         327 MVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                           .         .+.....++++ ||++.|++++.|+.+++|++.
T Consensus       326 -----~---------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~  358 (432)
T d1qksa2         326 -----N---------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIA  358 (432)
T ss_dssp             -----C---------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHH
T ss_pred             -----C---------CCCCeeeEEEE-EechhhcccccCCceEecccc
Confidence                 0         01111123444 999999999999999999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=6.3e-22  Score=170.42  Aligned_cols=271  Identities=12%  Similarity=0.112  Sum_probs=187.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecc--cCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCCC----c
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFED--HTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGH----S  149 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~----~  149 (380)
                      +|+++++.|+.|+|||+.+++.+..+..  +...+.+++|+|||++++ +++.++.|.+||+.+...........    .
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            5899999999999999999999888754  345678999999999874 66789999999988766554433211    1


Q ss_pred             CcEEEEEEccCCCCCEEEEEe------------CCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcE
Q psy6984         150 DWVSCVRFSPNHQNPIIVSAG------------WDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNA  217 (380)
Q Consensus       150 ~~v~~~~~~~~~~~~~l~s~~------------~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  217 (380)
                      ..+..++++|+++  .++++.            .+..+.+||..+.+....... ...+..++++|+|+++++++.+  +
T Consensus        82 ~~~~~v~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--L  156 (337)
T ss_dssp             ECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--E
T ss_pred             cceeeEEEcCCCc--EEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--c
Confidence            2234688999865  344333            467889999998887666654 4457889999999999988755  6


Q ss_pred             EEEECCCCcEEEEEEecCceEEEEeecCcccc-------e-eee-eee---------eeccccceEEEEcCCceeeee-e
Q psy6984         218 MLWDLNDGKHLHTLVHNDIITALCFSPNRSFQ-------K-IKL-DIS---------RTLQKSNLILYPINHGKMETP-F  278 (380)
Q Consensus       218 ~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~-~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~-~  278 (380)
                      .+||..+++....+..........+.+++...       . ... ...         .......+.+++...++.... +
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            78999999887776543332222233322110       0 000 000         011223466777777665543 3


Q ss_pred             eccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCE
Q psy6984         279 FSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQT  358 (380)
Q Consensus       279 ~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  358 (380)
                      ..+...+..++++|++.+++.+  ++.|++||+.++..+..+..                     +..+.+++|+|||++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~---------------------~~~~~~~~~s~dG~~  293 (337)
T d1pbyb_         237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---------------------PHSYYSVNVSTDGST  293 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---------------------SSCCCEEEECTTSCE
T ss_pred             cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC---------------------CCCEEEEEECCCCCE
Confidence            4455667788999999998765  58999998765543322211                     123467999999999


Q ss_pred             EEEEeeCCeEEEEEeee
Q psy6984         359 LFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       359 l~~g~~dg~v~iw~~~~  375 (380)
                      |++++.||.|+|||+..
T Consensus       294 l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         294 VWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEESBSSEEEEEETTT
T ss_pred             EEEEeCCCcEEEEECCC
Confidence            99999999999999854

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=6.2e-22  Score=176.78  Aligned_cols=312  Identities=10%  Similarity=0.053  Sum_probs=199.6

Q ss_pred             cceeeEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984           2 STETLQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus         2 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      +..+.++..+|..|. .+..++++|+ ++++++++.||+|++||+...............+|...+.++.|+|||+++++
T Consensus        48 D~~t~~~~~~l~~g~-~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v  125 (426)
T d1hzua2          48 DGDSKKIVKVIDTGY-AVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA  125 (426)
T ss_dssp             ETTTCSEEEEEECCS-SEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred             ECCCCcEEEEEeCCC-CeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence            345667888998875 5899999998 78999999999999999876543221112233467777778889999998755


Q ss_pred             -EeCCCcEEEEECCCCceeeeecccCCCe-----------EEEEEeCCCCEEEEEeCC-CcEEEEeCCCcceEEEeeCCC
Q psy6984          82 -GSWDKTLRLWDLAAGKTTRRFEDHTKDV-----------LSVAFSVDNRQIVSSSRD-KTIKLWNTLAHCKFTIVEDGH  148 (380)
Q Consensus        82 -~~~d~~i~vwd~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~~~~s~~~d-~~v~iwd~~~~~~~~~~~~~~  148 (380)
                       +..++.+.+||..+++....+..|...+           ..+.+++++..++....+ +.+.+++.............+
T Consensus       126 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  205 (426)
T d1hzua2         126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA  205 (426)
T ss_dssp             EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred             eecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence             4588999999999998887776655444           344455555554443332 334344333322222222345


Q ss_pred             cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCC--ccceEEEEEcCCCC--E-EEEEcCCCcEEEEECC
Q psy6984         149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGH--TGYLNTVTVSPDGS--L-CASGGKDMNAMLWDLN  223 (380)
Q Consensus       149 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~--~-l~~~~~d~~i~i~d~~  223 (380)
                      ...+..+.+.|+++. ++++...+..+.+++..+.+........  ........+.+.+.  . .++.+.|+.+.+|+..
T Consensus       206 ~~~~~~~~~~~~g~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~  284 (426)
T d1hzua2         206 APFLADGGWDSSHRY-FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  284 (426)
T ss_dssp             CSSEEEEEECTTSCE-EEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred             CCccEeeeECCCCcE-EEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence            667889999998653 4455566788999999988766544321  11112222222222  1 2234456777777654


Q ss_pred             C-------CcEEEEEE-ecCceEEEEeecCcccceeeeeee-eeccccceEEEEcCCceeeeee---------eccccce
Q psy6984         224 D-------GKHLHTLV-HNDIITALCFSPNRSFQKIKLDIS-RTLQKSNLILYPINHGKMETPF---------FSLFRDV  285 (380)
Q Consensus       224 ~-------~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v  285 (380)
                      .       .+....+. |...+..++|+|++.+........ ....+..+.+|++.+++....+         ..+...+
T Consensus       285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv  364 (426)
T d1hzua2         285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV  364 (426)
T ss_dssp             TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred             ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccE
Confidence            4       34555553 567789999999988754322111 1223567899999877654332         2344568


Q ss_pred             eEEEEeecCCEEE-Ee----eCCCcEEEEeccccee
Q psy6984         286 LSVAFSVDNRQIV-SS----SRDKTIKLWNTLAHCK  316 (380)
Q Consensus       286 ~~~~~s~~~~~l~-s~----~~dg~v~iw~~~~~~~  316 (380)
                      ..++|||||++++ ++    +.|+.|++||..+.+.
T Consensus       365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             EEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence            8999999999764 43    3588999998755443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=2.6e-22  Score=173.50  Aligned_cols=279  Identities=12%  Similarity=0.075  Sum_probs=191.0

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCCcceEEEeeCC
Q psy6984          70 IVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVEDG  147 (380)
Q Consensus        70 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~  147 (380)
                      +++++++++|++++.|+.|.+||+.+++.+.++. .|...+.+++|+|||++++ +++.++.|.+||+.+..........
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4678999999999999999999999999998876 4556788999999999875 5668899999998876655443322


Q ss_pred             Cc-----CcEEEEEEccCCCCCEEEEE------------eCCCeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEE
Q psy6984         148 HS-----DWVSCVRFSPNHQNPIIVSA------------GWDRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLC  208 (380)
Q Consensus       148 ~~-----~~v~~~~~~~~~~~~~l~s~------------~~d~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l  208 (380)
                      ..     ..+..++|+|+++.  ++.+            ..+..+.+||..+++.......  ....+..+.++++++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~--l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKE--VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSE--EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred             ccccccCCceEEEEEecCCCE--EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence            21     12446889998764  3333            2477889998877654322221  12345556677777766


Q ss_pred             EEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeee--------------------eeeeccccceEEEE
Q psy6984         209 ASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD--------------------ISRTLQKSNLILYP  268 (380)
Q Consensus       209 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~  268 (380)
                      +++   ..+.+|+..+++.+..+........+.++|++........                    .........+.+|+
T Consensus       160 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         160 VAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             EES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            543   4689999999998888766655566666665432211000                    00011233456677


Q ss_pred             cCCceeeee-eeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCce
Q psy6984         269 INHGKMETP-FFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMC  347 (380)
Q Consensus       269 ~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (380)
                      ...+..... ...+...+..+.+++++.+++.+. ++.|++||...+..+..           ...          ...+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~-----------~~~----------~~~~  294 (346)
T d1jmxb_         237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKA-----------ANL----------DHTY  294 (346)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEE-----------EEC----------SSCC
T ss_pred             CCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEE-----------EcC----------CCCE
Confidence            776665443 345666788899999999888766 45799998655433222           111          1135


Q ss_pred             EEEEEecCCCEEEEEeeCCeEEEEEeee
Q psy6984         348 LSLAWSTDGQTLFAGYSDNTIRVWQVSV  375 (380)
Q Consensus       348 ~~~~~s~dg~~l~~g~~dg~v~iw~~~~  375 (380)
                      .+++|||||++|++|+.||.|+|||+..
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            6899999999999999999999999863

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=7e-21  Score=163.78  Aligned_cols=270  Identities=13%  Similarity=0.129  Sum_probs=185.2

Q ss_pred             CeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEE-EEEeCCCcEEEEECCCCceeeeecccCC-
Q psy6984          30 DTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYA-LSGSWDKTLRLWDLAAGKTTRRFEDHTK-  107 (380)
Q Consensus        30 ~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~h~~-  107 (380)
                      +++++++.|++|++||+........+   ....+...+..++|+|||+++ ++++.++.|.+||+.+++.+..+..+.. 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i---~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI---TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE---ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE---ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            58999999999999998754322111   122334457789999999987 4667889999999999999888765533 


Q ss_pred             ----CeEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984         108 ----DVLSVAFSVDNRQIVSSS------------RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus       108 ----~v~~~~~~~~~~~~~s~~------------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                          .+..++|+|+++.++++.            .+..+.+||...........  ....+.+++++|++.  ++++++ 
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~--~l~~~~-  153 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGS--KLYGLG-  153 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSS--CEEEES-
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCC--EEEEEc-
Confidence                345789999999998776            45678888877765554443  234577899999876  455555 


Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcC------------------------CCCEEEEEcCCCcEEEEECCCCcE
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSP------------------------DGSLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~------------------------~~~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                       +.+.+||..+.+.......+... ....++|                        +......+..++.+.+|+..++..
T Consensus       154 -~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (337)
T d1pbyb_         154 -RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             -SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             -CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE
Confidence             45778999887665544322110 0111111                        122222234455788999988875


Q ss_pred             EEEE--EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCc
Q psy6984         228 LHTL--VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKT  305 (380)
Q Consensus       228 ~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  305 (380)
                      ....  .+......+.++|+..+...        ..+.+.+|+..+++..... .+...+.+++|+|||++|++++.|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~  302 (337)
T d1pbyb_         232 AMREVRIMDVFYFSTAVNPAKTRAFG--------AYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD  302 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEE--------EESEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSCEEEEESBSSE
T ss_pred             EEEEecCCCcceEEEEecccceEEEE--------ccccEEEEECCCCcEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            5433  34555667777777654321        2366889999988876654 34566889999999999999999999


Q ss_pred             EEEEecccceeee
Q psy6984         306 IKLWNTLAHCKFT  318 (380)
Q Consensus       306 v~iw~~~~~~~~~  318 (380)
                      |++||..+...+.
T Consensus       303 i~v~D~~t~~~v~  315 (337)
T d1pbyb_         303 LAAYDAETLEKKG  315 (337)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCcEEE
Confidence            9999876554433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=1.3e-19  Score=156.31  Aligned_cols=278  Identities=15%  Similarity=0.096  Sum_probs=179.8

Q ss_pred             EeCCCCCCeEEEeeCCCeEEEeecCCCCCCccccccccc-CCCcceEEEEEccCCCEEE-EEeCCCcEEEEECCCCceee
Q psy6984          23 ATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLK-GHSHFISDIVLSSDGNYAL-SGSWDKTLRLWDLAAGKTTR  100 (380)
Q Consensus        23 ~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~  100 (380)
                      ++.++ +++|++++.|++|.+||+.....     ...++ .|...+.+++|+|||++++ ++..++.|++||+.+++.+.
T Consensus         3 a~~~~-~~~l~~~~~~~~v~v~D~~t~~~-----~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~   76 (346)
T d1jmxb_           3 ALKAG-HEYMIVTNYPNNLHVVDVASDTV-----YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   76 (346)
T ss_dssp             CCCTT-CEEEEEEETTTEEEEEETTTTEE-----EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cCCCC-CcEEEEEcCCCEEEEEECCCCCE-----EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeee
Confidence            45665 68999999999999999875432     12222 3455678999999999875 55678999999999998877


Q ss_pred             eecccC------CCeEEEEEeCCCCEEEEEe------------CCCcEEEEeCCCcceEEEee-CCCcCcEEEEEEccCC
Q psy6984         101 RFEDHT------KDVLSVAFSVDNRQIVSSS------------RDKTIKLWNTLAHCKFTIVE-DGHSDWVSCVRFSPNH  161 (380)
Q Consensus       101 ~~~~h~------~~v~~~~~~~~~~~~~s~~------------~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~  161 (380)
                      .+....      ..+..++|+|||+++++++            .+..+.+|+........... ......+..+.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T d1jmxb_          77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG  156 (346)
T ss_dssp             EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred             eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence            654322      2356789999999988765            46677888765432211100 0011223334444433


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCC--------------------------EEEEEcCCC
Q psy6984         162 QNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGS--------------------------LCASGGKDM  215 (380)
Q Consensus       162 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------------~l~~~~~d~  215 (380)
                        .+++ .  +..+.+|++.+.+.......+. ....+.++|++.                          .++++..+.
T Consensus       157 --~~~~-~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         157 --SLYV-A--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             --CEEE-E--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             --EEEE-e--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence              2333 3  2568889988766655443221 112222333332                          333444556


Q ss_pred             cEEEEECCCCcEEEEE--EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeec
Q psy6984         216 NAMLWDLNDGKHLHTL--VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD  293 (380)
Q Consensus       216 ~i~i~d~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  293 (380)
                      .+.+||..++......  .+...+..+.++++..+....       ..+.+.+|+...++....+ .....+.+++|+||
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~v~d~~~~~~~~~~-~~~~~~~~va~s~D  302 (346)
T d1jmxb_         231 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG-------VLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKK  302 (346)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE-------EESEEEEEETTTTEEEEEE-ECSSCCCEEEECSS
T ss_pred             eEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEe-------cCCeEEEEECCCCcEEEEE-cCCCCEEEEEEcCC
Confidence            7888888887765443  345567777777776543321       2346888999888766544 34456889999999


Q ss_pred             CCEEEEeeCCCcEEEEecccceeeeEe
Q psy6984         294 NRQIVSSSRDKTIKLWNTLAHCKFTIV  320 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~  320 (380)
                      |++|++++.|+.|++||..+...+..+
T Consensus       303 G~~l~v~~~d~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         303 GDKLYLGGTFNDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             SSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCcEEEEECccCCEEEEE
Confidence            999999999999999987665544433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=9.8e-19  Score=150.10  Aligned_cols=287  Identities=11%  Similarity=0.142  Sum_probs=176.7

Q ss_pred             eEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeee---cccC
Q psy6984          31 TILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRF---EDHT  106 (380)
Q Consensus        31 ~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~---~~h~  106 (380)
                      .+++++.|++|++|++.....   +.......|...+..++|+|||++|++++ .|+.|.+|++.......++   ..+.
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~---l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA---LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC---EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCC---eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            457888999999999875321   11222345777899999999999996555 5899999999765443332   2344


Q ss_pred             CCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCcceEE-EeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCce
Q psy6984         107 KDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFT-IVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCK  184 (380)
Q Consensus       107 ~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  184 (380)
                      ..+..++|+|||+++++++. ++.+.+|+........ .....+...+.++.++|+++. ++.....+..|.+|+.....
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~-~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT-LWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE-EEEEEGGGTEEEEEEECTTS
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeeccee-eeccccccceeeEEEeccCC
Confidence            56778999999999998875 6688888765433222 222345566788999998753 33444456789999986643


Q ss_pred             eeEe------eeCCccceEEEEEcCCCCEEEEE-cCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeee
Q psy6984         185 LKIN------HSGHTGYLNTVTVSPDGSLCASG-GKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISR  257 (380)
Q Consensus       185 ~~~~------~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  257 (380)
                      ....      .......+..++|++++.++... ...+...+++..........     ...+...+.            
T Consensus       162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~------------  224 (333)
T d1ri6a_         162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-----VQTLDMMPE------------  224 (333)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-----EEEEECSCT------------
T ss_pred             cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee-----eeeeeeeec------------
Confidence            2211      11233456789999998877654 44566677765432110000     000000000            


Q ss_pred             eccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEe-eCCCcEEEEecccceeeeEeecccceEEEeeCcccc
Q psy6984         258 TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSS-SRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVV  336 (380)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (380)
                                          ..........+++++++++++.. ..++.+.+|+.........       .....     
T Consensus       225 --------------------~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----  272 (333)
T d1ri6a_         225 --------------------NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS-------KEGFQ-----  272 (333)
T ss_dssp             --------------------TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE-------EEEEE-----
T ss_pred             --------------------CCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE-------EEEEe-----
Confidence                                00111234467889999876654 4578899997643322110       00000     


Q ss_pred             cccCCCCCCceEEEEEecCCCEEEEEe-eCCeEEEEEeee
Q psy6984         337 SQSTKADPPMCLSLAWSTDGQTLFAGY-SDNTIRVWQVSV  375 (380)
Q Consensus       337 ~~~~~~~~~~~~~~~~s~dg~~l~~g~-~dg~v~iw~~~~  375 (380)
                           .....+..++|||||++|++++ .++.|++|++..
T Consensus       273 -----~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         273 -----PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             -----ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             -----CCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence                 0112235689999999987655 578999998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=1.7e-17  Score=144.77  Aligned_cols=282  Identities=9%  Similarity=-0.006  Sum_probs=173.6

Q ss_pred             cCCCcceEEEEEccCCCEEEEEe-----CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------
Q psy6984          61 KGHSHFISDIVLSSDGNYALSGS-----WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------  125 (380)
Q Consensus        61 ~~h~~~v~~~~~~~~~~~l~s~~-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------  125 (380)
                      ..+...+..++++|||+.++...     ..+.|.+||..+++.+..+..+..+  .++|+|||+++++++          
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            45677888999999999987642     3457999999999999888766543  689999999998875          


Q ss_pred             CCCcEEEEeCCCcceEEEeeCCCcC------cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEE
Q psy6984         126 RDKTIKLWNTLAHCKFTIVEDGHSD------WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTV  199 (380)
Q Consensus       126 ~d~~v~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~  199 (380)
                      .++.|.+||..+.+....+......      ....+.|+++++..++.....++.+.+|+....+...    +.....++
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ----LLSSPTCY  170 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE----EeccceeE
Confidence            4578999998776554433221111      1234678887765444555556788888887765432    23346678


Q ss_pred             EEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEEec-------CceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984         200 TVSPDGSL-CASGGKDMNAMLWDLNDGKHLHTLVHN-------DIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH  271 (380)
Q Consensus       200 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (380)
                      .++|+|+. +++.+.|+.+.+|+...++........       .......+.+++.+...       .....+.+++...
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~  243 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-------VYSGKILQADISA  243 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe-------cCCceEEEEEcCC
Confidence            89999875 468889999999999887766544211       11122223333222111       1123333444333


Q ss_pred             ceeee--ee----------eccccceeEEEEeecCCEEEEe----------eCCCcEEEEecccceeeeEeecccceEEE
Q psy6984         272 GKMET--PF----------FSLFRDVLSVAFSVDNRQIVSS----------SRDKTIKLWNTLAHCKFTIVDLETKKMVE  329 (380)
Q Consensus       272 ~~~~~--~~----------~~~~~~v~~~~~s~~~~~l~s~----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  329 (380)
                      .....  ..          .........++++|++..++..          ..++.+.+||.           .+.+.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~-----------~t~~~~~  312 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG-----------LVGQTSS  312 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC-----------CCCcEEE
Confidence            22110  00          0011123345666666655443          33445555554           3333333


Q ss_pred             eeCcccccccCCCCCCceEEEEEecCCCE--EEEEeeCCeEEEEEeeee
Q psy6984         330 ELRPDVVSQSTKADPPMCLSLAWSTDGQT--LFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--l~~g~~dg~v~iw~~~~~  376 (380)
                      .+.          ....+..++|||||+.  +++++.|+.|++||+...
T Consensus       313 ~~~----------~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         313 QIS----------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             Eec----------CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            221          1234568999999984  467889999999998654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=2e-16  Score=137.82  Aligned_cols=289  Identities=9%  Similarity=-0.018  Sum_probs=187.9

Q ss_pred             cCcccceEEEEeCCCCCCeEEEe-----eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe----
Q psy6984          13 NGHNGWVTQIATNPKFPDTILSC-----SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS----   83 (380)
Q Consensus        13 ~~h~~~v~~i~~~~~~~~~l~t~-----~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----   83 (380)
                      ..|.+++.+++++|+ +..++..     +.++.|.+||......     ..++..+.  ...++|+|||++|++++    
T Consensus        17 ~~~~~p~~~~a~spd-g~~~~~~~~~~~~~~~~v~v~D~~tg~~-----~~~~~~~~--~~~~a~SpDG~~l~va~~~~~   88 (373)
T d2madh_          17 GAADGPTNDEAPGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSI-----LGHVNGGF--LPNPVAAHSGSEFALASTSFS   88 (373)
T ss_pred             ccCCCCccccccCCC-CCEEEEEcccccCCCceEEEEECCCCCE-----EEEEeCCC--CccEEEcCCCCEEEEEeecCC
Confidence            467889999999998 5565543     2345688887654332     12233333  23689999999998875    


Q ss_pred             ------CCCcEEEEECCCCceeeeecccCCCe-------EEEEEeCCCCEEEEEe--CCCcEEEEeCCCcceEEEeeCCC
Q psy6984          84 ------WDKTLRLWDLAAGKTTRRFEDHTKDV-------LSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVEDGH  148 (380)
Q Consensus        84 ------~d~~i~vwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~s~~--~d~~v~iwd~~~~~~~~~~~~~~  148 (380)
                            .++.|.+||..+++....+..+....       ..+.|+++++.++...  .++.+.+|+........     +
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~-----~  163 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQ-----L  163 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEE-----E
Confidence                  45789999999999888776554433       4578888888765543  45678888865543322     2


Q ss_pred             cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC------CccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         149 SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG------HTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       149 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      .....++.++|+++. .+++.+.|+.+.+|+....+.......      .........+++++.+ +..+.++.+.+|+.
T Consensus       164 ~~~~~~~~~s~~g~~-~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  241 (373)
T d2madh_         164 LSSPTCYHIHPGAPS-TFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADI  241 (373)
T ss_pred             eccceeEEEecCCCc-EEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEc
Confidence            233567889998754 677888999999999987665543322      1222344555666555 45667889999998


Q ss_pred             CCCcEEEEEE-------------ecCceEEEEeecCcccceeee----eeeeeccccceEEEEcCCceeeeeeeccccce
Q psy6984         223 NDGKHLHTLV-------------HNDIITALCFSPNRSFQKIKL----DISRTLQKSNLILYPINHGKMETPFFSLFRDV  285 (380)
Q Consensus       223 ~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  285 (380)
                      ..........             .......+++++++.......    ..........+.+|+..+++....+ .+...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~  320 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDV  320 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe-cCCCCe
Confidence            8765432221             112233455566554322111    1112233456778888888766543 455678


Q ss_pred             eEEEEeecCCE--EEEeeCCCcEEEEecccceee
Q psy6984         286 LSVAFSVDNRQ--IVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       286 ~~~~~s~~~~~--l~s~~~dg~v~iw~~~~~~~~  317 (380)
                      ..++|+|||+.  +++++.|++|++||+.+++.+
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            89999999984  467889999999987655443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.6e-14  Score=123.39  Aligned_cols=257  Identities=14%  Similarity=0.228  Sum_probs=164.6

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeE-EEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTI-LSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW   84 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l-~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   84 (380)
                      +++...+ +|.+.|..|+++|+ +++| +++..|+.|++|++.........  .....+...+..++|+|||++|++++.
T Consensus        27 l~~~~~~-~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~--~~~~~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          27 LTLTQVV-DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTF--AAESALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             EEEEEEE-ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEE--EEEEECSSCCSEEEECTTSSEEEEEET
T ss_pred             eEEEEEE-cCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEE--eeecccCCCceEEEEcCCCCEEeeccc
Confidence            3444333 57889999999998 6666 45556899999998754322111  111223345678999999999999885


Q ss_pred             -CCcEEEEECCCCceeee--ecccCCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCcceEE-----EeeCCCcCcEEEE
Q psy6984          85 -DKTLRLWDLAAGKTTRR--FEDHTKDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFT-----IVEDGHSDWVSCV  155 (380)
Q Consensus        85 -d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~s~~~-d~~v~iwd~~~~~~~~-----~~~~~~~~~v~~~  155 (380)
                       ++.|.+|+.........  ...+...+.++.++|+++.++.++. +..+.+|+........     ............+
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i  182 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM  182 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred             CCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEE
Confidence             66899998876654433  3456667888999999999887764 4578889865432221     1222334556789


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEeCCCce--ee--Eeee------CCccceEEEEEcCCCCEEEE-EcCCCcEEEEECCC
Q psy6984         156 RFSPNHQNPIIVSAGWDRMVKVWNLTNCK--LK--INHS------GHTGYLNTVTVSPDGSLCAS-GGKDMNAMLWDLND  224 (380)
Q Consensus       156 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~--~~~~------~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~  224 (380)
                      +|++++.. .+.+....+...+|+.....  ..  ....      ........+++++++++++. +..++.+.+|++..
T Consensus       183 ~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         183 VFHPNEQY-AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  261 (333)
T ss_dssp             EECTTSSE-EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEecccee-EEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence            99987642 34455566778888765322  11  1111      12345677889999986554 55677888887754


Q ss_pred             CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEee-CC
Q psy6984         225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSS-RD  303 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d  303 (380)
                      .........                                            .......+..++|+|||++|++++ .+
T Consensus       262 ~~~~~~~~~--------------------------------------------~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         262 DGSVLSKEG--------------------------------------------FQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             TSCCEEEEE--------------------------------------------EEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             CCCEEEEEE--------------------------------------------EeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence            322111100                                            000112345789999999877665 46


Q ss_pred             CcEEEEec
Q psy6984         304 KTIKLWNT  311 (380)
Q Consensus       304 g~v~iw~~  311 (380)
                      ++|++|++
T Consensus       298 ~~v~v~~i  305 (333)
T d1ri6a_         298 HHISVYEI  305 (333)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEE
Confidence            89999965

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.4e-15  Score=131.40  Aligned_cols=280  Identities=10%  Similarity=0.061  Sum_probs=168.4

Q ss_pred             EeCCCCCCeEEEe-----eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE----------eCCCc
Q psy6984          23 ATNPKFPDTILSC-----SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG----------SWDKT   87 (380)
Q Consensus        23 ~~~~~~~~~l~t~-----~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----------~~d~~   87 (380)
                      +.+|+ +..++..     ..+++|.+||......     ...+..+  ....++|+|||++|++.          ..|+.
T Consensus         8 a~spd-g~~~~v~~~~~~~~~~~v~v~D~~tg~~-----~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           8 APAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRV-----IGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             CCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEE-----EEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             eeCCC-CCEEEEEecccCCCcCeEEEEECCCCcE-----EEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            45666 5565543     3456799999765422     2223333  33468999999988764          34789


Q ss_pred             EEEEECCCCceeeeecccCC-------CeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEc
Q psy6984          88 LRLWDLAAGKTTRRFEDHTK-------DVLSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFS  158 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  158 (380)
                      |++||+.+++.+..+..+..       ....++|+|+++.++.++  .+..+.+|+..+......+......  .  . .
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~-~  154 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY--H--I-F  154 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE--E--E-E
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc--e--E-e
Confidence            99999999988877643322       234679999999887765  4568899998776555443322111  1  0 1


Q ss_pred             cCCCCCEEEEEeCCCeEEEEeCCCceeeEe------eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-
Q psy6984         159 PNHQNPIIVSAGWDRMVKVWNLTNCKLKIN------HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL-  231 (380)
Q Consensus       159 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-  231 (380)
                      +.+. ...+..+.|+...++..........      ...+...+....+.+++..++.++.++.+++|++..++..... 
T Consensus       155 ~~~~-~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  233 (355)
T d2bbkh_         155 PTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA  233 (355)
T ss_dssp             EEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCC
T ss_pred             ecCC-cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEec
Confidence            1111 1233344454444444332211110      1123334555677888889999999999999999877532211 


Q ss_pred             -E-----------ecCceEEEEeecCcccceeeeeeee----eccccceEEEEcCCceeeeeeeccccceeEEEEeecCC
Q psy6984         232 -V-----------HNDIITALCFSPNRSFQKIKLDISR----TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNR  295 (380)
Q Consensus       232 -~-----------~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  295 (380)
                       .           .......+++++++...........    ......+.+|+..+++....+. ....+.+++|+|||+
T Consensus       234 ~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~  312 (355)
T d2bbkh_         234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEK  312 (355)
T ss_dssp             EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSS
T ss_pred             cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCC
Confidence             1           1122334666776654332221110    1122457789988887655443 345578999999998


Q ss_pred             --EEEEeeCCCcEEEEecccceee
Q psy6984         296 --QIVSSSRDKTIKLWNTLAHCKF  317 (380)
Q Consensus       296 --~l~s~~~dg~v~iw~~~~~~~~  317 (380)
                        ++++++.|++|++||..+++.+
T Consensus       313 ~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         313 PLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             CEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEEEECCCCEEEEEECCCCCEE
Confidence              3567778999999987655443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.6e-15  Score=131.00  Aligned_cols=274  Identities=11%  Similarity=0.023  Sum_probs=157.3

Q ss_pred             EEEccCCCEEEEEe-----CCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEE----------eCCCcEEEEe
Q psy6984          70 IVLSSDGNYALSGS-----WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSS----------SRDKTIKLWN  134 (380)
Q Consensus        70 ~~~~~~~~~l~s~~-----~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~----------~~d~~v~iwd  134 (380)
                      .+.+||++++++..     .+..|.+||..+++.+.++..+..+  .++|+|||++++++          ..|+.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            34589999987764     3557999999999999888765444  68999999988764          3578999999


Q ss_pred             CCCcceEEEeeC--CC----cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCcc-------ceEEEEE
Q psy6984         135 TLAHCKFTIVED--GH----SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTG-------YLNTVTV  201 (380)
Q Consensus       135 ~~~~~~~~~~~~--~~----~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-------~i~~~~~  201 (380)
                      ..+......+..  .+    ......++|+|++...+++..+.+..+.+|+..+.+.......+..       ....+.+
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence            877655443321  11    1122457899987653444446678899999998876655443321       1233455


Q ss_pred             cCCCCEEEEEc-CCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee--ee
Q psy6984         202 SPDGSLCASGG-KDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET--PF  278 (380)
Q Consensus       202 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  278 (380)
                      +++++.++... .++.+.+++.......    +...+....+.++...      +.....++.+++|+...++...  ..
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQKAGR------LVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCCSCT----TSCBCSCCEEETTTTE------EEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             cCCCCEEEEEecCCCeEEEEecccccce----ecceeeeccccCCCCe------EEEecCCCeEEEEecCCCcEEEEecc
Confidence            66665544332 2344444443332211    1111222233332211      1111234566777766554321  11


Q ss_pred             eccc----------cceeEEEEeecCCEEEEeeCCC----------cEEEEecccceeeeEeecccceEEEeeCcccccc
Q psy6984         279 FSLF----------RDVLSVAFSVDNRQIVSSSRDK----------TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQ  338 (380)
Q Consensus       279 ~~~~----------~~v~~~~~s~~~~~l~s~~~dg----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (380)
                      ..+.          .....++++|++..++....++          .|.+||..++.           .+..+..     
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~-----------~~~~~~~-----  298 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-----------RLAKFEM-----  298 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC-----------EEEEEEE-----
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc-----------EEEEecC-----
Confidence            1111          1223467777777766544332          46666654433           2222211     


Q ss_pred             cCCCCCCceEEEEEecCCCE--EEEEeeCCeEEEEEeeee
Q psy6984         339 STKADPPMCLSLAWSTDGQT--LFAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       339 ~~~~~~~~~~~~~~s~dg~~--l~~g~~dg~v~iw~~~~~  376 (380)
                           ...+.+++|+|||+.  +++++.|+.|++||+...
T Consensus       299 -----~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         299 -----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             -----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             -----CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence                 112457899999983  456677999999997543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.61  E-value=4.3e-13  Score=120.34  Aligned_cols=143  Identities=15%  Similarity=0.191  Sum_probs=101.5

Q ss_pred             EEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeC---------CCcEEEE
Q psy6984          21 QIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSW---------DKTLRLW   91 (380)
Q Consensus        21 ~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---------d~~i~vw   91 (380)
                      ++.|.++ ++++.  ..|+.+.+||+.......-+....+..|...|.++.|||||++|+.++.         ++.+.+|
T Consensus        21 ~~~W~~d-~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISD-HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSS-SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCC-CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            4668776 45554  3578899999876543322334566778888999999999999998753         5678999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCc-----------------CcEEE
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHS-----------------DWVSC  154 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~-----------------~~v~~  154 (380)
                      |+.+++. ..+..+...+..+.|||||+.+|.. .++.+.+|+..++........+..                 .....
T Consensus        98 d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            9998764 4577888899999999999999986 456789998766544333221111                 12345


Q ss_pred             EEEccCCCCCEEEEEe
Q psy6984         155 VRFSPNHQNPIIVSAG  170 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~  170 (380)
                      +.|+|+++.  |+...
T Consensus       176 ~~wSPDGk~--ia~~~  189 (470)
T d2bgra1         176 LWWSPNGTF--LAYAQ  189 (470)
T ss_dssp             EEECTTSSE--EEEEE
T ss_pred             cEECCCCCc--cceeE
Confidence            779998863  54443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=4e-13  Score=116.52  Aligned_cols=288  Identities=9%  Similarity=-0.024  Sum_probs=169.0

Q ss_pred             ccceEEEEeCCCCCCe---EEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe---------
Q psy6984          16 NGWVTQIATNPKFPDT---ILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS---------   83 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~---l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---------   83 (380)
                      .+....+...++ +..   .++...+|+.++|-++.....   ......++..  ..++++|||+.|++.+         
T Consensus        19 ~g~~~~~a~~~~-~~~~~v~~~~~~~g~~~~~~~d~~~~~---~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          19 DGSSCDHGPGAI-SRRSHITLPAYFAGTTENWVSCAGCGV---TLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCBCCCCCCC-TTEEEEEECTTTCSSEEEEEEETTTTE---EEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSS
T ss_pred             CCCccccccCCC-CcceeEEeeccCCCcceEEEEeCCCCc---EEEEEeCCCC--CcceECCCCCEEEEEcccCcccccc
Confidence            344444555555 332   233456666666644322111   1122333332  3588999999988764         


Q ss_pred             -CCCcEEEEECCCCceeeeecccCC-------CeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCCCcCcEEE
Q psy6984          84 -WDKTLRLWDLAAGKTTRRFEDHTK-------DVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDGHSDWVSC  154 (380)
Q Consensus        84 -~d~~i~vwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  154 (380)
                       .|+.|.+||..+++.+..+..+..       ....++|+|||++++.+. .++.+.+||+.+.............    
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~----  168 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF----  168 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC----
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc----
Confidence             367899999999998887654322       234689999999998776 5799999998776555444322211    


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe------eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Q psy6984         155 VRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN------HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHL  228 (380)
Q Consensus       155 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  228 (380)
                       .+.|.+. ..++..+.|+.+.++++........      ...+...+....+.+++..+.+.  .+.+++++...+...
T Consensus       169 -~~~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~  244 (368)
T d1mdah_         169 -HIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGAT  244 (368)
T ss_dssp             -CCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCE
T ss_pred             -eEccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceE
Confidence             1122222 3566777888988888765432211      12233445566777887766544  445666666554433


Q ss_pred             EEEE-------------ecCceEEEEeecCcccceeeeeeee---eccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         229 HTLV-------------HNDIITALCFSPNRSFQKIKLDISR---TLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       229 ~~~~-------------~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      ....             .......+++++++...........   ......+.+|+..+++....+. ....+.+++|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~sp  323 (368)
T d1mdah_         245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQ  323 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECC
T ss_pred             EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECC
Confidence            2211             1111234556666543322211110   1122357788888887654443 335678899999


Q ss_pred             cCCE--EEEeeCCCcEEEEecccceeee
Q psy6984         293 DNRQ--IVSSSRDKTIKLWNTLAHCKFT  318 (380)
Q Consensus       293 ~~~~--l~s~~~dg~v~iw~~~~~~~~~  318 (380)
                      ||+.  ++++..|++|++||..+++.+.
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence            9973  4667789999999876665443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.53  E-value=4.5e-14  Score=122.63  Aligned_cols=278  Identities=9%  Similarity=0.054  Sum_probs=165.1

Q ss_pred             EEEEeCCCcEEEEECCCCceeeeecc------------------------------cCCCeEEEEEeCCCCEEEE-EeCC
Q psy6984          79 ALSGSWDKTLRLWDLAAGKTTRRFED------------------------------HTKDVLSVAFSVDNRQIVS-SSRD  127 (380)
Q Consensus        79 l~s~~~d~~i~vwd~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~~~~s-~~~d  127 (380)
                      +++|+.+|.|.+|++.+++.++++..                              |........++|||++++. ...+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56788899999999988877665421                              2333444556799998855 4578


Q ss_pred             CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC-----------------eEEEEeCCCceeeEeee
Q psy6984         128 KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR-----------------MVKVWNLTNCKLKINHS  190 (380)
Q Consensus       128 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~-----------------~v~iwd~~~~~~~~~~~  190 (380)
                      ++|.++|+.+......+...+......++|+|+++..+++..+.+.                 .+..+|..+.+......
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8999999988766666655667778999999998876666555432                 23446777666554443


Q ss_pred             CCccceEEEEEcCCCCEEEEEcCCC-cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEc
Q psy6984         191 GHTGYLNTVTVSPDGSLCASGGKDM-NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPI  269 (380)
Q Consensus       191 ~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (380)
                      .. +.+..+.++|+|+++++++.+. .+..++..+.+....+........+.++|++.+..+.       ......+...
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~-------~~~v~vvd~~  245 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-------DSKVPVVDGR  245 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT-------TCCCCEEECS
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC-------CCCcEEEEcc
Confidence            22 3467789999999988887653 3333343333322222222222233345565543221       1122223322


Q ss_pred             CCceeeeeeeccccceeEEEEeecCCEEE-EeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceE
Q psy6984         270 NHGKMETPFFSLFRDVLSVAFSVDNRQIV-SSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCL  348 (380)
Q Consensus       270 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (380)
                      ...+... ..........+.++|||++++ ++..+++|.+||+.+-.+.  +  +..     +................+
T Consensus       246 ~~~~v~~-~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~--~--~~~-----~~~~~~~~~~~~~glgpl  315 (441)
T d1qnia2         246 GESEFTR-YIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--F--EDK-----IELRDTIVAEPELGLGPL  315 (441)
T ss_dssp             SSCSSEE-EECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--T--TTS-----SCGGGGEEECCBCCSCEE
T ss_pred             cCCceEE-EEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH--h--hcc-----CCcceEEEeecccccCcc
Confidence            2222221 222234456799999999865 5677999999997431110  0  000     000000000111112234


Q ss_pred             EEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         349 SLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       349 ~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      ..+|.++|..+.+.+.|..|..|+++
T Consensus       316 h~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         316 HTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cceecCCceEEEcccccceEEEeccc
Confidence            56899999888888899999999975

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=2e-12  Score=115.91  Aligned_cols=115  Identities=10%  Similarity=0.001  Sum_probs=84.6

Q ss_pred             EecCcccceEEEEeCCCCCCeEEEeeC---------CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEE
Q psy6984          11 TLNGHNGWVTQIATNPKFPDTILSCSR---------DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALS   81 (380)
Q Consensus        11 ~~~~h~~~v~~i~~~~~~~~~l~t~~~---------dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s   81 (380)
                      +|.+|...|.++.|+|+ +++|+.++.         ++.+.+||+....      ...+..|...+..+.|||||+++|.
T Consensus        56 ~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~------~~~l~~~~~~~~~~~~SPDG~~ia~  128 (470)
T d2bgra1          56 TFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDLNKRQ------LITEERIPNNTQWVTWSPVGHKLAY  128 (470)
T ss_dssp             TTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTE------ECCSSCCCTTEEEEEECSSTTCEEE
T ss_pred             hhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEEEEECCCCc------ccccccCCccccccccccCcceeeE
Confidence            45566788999999998 678777643         5677899876532      2346678888999999999999998


Q ss_pred             EeCCCcEEEEECCCCceeeeeccc------------------CCCeEEEEEeCCCCEEEEEeCCCc-EEEE
Q psy6984          82 GSWDKTLRLWDLAAGKTTRRFEDH------------------TKDVLSVAFSVDNRQIVSSSRDKT-IKLW  133 (380)
Q Consensus        82 ~~~d~~i~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~s~~~d~~-v~iw  133 (380)
                      .. +..+++|+..+++..+....+                  .+....+.|+|||+.++....|.. +..|
T Consensus       129 ~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         129 VW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            64 678999999888765543221                  223456889999999998876543 4444

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=1.9e-12  Score=112.12  Aligned_cols=158  Identities=6%  Similarity=-0.077  Sum_probs=102.7

Q ss_pred             CCcceEEEEEccCCCEEEE---EeCCC--cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe----------CC
Q psy6984          63 HSHFISDIVLSSDGNYALS---GSWDK--TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS----------RD  127 (380)
Q Consensus        63 h~~~v~~~~~~~~~~~l~s---~~~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~----------~d  127 (380)
                      +......++..++++....   ...++  .|.+||..+++.+..+..+..+  .++|+|||+.++..+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            3334445566778875432   33444  4777799999998887766554  588999999888754          46


Q ss_pred             CcEEEEeCCCcceEEEeeCCC------cCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEE
Q psy6984         128 KTIKLWNTLAHCKFTIVEDGH------SDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTV  201 (380)
Q Consensus       128 ~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~  201 (380)
                      +.|.+||..+......+....      ......++|+|+++. ++++...++.+.+||+.+.+.......+.....   .
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~  171 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---H  171 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---E
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---c
Confidence            789999987765544432111      111235899999864 444555689999999999887766554433211   1


Q ss_pred             cCCCCEEEEEcCCCcEEEEECCCCc
Q psy6984         202 SPDGSLCASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       202 ~~~~~~l~~~~~d~~i~i~d~~~~~  226 (380)
                      ......++..+.|+.+.++++....
T Consensus       172 ~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         172 PGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             EEETTEEECCCCTTSCEEEECCSSC
T ss_pred             cCCCceEEEEcCCCCEEEEEecCCc
Confidence            1234466667778888888765543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.42  E-value=1.4e-13  Score=119.48  Aligned_cols=319  Identities=10%  Similarity=0.008  Sum_probs=178.7

Q ss_pred             EEEeeCCCeEEEeecCCCCCCccccc-------------------------ccccCCCcceEEEEEccCCCEEEEEe-CC
Q psy6984          32 ILSCSRDNTLIIWKLTRDDTNYGVPQ-------------------------KRLKGHSHFISDIVLSSDGNYALSGS-WD   85 (380)
Q Consensus        32 l~t~~~dg~v~vw~~~~~~~~~~~~~-------------------------~~~~~h~~~v~~~~~~~~~~~l~s~~-~d   85 (380)
                      ++|++.+|.|++|++...+....++.                         .....|.........+|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67788899999999864321111110                         01123445566666789999996664 67


Q ss_pred             CcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCC--EEEEEeCCCc-----------------EEEEeCCCcceEEEee
Q psy6984          86 KTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNR--QIVSSSRDKT-----------------IKLWNTLAHCKFTIVE  145 (380)
Q Consensus        86 ~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~~~s~~~d~~-----------------v~iwd~~~~~~~~~~~  145 (380)
                      ..|.++|+.+.+..+.+. .+...+..++|+|+++  +++..+.+..                 +..+|..+......+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            899999999998877664 3567789999999998  4444444321                 2234444333222222


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEeCC-CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCC
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAGWD-RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLND  224 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~  224 (380)
                      -+  .....+.++|+++  .+++.+.+ ..+..++..+.......... .....+.+.|+|+++..+ .++.+.+++...
T Consensus       174 v~--~~p~~v~~spdGk--~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~  247 (441)
T d1qnia2         174 VD--GNLDNTDADYTGK--YATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIG-DSKVPVVDGRGE  247 (441)
T ss_dssp             ES--SCCCCEEECSSSS--EEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCT-TCCCCEEECSSS
T ss_pred             cC--CCccceEECCCCC--EEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEEeC-CCCcEEEEcccC
Confidence            11  1245678888875  34443333 23333332222111110000 011223457889887654 456777777776


Q ss_pred             CcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee--------eeeeeccc---cceeEEEEeec
Q psy6984         225 GKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM--------ETPFFSLF---RDVLSVAFSVD  293 (380)
Q Consensus       225 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~v~~~~~s~~  293 (380)
                      .+.+..+........+.++|++.+....     ...+..+.+|++...+.        ...+....   -...-.+|.++
T Consensus       248 ~~v~~~IPvgksPhGv~vSPDGkyl~~~-----~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~  322 (441)
T d1qnia2         248 SEFTRYIPVPKNPHGLNTSPDGKYFIAN-----GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGR  322 (441)
T ss_dssp             CSSEEEECCBSSCCCEEECTTSCEEEEE-----CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred             CceEEEEeCCCCccCceECCCCCEEEEe-----CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCC
Confidence            6667777666667789999999875433     23456677888743210        01111111   11234589999


Q ss_pred             CCEEEEeeCCCcEEEEecccceeeeEeecc-cceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEE---eeCCe
Q psy6984         294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLE-TKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAG---YSDNT  367 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g---~~dg~  367 (380)
                      |..+.|..-|.+|.-|++....+.  +..+ ....+..+..    .....|...+.+..++|||++|+++   |.|+.
T Consensus       323 g~~yts~~~ds~v~kw~~~~~~~~--~~~~~~~~v~~~~~v----~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         323 GNAYTTLFIDSQVCKWNIADAIKH--YNGDRVNYIRQKLDV----QYQPGHNHASLTESRDADGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             SEEEEEETTTTEEEEEEHHHHHHH--HTTCCCCCEEEEEEC----SSCEEEEEETTTTSTTCCCCEEEEEESCCGGGS
T ss_pred             ceEEEcccccceEEEeccchhhhh--hccCCCceeEecccc----ccCCCCCccccccccCCCCcEEEecCccccccC
Confidence            988888889999999996321100  0000 0011111100    0011222223345689999999999   55653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=9.8e-09  Score=88.10  Aligned_cols=247  Identities=7%  Similarity=0.002  Sum_probs=136.4

Q ss_pred             CcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCC-
Q psy6984          64 SHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSS---RDKTIKLWNTLA-  137 (380)
Q Consensus        64 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~---~d~~v~iwd~~~-  137 (380)
                      ...+..+++++++++|++... +.+..|.+..........  ........++++++++.+....   ..+.+..+.... 
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            344567999999999988765 467777665432222111  1223345567788887543222   234444432211 


Q ss_pred             -----------c----ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc-eeeE----eeeCCccceE
Q psy6984         138 -----------H----CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC-KLKI----NHSGHTGYLN  197 (380)
Q Consensus       138 -----------~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~----~~~~~~~~i~  197 (380)
                                 .    .............+.++.|+|+++. ++++......|.+|+.... .+..    ..........
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~-l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY-LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCE-EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence                       0    0011111122335789999998763 3333344567888876532 2211    1112345678


Q ss_pred             EEEEcCCCCEE-EEEcCCCcEEEEECCCCcEE--EEEE------------------ecCceEEEEeecCcccceeeeeee
Q psy6984         198 TVTVSPDGSLC-ASGGKDMNAMLWDLNDGKHL--HTLV------------------HNDIITALCFSPNRSFQKIKLDIS  256 (380)
Q Consensus       198 ~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~--~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~~  256 (380)
                      .++|+|+++++ ++...++.|.+|++..++..  ....                  .......+.++|++.+........
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            89999999977 45567899999998765422  1111                  011245788999988754433211


Q ss_pred             eeccccceEEEEcCCc-eeeeeee-----ccccceeEEEEee-cCCEEEEe-eCCCcEEEEecc
Q psy6984         257 RTLQKSNLILYPINHG-KMETPFF-----SLFRDVLSVAFSV-DNRQIVSS-SRDKTIKLWNTL  312 (380)
Q Consensus       257 ~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~v~~~~~s~-~~~~l~s~-~~dg~v~iw~~~  312 (380)
                      .......+..+.+... .+.....     ........++++| +|++|+.+ ..++.|.+|+..
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            1112223555555432 2211111     1122346789998 78987666 467999999753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=4.2e-07  Score=74.55  Aligned_cols=259  Identities=14%  Similarity=0.227  Sum_probs=160.4

Q ss_pred             CcceeeEEeEEecCc------ccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccc-cccCCCcceEEEEEc
Q psy6984           1 MSTETLQLRGTLNGH------NGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQK-RLKGHSHFISDIVLS   73 (380)
Q Consensus         1 ~~~~~~~~~~~~~~h------~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~   73 (380)
                      |..++..+.+.+-+.      -.....|++.++ ++++++-...+.|++|+.+.. ........ ...+.......+++.
T Consensus         1 ~~~~~~~~~~~~G~~G~~~g~f~~P~gvavd~d-g~i~VaD~~n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~   78 (279)
T d1q7fa_           1 IKRQRMIYHCKFGEFGVMEGQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVV   78 (279)
T ss_dssp             CCCEEECEEEEECCBSSSTTCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEE
T ss_pred             CCcceEEEEeecCCCcCCCCeECCccEEEEcCC-CCEEEEECCCCEEEEEeCCCC-EEEEecccCCCccccccccccccc
Confidence            566777777776432      234688999987 677777667789999986532 11111100 011222234556665


Q ss_pred             cCC-CEEEEE-eCCCcEEEEECCCCceeeeec-ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcC
Q psy6984          74 SDG-NYALSG-SWDKTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSD  150 (380)
Q Consensus        74 ~~~-~~l~s~-~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  150 (380)
                      ++. .++++. +.++.|.+++. .++....+. ........+++.+++..+++....+.+.+++.........-...+..
T Consensus        79 ~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~  157 (279)
T d1q7fa_          79 RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLE  157 (279)
T ss_dssp             TTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCS
T ss_pred             ccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccccccc
Confidence            554 344433 34567777775 455555543 34456788999999998888888888888875543322222344556


Q ss_pred             cEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEee--eCCccceEEEEEcCCCCEEEEEcC-CCcEEEEECCCCcE
Q psy6984         151 WVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINH--SGHTGYLNTVTVSPDGSLCASGGK-DMNAMLWDLNDGKH  227 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~  227 (380)
                      ....+++.+++  .++++....+.|++||..... ...+  .+....+..++++|+|+++++-.. ++.|.+|+. +++.
T Consensus       158 ~~~~i~~d~~g--~i~v~d~~~~~V~~~d~~G~~-~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~  233 (279)
T d1q7fa_         158 FPNGVVVNDKQ--EIFISDNRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL  233 (279)
T ss_dssp             SEEEEEECSSS--EEEEEEGGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE
T ss_pred             ccceeeeccce--eEEeeeccccceeeeecCCce-eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCE
Confidence            67888888764  367777778899999976533 3232  234556888999999998777544 456888874 3443


Q ss_pred             EEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEE
Q psy6984         228 LHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIK  307 (380)
Q Consensus       228 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~  307 (380)
                      +..+....                                             .......+++.|+|.++++ +.+..|+
T Consensus       234 ~~~~~~~~---------------------------------------------~~~~p~~vav~~dG~l~V~-~~n~~v~  267 (279)
T d1q7fa_         234 ISALESKV---------------------------------------------KHAQCFDVALMDDGSVVLA-SKDYRLY  267 (279)
T ss_dssp             EEEEEESS---------------------------------------------CCSCEEEEEEETTTEEEEE-ETTTEEE
T ss_pred             EEEEeCCC---------------------------------------------CCCCEeEEEEeCCCcEEEE-eCCCeEE
Confidence            32221100                                             0012356888999876554 5789999


Q ss_pred             EEecc
Q psy6984         308 LWNTL  312 (380)
Q Consensus       308 iw~~~  312 (380)
                      +|+..
T Consensus       268 ~fr~~  272 (279)
T d1q7fa_         268 IYRYV  272 (279)
T ss_dssp             EEECS
T ss_pred             EEEee
Confidence            99753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=2.5e-08  Score=81.19  Aligned_cols=237  Identities=8%  Similarity=0.013  Sum_probs=139.5

Q ss_pred             cceEEEEEccCCCEEEEE-eCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEE
Q psy6984          65 HFISDIVLSSDGNYALSG-SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTI  143 (380)
Q Consensus        65 ~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~  143 (380)
                      ..-..++++++|+..++. +..+.|..++............-......+++++++..+++....+.+++++......  .
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~--~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT--V   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE--E
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee--e
Confidence            345789999999966654 4557777776654333222222123456789999999888877777777665333222  2


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      ..........++++.+++.  ++++-..+..+..++...................++++|+|+++++...++.|..+|..
T Consensus        92 ~~~~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~  169 (260)
T d1rwia_          92 LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE  169 (260)
T ss_dssp             CCCCSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred             eeeeeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccc
Confidence            2222234578899988653  55555556667777765543332222223456789999999998888888999999987


Q ss_pred             CCcEEEEE-EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeC
Q psy6984         224 DGKHLHTL-VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSR  302 (380)
Q Consensus       224 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  302 (380)
                      ........ ..-.....+++.+++.....      ....+.+..+....................|+++++|..+++-..
T Consensus       170 ~~~~~~~~~~~~~~p~gi~~d~~g~l~vs------d~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         170 SNNQVVLPFTDITAPWGIAVDEAGTVYVT------EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             TCCEEECCCSSCCSEEEEEECTTCCEEEE------ETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             cceeeeeeccccCCCccceeeeeeeeeee------ecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence            65433222 22234567777776543211      112233444443332221111122234578999999888777666


Q ss_pred             CCcEEEEec
Q psy6984         303 DKTIKLWNT  311 (380)
Q Consensus       303 dg~v~iw~~  311 (380)
                      ++.|+..+.
T Consensus       244 ~~rI~~i~~  252 (260)
T d1rwia_         244 NDRVVKLTS  252 (260)
T ss_dssp             GTEEEEECC
T ss_pred             CCEEEEEeC
Confidence            677765543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=1.3e-07  Score=78.63  Aligned_cols=231  Identities=9%  Similarity=0.050  Sum_probs=143.4

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC--cceEEE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLA--HCKFTI  143 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~--~~~~~~  143 (380)
                      .+..++++|||+++++...++.|+.|+....  ...+......+.+++|++||+.+++...++.+..++...  ......
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            5778999999999999999999999886543  333445567789999999999999988888888777533  222233


Q ss_pred             eeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeeeC----------CccceEEEEEcCCCCEEEEEcC
Q psy6984         144 VEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHSG----------HTGYLNTVTVSPDGSLCASGGK  213 (380)
Q Consensus       144 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~  213 (380)
                      .........+.+.+.+++.  ++++.+.++.+..+|............          .....+.+.++. +.++++.+.
T Consensus       107 ~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~  183 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE  183 (302)
T ss_dssp             EECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT
T ss_pred             cccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCC
Confidence            3334455678888888753  667777788888888876554322211          112345555543 334555566


Q ss_pred             CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeec
Q psy6984         214 DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVD  293 (380)
Q Consensus       214 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  293 (380)
                      .+.|+.++.........                                 ...+            ........+++.++
T Consensus       184 ~~~i~~~~~~~~~~~~~---------------------------------~~~~------------~~~~~pdgia~d~d  218 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGE---------------------------------PEIF------------VEQTNIDDFAFDVE  218 (302)
T ss_dssp             TTEEEEEEBCTTSCBCC---------------------------------CEEE------------EESCCCSSEEEBTT
T ss_pred             CCeEEeccccccccccc---------------------------------cccc------------cCCCCCcceEECCC
Confidence            67777666543221100                                 0000            00112336899999


Q ss_pred             CCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEE---ecCCCEEEEEeeC
Q psy6984         294 NRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAW---STDGQTLFAGYSD  365 (380)
Q Consensus       294 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~g~~d  365 (380)
                      |+++++...++.|..++.... ...+....                  .......+++|   ++|++.|+.++..
T Consensus       219 G~l~va~~~~~~V~~i~p~G~-~~~~~~~~------------------~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         219 GNLYGATHIYNSVVRIAPDRS-TTIIAQAE------------------QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CCEEEECBTTCCEEEECTTCC-EEEEECGG------------------GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCEEEEEcCCCcEEEECCCCC-EEEEEecC------------------CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            998888778888888754221 11111100                  01122467899   7788988765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.8e-08  Score=78.82  Aligned_cols=215  Identities=12%  Similarity=0.111  Sum_probs=117.4

Q ss_pred             cEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          87 TLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK---TIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        87 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      .|+|.|....+. +.+..+...+...+|||||+.||-.....   .+.+.+..........  .+........++|++..
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--CCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe--eeecccccceecCCCCe
Confidence            578888764444 44445567788999999999998655433   3444444443333222  34566778899998764


Q ss_pred             CEEEEEeCCCeEEEE--eCCCceeeEeeeCCccceEEEEEcCCCCEEE-EEcCCC--cEEEEECCCCcEEEEEEecCceE
Q psy6984         164 PIIVSAGWDRMVKVW--NLTNCKLKINHSGHTGYLNTVTVSPDGSLCA-SGGKDM--NAMLWDLNDGKHLHTLVHNDIIT  238 (380)
Q Consensus       164 ~~l~s~~~d~~v~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~i~  238 (380)
                       +++....++...++  ........ .............+++++..+. +...++  .+.+.++..+.............
T Consensus        97 -i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~  174 (269)
T d2hqsa1          97 -LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ  174 (269)
T ss_dssp             -EEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE
T ss_pred             -eeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccc
Confidence             33333333333322  22222221 2222333344556677766544 444444  45556666665444444455566


Q ss_pred             EEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEeecCCEEEEeeCC---CcEEEEec
Q psy6984         239 ALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSVDNRQIVSSSRD---KTIKLWNT  311 (380)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~v~iw~~  311 (380)
                      ...|+|++........   ......+.+.+...+..  .............|||||+.|+..+..   ..++++++
T Consensus       175 ~~~~spdg~~~~~~~~---~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSS---NGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             EEEECTTSSEEEEEEE---CSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccccccceeEEEee---cCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            7788998776443221   11222344444444332  222334456678999999998765542   24555554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.11  E-value=4.7e-08  Score=83.72  Aligned_cols=276  Identities=9%  Similarity=0.030  Sum_probs=140.6

Q ss_pred             EEEEe--CCCcEEEEEC--CCCcee--eee-cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEe-eCCCcC
Q psy6984          79 ALSGS--WDKTLRLWDL--AAGKTT--RRF-EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIV-EDGHSD  150 (380)
Q Consensus        79 l~s~~--~d~~i~vwd~--~~~~~~--~~~-~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~  150 (380)
                      |+.|+  ..+.|.++.+  ++++..  ... ......+.-++|+|+++.+.++.. +.+..|.+......... ......
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            55554  2456655544  444332  111 223444667999999999988765 45777754432222111 111111


Q ss_pred             cEEEEEEccCCCCCEEEEEe-CCCeEEEEeCCCc-------------eee---Ee-eeCCccceEEEEEcCCCCEEEEEc
Q psy6984         151 WVSCVRFSPNHQNPIIVSAG-WDRMVKVWNLTNC-------------KLK---IN-HSGHTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       151 ~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~-------------~~~---~~-~~~~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      ....+.++++++..++++.. ..+.|..+.+...             ...   .. .......+.++.|+|+|+++++..
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            12345555655432333322 2344444433210             000   00 011123467899999999887765


Q ss_pred             C-CCcEEEEECCCCcEEE---EEE---ecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeee--e-----e
Q psy6984         213 K-DMNAMLWDLNDGKHLH---TLV---HNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMET--P-----F  278 (380)
Q Consensus       213 ~-d~~i~i~d~~~~~~~~---~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~  278 (380)
                      . ...|.+|+......+.   ...   .....+.++|+|++++.-+..     .....+.+|+...++...  .     +
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~-----e~~~~V~v~~~~~~~~~~~~~~~~~~~  238 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM-----EAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE-----TTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEec-----cCCCEEEEEEecCCCceEEEEeeeecc
Confidence            4 4578888765432221   111   245688999999987543322     234556666665433210  0     0


Q ss_pred             ------------eccccceeEEEEeecCCEEEEeeC-CC-----cEEEEecccceeeeEeecccceEEEeeCcccccccC
Q psy6984         279 ------------FSLFRDVLSVAFSVDNRQIVSSSR-DK-----TIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQST  340 (380)
Q Consensus       279 ------------~~~~~~v~~~~~s~~~~~l~s~~~-dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (380)
                                  .........+.++|||++|+++.+ +.     .|..|++.....+.        ....+      ...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~--------~~~~~------~~~  304 (365)
T d1jofa_         239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE--------KQLFL------SPT  304 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE--------EEEEE------EEC
T ss_pred             ccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee--------eEeEe------eEE
Confidence                        011122457899999999887643 22     25555432211110        00000      001


Q ss_pred             CCCCCceEEEEEec-CCCEEEEE-eeCCeEEEEEee
Q psy6984         341 KADPPMCLSLAWST-DGQTLFAG-YSDNTIRVWQVS  374 (380)
Q Consensus       341 ~~~~~~~~~~~~s~-dg~~l~~g-~~dg~v~iw~~~  374 (380)
                      .........++++| +|++|+++ ..++.|.+|++.
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            11122234688898 89988765 478999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.10  E-value=1.4e-07  Score=78.41  Aligned_cols=206  Identities=8%  Similarity=0.041  Sum_probs=137.2

Q ss_pred             eEEeEEecCcccceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC
Q psy6984           6 LQLRGTLNGHNGWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD   85 (380)
Q Consensus         6 ~~~~~~~~~h~~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   85 (380)
                      .+.++.+... .++..+++.|+ ++++++...+++|..|+.....       ..+......+.+++|++||+++++...+
T Consensus        18 ~~v~~~~p~~-~~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~g~~-------~~~~~~~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          18 AKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDGNQ-------QIHATVEGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             EEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTCCE-------EEEEECSSEEEEEEECTTSCEEEEEECT
T ss_pred             ccEEEECCCC-CCcCCEEECCC-CCEEEEeCCCCEEEEEeCCCCE-------EEEEcCCCCcceEEEcCCCCeEEEecCC
Confidence            4566677542 26889999998 6899998889988777643221       1223344568999999999999999888


Q ss_pred             CcEEEEECCCCce-eeee--cccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC---------CCcCcEE
Q psy6984          86 KTLRLWDLAAGKT-TRRF--EDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED---------GHSDWVS  153 (380)
Q Consensus        86 ~~i~vwd~~~~~~-~~~~--~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~---------~~~~~v~  153 (380)
                      +.+.+++...... ...+  .........+++.++++.+++.+.++.+..++............         .......
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  168 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  168 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             ceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence            8888888654322 1122  12334578899999999988888888888887655433222211         1112345


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEe--eeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKIN--HSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      .+.+..   ..++++....+.|..++.........  .......+..++++++|+++++...++.|..++..
T Consensus       169 gi~~~~---~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~  237 (302)
T d2p4oa1         169 GLKRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  237 (302)
T ss_dssp             EEEEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             cccccC---CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence            566543   23566777788898888765432211  11122345679999999988888888888888654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=4.7e-07  Score=74.29  Aligned_cols=243  Identities=14%  Similarity=0.217  Sum_probs=144.0

Q ss_pred             CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC----CCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCc
Q psy6984         108 DVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED----GHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNC  183 (380)
Q Consensus       108 ~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~  183 (380)
                      ....++++++++.+++-.....|++||.........-..    +.......+.+.++....+++..+.++.|..++....
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~  103 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ  103 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence            357899999999888877888899998654322222111    1122344556555443323333455667888876543


Q ss_pred             eeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE---ecCceEEEEeecCcccceeeeeeeeecc
Q psy6984         184 KLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV---HNDIITALCFSPNRSFQKIKLDISRTLQ  260 (380)
Q Consensus       184 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~  260 (380)
                      ...............++++++|+++++....+.+.+++.. ++.+..+.   .......+++.+++....      ....
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v------~d~~  176 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI------SDNR  176 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE------EEGG
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEe------eecc
Confidence            3222222344567889999999999888888889888864 55555543   233456666666654321      1123


Q ss_pred             ccceEEEEcCCceeeeee--eccccceeEEEEeecCCEEEEeeC-CCcEEEEecccceeeeEeecccceEEEeeCccccc
Q psy6984         261 KSNLILYPINHGKMETPF--FSLFRDVLSVAFSVDNRQIVSSSR-DKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVS  337 (380)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (380)
                      ...+.+|+.....+ ..+  .+.......+++.++|+.+++-.. ++.|.+++.. +.           .+..+..    
T Consensus       177 ~~~V~~~d~~G~~~-~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~-----------~~~~~~~----  239 (279)
T d1q7fa_         177 AHCVKVFNYEGQYL-RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQ-----------LISALES----  239 (279)
T ss_dssp             GTEEEEEETTCCEE-EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SC-----------EEEEEEE----
T ss_pred             ccceeeeecCCcee-eeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CC-----------EEEEEeC----
Confidence            44566666543322 222  122334678999999998776443 4578888632 11           1111110    


Q ss_pred             ccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEeeeecc
Q psy6984         338 QSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVSVTSR  378 (380)
Q Consensus       338 ~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~~~~~  378 (380)
                         .........++..|||++++ +..++.|++|+....+.
T Consensus       240 ---~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         240 ---KVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             ---SSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             ---CCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence               01112346788999998655 56789999999865544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.04  E-value=1.8e-07  Score=78.24  Aligned_cols=247  Identities=11%  Similarity=0.059  Sum_probs=136.9

Q ss_pred             ceEEEEEccCCCEEEEEeC-------CCcEEEEECCCCceeeeeccc----CCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q psy6984          66 FISDIVLSSDGNYALSGSW-------DKTLRLWDLAAGKTTRRFEDH----TKDVLSVAFSVDNRQIVSSSRDKTIKLWN  134 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~s~~~d~~v~iwd  134 (380)
                      ....++|.++|++.++...       ++.|..||..+++........    ......++|.+++..++++...+.+...+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3567889999997776433       467999998887654433221    22356899999999888887777788887


Q ss_pred             CCCcceEEEeeCCCc---CcEEEEEEccCCCCCEEEEEeC---------------CCeEEEEeCCCceeeEeeeCCccce
Q psy6984         135 TLAHCKFTIVEDGHS---DWVSCVRFSPNHQNPIIVSAGW---------------DRMVKVWNLTNCKLKINHSGHTGYL  196 (380)
Q Consensus       135 ~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~~~---------------d~~v~iwd~~~~~~~~~~~~~~~~i  196 (380)
                      ...............   ...+.+++.+++.  +.++-..               .+.|..++... +... ........
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~-~~~~~~~p  174 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQ-VDTAFQFP  174 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEE-EEEEESSE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEeecC-ceeE-eeCCccee
Confidence            654322211111111   1246788888753  4554321               22344444322 2221 12223345


Q ss_pred             EEEEEcCCCC-----EEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCC
Q psy6984         197 NTVTVSPDGS-----LCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINH  271 (380)
Q Consensus       197 ~~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (380)
                      +.++|+|++.     ++++-+..+.|..||+.....+....       +                         ...+..
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~-------~-------------------------~~~~~~  222 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK-------V-------------------------WGHIPG  222 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE-------E-------------------------EEECCC
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceee-------E-------------------------EEEccc
Confidence            7788888764     44555666777777654322111000       0                         000000


Q ss_pred             ceeeeeeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEE
Q psy6984         272 GKMETPFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLA  351 (380)
Q Consensus       272 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                      .        .....-.+++..+|+.+++....+.|+.|+...+.           ....+..         ......+++
T Consensus       223 ~--------~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~-----------~~~~i~~---------p~~~~t~~a  274 (314)
T d1pjxa_         223 T--------HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ-----------PKMRIRC---------PFEKPSNLH  274 (314)
T ss_dssp             C--------SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS-----------CSEEEEC---------SSSCEEEEE
T ss_pred             c--------ccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE-----------EEEEEEC---------CCCCEEEEE
Confidence            0        00112357888899988877778889888643221           1111110         112346799


Q ss_pred             EecCCCEE-EEEeeCCeEEEEEeeee
Q psy6984         352 WSTDGQTL-FAGYSDNTIRVWQVSVT  376 (380)
Q Consensus       352 ~s~dg~~l-~~g~~dg~v~iw~~~~~  376 (380)
                      |.||++.| ++.+.+|.|...++..+
T Consensus       275 fg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         275 FKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EeCCCCEEEEEECCCCcEEEEECCCC
Confidence            99999865 45567787766666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.02  E-value=1.2e-06  Score=73.27  Aligned_cols=253  Identities=11%  Similarity=0.062  Sum_probs=146.8

Q ss_pred             ceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCcceE
Q psy6984          66 FISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHCKF  141 (380)
Q Consensus        66 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d----~~v~iwd~~~~~~~  141 (380)
                      .+..++|.++|++.++-..++.|+.|+..+++..............+++++||+.+++...+    +.+...+.......
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            35789999999987777788999999988876666655556678899999999987776432    33444444333333


Q ss_pred             EEeeC-CCcCcEEEEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEE-EEEcC
Q psy6984         142 TIVED-GHSDWVSCVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLC-ASGGK  213 (380)
Q Consensus       142 ~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~  213 (380)
                      ..... ......+.+.+.+++.  ++++...      .+.+..++........ ........+.++|+|+++.| ++-+.
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~-~~~~~~~pnGia~s~dg~~lyvad~~  197 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETT  197 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccceeEE-EeeccceeeeeeeccccceEEEeccc
Confidence            33222 1223467788888764  4444321      1235555544333221 12223456889999999855 55567


Q ss_pred             CCcEEEEECCCCc-EEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeeccccceeEEEEee
Q psy6984         214 DMNAMLWDLNDGK-HLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSLFRDVLSVAFSV  292 (380)
Q Consensus       214 d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  292 (380)
                      .++|+.|++.... .......     ..                         ...          .......-.+++.+
T Consensus       198 ~~~I~~~d~~~~g~~~~~~~~-----~~-------------------------~~~----------~~~~~~PdGl~vD~  237 (319)
T d2dg1a1         198 ANRLHRIALEDDGVTIQPFGA-----TI-------------------------PYY----------FTGHEGPDSCCIDS  237 (319)
T ss_dssp             GTEEEEEEECTTSSSEEEEEE-----EE-------------------------EEE----------CCSSSEEEEEEEBT
T ss_pred             CCceEEEEEcCCCceeccccc-----ee-------------------------eec----------cCCccceeeeeEcC
Confidence            7888888865321 1100000     00                         000          00001123578888


Q ss_pred             cCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcccccccCCCCCCceEEEEEecCCCEEEEEee----CCeE
Q psy6984         293 DNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYS----DNTI  368 (380)
Q Consensus       293 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~----dg~v  368 (380)
                      +|++.++...++.|..++. .+..+..+.+..              ....+.....+++|.+++..+++...    .+.-
T Consensus       238 ~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~--------------~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g  302 (319)
T d2dg1a1         238 DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG--------------RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGS  302 (319)
T ss_dssp             TCCEEEEEETTTEEEEECT-TSCEEEEEECTT--------------GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCE
T ss_pred             CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC--------------cCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCce
Confidence            9998888888899999974 222222221111              11122334568899998887765443    3344


Q ss_pred             EEEEeeee
Q psy6984         369 RVWQVSVT  376 (380)
Q Consensus       369 ~iw~~~~~  376 (380)
                      .+|.+...
T Consensus       303 ~l~~~~~~  310 (319)
T d2dg1a1         303 MLYTVNGF  310 (319)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEeCC
Confidence            56666543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.7e-07  Score=75.14  Aligned_cols=219  Identities=11%  Similarity=0.075  Sum_probs=125.1

Q ss_pred             cccceEEEEeCCCCCCeEE-EeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-Cc--EEE
Q psy6984          15 HNGWVTQIATNPKFPDTIL-SCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-KT--LRL   90 (380)
Q Consensus        15 h~~~v~~i~~~~~~~~~l~-t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~--i~v   90 (380)
                      +.+.+.+-+|+|+ ++.|| +....+...+|.......    ....+..+........|+|+|+.++..... +.  +..
T Consensus        37 ~~~~~~sP~wSPD-Gk~IAf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          37 SPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANG----AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             ESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTC----CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CCCceeeeEECCC-CCEEEEEEeeccCcceeeeecccC----ceeEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence            4556778899998 55655 444444444444332211    122345566677889999999998876543 32  333


Q ss_pred             EECCCCceeeeecccCCCeEEEEEeCCCCEEEE-EeCCCcEEEEe--CCCcceEEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984          91 WDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-SSRDKTIKLWN--TLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        91 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~~~d~~v~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      +......... ............+++++..++. ...++...+|.  .........  ...........++|++.. ++.
T Consensus       112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~-~~~  187 (269)
T d2hqsa1         112 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI--TWEGSQNQDADVSSDGKF-MVM  187 (269)
T ss_dssp             EETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC--CCSSSEEEEEEECTTSSE-EEE
T ss_pred             ccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceee--ecccccccccccccccce-eEE
Confidence            3333322222 2334444555667777776554 44556555553  333322211  233445667789998764 344


Q ss_pred             EEeCCCeEEEE--eCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcC---CCcEEEEECCCCcEEEEEEecCceEEEEe
Q psy6984         168 SAGWDRMVKVW--NLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGK---DMNAMLWDLNDGKHLHTLVHNDIITALCF  242 (380)
Q Consensus       168 s~~~d~~v~iw--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~i~~~~~  242 (380)
                      .....+...+|  +......  ....+........|+|||+.|+..+.   ...|+++++..+...........+...+|
T Consensus       188 ~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~W  265 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW  265 (269)
T ss_dssp             EEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEE
T ss_pred             EeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEe
Confidence            44444444444  4444333  23334455677889999998875443   45788999987766554455566777888


Q ss_pred             ec
Q psy6984         243 SP  244 (380)
Q Consensus       243 ~~  244 (380)
                      +|
T Consensus       266 SP  267 (269)
T d2hqsa1         266 SP  267 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=1.5e-06  Score=72.36  Aligned_cols=203  Identities=9%  Similarity=0.078  Sum_probs=117.0

Q ss_pred             eEEEEeCCCCCCeEEEeeC-------CCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEE
Q psy6984          19 VTQIATNPKFPDTILSCSR-------DNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLW   91 (380)
Q Consensus        19 v~~i~~~~~~~~~l~t~~~-------dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   91 (380)
                      .-.+++.|+ ++++++...       +|.|..|+......... .......-...-..+.|.++++.++++.....|...
T Consensus        20 ~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~-~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          20 AEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             CEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEE-ECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            344678887 566665332       46677777654321110 000011111235679999999988888877789999


Q ss_pred             ECCCCceeeeecccC----CCeEEEEEeCCCCEEEEEeC---------------CCcEEEEeCCCcceEEEeeCCCcCcE
Q psy6984          92 DLAAGKTTRRFEDHT----KDVLSVAFSVDNRQIVSSSR---------------DKTIKLWNTLAHCKFTIVEDGHSDWV  152 (380)
Q Consensus        92 d~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~s~~~---------------d~~v~iwd~~~~~~~~~~~~~~~~~v  152 (380)
                      +...+..........    ....++++.++|...++-..               .+.+..++.... .....  ......
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~--~~~~~p  174 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVD--TAFQFP  174 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEE--EEESSE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-eeEee--CCccee
Confidence            976553322111111    13567999999998877532               223333332221 11111  112234


Q ss_pred             EEEEEccCCCC---CEEEEEeCCCeEEEEeCCCceee------EeeeC-CccceEEEEEcCCCCEEEEEcCCCcEEEEEC
Q psy6984         153 SCVRFSPNHQN---PIIVSAGWDRMVKVWNLTNCKLK------INHSG-HTGYLNTVTVSPDGSLCASGGKDMNAMLWDL  222 (380)
Q Consensus       153 ~~~~~~~~~~~---~~l~s~~~d~~v~iwd~~~~~~~------~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~  222 (380)
                      +.++|+|++..   .++++-+..+.|..||+......      ....+ +......++++++|++.++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            67888886532   24455567788988887543211      11111 2334678999999998888777889999987


Q ss_pred             CCCc
Q psy6984         223 NDGK  226 (380)
Q Consensus       223 ~~~~  226 (380)
                      +.++
T Consensus       255 ~~g~  258 (314)
T d1pjxa_         255 DGGQ  258 (314)
T ss_dssp             TCBS
T ss_pred             CCCE
Confidence            6554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.3e-06  Score=73.56  Aligned_cols=221  Identities=13%  Similarity=0.123  Sum_probs=124.6

Q ss_pred             EEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe---------CCCcEEEEE
Q psy6984          22 IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS---------WDKTLRLWD   92 (380)
Q Consensus        22 i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---------~d~~i~vwd   92 (380)
                      ..|.++ ++++. -..+|.+.+|+........-+....+  ..-.+....+|||+++++...         ..+.+.+||
T Consensus        22 ~~W~~~-~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          22 AKWISD-TEFIY-REQKGTVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CCBSSS-SCBCC-CCSSSCEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             CEEeCC-CcEEE-EeCCCcEEEEECCCCCEEEEEcCccc--cccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            457665 44544 45578999999875433211111112  223466788999999988763         357899999


Q ss_pred             CCCCceeeeec--ccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcE-----------------E
Q psy6984          93 LAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWV-----------------S  153 (380)
Q Consensus        93 ~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-----------------~  153 (380)
                      +.+++......  .....+....|||||+.+|-.. ++.+.+.+...+........+....+                 .
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccc
Confidence            99876544322  2234455678999999988765 45577776655444444433322212                 3


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEE---------------------------------eCCCceeeEee------eCCcc
Q psy6984         154 CVRFSPNHQNPIIVSAGWDRMVKVW---------------------------------NLTNCKLKINH------SGHTG  194 (380)
Q Consensus       154 ~~~~~~~~~~~~l~s~~~d~~v~iw---------------------------------d~~~~~~~~~~------~~~~~  194 (380)
                      .+.|+|+++. +++.--.+..|..+                                 |+.+.......      .....
T Consensus       177 a~~WSPDgk~-iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         177 AHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             EEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             eEEECCCCCe-EEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            5678998764 22222233333333                                 33222111100      01122


Q ss_pred             ceEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEEEEE--ecCc----eEEEEeecCccc
Q psy6984         195 YLNTVTVSPDGSLCASGGK----DMNAMLWDLNDGKHLHTLV--HNDI----ITALCFSPNRSF  248 (380)
Q Consensus       195 ~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~--~~~~----i~~~~~~~~~~~  248 (380)
                      .+..+.|+|++++++....    ...+.++|..+++......  .+..    .....|++++..
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCe
Confidence            4677889999886655322    2367788998887654432  1211    233456777653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=5.2e-07  Score=73.13  Aligned_cols=225  Identities=8%  Similarity=0.012  Sum_probs=139.5

Q ss_pred             EecCccc--ceEEEEeCCCCCCeEEE-eeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCc
Q psy6984          11 TLNGHNG--WVTQIATNPKFPDTILS-CSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKT   87 (380)
Q Consensus        11 ~~~~h~~--~v~~i~~~~~~~~~l~t-~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   87 (380)
                      .+.|+..  .-..|++.++ ++++++ .+..+.+..++.......    .....+ ......++++++++.+++....+.
T Consensus         6 ~~~~~~~~~~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~----~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~   79 (260)
T d1rwia_           6 PFTGIDFRLSPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTT----VLPFNG-LYQPQGLAVDGAGTVYVTDFNNRV   79 (260)
T ss_dssp             CCCSCCSCCCEEEEEECTT-CCEEEEECSSSCEEEEEC----CEE----ECCCCS-CCSCCCEEECTTCCEEEEETTTEE
T ss_pred             ecccCCCcCCCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEE----EeccCC-ccCceEEEEcCCCCEEEeeeeece
Confidence            4445543  3478999887 565554 455677777765432111    111111 123467889999998877777777


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEE
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIV  167 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  167 (380)
                      +++++..+......... .....+++++++++.+++-..+..+..++......... ..........+++.+++.  +++
T Consensus        80 i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~~~~g~--~~v  155 (260)
T d1rwia_          80 VTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-PFTGLNDPDGVAVDNSGN--VYV  155 (260)
T ss_dssp             EEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC-CCCSCCSCCEEEECTTCC--EEE
T ss_pred             eeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeee-eecccCCcceeeecCCCC--Eee
Confidence            77666554444433222 34578999999999888777777777777544332222 112223456788888653  677


Q ss_pred             EEeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEE--ecCceEEEEeecC
Q psy6984         168 SAGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLV--HNDIITALCFSPN  245 (380)
Q Consensus       168 s~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~~~~~~~  245 (380)
                      +...++.|..+|...................++++++|+++++-...+.|..++...... ..+.  .-.....++++++
T Consensus       156 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         156 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTT
T ss_pred             eccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCC
Confidence            777788899999876544433334456678999999999999888889998887654432 2221  1134566777665


Q ss_pred             c
Q psy6984         246 R  246 (380)
Q Consensus       246 ~  246 (380)
                      +
T Consensus       235 g  235 (260)
T d1rwia_         235 R  235 (260)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=5.1e-05  Score=62.99  Aligned_cols=220  Identities=9%  Similarity=0.022  Sum_probs=135.9

Q ss_pred             cceEEEEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC----CcEEEEE
Q psy6984          17 GWVTQIATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD----KTLRLWD   92 (380)
Q Consensus        17 ~~v~~i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd   92 (380)
                      -.+..++|.++ ++++++-...+.|..|+......     .............+++++||+++++...+    +.|...+
T Consensus        40 ~~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~-----~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          40 LQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEI-----KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCE-----EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             cCcEeCEECCC-CCEEEEECCCCEEEEEECCCCeE-----EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            34567889887 67777776788888887543221     11122233456789999999988776432    3455556


Q ss_pred             CCCCceeeeeccc--CCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCC
Q psy6984          93 LAAGKTTRRFEDH--TKDVLSVAFSVDNRQIVSSSRD------KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNP  164 (380)
Q Consensus        93 ~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  164 (380)
                      ...+.........  ......+++.++|++.++....      +.+..++...+.......  .-...+.++|+|+++. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--~~~~pnGia~s~dg~~-  190 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKV-  190 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSE-
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee--ccceeeeeeeccccce-
Confidence            5555444333221  2346789999999877765332      224444433222211111  1223567999998653 


Q ss_pred             EEEEEeCCCeEEEEeCCCce-ee-------EeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC-
Q psy6984         165 IIVSAGWDRMVKVWNLTNCK-LK-------INHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND-  235 (380)
Q Consensus       165 ~l~s~~~d~~v~iwd~~~~~-~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-  235 (380)
                      ++++-+..+.|..|++.... ..       ............++++++|++.++....+.|.+||. .++.+..+..+. 
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            45666778899999876421 11       011112234678999999999888888999999995 688887776443 


Q ss_pred             ------ceEEEEeecCc
Q psy6984         236 ------IITALCFSPNR  246 (380)
Q Consensus       236 ------~i~~~~~~~~~  246 (380)
                            .+.+++|.+..
T Consensus       270 ~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             GGTCSCBCCEEEECTTS
T ss_pred             CCCcCceeeeEEEeCCC
Confidence                  35677777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.41  E-value=0.00018  Score=57.96  Aligned_cols=230  Identities=14%  Similarity=0.162  Sum_probs=112.8

Q ss_pred             EEccC--CCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEe-CCC-----cEEEEeCCCcceEE
Q psy6984          71 VLSSD--GNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS-RDK-----TIKLWNTLAHCKFT  142 (380)
Q Consensus        71 ~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~-~d~-----~v~iwd~~~~~~~~  142 (380)
                      ..+||  |++++-.+ ++.|.+.|+.+++.. .+..+.+.+...+|||||+.||-.. .++     .+.+++...+....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  99887665 467999999988765 4556677788999999999988543 222     24555554443332


Q ss_pred             EeeC-----CCcCcEEEEEEccCCCCCEEEEEeC-----CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEc
Q psy6984         143 IVED-----GHSDWVSCVRFSPNHQNPIIVSAGW-----DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGG  212 (380)
Q Consensus       143 ~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  212 (380)
                      +...     ..........|+|+++. ++++...     ...+...+.........   +........+.+.+..++...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  158 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNL-IISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNT  158 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCE-EEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESC
T ss_pred             eeecCCCccCccccccccccCCCCCE-EEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeec
Confidence            2111     11123456788888753 2222111     12244445444333221   122222233333333443332


Q ss_pred             CCC-----------cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCceeeeeeecc
Q psy6984         213 KDM-----------NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKMETPFFSL  281 (380)
Q Consensus       213 ~d~-----------~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (380)
                      .+.           ..........................++++..+     ..........++++++..++... +...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~d~~g~~~~~-lt~~  232 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIY-----FITDIDGFGQIYSTDLDGKDLRK-HTSF  232 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEE-----EEECTTSSCEEEEEETTSCSCEE-CCCC
T ss_pred             cccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccc-----eecccccccceEEEeCCCCceEE-eecC
Confidence            221           111111111111111112222223333333111     11112234456777776554432 2111


Q ss_pred             ccceeEEEEeecCCEEEEeeCCCcEEEEecccc
Q psy6984         282 FRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAH  314 (380)
Q Consensus       282 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  314 (380)
                       .......|+|||+.|+.. .++.|+++|+..+
T Consensus       233 -~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g  263 (281)
T d1k32a2         233 -TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTE  263 (281)
T ss_dssp             -CSSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred             -CCcccccCcCCCCEEEEE-eCCEEEEEECCCC
Confidence             222334689999998864 4678888876443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=0.00015  Score=63.49  Aligned_cols=103  Identities=8%  Similarity=0.056  Sum_probs=64.2

Q ss_pred             ceEEEEeCCCCCCeEEEee---------CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcE
Q psy6984          18 WVTQIATNPKFPDTILSCS---------RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTL   88 (380)
Q Consensus        18 ~v~~i~~~~~~~~~l~t~~---------~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   88 (380)
                      .+....++|+ +++++-..         ..+...++|+......   +..........+....|||||++||-.. ++.|
T Consensus        62 ~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~---~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl  136 (465)
T d1xfda1          62 RAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNI  136 (465)
T ss_dssp             TCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEE
T ss_pred             ccceeEECCC-CCeEEEEEcccceeEeeccccEEEEEccCCcee---eccCccCCccccceeeeccCCceEEEEe-cceE
Confidence            5667778888 45655443         3456677777643211   1111222333455688999999988766 5789


Q ss_pred             EEEECCCCceeeeecc-cCC-----------------CeEEEEEeCCCCEEEEEe
Q psy6984          89 RLWDLAAGKTTRRFED-HTK-----------------DVLSVAFSVDNRQIVSSS  125 (380)
Q Consensus        89 ~vwd~~~~~~~~~~~~-h~~-----------------~v~~~~~~~~~~~~~s~~  125 (380)
                      ++.+..++...+.... ...                 .-..+.|||||+.||...
T Consensus       137 ~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         137 YYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             EEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            9998877665544321 111                 124678999999998765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.32  E-value=0.00049  Score=56.11  Aligned_cols=209  Identities=14%  Similarity=0.079  Sum_probs=130.9

Q ss_pred             EEeCCCCCCeEEEeeCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCCCcEEEEECCCCceeee
Q psy6984          22 IATNPKFPDTILSCSRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWDKTLRLWDLAAGKTTRR  101 (380)
Q Consensus        22 i~~~~~~~~~l~t~~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~  101 (380)
                      -.|++..+.++++=-..+.|..|+.......       .......+.++++.++|+++++ +.+ .|.++|..+++....
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-------~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKT-------VHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------EEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEE
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEE-------EEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEE
Confidence            4466654444444335677888876543211       1112235778889888876665 444 589999998876543


Q ss_pred             ecc--c--CCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC
Q psy6984         102 FED--H--TKDVLSVAFSVDNRQIVSSSRD----KTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR  173 (380)
Q Consensus       102 ~~~--h--~~~v~~~~~~~~~~~~~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~  173 (380)
                      ...  .  ...+.++.+.|+|+..++....    +.-.+|....+.......  .-...+.+++++++.. ++++-+..+
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~-l~~~dt~~~  170 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTT-GYFVDTKVN  170 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCE-EEEEETTTC
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCce-EEEeecccc
Confidence            321  1  1247789999999977765422    233455443332222221  1223567899887643 566777788


Q ss_pred             eEEEEeCCCc------e--eeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEec-CceEEEEee
Q psy6984         174 MVKVWNLTNC------K--LKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHN-DIITALCFS  243 (380)
Q Consensus       174 ~v~iwd~~~~------~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~~  243 (380)
                      .|..+++...      +  ......+..+....++++.+|++.++.-..+.|..||. .++.+..+..+ ..+++++|.
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence            8998887421      1  11222334556888999999998887777889999995 67888877665 457888885

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.02  E-value=0.0011  Score=53.08  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             EEeCC--CCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC-----CeEEEEeCCCcee
Q psy6984         113 AFSVD--NRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD-----RMVKVWNLTNCKL  185 (380)
Q Consensus       113 ~~~~~--~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~  185 (380)
                      ..+||  |+.++-.+. +.|.+.|+.++....+.  .+.......+|+|+++. +.++...+     ..|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt--~~~~~~~~p~~SPDG~~-iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIV--SNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEEEEE--CSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEEEEe--cCCCcccCEEECCCCCE-EEEEEeeCCCCCceEEEEEEecCCce
Confidence            35788  998886654 45666687766554332  23455788999999875 33333222     2467777776654


Q ss_pred             eEee------eCCccceEEEEEcCCCCEEEEEcC------CCcEEEEECCCCc
Q psy6984         186 KINH------SGHTGYLNTVTVSPDGSLCASGGK------DMNAMLWDLNDGK  226 (380)
Q Consensus       186 ~~~~------~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~  226 (380)
                      ....      ...........|+|+|+.++....      ...+...+...+.
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            3221      112234567889999998886533      2234455554443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.01  E-value=0.0023  Score=51.92  Aligned_cols=219  Identities=10%  Similarity=0.065  Sum_probs=123.5

Q ss_pred             EEEeCCCC-EEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCceeeEeee
Q psy6984         112 VAFSVDNR-QIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKLKINHS  190 (380)
Q Consensus       112 ~~~~~~~~-~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  190 (380)
                      ..|++... +..+--..+.|..||..++......   ....+.++++.+++.   |+.++. ..+..+|..+++......
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~---l~va~~-~gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSK---QLIASD-DGLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTE---EEEEET-TEEEEEETTTCCEEEEEC
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCC---EEEEEe-CccEEeecccceeeEEee
Confidence            45665433 3344445677777876655433222   123577888877642   444444 468889998877544322


Q ss_pred             C----CccceEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeeeeeeecccc
Q psy6984         191 G----HTGYLNTVTVSPDGSLCASGGK----DMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLDISRTLQKS  262 (380)
Q Consensus       191 ~----~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  262 (380)
                      .    ....++.+.++|+|++.++...    .+.-.+|.+..++.......-...+.++|++++.....     ......
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~-----~dt~~~  170 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYF-----VDTKVN  170 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEE-----EETTTC
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEE-----eecccc
Confidence            1    1235788999999997766532    23445666666665444444445678888888753221     122345


Q ss_pred             ceEEEEcCCce--ee---e---eeeccccceeEEEEeecCCEEEEeeCCCcEEEEecccceeeeEeecccceEEEeeCcc
Q psy6984         263 NLILYPINHGK--ME---T---PFFSLFRDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVDLETKKMVEELRPD  334 (380)
Q Consensus       263 ~~~~~~~~~~~--~~---~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  334 (380)
                      .++.++++...  ..   .   .........-.+++..+|++.++.-..+.|..|+. .+..+..+.+.           
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP-----------  238 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP-----------  238 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS-----------
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC-----------
Confidence            56666553211  10   0   11112234567888888888777666778888863 22222222111           


Q ss_pred             cccccCCCCCCceEEEEEe-cCCCEEEEEe
Q psy6984         335 VVSQSTKADPPMCLSLAWS-TDGQTLFAGY  363 (380)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~s-~dg~~l~~g~  363 (380)
                               ...+++++|- +|.+.|+..+
T Consensus       239 ---------~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         239 ---------GKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             ---------CSBEEEEEEESTTSCEEEEEE
T ss_pred             ---------CCceEEEEEeCCCCCEEEEEE
Confidence                     1235688896 6877776433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.91  E-value=0.0046  Score=52.03  Aligned_cols=157  Identities=11%  Similarity=0.129  Sum_probs=88.7

Q ss_pred             EEEEccCCCEEEEEeCCC-----------cEEEEECCCCceeee--e-cccCCCeEEEEEeCCCCEEEEEeCC-CcEEEE
Q psy6984          69 DIVLSSDGNYALSGSWDK-----------TLRLWDLAAGKTTRR--F-EDHTKDVLSVAFSVDNRQIVSSSRD-KTIKLW  133 (380)
Q Consensus        69 ~~~~~~~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~--~-~~h~~~v~~~~~~~~~~~~~s~~~d-~~v~iw  133 (380)
                      ......+|+.++.|+.+.           .+.+||..+++-...  . ..|.......++.+++..++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            344456788888777531           367999988754322  1 2232333456788999999888755 589999


Q ss_pred             eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCC------CeEEEEeCCCceeeEeee---------CCcc----
Q psy6984         134 NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWD------RMVKVWNLTNCKLKINHS---------GHTG----  194 (380)
Q Consensus       134 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~---------~~~~----  194 (380)
                      |..+..-...-......+-.+.+..+++.  +++.++.+      ..+.+||..+.+-.....         .+..    
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~  181 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  181 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             cCccCcccccccccccccccceeeecCCc--eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeec
Confidence            97654332211111122233455555543  56665532      358899987754321100         0000    


Q ss_pred             -ceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Q psy6984         195 -YLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKH  227 (380)
Q Consensus       195 -~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  227 (380)
                       .-..+...++|+.+..++.++.+.+++..+...
T Consensus       182 ~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             cceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence             011123345677777777777777777766643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.79  E-value=0.00078  Score=56.52  Aligned_cols=238  Identities=11%  Similarity=0.092  Sum_probs=123.9

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC------------------eEE
Q psy6984         116 VDNRQIVSSS-RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR------------------MVK  176 (380)
Q Consensus       116 ~~~~~~~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~------------------~v~  176 (380)
                      +||++++... .+.+|-+-|+...+...++.......+..++..+.++..+++..+.+.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            3788776654 677888888877666555555666677888887776667777665532                  356


Q ss_pred             EEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCC--cEEEEECCCCcEEEEEEecCceEEEEeecCcccceeeee
Q psy6984         177 VWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDM--NAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKIKLD  254 (380)
Q Consensus       177 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  254 (380)
                      .+|..+.+......- .+....++++++|+++++.+.+.  .+.+.++...+.-.....+-+ ....+.+++.+..    
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~-rie~av~~Gk~~e----  250 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA-EIEKAIAAGDYQE----  250 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH-HHHHHHHHTCSEE----
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH-HhHHhhhcCCcEE----
Confidence            788887776554432 23456788999999988877542  222222222221111100000 0000011111110    


Q ss_pred             eeeeccccceEEEEcCCc--eeeeeeeccccceeEEEEeecCCEEEEee-CCCcEEEEecccceeeeEeecccceEEEee
Q psy6984         255 ISRTLQKSNLILYPINHG--KMETPFFSLFRDVLSVAFSVDNRQIVSSS-RDKTIKLWNTLAHCKFTIVDLETKKMVEEL  331 (380)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  331 (380)
                            -+.+.+.+....  .....+.........+.++|||++++.++ .+.+|.+.|+.+=...  ++  ..     .
T Consensus       251 ------ingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~--~~--~~-----~  315 (459)
T d1fwxa2         251 ------LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV--FY--EN-----A  315 (459)
T ss_dssp             ------ETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH--HH--SC-----C
T ss_pred             ------eCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhh--hc--cc-----C
Confidence                  122223332221  11111223334456789999999977665 4889999986421100  00  00     0


Q ss_pred             CcccccccCCCCCCceEEEEEecCCCEEEEEeeCCeEEEEEee
Q psy6984         332 RPDVVSQSTKADPPMCLSLAWSTDGQTLFAGYSDNTIRVWQVS  374 (380)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~g~~dg~v~iw~~~  374 (380)
                      .+.........-...-+.-+|..+|.-..+-.-|..|.-|++.
T Consensus       316 ~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         316 DPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             -GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            0000000001111122456787777544444479999999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.057  Score=42.47  Aligned_cols=208  Identities=10%  Similarity=0.010  Sum_probs=125.2

Q ss_pred             CcccceEEEEeCCCCCCeEEEe-eCCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCcEEEE
Q psy6984          14 GHNGWVTQIATNPKFPDTILSC-SRDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKTLRLW   91 (380)
Q Consensus        14 ~h~~~v~~i~~~~~~~~~l~t~-~~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vw   91 (380)
                      .+...+..|++++. .+.++.+ ..++.|+..+++.....     .........+..+++..-++.|... ...+.|.+.
T Consensus        33 ~~~~~~~~ld~D~~-~~~iywsd~~~~~I~~~~l~g~~~~-----~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          33 IPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPT-----TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEEETT-TTEEEEEETTTTEEEEEESSSCCCE-----EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCCCcEEEEEEEeC-CCEEEEEECCCCeEEEEEcccCCcE-----EEEEeccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence            33455777888877 4555554 45677877776543211     1112222357889998766666544 556799999


Q ss_pred             ECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC-CcEEEE--eCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEE
Q psy6984          92 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD-KTIKLW--NTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVS  168 (380)
Q Consensus        92 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d-~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  168 (380)
                      ++........+......+..++++|...++.-.... +..+|+  ++.......... ..-.....+++.+..+. ++.+
T Consensus       107 ~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~~~~~-lYw~  184 (263)
T d1npea_         107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFSSQ-LCWV  184 (263)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTTTE-EEEE
T ss_pred             ecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEeecCcE-EEEE
Confidence            987654433333334668899999977776644332 333444  444433333332 22345678888875442 4455


Q ss_pred             EeCCCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         169 AGWDRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       169 ~~~d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      -...+.|...++..........+- .....+++. ++.++.+-...+.|...|..+++.+..+
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            556788999998765544434432 235677776 4555566667788888888888766544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.093  Score=41.20  Aligned_cols=186  Identities=11%  Similarity=0.023  Sum_probs=110.5

Q ss_pred             CeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCCceeeeecccCCCeEEEEEeCC
Q psy6984          39 NTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVD  117 (380)
Q Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~  117 (380)
                      +.|+--.++............+..+...+..++|.+..+.|.-.. .++.|+..++..+.....+......+.++++..-
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~   89 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEecc
Confidence            466666664332211111112333444577888988777777654 4577888888766555444444456889999876


Q ss_pred             CCEEE-EEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCC--eEEEEeCCCceeeEeeeCCcc
Q psy6984         118 NRQIV-SSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDR--MVKVWNLTNCKLKINHSGHTG  194 (380)
Q Consensus       118 ~~~~~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~  194 (380)
                      +..+. +-...+.|.+.++.......... ........+++.|.... ++.+-...+  .|.--++..............
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~p~~l~vdp~~g~-ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~  167 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDGTNRRILAQDNLG  167 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEec-ccccCCcEEEEecccCc-EEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence            66665 55566789888876654433332 23345788999986542 333432222  344445554433333333345


Q ss_pred             ceEEEEEcCCCCEE-EEEcCCCcEEEEECCCCc
Q psy6984         195 YLNTVTVSPDGSLC-ASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       195 ~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~  226 (380)
                      .+..+++++.++.| .+-...+.|...|+....
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            67899999876655 554667888888886543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.26  Score=38.89  Aligned_cols=129  Identities=6%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecCceEEEEeecCccccee
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHNDIITALCFSPNRSFQKI  251 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  251 (380)
                      ...|.+.|+.+.......+-   ...+..++|..+.+|.-+ ...+.+||+++.+.++....++.+.-..|-.+..... 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l-  118 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL-  118 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEE-
T ss_pred             CceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEE-
Confidence            35788889876543322221   223456799999888776 5589999999999999999999888888866543322 


Q ss_pred             eeeeeeeccccceEEEEcCCceeeeeeeccc-----cceeEEEEeecCCEEEEee---C----CCcEEEEecc
Q psy6984         252 KLDISRTLQKSNLILYPINHGKMETPFFSLF-----RDVLSVAFSVDNRQIVSSS---R----DKTIKLWNTL  312 (380)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~---~----dg~v~iw~~~  312 (380)
                             .....++-|++.........+..+     ..|.....++++++++-.|   .    .|.+++|...
T Consensus       119 -------VT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e  184 (327)
T d1utca2         119 -------VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  184 (327)
T ss_dssp             -------ECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             -------EcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence                   234567778774432222222222     3466777788888876432   2    3567788754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.33  Score=37.91  Aligned_cols=210  Identities=8%  Similarity=-0.020  Sum_probs=120.6

Q ss_pred             ccceEEEEeCCCCCCeEEEee-CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEE-eCCCcEEEEEC
Q psy6984          16 NGWVTQIATNPKFPDTILSCS-RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSG-SWDKTLRLWDL   93 (380)
Q Consensus        16 ~~~v~~i~~~~~~~~~l~t~~-~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~   93 (380)
                      ...+..|++++. .+.+.... .++.|+.-++....... ............+..+++.+-++.|... ...+.|.+.++
T Consensus        29 ~~~~~~id~d~~-~~~lYw~D~~~~~I~~~~l~~~~~~~-~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          29 LRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSSEEEEEEETT-TTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEeC-CCEEEEEECCCCEEEEEEecCCCCCc-ceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            345667888876 45555553 45666665554321111 1111122222346678888766666555 45578999999


Q ss_pred             CCCceeeeecccCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeC
Q psy6984          94 AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSS--RDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGW  171 (380)
Q Consensus        94 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  171 (380)
                      ........+.........++++|...++.-..  ..+.|.-.++.......... ..-.....+++.+.... ++.+-..
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~-~~~~~p~gl~iD~~~~~-lYw~d~~  184 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLLSGR-LYWVDSK  184 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETTTTE-EEEEETT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-cccceeeEEEeeccccE-EEEecCC
Confidence            87665555555556788999998666655443  23445555555444433333 22345678888876543 4455566


Q ss_pred             CCeEEEEeCCCceeeEeeeC--CccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Q psy6984         172 DRMVKVWNLTNCKLKINHSG--HTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHT  230 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  230 (380)
                      .+.|...++...........  .......+++. ++.++.+-..++.|...+..+++....
T Consensus       185 ~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEE
Confidence            78899889876443332222  22345677776 345555556777888777777654433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.99  E-value=1  Score=39.42  Aligned_cols=153  Identities=8%  Similarity=0.004  Sum_probs=85.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeccc---C-CCeEEEEEeCCCCEEEEEe------CCCcEEEEeCCCcceEEEee
Q psy6984          76 GNYALSGSWDKTLRLWDLAAGKTTRRFEDH---T-KDVLSVAFSVDNRQIVSSS------RDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h---~-~~v~~~~~~~~~~~~~s~~------~d~~v~iwd~~~~~~~~~~~  145 (380)
                      +..++.++.|+.+.-.|.++++........   . ..++.--.-.++ .++.+.      .+|.|.-+|..++..+....
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            457888899999999999999887654321   1 111111111233 344444      36789999988776655432


Q ss_pred             CCC------------------------------------cCcEE-EEEEccCCCCCEEEEEeC----------------C
Q psy6984         146 DGH------------------------------------SDWVS-CVRFSPNHQNPIIVSAGW----------------D  172 (380)
Q Consensus       146 ~~~------------------------------------~~~v~-~~~~~~~~~~~~l~s~~~----------------d  172 (380)
                      ...                                    ...++ ...+.+...  +++.+..                .
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g--~~y~~tg~~~p~~~~~r~g~n~~s  271 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN--LFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT--EEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcC--eeeeecccccCccccccccccccc
Confidence            110                                    00011 123333322  2222211                2


Q ss_pred             CeEEEEeCCCceeeEeeeCCc---------cceEEEEEcCCCC---EEEEEcCCCcEEEEECCCCcEEEEE
Q psy6984         173 RMVKVWNLTNCKLKINHSGHT---------GYLNTVTVSPDGS---LCASGGKDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       173 ~~v~iwd~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~  231 (380)
                      ..+.-.|.+++++...++...         .......+..+++   .++.++.+|.++++|..+++.+...
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeee
Confidence            456677888888776554321         1112222233444   5678899999999999999987554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.66  E-value=1.1  Score=39.26  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=42.1

Q ss_pred             CeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC
Q psy6984         173 RMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND  235 (380)
Q Consensus       173 ~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  235 (380)
                      |.+.-||+.+++.....+.. .....-.+.-.+.+++.|+.|+.++.+|.++|+.+..+....
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~  499 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS  499 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence            46777888888776554321 111111223346688889999999999999999998876543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.42  E-value=1.5  Score=38.61  Aligned_cols=110  Identities=9%  Similarity=0.054  Sum_probs=60.1

Q ss_pred             CCEEEEEeCCCcEEEEEC-CCCceeeeecccCC-----------CeEEEEEeCC----CCEEEEEeCCCcEEEEeCCCcc
Q psy6984          76 GNYALSGSWDKTLRLWDL-AAGKTTRRFEDHTK-----------DVLSVAFSVD----NRQIVSSSRDKTIKLWNTLAHC  139 (380)
Q Consensus        76 ~~~l~s~~~d~~i~vwd~-~~~~~~~~~~~h~~-----------~v~~~~~~~~----~~~~~s~~~d~~v~iwd~~~~~  139 (380)
                      |...++.+.++.+...|. ++|+.+-++.....           .-+.+++.++    ..+++.++.|+.+.-.|..++.
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~  142 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence            433344455567777776 46777766531100           1133455432    3468888899988888877766


Q ss_pred             eEEEeeCCCcC---cEE-EEEEccCCCCCEEEEEeC------CCeEEEEeCCCceeeEee
Q psy6984         140 KFTIVEDGHSD---WVS-CVRFSPNHQNPIIVSAGW------DRMVKVWNLTNCKLKINH  189 (380)
Q Consensus       140 ~~~~~~~~~~~---~v~-~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~  189 (380)
                      ...........   .+. ...+.    ...++.+..      .|.|+-+|++++++...+
T Consensus       143 ~~w~~~~~d~~~~~~~t~~P~v~----~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLTIAPYVV----KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEE----TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eeccccccccccccccccCCcEE----CCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            65443322110   011 01111    113444432      488999999998877653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.02  E-value=1.2  Score=36.07  Aligned_cols=145  Identities=13%  Similarity=0.149  Sum_probs=83.9

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCceeeeecccCCCeEEEEEe----CCC--CEEEEEe-CC---CcEEEEeCCCc-ceEE
Q psy6984          74 SDGNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS----VDN--RQIVSSS-RD---KTIKLWNTLAH-CKFT  142 (380)
Q Consensus        74 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~--~~~~s~~-~d---~~v~iwd~~~~-~~~~  142 (380)
                      |+..+++....++-|++||+. |+.++.+..  +.+..+..-    ..+  ..++.++ ++   .+|.+|..... ..+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            456788888888889999985 777766542  344443322    122  2344444 22   35777765322 2222


Q ss_pred             EeeCC------CcCcEEEEEE--ccCCCCCEEEEEeCCCeEEEEeCC---Cc----eeeEeeeCCccceEEEEEcCCCCE
Q psy6984         143 IVEDG------HSDWVSCVRF--SPNHQNPIIVSAGWDRMVKVWNLT---NC----KLKINHSGHTGYLNTVTVSPDGSL  207 (380)
Q Consensus       143 ~~~~~------~~~~v~~~~~--~~~~~~~~l~s~~~d~~v~iwd~~---~~----~~~~~~~~~~~~i~~~~~~~~~~~  207 (380)
                      .+...      ....+..+++  ++.....+++....+|.+..|.+.   +.    ++...+. -...+..+.+++....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            22111      0112455666  554444456777888999888763   22    1222222 2346888999998888


Q ss_pred             EEEEcCCCcEEEEEC
Q psy6984         208 CASGGKDMNAMLWDL  222 (380)
Q Consensus       208 l~~~~~d~~i~i~d~  222 (380)
                      |..+-.+..++.++.
T Consensus       194 LyisEE~~Giw~~~a  208 (353)
T d1h6la_         194 LYIAEEDEAIWKFSA  208 (353)
T ss_dssp             EEEEETTTEEEEEES
T ss_pred             EEEecCccceEEEEe
Confidence            888888776666654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.99  E-value=2.6  Score=36.67  Aligned_cols=111  Identities=12%  Similarity=0.064  Sum_probs=59.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeecccCC----------Ce-EEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee
Q psy6984          77 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTK----------DV-LSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE  145 (380)
Q Consensus        77 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~  145 (380)
                      ..|+.++.++.|.-.|.++|+.+-++.....          .+ ..++.  .+..++.+..|+.+.-.|..++.......
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            4667777888999999999988877532110          00 11111  24467778888888877776665544332


Q ss_pred             CCCcCcEEEEEEccCCCCCEEEEEe------CCCeEEEEeCCCceeeEee
Q psy6984         146 DGHSDWVSCVRFSPNHQNPIIVSAG------WDRMVKVWNLTNCKLKINH  189 (380)
Q Consensus       146 ~~~~~~v~~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~  189 (380)
                      .........+.-.|.--...++.+.      ..|.|+-+|.+++++...+
T Consensus       145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  194 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence            1111000000000000011233332      2367999999998876554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.25  E-value=3.3  Score=36.07  Aligned_cols=27  Identities=7%  Similarity=-0.045  Sum_probs=20.4

Q ss_pred             cCCEEEEeeCCCcEEEEecccceeeeE
Q psy6984         293 DNRQIVSSSRDKTIKLWNTLAHCKFTI  319 (380)
Q Consensus       293 ~~~~l~s~~~dg~v~iw~~~~~~~~~~  319 (380)
                      .+.+++.|+.||.++.+|..++.++.-
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~  500 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            567778899999999998766555443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.00  E-value=0.57  Score=41.31  Aligned_cols=63  Identities=19%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             CCeEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC
Q psy6984         172 DRMVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND  235 (380)
Q Consensus       172 d~~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  235 (380)
                      .|.|.-+|+.+++.....+.+. ++..-.++..|.++++|+.|+.++.+|.++|+.+..+..+.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~  527 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC
Confidence            3678889999888776655332 22221234467788889999999999999999998876543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.72  E-value=3.2  Score=36.21  Aligned_cols=27  Identities=4%  Similarity=0.033  Sum_probs=22.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCceeeEeee
Q psy6984         164 PIIVSAGWDRMVKVWNLTNCKLKINHS  190 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~~~~~~~~  190 (380)
                      .++++|+.|+.++.+|.++++.+..+.
T Consensus       489 glVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         489 NVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            367789999999999999999876655

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.27  E-value=4.2  Score=35.35  Aligned_cols=61  Identities=15%  Similarity=0.179  Sum_probs=41.0

Q ss_pred             eEEEEeCCCceeeEeeeCCccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEecC
Q psy6984         174 MVKVWNLTNCKLKINHSGHTGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVHND  235 (380)
Q Consensus       174 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~  235 (380)
                      .+.-||+.+++.....+... +...-.+.-.|.++++|+.|+.++.+|.++|+.+..+....
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence            56667777777665443221 11111223357788889999999999999999998876543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.04  E-value=4.6  Score=35.34  Aligned_cols=30  Identities=7%  Similarity=-0.049  Sum_probs=22.4

Q ss_pred             eecCCEEEEeeCCCcEEEEecccceeeeEe
Q psy6984         291 SVDNRQIVSSSRDKTIKLWNTLAHCKFTIV  320 (380)
Q Consensus       291 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  320 (380)
                      +-.+.+++.|+.||.++.+|..++..+.-+
T Consensus       481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~  510 (596)
T d1w6sa_         481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (596)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCcEeeEE
Confidence            446778888999999999987666555433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.18  E-value=3.8  Score=31.51  Aligned_cols=179  Identities=12%  Similarity=0.024  Sum_probs=104.9

Q ss_pred             eEEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEe-CCCcEEEEECCCCc----eeeeecccCCCeEEEEE
Q psy6984          40 TLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGS-WDKTLRLWDLAAGK----TTRRFEDHTKDVLSVAF  114 (380)
Q Consensus        40 ~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~----~~~~~~~h~~~v~~~~~  114 (380)
                      .|+..+++....  ..    +......+..+.|.+..++|.-.. ..+.|...++....    ....+......+..+++
T Consensus        11 ~I~~~~l~~~~~--~~----~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAv   84 (266)
T d1ijqa1          11 EVRKMTLDRSEY--TS----LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (266)
T ss_dssp             SEEEEETTSCCC--EE----EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             eEEEEECCCCcc--ee----eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEE
Confidence            577777754321  11    112334567889988887777654 45667766664321    11222233345678899


Q ss_pred             eCCCCEEEE-EeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCCCEEEEE-eCCCeEEEEeCCCceeeEeeeCC
Q psy6984         115 SVDNRQIVS-SSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQNPIIVSA-GWDRMVKVWNLTNCKLKINHSGH  192 (380)
Q Consensus       115 ~~~~~~~~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~  192 (380)
                      .+.+..+.. -...+.|.+.++.......... ........++++|.... ++.+. +..+.|.-.++............
T Consensus        85 D~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~-ly~~~~~~~~~I~r~~~dGs~~~~l~~~~  162 (266)
T d1ijqa1          85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTEN  162 (266)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred             eeccceEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCe-EEEeccCCCcceeEeccCCCceecccccc
Confidence            876666654 4566789999876655444333 33345788999885432 33332 33456766777654443333334


Q ss_pred             ccceEEEEEcCCCCE-EEEEcCCCcEEEEECCCCc
Q psy6984         193 TGYLNTVTVSPDGSL-CASGGKDMNAMLWDLNDGK  226 (380)
Q Consensus       193 ~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~  226 (380)
                      ...++.+++++.++. ..+-...+.|...++....
T Consensus       163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            456789999987664 4454667888888885543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.18  E-value=4.8  Score=31.51  Aligned_cols=220  Identities=12%  Similarity=0.077  Sum_probs=113.7

Q ss_pred             CCcEEEEECCCCce-eeeecccCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeCCCcCcEEEEEEccCCCC
Q psy6984          85 DKTLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVEDGHSDWVSCVRFSPNHQN  163 (380)
Q Consensus        85 d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  163 (380)
                      ..+|.|.|+.+... .++-..    --+.-++|..+.+|.-+ ...+++||+..+.++.....  .+.|.--.|-.+.  
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~--~e~VvfWkWis~~--  114 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISLN--  114 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEESSSS--
T ss_pred             CceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc--CCCcEEEEecCCC--
Confidence            34788999976543 322111    12334678888877665 56899999988776654432  2234333443321  


Q ss_pred             CEEEEEeCCCeEEEEeCCCc-eeeEeeeCC----ccceEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCcEEEEE
Q psy6984         164 PIIVSAGWDRMVKVWNLTNC-KLKINHSGH----TGYLNTVTVSPDGSLCASGG-------KDMNAMLWDLNDGKHLHTL  231 (380)
Q Consensus       164 ~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~  231 (380)
                       .|+-.. +..|..|++... .....+..|    ...|-.-..+++.++++..+       -.|.+.+|..+.....-.-
T Consensus       115 -~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie  192 (327)
T d1utca2         115 -TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE  192 (327)
T ss_dssp             -EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred             -EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence             333332 568999999542 233333333    24566677789999876543       2367889988766432211


Q ss_pred             EecCceEEEEeecCcccceeeeeeeeeccccceEEEEcCCcee---------eeeeecc---ccceeEEEEeecCCEEEE
Q psy6984         232 VHNDIITALCFSPNRSFQKIKLDISRTLQKSNLILYPINHGKM---------ETPFFSL---FRDVLSVAFSVDNRQIVS  299 (380)
Q Consensus       232 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~~~v~~~~~s~~~~~l~s  299 (380)
                      .|...-..+.+.-+.....+-+-..+....+.+.+.++.+...         ..-++..   ..-..++..|+....++.
T Consensus       193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv  272 (327)
T d1utca2         193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL  272 (327)
T ss_dssp             CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred             ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence            1111111111100000000000011122234455555543211         0011111   111346777887777888


Q ss_pred             eeCCCcEEEEecccce
Q psy6984         300 SSRDKTIKLWNTLAHC  315 (380)
Q Consensus       300 ~~~dg~v~iw~~~~~~  315 (380)
                      -+.-|.|+++|+.++.
T Consensus       273 iTK~G~i~lyDleTgt  288 (327)
T d1utca2         273 ITKYGYIHLYDLETGT  288 (327)
T ss_dssp             EETTSEEEEEETTTCC
T ss_pred             EecCcEEEEEEccccc
Confidence            8889999999875543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.07  E-value=5.5  Score=32.07  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=58.1

Q ss_pred             EEEeecCCCCCCcccccccccCCCcceEEEEEccCCCEEEEEeCC-CcEEEEECCCCceeeeec-ccCCCeEEEEEeCCC
Q psy6984          41 LIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLSSDGNYALSGSWD-KTLRLWDLAAGKTTRRFE-DHTKDVLSVAFSVDN  118 (380)
Q Consensus        41 v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~  118 (380)
                      +.+||.....-.. .+. ....|.......++.++|++++.|+.+ ..+.+||..++.-...-. .....-...+..+||
T Consensus        54 ~~~yd~~t~~w~~-~~~-~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGIVSD-RTV-TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEECTTTCCBCC-CEE-EECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEECCCCcEee-cCC-CCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            6688876543221 111 112333334466788999999998766 589999987764432111 011122356667899


Q ss_pred             CEEEEEeCC------CcEEEEeCCCc
Q psy6984         119 RQIVSSSRD------KTIKLWNTLAH  138 (380)
Q Consensus       119 ~~~~s~~~d------~~v~iwd~~~~  138 (380)
                      +.++.|+.+      ..+.+||..+.
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ceeeeccccccccccceeeeecCCCC
Confidence            999888753      35788886554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.05  E-value=5.8  Score=33.21  Aligned_cols=54  Identities=9%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             ccceEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEEe---------cCceEEEEeecCc
Q psy6984         193 TGYLNTVTVSPDGSLCASGGKDMNAMLWDLNDGKHLHTLVH---------NDIITALCFSPNR  246 (380)
Q Consensus       193 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~i~~~~~~~~~  246 (380)
                      -...++|+|.|+|+++++--..|.|++++..+++.......         +.....++++|+.
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            34678999999999998887789999999877764332221         2334578888864

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.88  E-value=6.4  Score=32.57  Aligned_cols=187  Identities=10%  Similarity=0.075  Sum_probs=105.2

Q ss_pred             CCeEEEee-CCCeEEEeecCCCCCCcccccccccCCCcceEEEEEc--cCCCEEEEEeCCC------------------c
Q psy6984          29 PDTILSCS-RDNTLIIWKLTRDDTNYGVPQKRLKGHSHFISDIVLS--SDGNYALSGSWDK------------------T   87 (380)
Q Consensus        29 ~~~l~t~~-~dg~v~vw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~------------------~   87 (380)
                      +++++... .+..|-+=|++.-.... +  ... .....+..+...  |.-.|++.++.+.                  .
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~k-I--i~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDA-I--LEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEE-E--EEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeE-E--Eec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence            44555544 56666666654321110 0  001 112234455543  4556777776632                  2


Q ss_pred             EEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCCC---------------cEEEEe------------------
Q psy6984          88 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRDK---------------TIKLWN------------------  134 (380)
Q Consensus        88 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d~---------------~v~iwd------------------  134 (380)
                      +.+.|..+.+...++.- .+....++++++|+++++.+.+.               .+.+++                  
T Consensus       175 ~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            56788887776665542 23456789999999998876431               122332                  


Q ss_pred             -----CCCc---ceEEEeeCCCcCcEEEEEEccCCCCCEEEEEeCCCeEEEEeCCCcee-----------eEeeeCCccc
Q psy6984         135 -----TLAH---CKFTIVEDGHSDWVSCVRFSPNHQNPIIVSAGWDRMVKVWNLTNCKL-----------KINHSGHTGY  195 (380)
Q Consensus       135 -----~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----------~~~~~~~~~~  195 (380)
                           ....   .....+..+  .....+.++|++.. +++++..+.++.++|+++...           ........-.
T Consensus       254 V~VVD~~~~~~~~v~~yIPVp--KsPHGV~vSPDGKy-i~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg  330 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKH-LCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  330 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEE--SSCCCEEECTTSSE-EEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred             ceeecccccCCcceeEEEecC--CCCCceEECCCCCE-EEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence                 1110   000001101  11335788898763 566778899999999974211           1111112223


Q ss_pred             eEEEEEcCCCCEEEEEcCCCcEEEEECC
Q psy6984         196 LNTVTVSPDGSLCASGGKDMNAMLWDLN  223 (380)
Q Consensus       196 i~~~~~~~~~~~l~~~~~d~~i~i~d~~  223 (380)
                      ....+|+.+|....+---|.+|.-|++.
T Consensus       331 PLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         331 PLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ccccccCCCceEEEEeeccceEEEEecc
Confidence            4557889999777777889999999984

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.81  E-value=12  Score=31.18  Aligned_cols=56  Identities=13%  Similarity=0.100  Sum_probs=37.4

Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEeeC-------CCcCcEEEEEEccCC
Q psy6984         106 TKDVLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVED-------GHSDWVSCVRFSPNH  161 (380)
Q Consensus       106 ~~~v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~  161 (380)
                      -...++|+|.||++.+++--..|.|++++...+........       .-+.....++++|+-
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            34678999999999888776678999987655443322211       112346689999863

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.22  E-value=13  Score=30.58  Aligned_cols=101  Identities=13%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             CCCcceEEEEEccCCCEEEEE-eCC----CcEEEEECCCCceeeeecccCCCeEEEEEeCCCCEEEEEeCC---------
Q psy6984          62 GHSHFISDIVLSSDGNYALSG-SWD----KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSSSRD---------  127 (380)
Q Consensus        62 ~h~~~v~~~~~~~~~~~l~s~-~~d----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~~~d---------  127 (380)
                      ++.-.+....++||+++++-+ +.+    ..|++.|+.+++.+...... .....++|.+|++.|+-...+         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            343345567889999998843 223    36999999999876532111 112467899999988755432         


Q ss_pred             -------CcEEEEeCCCcce--EEEeeC-CCcCcEEEEEEccCCCC
Q psy6984         128 -------KTIKLWNTLAHCK--FTIVED-GHSDWVSCVRFSPNHQN  163 (380)
Q Consensus       128 -------~~v~iwd~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~  163 (380)
                             ..+..+.+.+...  ...... .....+..+..+++++.
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~  246 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY  246 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce
Confidence                   2466665543221  122222 22335666777776653

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.04  E-value=8.5  Score=28.34  Aligned_cols=73  Identities=10%  Similarity=0.138  Sum_probs=37.3

Q ss_pred             eEEEEEeCCCCEEEEEeCCCcEEEEeCCCcceEEEee--------CCCcCcEEEEEEccCCCCCEEEEEeC-CCeEEEEe
Q psy6984         109 VLSVAFSVDNRQIVSSSRDKTIKLWNTLAHCKFTIVE--------DGHSDWVSCVRFSPNHQNPIIVSAGW-DRMVKVWN  179 (380)
Q Consensus       109 v~~~~~~~~~~~~~s~~~d~~v~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd  179 (380)
                      |.+++. .|.+..++|+......+|-+..+.......        +-..+.|..+.+...+... |+++.. .|.+++++
T Consensus       106 I~S~~y-ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~s-fF~adl~SG~lri~t  183 (313)
T d2hu7a1         106 ILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVS-LFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEE-EEEEETTTEEEEEEC
T ss_pred             EEEeee-cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcce-EEEEecccCCEEEec
Confidence            444443 234456688888778888654443322211        1122344455444333322 444444 77888887


Q ss_pred             CCCc
Q psy6984         180 LTNC  183 (380)
Q Consensus       180 ~~~~  183 (380)
                      ...+
T Consensus       184 pkeG  187 (313)
T d2hu7a1         184 SGEG  187 (313)
T ss_dssp             CSSE
T ss_pred             CCCC
Confidence            6543