Psyllid ID: psy7008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MLCSSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRYHDY
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHcccccHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccEcccc
Coil and Loop (DISEMBL)
mlcsspqifvpttgfIGSIVSMCIIKRigkrplslisiggtAFSALTCGIlsykgtvgsqILPFIMLLLLAFFTSIGIAAIPWmllsevfplrsvfryhdy
Flexible Loop (DISEMBL)
mlcsspqifvpttgfigSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRYHDY
Low Complexity Region (SEG)
MLCSSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRYHDY
Disordered region (IsUnstruct)
******QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRY***
Disordered Region (DISOPRED)
***SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVF*****
Disordered Region (DISEMBL)
MLCSSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRYHDY
Disordered Region (DISPRO)
MLCSSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRYHDY
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLCSSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSVFRYHDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
O34718	473	Major myo-inositol transp	yes	N/A	0.762	0.162	0.333	0.0002
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.861	0.107	0.263	0.0003
Q4F7G0	462	Sugar transporter ERD6-li	yes	N/A	0.752	0.164	0.358	0.0009

>sp|O34718|IOLT_BACSU Major myo-inositol transporter IolT OS=Bacillus subtilis (strain 168) GN=iolT PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 16  IGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTS 75
           + + V + ++ R+G+RP+ +  + GT  + L  GI S     GS  LP+++L L   F +
Sbjct: 306 LATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIFSLV-LEGSPALPYVVLSLTVTFLA 364

Query: 76  I---GIAAIPWMLLSEVFPLR 93
                I+ + W++LSE+FPLR
Sbjct: 365 FQQGAISPVTWLMLSEIFPLR 385

Major myo-inositol uptake transporter.
Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 2   LCSSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQI 61
           LC+   I V    FI + ++  +I R+G++ L  IS      + +T G   Y    G  +
Sbjct: 623 LCT---IIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDV 679

Query: 62  -----LPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91
                LP    ++     S+G   IPW+++ E+ P
Sbjct: 680 SQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILP 714

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 18  SIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGS-QILPFIMLL--LLAFFT 74
           SIV M  + R G+RPL +IS  G    +   G+  Y    G  Q L  +ML+  L+ + +
Sbjct: 309 SIVVMLTVDRWGRRPLLMISSIGMCICSFFIGLSYYLQKNGEFQKLCSVMLIVGLVGYVS 368

Query: 75  S--IGIAAIPWMLLSEVFPLR 93
           S  IG+  +PW+++SE+FP+ 
Sbjct: 369 SFGIGLGGLPWVIMSEIFPVN 389

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
347965559	577	AGAP001236-PA [Anopheles gambiae str. PE	0.801	0.140	0.371	6e-08
312372485	422	hypothetical protein AND_20100 [Anophele	0.772	0.184	0.372	3e-07
193664559	530	PREDICTED: facilitated trehalose transpo	0.900	0.171	0.354	3e-07
170043906	566	sugar transporter [Culex quinquefasciatu	0.801	0.143	0.350	1e-06
242003132	387	conserved hypothetical protein [Pediculu	0.762	0.198	0.392	2e-06
193669080	515	PREDICTED: facilitated trehalose transpo	0.762	0.149	0.345	4e-06
152964982	480	sugar transporter [Kineococcus radiotole	0.772	0.162	0.35	7e-06
417748203	449	MFS transporter, sugar porter family [My	0.772	0.173	0.362	1e-05
41409932	476	hypothetical protein MAP3834 [Mycobacter	0.772	0.163	0.362	1e-05
387878107	515	metabolite/sugar transport protein [Myco	0.841	0.165	0.321	1e-05

>gi|347965559|ref|XP_321919.5| AGAP001236-PA [Anopheles gambiae str. PEST] gi|333470456|gb|EAA01784.5| AGAP001236-PA [Anopheles gambiae str. PEST]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 16/97 (16%)

Query: 14  GFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC----------GILSYKGTVGSQ--- 60
           G I +IV M  IK +GKR L++ S+  TA S ++           G  S+    G+    
Sbjct: 364 GLIANIVCMVSIKFVGKRRLAITSMAVTALSCISLSIYAFNTFPPGWTSFDNHPGTSHVT 423

Query: 61  ---ILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRS 94
               +P ++  +LAFFTS+G+  +PW+LLSEVFP R+
Sbjct: 424 SMGYIPMVLFFMLAFFTSVGVLPVPWILLSEVFPFRN 460

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312372485|gb|EFR20437.1| hypothetical protein AND_20100 [Anopheles darlingi]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 16/94 (17%)

Query: 14  GFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKG-----------TVGSQI- 61
           G + +IV M  IK +GKR L+L+S+  TA S +   I ++             T  S + 
Sbjct: 241 GLMANIVCMLSIKFVGKRKLALMSMTVTALSCIGLSIYAFNSLPEGWTSFDIHTDTSHVS 300

Query: 62  ----LPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91
               +P ++  +LAFFTS+G+  +PW+LLSEVFP
Sbjct: 301 SKGYIPMVLFFMLAFFTSVGVLPVPWILLSEVFP 334

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193664559|ref|XP_001946897.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 5/96 (5%)

Query: 3   CSSPQIFVPTT--GFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTV--- 57
           CS+    V T+    +G+++++  + +IGKRP++L+S+   AFS L  G+     T    
Sbjct: 351 CSAQWTLVYTSILTLVGTLLNVLTVAKIGKRPITLVSMALCAFSMLGIGMYMLSTTYFSF 410

Query: 58  GSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLR 93
            S  +P I+L  L FF+  G+  IPWML+SE++P +
Sbjct: 411 SSTWIPMILLNALFFFSGYGVFPIPWMLVSEIYPTK 446

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043906|ref|XP_001849608.1| sugar transporter [Culex quinquefasciatus] gi|167867183|gb|EDS30566.1| sugar transporter [Culex quinquefasciatus]

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 16/97 (16%)

Query: 14  GFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYK----------------GTV 57
           G + +IV M  IK +GKR L+L S+  T+ S ++  I ++                    
Sbjct: 358 GLMANIVCMMSIKFVGKRRLALFSLCFTSLSCISLAIYAFNVFPPGWTSFDVHEKVNTAD 417

Query: 58  GSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRS 94
           G   +P ++  LLAF TS+G+  +PW+LLSEVFP +S
Sbjct: 418 GLNYIPMLLFFLLAFSTSVGVLPVPWILLSEVFPFKS 454

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003132|ref|XP_002422622.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505423|gb|EEB09884.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 7/84 (8%)

Query: 14  GFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKG----TVGSQILPFIMLLL 69
           G +G I  M ++ ++GKR +S++S+ G A   L  G+LS  G       +  +P ++ +L
Sbjct: 211 GMVGYISGMILVPKMGKRWVSILSMLGCA---LINGLLSIYGFFFSDYNALWVPVVLFIL 267

Query: 70  LAFFTSIGIAAIPWMLLSEVFPLR 93
           L F  S+GI  IPWML+SEVFP +
Sbjct: 268 LNFIWSLGIGQIPWMLISEVFPFK 291

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193669080|ref|XP_001943832.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 17  GSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ----ILPFIMLLLLAF 72
           G+++ +C+++ +GKR LSL+S+   A   L+ G  +Y  T         +P ++   L F
Sbjct: 359 GALICICLVRLVGKRVLSLVSMSCCALCCLSLGAYTYLTTQHQWSPVPTIPLLLFCTLYF 418

Query: 73  FTSIGIAAIPWMLLSEVFPLR 93
             ++GI+ +PW+L+SEVFP R
Sbjct: 419 AMNLGISPVPWLLVSEVFPNR 439

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|152964982|ref|YP_001360766.1| sugar transporter [Kineococcus radiotolerans SRS30216] gi|151359499|gb|ABS02502.1| sugar transporter [Kineococcus radiotolerans SRS30216]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 15  FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAF-- 72
            I  ++ + II R+G+R L+LI++ G A + +  G     G  G + +P+I+  L+AF  
Sbjct: 309 LITQLIGLAIIDRVGRRRLTLITLPGAALALIVLGTFFVTGNDGKEQVPYIIATLIAFMA 368

Query: 73  FTSIGIAAIPWMLLSEVFPL 92
           FT+ GI  + W+  SE++PL
Sbjct: 369 FTAGGIQLMGWLTGSEIYPL 388

Source: Kineococcus radiotolerans SRS30216

Species: Kineococcus radiotolerans

Genus: Kineococcus

Family: Kineosporiaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|417748203|ref|ZP_12396650.1| MFS transporter, sugar porter family [Mycobacterium avium subsp. paratuberculosis S397] gi|336460279|gb|EGO39181.1| MFS transporter, sugar porter family [Mycobacterium avium subsp. paratuberculosis S397]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 15  FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAF-- 72
            I  +V + II R+G+R L+LI + G A S    G+L      G  ++P+IM+ L+AF  
Sbjct: 287 LIAQLVGLAIIDRVGRRRLTLIMVPGAAVSLFALGLLFITSDSGRDVIPYIMICLIAFML 346

Query: 73  FTSIGIAAIPWMLLSEVFPL 92
           F   G+  + W+  SE +PL
Sbjct: 347 FNGGGLQVMGWLTGSETYPL 366

Source: Mycobacterium avium subsp. paratuberculosis S397

Species: Mycobacterium avium

Genus: Mycobacterium

Family: Mycobacteriaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|41409932|ref|NP_962768.1| hypothetical protein MAP3834 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398765|gb|AAS06384.1| hypothetical protein MAP_3834 [Mycobacterium avium subsp. paratuberculosis K-10]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 15  FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAF-- 72
            I  +V + II R+G+R L+LI + G A S    G+L      G  ++P+IM+ L+AF  
Sbjct: 314 LIAQLVGLAIIDRVGRRRLTLIMVPGAAVSLFALGLLFITSDSGRDVIPYIMICLIAFML 373

Query: 73  FTSIGIAAIPWMLLSEVFPL 92
           F   G+  + W+  SE +PL
Sbjct: 374 FNGGGLQLMGWLTGSETYPL 393

Source: Mycobacterium avium subsp. paratuberculosis K-10

Species: Mycobacterium avium

Genus: Mycobacterium

Family: Mycobacteriaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

>gi|387878107|ref|YP_006308411.1| metabolite/sugar transport protein [Mycobacterium sp. MOTT36Y] gi|386791565|gb|AFJ37684.1| metabolite/sugar transport protein [Mycobacterium sp. MOTT36Y]

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 8   IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIML 67
           + +  T  I  +V + II R+G+R L+LI + G A S    G++      G  ++ +IM+
Sbjct: 346 VMLGATYVIAQLVGLAIIDRVGRRRLTLIMVPGAAISLFALGLIFVTADSGHDVIAYIMI 405

Query: 68  LLLAF--FTSIGIAAIPWMLLSEVFPL 92
            L+AF  F + G+  + W+  SE +PL
Sbjct: 406 CLIAFMVFNAGGLQLMGWLTGSETYPL 432

Source: Mycobacterium sp. MOTT36Y

Species: Mycobacterium sp. MOTT36Y

Genus: Mycobacterium

Family: Mycobacteriaceae

Order: Actinomycetales

Class: Actinobacteria

Phylum: Actinobacteria

Superkingdom: Bacteria

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0051100	716	CG31100 [Drosophila melanogast	0.297	0.041	0.566	2.8e-07
TAIR|locus:2079802	462	AT3G05400 [Arabidopsis thalian	0.742	0.162	0.325	2.1e-06
TAIR|locus:2096234	458	AT3G05160 [Arabidopsis thalian	0.732	0.161	0.308	3.4e-06
TAIR|locus:505006329	467	AT3G05165 [Arabidopsis thalian	0.732	0.158	0.308	4.5e-06
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	0.742	0.162	0.362	7.2e-06
UNIPROTKB|I3LG15	485	I3LG15 "Uncharacterized protei	0.732	0.152	0.384	7.8e-06
UNIPROTKB|P11169	496	SLC2A3 "Solute carrier family	0.712	0.145	0.35	1.3e-05
TAIR|locus:2094034	539	PMT5 "polyol/monosaccharide tr	0.891	0.166	0.326	1.9e-05
UNIPROTKB|A2VDL2	494	SLC2A3 "Solute carrier family	0.732	0.149	0.371	2.2e-05
UNIPROTKB|P58352	494	SLC2A3 "Solute carrier family	0.732	0.149	0.371	2.2e-05

FB|FBgn0051100 CG31100 [Drosophila melanogaster (taxid:7227)]

 Score = 99 (39.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query:    62 LPFIMLLLLAFFTSIGIAAIPWMLLSEVFP 91
             +P I+LLL AFF+ +GI  +PW+L+ EVFP
Sbjct:   532 VPLILLLLSAFFSHLGIRMLPWILIGEVFP 561

GO:0016021 "integral to membrane" evidence=ISS

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=ISS

GO:0015749 "monosaccharide transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 26/80 (32%), Positives = 45/80 (56%)

Query:    18 SIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI-LSYKGTVG-SQILP---FIMLLLLAF 72
             S++ + ++ R G+RPL + S  G   S +T  +    K   G  +I P   FI +L    
Sbjct:   310 SLMGLILVDRWGRRPLLMTSALGLCLSCITLAVAFGVKDVPGIGKITPIFCFIGILSFTM 369

Query:    73 FTSIGIAAIPWMLLSEVFPL 92
               +IG+ A+PW+++SE+FP+
Sbjct:   370 MFAIGMGALPWIIMSEIFPM 389

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 25/81 (30%), Positives = 50/81 (61%)

Query:    18 SIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY---KGTVGSQILP-FIMLLLLAFF 73
             ++V + ++ R G+RPL L S  G +  +L  G+ S+   +  +  + +P F+ + +L +F
Sbjct:   305 ALVGLILVDRWGRRPLLLASAVGMSIGSLLIGV-SFTLQEMNLFPEFIPVFVFINILVYF 363

Query:    74 T--SIGIAAIPWMLLSEVFPL 92
                +IGI  +PW+++SE+FP+
Sbjct:   364 GFFAIGIGGLPWIIMSEIFPI 384

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 25/81 (30%), Positives = 50/81 (61%)

Query:    18 SIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY---KGTVGSQILP-FIMLLLLAFF 73
             ++V + ++ R G+RPL L S  G +  +L  G+ S+   +  V  +++P F+ + +L +F
Sbjct:   314 ALVGLILVDRWGRRPLLLASAVGMSIGSLLIGV-SFTLQQMNVLPELIPIFVFVNILVYF 372

Query:    74 T--SIGIAAIPWMLLSEVFPL 92
                + GI  +PW+++SE+FP+
Sbjct:   373 GCFAFGIGGLPWVIMSEIFPI 393

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 29/80 (36%), Positives = 46/80 (57%)

Query:    18 SIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGS-QILPFIMLL--LLAFFT 74
             SIV M  + R G+RPL +IS  G    +   G+  Y    G  Q L  +ML+  L+ + +
Sbjct:   309 SIVVMLTVDRWGRRPLLMISSIGMCICSFFIGLSYYLQKNGEFQKLCSVMLIVGLVGYVS 368

Query:    75 S--IGIAAIPWMLLSEVFPL 92
             S  IG+  +PW+++SE+FP+
Sbjct:   369 SFGIGLGGLPWVIMSEIFPV 388

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|I3LG15 I3LG15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 7.8e-06, P = 7.8e-06
 Identities = 30/78 (38%), Positives = 46/78 (58%)

Query:    16 IGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI---LSYKGTVGSQILPFIMLLLLAF 72
             I ++VS+ +++R G+R L LI +GG AF +L   I   L    T  S I    +L+ +AF
Sbjct:   309 IFTVVSLFLVERAGRRTLHLIGLGGMAFCSLLMTISLLLKDNHTWMSFICIGAILVFVAF 368

Query:    73 FTSIGIAAIPWMLLSEVF 90
             F  IG   IPW +++E+F
Sbjct:   369 F-EIGPGPIPWFIVAELF 385

GO:0070837 "dehydroascorbic acid transport" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002080 "acrosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|P11169 SLC2A3 "Solute carrier family 2, facilitated glucose transporter member 3" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 28/80 (35%), Positives = 49/80 (61%)

Query:    16 IGSIVSMCIIKRIGKRPLSLISIGGTAFSA--LTCGIL---SYKGTVGSQILPFIMLLLL 70
             I ++VS+ +++R G+R L +I +GG AF +  +T  +L   +Y G   S +    +L+ +
Sbjct:   317 IFTVVSLFLVERAGRRTLHMIGLGGMAFCSTLMTVSLLLKDNYNGM--SFVCIGAILVFV 374

Query:    71 AFFTSIGIAAIPWMLLSEVF 90
             AFF  IG   IPW +++E+F
Sbjct:   375 AFF-EIGPGPIPWFIVAELF 393

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0019852 "L-ascorbic acid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

TAIR|locus:2094034 PMT5 "polyol/monosaccharide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 32/98 (32%), Positives = 50/98 (51%)

Query:     2 LCSSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCG----IL--SYKG 55
             L ++  + V  T FI  +V+  ++ RIG+RPL L S+GG   S    G    I+  S K 
Sbjct:   333 LLATVAVGVVKTSFI--LVATFLLDRIGRRPLLLTSVGGMVLSLAALGTSLTIIDQSEKK 390

Query:    56 TVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLR 93
              + + ++    ++      SIG   I W+  SE+FPLR
Sbjct:   391 VMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLR 428

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IDA

GO:0005355 "glucose transmembrane transporter activity" evidence=IDA

GO:0005365 "myo-inositol transmembrane transporter activity" evidence=IDA

GO:0015148 "D-xylose transmembrane transporter activity" evidence=IDA

GO:0015168 "glycerol transmembrane transporter activity" evidence=IDA

GO:0015575 "mannitol transmembrane transporter activity" evidence=IDA

GO:0015576 "sorbitol transmembrane transporter activity" evidence=IDA

GO:0015591 "D-ribose transmembrane transporter activity" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

UNIPROTKB|A2VDL2 SLC2A3 "Solute carrier family 2, facilitated glucose transporter member 3" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query:    16 IGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI-LSYKGTVG--SQILPFIMLLLLAF 72
             I ++VS+ +++R G+R L LI +GG AF ++   I L  K      S I    +L+ +AF
Sbjct:   317 IFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKDNYSWMSFICIGAILVFVAF 376

Query:    73 FTSIGIAAIPWMLLSEVF 90
             F  IG   IPW +++E+F
Sbjct:   377 F-EIGPGPIPWFIVAELF 393

GO:0070837 "dehydroascorbic acid transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0002080 "acrosomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

UNIPROTKB|P58352 SLC2A3 "Solute carrier family 2, facilitated glucose transporter member 3" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query:    16 IGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI-LSYKGTVG--SQILPFIMLLLLAF 72
             I ++VS+ +++R G+R L LI +GG AF ++   I L  K      S I    +L+ +AF
Sbjct:   317 IFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKDNYSWMSFICIGAILVFVAF 376

Query:    73 FTSIGIAAIPWMLLSEVF 90
             F  IG   IPW +++E+F
Sbjct:   377 F-EIGPGPIPWFIVAELF 393

GO:0016021 "integral to membrane" evidence=IEA

GO:0005355 "glucose transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	0.002

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 13  TGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVG----SQILPFIMLL 68
             F  + V++ ++ R G+RPL LI   G A      GIL      G    S  +  + +L
Sbjct: 331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFIL 390

Query: 69  LLAFFTSIGIAAIPWMLLSEVFPLR 93
           L   F ++G   +PW+++SE+FPL 
Sbjct: 391 LFIAFFAMGWGPVPWVIVSEIFPLS 415

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 8   IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSA--LTCGILSYKGTVGSQILPFI 65
           I V    F+ + +++ ++ R G+RPL L+   G A     L   +L    + G+ I+  +
Sbjct: 293 IIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIV 352

Query: 66  MLLLLAFFTSIGIAAIPWMLLSEVFPLR 93
            +LL   F ++G   +PW+++SE+FPL 
Sbjct: 353 FILLFIAFFALGWGPVPWVIVSELFPLG 380

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 7   QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIM 66
            I V       +++++  + + G++PL +I   G A    + G   Y    G   L  ++
Sbjct: 312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371

Query: 67  LLLLAFFTSIGIAAIPWMLLSEVFP 91
             + AF  S G   + W+LLSE+FP
Sbjct: 372 FYVAAFAMSWG--PVCWVLLSEIFP 394

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG0569|consensus	485		99.57
KOG0254|consensus	513		99.36
KOG0253|consensus	528		99.23
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.16
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.13
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.03
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.0
KOG0252|consensus	538		98.9
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.89
TIGR00898	505	2A0119 cation transport protein.	98.84
KOG0255|consensus	521		98.8
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.8
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.76
PRK10642	490	proline/glycine betaine transporter; Provisional	98.76
TIGR00898	505	2A0119 cation transport protein.	98.76
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.75
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.75
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.75
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.74
PRK09952	438	shikimate transporter; Provisional	98.74
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.74
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.73
TIGR00893	399	2A0114 d-galactonate transporter.	98.7
KOG0569|consensus	485		98.69
PRK05122	399	major facilitator superfamily transporter; Provisi	98.69
PRK10642	490	proline/glycine betaine transporter; Provisional	98.68
TIGR00891	405	2A0112 putative sialic acid transporter.	98.68
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.68
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.68
TIGR00900	365	2A0121 H+ Antiporter protein.	98.67
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.67
PRK09952	438	shikimate transporter; Provisional	98.67
KOG0254|consensus	513		98.67
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.66
PRK12307	426	putative sialic acid transporter; Provisional	98.64
PRK12382	392	putative transporter; Provisional	98.64
PRK15075	434	citrate-proton symporter; Provisional	98.62
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.61
TIGR00895	398	2A0115 benzoate transport.	98.59
PRK03699	394	putative transporter; Provisional	98.58
PRK15075	434	citrate-proton symporter; Provisional	98.58
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.57
PRK03545	390	putative arabinose transporter; Provisional	98.56
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.56
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.56
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.56
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.55
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.55
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.55
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.54
PRK11663	434	regulatory protein UhpC; Provisional	98.52
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.52
KOG1330|consensus	493		98.51
KOG0252|consensus	538		98.51
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.51
PRK12307	426	putative sialic acid transporter; Provisional	98.5
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.5
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.48
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.48
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.47
TIGR00891	405	2A0112 putative sialic acid transporter.	98.46
PRK03893	496	putative sialic acid transporter; Provisional	98.46
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.45
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.44
PRK10054	395	putative transporter; Provisional	98.44
PLN00028	476	nitrate transmembrane transporter; Provisional	98.44
PRK10091	382	MFS transport protein AraJ; Provisional	98.43
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.42
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.4
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.39
TIGR00901	356	2A0125 AmpG-related permease.	98.39
PRK09705	393	cynX putative cyanate transporter; Provisional	98.37
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.35
PRK10504	471	putative transporter; Provisional	98.35
PRK03893	496	putative sialic acid transporter; Provisional	98.35
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.35
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.33
KOG2615|consensus	451		98.31
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.31
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.31
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.3
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.3
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.29
PRK09874	408	drug efflux system protein MdtG; Provisional	98.27
TIGR00895	398	2A0115 benzoate transport.	98.22
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.21
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.2
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.2
PRK03633	381	putative MFS family transporter protein; Provision	98.18
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.17
PRK10489	417	enterobactin exporter EntS; Provisional	98.16
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.15
TIGR00900	365	2A0121 H+ Antiporter protein.	98.14
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.13
PRK11043	401	putative transporter; Provisional	98.12
PRK10133	438	L-fucose transporter; Provisional	98.12
PRK09528	420	lacY galactoside permease; Reviewed	98.1
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.07
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.07
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.06
PRK05122	399	major facilitator superfamily transporter; Provisi	98.04
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.03
PRK12382	392	putative transporter; Provisional	97.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.98
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.98
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.97
PRK15011	393	sugar efflux transporter B; Provisional	97.97
TIGR00893	399	2A0114 d-galactonate transporter.	97.95
KOG0255|consensus	521		97.94
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.91
TIGR00901	356	2A0125 AmpG-related permease.	97.89
PRK11902	402	ampG muropeptide transporter; Reviewed	97.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.87
PRK10489	417	enterobactin exporter EntS; Provisional	97.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.83
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.79
PRK09874	408	drug efflux system protein MdtG; Provisional	97.79
PRK10504	471	putative transporter; Provisional	97.78
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.76
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.75
PTZ00207	591	hypothetical protein; Provisional	97.75
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.71
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.7
PRK11010	491	ampG muropeptide transporter; Validated	97.7
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.69
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.69
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.67
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.65
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.65
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.64
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.58
TIGR00805	633	oat sodium-independent organic anion transporter.	97.58
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.55
PRK11663	434	regulatory protein UhpC; Provisional	97.55
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.54
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.53
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.51
PLN00028	476	nitrate transmembrane transporter; Provisional	97.49
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.48
PF13347	428	MFS_2: MFS/sugar transport protein	97.47
KOG3764|consensus	464		97.46
KOG2532|consensus	466		97.43
PRK11010	491	ampG muropeptide transporter; Validated	97.38
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.37
PRK10429	473	melibiose:sodium symporter; Provisional	97.33
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.33
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.31
PRK10091	382	MFS transport protein AraJ; Provisional	97.24
PRK03699	394	putative transporter; Provisional	97.23
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.22
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.18
PRK03545	390	putative arabinose transporter; Provisional	97.16
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.15
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.13
PRK09705	393	cynX putative cyanate transporter; Provisional	97.13
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.12
PRK09528	420	lacY galactoside permease; Reviewed	97.08
PRK10429	473	melibiose:sodium symporter; Provisional	97.06
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.05
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.03
PRK09669	444	putative symporter YagG; Provisional	97.02
COG2211	467	MelB Na+/melibiose symporter and related transport	96.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.91
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.88
PRK03633	381	putative MFS family transporter protein; Provision	96.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.8
PRK09669	444	putative symporter YagG; Provisional	96.8
PRK10133	438	L-fucose transporter; Provisional	96.67
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.64
PRK10054	395	putative transporter; Provisional	96.64
PRK11902	402	ampG muropeptide transporter; Reviewed	96.63
PF12832	77	MFS_1_like: MFS_1 like family	96.62
KOG2504|consensus	509		96.62
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.61
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.6
PRK11043	401	putative transporter; Provisional	96.58
KOG4686|consensus	459		96.56
PRK11462	460	putative transporter; Provisional	96.54
PRK15011	393	sugar efflux transporter B; Provisional	96.54
KOG2563|consensus	480		96.48
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.46
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.4
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.4
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.38
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.36
PRK11646	400	multidrug resistance protein MdtH; Provisional	96.34
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.3
PRK09848	448	glucuronide transporter; Provisional	96.26
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.23
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.15
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.09
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.06
PRK11462	460	putative transporter; Provisional	96.03
KOG0253|consensus	528		95.91
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.87
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.85
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.79
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.78
PF13347	428	MFS_2: MFS/sugar transport protein	95.71
KOG2533|consensus	495		95.64
COG0477	338	ProP Permeases of the major facilitator superfamil	95.62
KOG1330|consensus	493		95.56
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.48
KOG3762|consensus	618		95.45
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.43
KOG2816|consensus	463		95.38
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.37
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	94.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	94.88
PRK09848	448	glucuronide transporter; Provisional	94.86
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.68
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.35
PRK10213	394	nepI ribonucleoside transporter; Reviewed	94.01
COG2211	467	MelB Na+/melibiose symporter and related transport	93.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	93.57
TIGR00788	468	fbt folate/biopterin transporter. The only functio	93.49
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	93.32
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	92.44
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	92.22
TIGR00788	468	fbt folate/biopterin transporter. The only functio	91.48
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	91.41
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	90.37
KOG3762|consensus	618		89.25
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	87.83
KOG2325|consensus	488		87.5
KOG3098|consensus	461		87.38
KOG2504|consensus	509		86.52
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	84.6
KOG2533|consensus	495		83.43
KOG2563|consensus	480		82.83
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	82.4
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	81.01

>KOG0569|consensus

Probab=99.57  E-value=5.6e-15  Score=99.67  Aligned_cols=97  Identities=25%  Similarity=0.395  Sum_probs=84.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c-CC-CCccHHHHHHHHHHHHHHhhcccc
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-K-GT-VGSQILPFIMLLLLAFFTSIGIAA   80 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~l~~~~~~~~~~~   80 (101)
                      .+.+...+.++++.++++.+++||.|||++++.+..++.++...+..... . .. .+..+..++..++|..+++.|.+|
T Consensus       308 ~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gp  387 (485)
T KOG0569|consen  308 QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGP  387 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCc
Confidence            46788889999999999999999999999999999999888888776543 2 22 455677889999999999999999


Q ss_pred             chhhhecccCCccccccccc
Q psy7008          81 IPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        81 ~~~~~~~El~p~~~R~~~~~  100 (101)
                      ++|.+.+|++|++.|+.+++
T Consensus       388 i~~fi~aELf~~~~R~aa~s  407 (485)
T KOG0569|consen  388 IPWFIGAELFPQSARSAAQS  407 (485)
T ss_pred             hhHHHHHHhCCccchHHHHH
Confidence            99999999999999998764

>KOG0254|consensus

Probab=99.36  E-value=4.4e-12  Score=86.55  Aligned_cols=96  Identities=26%  Similarity=0.547  Sum_probs=83.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c-C----CCCccHHHHHHHHHHHHHHhhcc
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-K-G----TVGSQILPFIMLLLLAFFTSIGI   78 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~~~~~~~l~~~~~~~~~   78 (101)
                      ..+.+.++++.+++.++.+++||+|||++++.+...+.++...++.... + .    .....+..++...++...++.++
T Consensus       333 ~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~  412 (513)
T KOG0254|consen  333 LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGW  412 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccc
Confidence            4567888999999999999999999999999999999999998887654 2 1    22356788888889999999999


Q ss_pred             ccchhhhecccCCccccccccc
Q psy7008          79 AAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        79 ~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      ++++|.+.+|++|.+.|+++.+
T Consensus       413 g~v~w~~~sEifp~~~r~~~~s  434 (513)
T KOG0254|consen  413 GPVPWVIVSEIFPLRLRSKGAS  434 (513)
T ss_pred             ccchhhhhhccCcHhHHhhhHH
Confidence            9999999999999999998764

>KOG0253|consensus

Probab=99.23  E-value=3.9e-11  Score=79.11  Aligned_cols=87  Identities=14%  Similarity=0.185  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+..+..++|.++.++++||+|||+.+....+..+++.++...+-      .......+.+....+.+.++ .+.|.|.
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~------~rn~~tvllf~arafisg~f-qvaYvYt  459 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK------TRNAYTVLLFTARAFISGAF-QVAYVYT  459 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc------CcchhHHHHHHHHHHHhchh-eEEEEec
Confidence            4566788999999999999999999999999999999988876543      11222233333444444444 4578899


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|++|++.|++|.|
T Consensus       460 PEVyPTavRatgvG  473 (528)
T KOG0253|consen  460 PEVYPTAVRATGVG  473 (528)
T ss_pred             Ccccchhhhhcchh
Confidence            99999999999986

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.16  E-value=2.1e-10  Score=78.06  Aligned_cols=87  Identities=22%  Similarity=0.282  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF   90 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~   90 (101)
                      .+..+++.++.+++.||+|||+.+..+.....++..++.....   .............+...+..+.++..+.+.+|++
T Consensus       345 ~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       345 LAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN---HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3456678888999999999999988888777776665554321   1011112222223333345566778888899999


Q ss_pred             Cccccccccc
Q psy7008          91 PLRSVFRYHD  100 (101)
Q Consensus        91 p~~~R~~~~~  100 (101)
                      |++.|+++.+
T Consensus       422 p~~~R~~~~g  431 (502)
T TIGR00887       422 PTRYRSTAHG  431 (502)
T ss_pred             chhHHHHHHH
Confidence            9999999876

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.13  E-value=1.1e-10  Score=82.81  Aligned_cols=88  Identities=16%  Similarity=0.136  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      +.+..+..+++.++++++.||+|||+++..+.++.+++.+++....      .....++..+++.+... +..+..+.+.
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~------s~~~ll~~~~l~g~~~~-~~~~~~~a~~  673 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN------SESAMIALLCLFGGLSI-AAWNALDVLT  673 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc------cHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            5566788899999999999999999999999888888877665432      12223333333333333 2335677789


Q ss_pred             cccCCcccccccccC
Q psy7008          87 SEVFPLRSVFRYHDY  101 (101)
Q Consensus        87 ~El~p~~~R~~~~~~  101 (101)
                      +|++|++.|++++|+
T Consensus       674 aEl~Pt~~Rgta~Gi  688 (742)
T TIGR01299       674 VELYPSDKRATAFGF  688 (742)
T ss_pred             HHHcCHHHHHHHHHH
Confidence            999999999998763

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.03  E-value=1.9e-09  Score=72.55  Aligned_cols=91  Identities=22%  Similarity=0.418  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ....+..+++.++++++.||+|||+.+..+.....++...+.....  ..............+...+..++++..+.+.+
T Consensus       313 ~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (479)
T PRK10077        313 IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS  390 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhccccchhHHHhH
Confidence            3456777889999999999999999999998888887776654321  11122233334445555555556677888999


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |++|++.|+++.+
T Consensus       391 e~~p~~~r~~~~g  403 (479)
T PRK10077        391 EIFPNAIRGKALA  403 (479)
T ss_pred             hhCChhHHHHHHH
Confidence            9999999998875

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.00  E-value=3.5e-12  Score=85.22  Aligned_cols=96  Identities=25%  Similarity=0.493  Sum_probs=71.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc--c-CCCCccHHHHHHHHHHHHHHhhccccch
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY--K-GTVGSQILPFIMLLLLAFFTSIGIAAIP   82 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~   82 (101)
                      .+.+..+..+++.+++.++.||+|||+.++.+.....++...+.....  . .+...+...++...++...++.++++.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~  370 (451)
T PF00083_consen  291 ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLP  370 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccc
Confidence            445566777888888889999999999999998888887777651111  1 1112344555556666677788889999


Q ss_pred             hhhecccCCcccccccccC
Q psy7008          83 WMLLSEVFPLRSVFRYHDY  101 (101)
Q Consensus        83 ~~~~~El~p~~~R~~~~~~  101 (101)
                      +.+.+|+||++.|+++.++
T Consensus       371 ~~~~~ElfPt~~R~~~~~~  389 (451)
T PF00083_consen  371 WIYTAELFPTKVRSTGIGL  389 (451)
T ss_pred             ccccccccccccccccccc
Confidence            9999999999999998764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252|consensus

Probab=98.90  E-value=7.6e-11  Score=79.16  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .+.....++|.++...++|++|||+.++.+++++++..+.++..+.+  .......+++..+..++.+.|.+.....+++
T Consensus       355 iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpa  432 (538)
T KOG0252|consen  355 IIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--LENTIGFVVLYSLTFFFGNFGPNATTFIVPA  432 (538)
T ss_pred             HHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc--ccccCceeehHHHHHHHHhcCCCceeEEeeh
Confidence            44445556677778888999999999999999999888877654321  1133455666777777888899999999999


Q ss_pred             ccCCcccccccccC
Q psy7008          88 EVFPLRSVFRYHDY  101 (101)
Q Consensus        88 El~p~~~R~~~~~~  101 (101)
                      |.||+|.|++.+|+
T Consensus       433 E~FParvR~t~hGI  446 (538)
T KOG0252|consen  433 EIFPARVRSTCHGI  446 (538)
T ss_pred             hhchHHHhhhhhhH
Confidence            99999999998873

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.89  E-value=6.4e-09  Score=70.88  Aligned_cols=94  Identities=9%  Similarity=0.009  Sum_probs=62.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCc-cHHHHHHHHHHHHHHhhccccchh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGS-QILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +.+....+...++.++.+++.||+|||+.+..+..+..++..+...... ..... .+...+...+.....+ +..+...
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~g-~~~~~~~  137 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG-SSPKSVMATLCFWRFWLGVGIG-GDYPLSA  137 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC-cccchHHHHHHHHHHHHHHHHh-hhhHHHH
Confidence            3456667888899999999999999999998888887777766554210 00000 1223333333333322 2335667


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      .+.+|.+|++.|+++.+
T Consensus       138 ~~~~e~~p~~~Rg~~~~  154 (502)
T TIGR00887       138 IITSEFATKKWRGAMMA  154 (502)
T ss_pred             HHHHHhcChhhHHHHHH
Confidence            78999999999998765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=98.84  E-value=1.7e-08  Score=68.54  Aligned_cols=89  Identities=13%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+.++..+++.++.+++.||+|||+.+..+....+++.+.+....    ....+.......+....... ..+..+.+.
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  435 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP----VDLYFLRTALAVLGKFGITS-AFQMVYLYT  435 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            3455677788999999999999999999888888777766554432    11122332322222222222 235567788


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|++|++.|+++.|
T Consensus       436 ~e~~p~~~r~~~~g  449 (505)
T TIGR00898       436 AELYPTVVRNLGVG  449 (505)
T ss_pred             cccccHHHHhhhHh
Confidence            99999999999876

>KOG0255|consensus

Probab=98.80  E-value=1.7e-08  Score=69.05  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +.+.+..++..+|+++.+.+.||+|||+.++.+..+..++....+..       .++......-...+.+..+.....+.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~~~~~~~~~~~~  194 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGFFGSGPLTVGFG  194 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHhhccchhHHhHh
Confidence            45677788899999999999999999999999999998888665542       33343343444444555555677788


Q ss_pred             hecccCCcccccccc
Q psy7008          85 LLSEVFPLRSVFRYH   99 (101)
Q Consensus        85 ~~~El~p~~~R~~~~   99 (101)
                      +.+|+++++.|+.+.
T Consensus       195 ~~~E~~~~~~R~~~~  209 (521)
T KOG0255|consen  195 LVAEIVSPKQRGLAL  209 (521)
T ss_pred             hheeecCcchhhHHH
Confidence            899999999998764

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.80  E-value=2.2e-08  Score=67.51  Aligned_cols=95  Identities=14%  Similarity=-0.002  Sum_probs=60.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc--c---CCCCccHHH-HHHHHHHHHHHhhcc
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY--K---GTVGSQILP-FIMLLLLAFFTSIGI   78 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~-~~~~~l~~~~~~~~~   78 (101)
                      +......+...+++++.+++.||+|||+.++.+.....++.........  .   ......... ++...+.... ..+.
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~-~g~~  137 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG-VGLA  137 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh-HhHH
Confidence            4556667888999999999999999999999988887776665443210  0   001111122 2222222222 2223


Q ss_pred             ccchhhhecccCCccccccccc
Q psy7008          79 AAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        79 ~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      .+....+.+|.+|++.|++..+
T Consensus       138 ~~~~~~~i~e~~~~~~rg~~~~  159 (479)
T PRK10077        138 SMLSPMYIAEIAPAHIRGKLVS  159 (479)
T ss_pred             hhHHHHHHHhhCChhhhhHHHH
Confidence            3556667899999999998764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.76  E-value=2e-08  Score=67.29  Aligned_cols=87  Identities=20%  Similarity=0.073  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCcc-HHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      +...+++++.|++.||+|||+.+..+.....++....+.... +...... ....+...+.... ..+..+....+.+|.
T Consensus        74 ~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g-~g~~~~~~~~~i~e~  152 (432)
T PRK10406         74 LMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS-VGGEYGTSATYMSEV  152 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhh-hhhhHhhHHHHHHHh
Confidence            444589999999999999999999999888888877654320 0000001 1122222222222 222335566788999


Q ss_pred             CCcccccccc
Q psy7008          90 FPLRSVFRYH   99 (101)
Q Consensus        90 ~p~~~R~~~~   99 (101)
                      +|++.|++..
T Consensus       153 ~p~~~rg~~~  162 (432)
T PRK10406        153 AVEGRKGFYA  162 (432)
T ss_pred             CCCCcccHHH
Confidence            9999998754

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.76  E-value=4.1e-08  Score=66.81  Aligned_cols=85  Identities=14%  Similarity=0.078  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc---H---HHHHHHHHHHHHHhhccccchhh
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ---I---LPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      .+...++.++.|++.||+|||+.+..+..+.+++..+.+....    ...   +   ..++...+.... ..+..+....
T Consensus        67 ~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~----~~~~g~~a~~~l~~~R~l~G~g-~g~~~~~~~~  141 (490)
T PRK10642         67 FLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPS----YATIGIWAPILLLLCKMAQGFS-VGGEYTGASI  141 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHhH-hHhhHHHHHH
Confidence            3556789999999999999999999999999888887765321    000   0   122222222222 2233345566


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       142 ~~~e~~p~~~Rg~~~~  157 (490)
T PRK10642        142 FVAEYSPDRKRGFMGS  157 (490)
T ss_pred             HHHHhCCCCCCcHHHH
Confidence            7899999999987643

>TIGR00898 2A0119 cation transport protein

Probab=98.76  E-value=3.2e-08  Score=67.26  Aligned_cols=89  Identities=20%  Similarity=0.142  Sum_probs=61.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +...+..+...++.++.+++.||+|||+.+..+.....++.+.....      ...+...+...+. .....+..+....
T Consensus       131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~r~l~-G~~~~~~~~~~~~  203 (505)
T TIGR00898       131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------PNYTVFLVFRLLV-GMGIGGIWVQAVV  203 (505)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHH-HhhccchHHHHHH
Confidence            44566778889999999999999999999999888887777665432      1222233333322 2222233466777


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       204 ~~~e~~~~~~r~~~~~  219 (505)
T TIGR00898       204 LNTEFLPKKQRAIVGT  219 (505)
T ss_pred             HhheecChhhhHHHHH
Confidence            8999999999987643

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.75  E-value=2.5e-08  Score=56.20  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      ...+...++.++.+++.||+|||+.+..+.....++.......      ...+.......+.....+. ..+..+.+..|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~   78 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS------SNITVLIIARFLQGFGAAF-ALVAGAALIAD   78 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHH-HHHhHHHHHHH
Confidence            4456778899999999999999999888877777666655432      1222333333333333222 23556667899


Q ss_pred             cCCccccccccc
Q psy7008          89 VFPLRSVFRYHD  100 (101)
Q Consensus        89 l~p~~~R~~~~~  100 (101)
                      .+|++.|++..+
T Consensus        79 ~~~~~~~~~~~~   90 (141)
T TIGR00880        79 IYPPEERGVALG   90 (141)
T ss_pred             HCChhhhhHHHH
Confidence            999999988754

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.75  E-value=8.4e-08  Score=63.84  Aligned_cols=95  Identities=31%  Similarity=0.533  Sum_probs=66.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCC---CccHHHHHHHHHHHHHHhhccccc
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTV---GSQILPFIMLLLLAFFTSIGIAAI   81 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~~~~~~~~~   81 (101)
                      ......+...++.++.+++.||++||+.+..+.....++...+..... ....   ...........++...++.+..+.
T Consensus       324 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (481)
T TIGR00879       324 VSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV  403 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCe
Confidence            344556778899999999999999999988887777766665553221 0111   113444444555556666667777


Q ss_pred             hhhhecccCCccccccccc
Q psy7008          82 PWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        82 ~~~~~~El~p~~~R~~~~~  100 (101)
                      .+.+.+|.+|++.|+++.+
T Consensus       404 ~~~~~~~~~p~~~~~~~~~  422 (481)
T TIGR00879       404 PWVIVSEIFPLSLRPKGIS  422 (481)
T ss_pred             ehhhhhccCChHHHHHHHH
Confidence            7888899999999998765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.75  E-value=2.3e-08  Score=71.30  Aligned_cols=89  Identities=15%  Similarity=0.155  Sum_probs=61.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +...+..+..+++.++.+++.||+|||+.++.+.++..++.++.....      ..+...+...+...+.+ +..+....
T Consensus       206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~------s~~~llv~R~l~G~g~g-~~~p~~~~  278 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ------GYGFFLFCRLLSGFGIG-GAIPIVFS  278 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            345566788899999999999999999999998877777766654321      22233333333333332 23466778


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       279 ~isE~~p~~~Rg~~~g  294 (742)
T TIGR01299       279 YFAEFLAQEKRGEHLS  294 (742)
T ss_pred             HHHHHCCHHHHHHHHH
Confidence            8999999999987643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.74  E-value=7e-08  Score=64.66  Aligned_cols=89  Identities=16%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      ......++..+.+++.||++||+.+........+...+......  .............+.....+. ..+..+.+.+|+
T Consensus       288 ~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~  364 (432)
T PRK10406        288 ALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ--NVSSPYAAFGLVMCALLIVSF-YTSISGILKAEM  364 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            34455677778899999999998776665544333322221111  011112222212111111111 123455678999


Q ss_pred             CCcccccccccC
Q psy7008          90 FPLRSVFRYHDY  101 (101)
Q Consensus        90 ~p~~~R~~~~~~  101 (101)
                      +|++.|+++.|+
T Consensus       365 fp~~~r~t~~g~  376 (432)
T PRK10406        365 FPAQVRALGVGL  376 (432)
T ss_pred             CCCCccchhhhH
Confidence            999999998863

>PRK09952 shikimate transporter; Provisional

Probab=98.74  E-value=6.8e-08  Score=64.94  Aligned_cols=88  Identities=11%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      .+....++.++.+++.||+|||+.+..+.....++.........  .....+.......+.....+.. .+..+.+.+|.
T Consensus       295 ~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~  371 (438)
T PRK09952        295 VGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE--AQSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEM  371 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            34556777788999999999999888776655444333322111  0111122222222222222222 24456778999


Q ss_pred             CCccccccccc
Q psy7008          90 FPLRSVFRYHD  100 (101)
Q Consensus        90 ~p~~~R~~~~~  100 (101)
                      +|++.|+++.+
T Consensus       372 ~p~~~r~tg~g  382 (438)
T PRK09952        372 FGASYRYSGAG  382 (438)
T ss_pred             CCcchhHHHHh
Confidence            99999987765

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.74  E-value=4.5e-08  Score=65.10  Aligned_cols=92  Identities=22%  Similarity=0.201  Sum_probs=61.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++.........   ....+..++...+...+.+. ..+....
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~-~~~~~~~  150 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF---ALSVEMLIVGRVLLGIGVGI-ASALVPM  150 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHhhhhH-HHhHHHH
Confidence            3455667888899999999999999999999888887777766543221   11112333333333333222 2345566


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|+++.+
T Consensus       151 ~i~~~~~~~~r~~~~~  166 (481)
T TIGR00879       151 YLSEIAPKALRGALTS  166 (481)
T ss_pred             HHHccCChhhhhhhhh
Confidence            7899999999998765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.73  E-value=3.7e-08  Score=63.85  Aligned_cols=88  Identities=14%  Similarity=-0.076  Sum_probs=61.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+..+..++........      ..+...+...+..... ....+....+
T Consensus        35 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~~  107 (379)
T TIGR00881        35 LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST------SLWVMAALWALNGIFQ-GMGWPPCGRT  107 (379)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHhhc-cccCCchHHH
Confidence            44566677889999999999999999999999888887777665421      2223333333332222 2234556667


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|++..+
T Consensus       108 ~~~~~~~~~r~~~~~  122 (379)
T TIGR00881       108 VTKWFSRSERGTWVS  122 (379)
T ss_pred             HHHhcCHhhheeeEe
Confidence            899999999988765

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.70  E-value=3.7e-08  Score=63.92  Aligned_cols=89  Identities=12%  Similarity=0.031  Sum_probs=61.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....+........      ...+...+...+.....+. ..+....
T Consensus        33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~-~~~~~~~  105 (399)
T TIGR00893        33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA------GAYVSLYILRVLLGAAEAP-FFPGIIL  105 (399)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHh-hhhHHHH
Confidence            44556678888999999999999999999988888777776665542      1223333333343333332 3355566


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       106 ~~~~~~~~~~r~~~~~  121 (399)
T TIGR00893       106 IVASWFPASERATAVS  121 (399)
T ss_pred             HHHHhCCHHHHHHHHH
Confidence            7899999999988764

>KOG0569|consensus

Probab=98.69  E-value=1e-07  Score=65.06  Aligned_cols=92  Identities=21%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +....+..+++++|++..++++||+|||..++...+....+...+.....   .+.....+....+.....+... ....
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~---~~~~e~li~GR~i~Gl~~gl~~-~~~p  138 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS---APSFEMLILGRLIVGLACGLST-GLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhHHHH-HHHH
Confidence            44566778899999999999999999999998888888777777665432   1222233333333333333333 3344


Q ss_pred             hhecccCCcccccccc
Q psy7008          84 MLLSEVFPLRSVFRYH   99 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~   99 (101)
                      .|..|..|++.||...
T Consensus       139 myl~E~sP~~~RG~~g  154 (485)
T KOG0569|consen  139 MYLTEISPKNLRGALG  154 (485)
T ss_pred             HHHhhcChhhhccHHH
Confidence            5789999999999753

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.69  E-value=8.6e-08  Score=63.31  Aligned_cols=94  Identities=12%  Similarity=-0.000  Sum_probs=57.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCC-ccH-HHHHHHHHHHHHHhhccccchh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVG-SQI-LPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      ......+...+..++.|++.||+|||+.+..+.....++..........++.. ... ..++...+.....+. ..+...
T Consensus        56 ~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~  134 (399)
T PRK05122         56 VISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESL-AGTGSI  134 (399)
T ss_pred             HHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHh-hcchHH
Confidence            44556677788999999999999999999998877766655443322100000 111 222222233322222 234445


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      .+..|..|.+.|+++.+
T Consensus       135 ~~~~~~~~~~~r~~~~~  151 (399)
T PRK05122        135 LWGIGRVGALHTGRVIS  151 (399)
T ss_pred             HHHHhhcChhhhccchh
Confidence            56689999999998865

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.68  E-value=1e-07  Score=64.87  Aligned_cols=89  Identities=20%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ....+..+++.++.+++.||+|||+.+..+.....+..........   ............+.....+.+.+. ...+.+
T Consensus       293 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~g~-~~~~~~  368 (490)
T PRK10642        293 IAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN---SNVIGLIFAGLLMLAVILNCFTGV-MASTLP  368 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3445666788888999999999999887776544333322211111   111112222222222222222322 344578


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |++|++.|+++.+
T Consensus       369 ~~~p~~~Rg~~~g  381 (490)
T PRK10642        369 AMFPTHIRYSALA  381 (490)
T ss_pred             HHCCCccchHHHH
Confidence            9999999998765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.68  E-value=8.6e-08  Score=62.86  Aligned_cols=88  Identities=17%  Similarity=0.098  Sum_probs=59.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+....++........      ...+.......+.....+. ..+....+
T Consensus        52 ~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~-~~~~~~~~  124 (405)
T TIGR00891        52 LISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA------PGYITMFIARLVIGIGMGG-EYGSSAAY  124 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhhhh-hhHHHHHH
Confidence            4455677888999999999999999999998888777776665432      1222222333333333222 23445567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+|++.|++..+
T Consensus       125 i~~~~~~~~~~~~~~  139 (405)
T TIGR00891       125 VIESWPKHLRNKASG  139 (405)
T ss_pred             HHHhCChhhhhHHHH
Confidence            889999999988765

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.68  E-value=5.6e-08  Score=64.88  Aligned_cols=88  Identities=14%  Similarity=0.055  Sum_probs=59.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.++..+........      ...+...+...+.....+ +..+....+
T Consensus        48 ~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~~-~~~~~~~~~  120 (412)
T TIGR02332        48 AATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA------TGPESLYLLRILVGIAEA-GFLPGILLY  120 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            4455567778889999999999999999988888888777766542      122223333333333322 233555567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|++..+
T Consensus       121 ~~~~~~~~~rg~~~~  135 (412)
T TIGR02332       121 LTFWFPAYFRARANA  135 (412)
T ss_pred             HHHHcCHHHHHHHHH
Confidence            899999999988754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.68  E-value=1.5e-07  Score=63.72  Aligned_cols=93  Identities=16%  Similarity=0.063  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ..........++.++.|++.||+|||+++..+.+..++..+..+..... .....+...+...+.....+.+ .+....+
T Consensus        69 ~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~  146 (467)
T PRK09556         69 IGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS-GSVSLGLMIALWALSGFFQSTG-GPCSYST  146 (467)
T ss_pred             HHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhcc-chHHHHH
Confidence            4455667778899999999999999999988887777776665543210 0112222333333333333333 3555567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       147 i~~~~~~~~rg~a~g  161 (467)
T PRK09556        147 ITRWTPRRKRGRFLG  161 (467)
T ss_pred             HHHHcCccceeeeEE
Confidence            899999999999876

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.67  E-value=9e-08  Score=61.84  Aligned_cols=93  Identities=9%  Similarity=0.024  Sum_probs=59.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.................. ....+...+...+.....+. ..+....+
T Consensus        39 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~-~~~~~~~~  116 (365)
T TIGR00900        39 AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG-GLNIWQVYVLAGILAIAQAF-FTPAYQAM  116 (365)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            44556677788999999999999999999888877666665554432100 01222233333333333222 33555667


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|++..+
T Consensus       117 ~~~~~~~~~~~~~~~  131 (365)
T TIGR00900       117 LPDLVPEEQLTQANS  131 (365)
T ss_pred             HHhcCCHHHHHHHHh
Confidence            899999999988764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.67  E-value=6.7e-08  Score=65.11  Aligned_cols=90  Identities=20%  Similarity=0.189  Sum_probs=61.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      .+......+...++.++.+++.||+|||+.+..+.....++.......      ...+...+...+. ........+...
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~-G~~~~~~~~~~~  112 (485)
T TIGR00711        40 QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA------PNLELMIIFRVIQ-GFGGGPLIPLSF  112 (485)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc------CCHHHHHHHHHHH-HhhhhhHHHHHH
Confidence            345566778889999999999999999999999888887777665431      1222222222222 222223345566


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      .+..|.+|++.|+++.+
T Consensus       113 ~~i~~~~~~~~r~~~~~  129 (485)
T TIGR00711       113 STLLNIYPPEKRGRAMA  129 (485)
T ss_pred             HHHHHHCCHHHHHHHHH
Confidence            77899999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09952 shikimate transporter; Provisional

Probab=98.67  E-value=6.3e-08  Score=65.11  Aligned_cols=87  Identities=15%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCccH-HHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQI-LPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      +...+++++.+++.||+|||+.+..+....+++..+.+.... +....... .......+.....+ +..+....+.+|.
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g-~~~~~~~~~~~e~  153 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVG-GEWGGAALLAVES  153 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhc-ccHHHHHHHHHHh
Confidence            445688888999999999999999998888888777665321 00000000 12222222222222 2224445678999


Q ss_pred             CCcccccccc
Q psy7008          90 FPLRSVFRYH   99 (101)
Q Consensus        90 ~p~~~R~~~~   99 (101)
                      +|++.|++..
T Consensus       154 ~p~~~rg~~~  163 (438)
T PRK09952        154 APKNKKAFYS  163 (438)
T ss_pred             CCCCCCcHHH
Confidence            9999998654

>KOG0254|consensus

Probab=98.67  E-value=8.8e-08  Score=65.66  Aligned_cols=89  Identities=13%  Similarity=0.105  Sum_probs=65.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      ++.+....+...+++++++++.|++|||+.++.+.+...++..+....      .+.....+...+.....+.. .....
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a------~~~~~l~~GR~l~G~g~G~~-~~~~p  164 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA------PSWYQLIVGRILTGLGVGGA-SVLAP  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhccchhhh-hhcch
Confidence            466778889999999999999999999999999999999988887753      23333334444444333322 24455


Q ss_pred             hhecccCCcccccccc
Q psy7008          84 MLLSEVFPLRSVFRYH   99 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~   99 (101)
                      .|.+|+.|++.|+.-.
T Consensus       165 iy~sEiap~~~RG~l~  180 (513)
T KOG0254|consen  165 VYISEIAPAHIRGTLV  180 (513)
T ss_pred             hhHhhcCChhhhHHHH
Confidence            6899999999998754

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.66  E-value=8.1e-08  Score=61.55  Aligned_cols=89  Identities=19%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++.......      ...+.......+.....+ ...+....
T Consensus        38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~-~~~~~~~~  110 (352)
T cd06174          38 LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA------SSLWLLLVGRFLLGLGGG-ALYPAAAA  110 (352)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHcccc-cccHhHHH
Confidence            34555667888999999999999999999998888888887766542      122223333333322222 23355566


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       111 ~~~~~~~~~~~~~~~~  126 (352)
T cd06174         111 LIAEWFPPKERGRALG  126 (352)
T ss_pred             HHHHhCCccchhhhhh
Confidence            7899999999998765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.64  E-value=1.5e-07  Score=62.64  Aligned_cols=88  Identities=15%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....++........      ..+...+...+.....+ ...+....+
T Consensus        58 ~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~g~g-~~~~~~~~~  130 (426)
T PRK12307         58 LATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS------GVIMLTLSRFIVGMGMA-GEYACASTY  130 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            44556678889999999999999999999999988888777655432      22222232222222222 223445567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+|++.|+++.+
T Consensus       131 ~~~~~~~~~r~~~~~  145 (426)
T PRK12307        131 AVESWPKHLKSKASA  145 (426)
T ss_pred             HHHhCCHhHhhHhhh
Confidence            889999999998765

>PRK12382 putative transporter; Provisional

Probab=98.64  E-value=1.4e-07  Score=62.19  Aligned_cols=94  Identities=9%  Similarity=-0.045  Sum_probs=54.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCcc-HHHHHHHHHHHHHHhhccccchh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      ......+...+.+++.|++.||+|||+.+..+.+...++......... ......+ +...+...+.....+. ..+...
T Consensus        56 ~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~-~~~~~~  134 (392)
T PRK12382         56 AVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQ-LLTGAL  134 (392)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            344556777888999999999999999998887766655433222111 0000112 2222222222222222 223334


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      .+..|.+|++.|+++.+
T Consensus       135 ~~~~~~~~~~~r~~a~~  151 (392)
T PRK12382        135 TWGLGLVGPKHSGKVMS  151 (392)
T ss_pred             HHHHhhCCccccchhhh
Confidence            45689999999998765

>PRK15075 citrate-proton symporter; Provisional

Probab=98.62  E-value=3.5e-07  Score=61.35  Aligned_cols=90  Identities=20%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH-HHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC-GILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ..+..+..+++.++.+++.||+|||+.+..+.........+. .....   .................++ ...+..+.+
T Consensus       280 ~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g-~~~~~~~~~  355 (434)
T PRK15075        280 TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA---APSFARMLAVELWLSFLYG-SYNGAMVVA  355 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence            445567778889999999999999998776554433222111 11111   1111111111111112222 223444567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       356 ~~e~~p~~~rg~~~g  370 (434)
T PRK15075        356 LTEVMPAEVRTAGFS  370 (434)
T ss_pred             HHHHCCCCccchhee
Confidence            899999999999875

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.61  E-value=1.2e-07  Score=62.80  Aligned_cols=88  Identities=14%  Similarity=-0.033  Sum_probs=58.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....+........      .+.+...+...+.....+. ..+....+
T Consensus        55 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~~~-~~~~~~~~  127 (406)
T PRK11551         55 AFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA------WDFPSLLVARLLTGVGLGG-ALPNLIAL  127 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhHHH-HHHHHHHH
Confidence            4455667778899999999999999999998887777666554432      1222333333333333222 22444567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       128 ~~~~~~~~~r~~~~~  142 (406)
T PRK11551        128 TSEAVGPRLRGTAVS  142 (406)
T ss_pred             HHHHcCHHHHHHHHH
Confidence            889999999988754

>TIGR00895 2A0115 benzoate transport

Probab=98.59  E-value=1.6e-07  Score=61.35  Aligned_cols=88  Identities=19%  Similarity=0.078  Sum_probs=58.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....++.......      ...+.......+.....+ ...+....+
T Consensus        57 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~~  129 (398)
T TIGR00895        57 LFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA------TNVTQLLILRFLAGLGLG-GLMPNLNAL  129 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHhcccc-cchhhHHHH
Confidence            3445567778899999999999999999998887777766655432      122222222222222222 223555677


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       130 ~~~~~~~~~r~~~~~  144 (398)
T TIGR00895       130 VSEYAPKRFRGTAVG  144 (398)
T ss_pred             HHHHcCHHhhchhHh
Confidence            899999999998765

>PRK03699 putative transporter; Provisional

Probab=98.58  E-value=2.8e-07  Score=61.04  Aligned_cols=86  Identities=13%  Similarity=0.106  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...++.++.+++.||+|||+.+..+.....++.......      ...+...+...+.....+... +....+.
T Consensus        48 ~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~G~~~g~~~-~~~~~~i  120 (394)
T PRK03699         48 FTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS------HSLALFSIAMFVLGVVSGITM-SIGTFLI  120 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------chHHHHHHHHHHHHHhhHhhc-cchhHHh
Confidence            344567778999999999999999999988887777776655432      122233333333333333332 3445567


Q ss_pred             cccCCcccccccc
Q psy7008          87 SEVFPLRSVFRYH   99 (101)
Q Consensus        87 ~El~p~~~R~~~~   99 (101)
                      +|.+|++.|++..
T Consensus       121 ~~~~~~~~r~~~~  133 (394)
T PRK03699        121 THVYEGKQRGSRL  133 (394)
T ss_pred             hhhcccchHHHHH
Confidence            8999999998764

>PRK15075 citrate-proton symporter; Provisional

Probab=98.58  E-value=2e-07  Score=62.55  Aligned_cols=81  Identities=20%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc------HHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008          15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ------ILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus        15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      .+++++.+++.||+|||+.+..+.....++........    +...      ...++...+.....+.. .+....+.+|
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e  144 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVP----GYATIGLAAPLLVLLGRLLQGFSAGVE-LGGVSVYLAE  144 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHh
Confidence            46788999999999999999999888888777665421    1010      01122222222222222 2334467899


Q ss_pred             cCCccccccccc
Q psy7008          89 VFPLRSVFRYHD  100 (101)
Q Consensus        89 l~p~~~R~~~~~  100 (101)
                      .+|++.|++..+
T Consensus       145 ~~p~~~rg~~~~  156 (434)
T PRK15075        145 IATPGRKGFYTS  156 (434)
T ss_pred             hCCcccchHHHH
Confidence            999999998764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.57  E-value=2e-07  Score=62.87  Aligned_cols=91  Identities=13%  Similarity=0.098  Sum_probs=58.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccH-HHHHHHHHHHHHHhhccccchhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQI-LPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      ......+...++.++.+++.||+|||+.+..+..+..+....+.....   ...+. .......+.....+... +....
T Consensus        68 ~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~gi~~g~~~-~~~~~  143 (452)
T PRK11273         68 ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---ATSSIAVMFVLLFLCGWFQGMGW-PPCGR  143 (452)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---ccccHHHHHHHHHHHHHHHhccc-hHHHH
Confidence            345566777889999999999999999999988888877776654321   11122 22222233333333322 33334


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      ...|.+|++.|+++.+
T Consensus       144 ~~~~~~~~~~r~~~~~  159 (452)
T PRK11273        144 TMVHWWSQKERGGIVS  159 (452)
T ss_pred             HHHHhCChHHHHHHHH
Confidence            5789999999998765

>PRK03545 putative arabinose transporter; Provisional

Probab=98.56  E-value=2.6e-07  Score=61.05  Aligned_cols=86  Identities=14%  Similarity=-0.023  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ....+...++.++.+.+.||+|||+.+..+.....++.......      ...+...+...+.... .....+....+.+
T Consensus        51 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~-~~~~~~~~~~~i~  123 (390)
T PRK03545         51 TIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------WNFTVLLISRIGIAFA-HAIFWSITASLAI  123 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            34456667788889999999999999999988877776665442      1222222222222222 2222344456778


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |.+|++.|+++.+
T Consensus       124 ~~~~~~~r~~~~g  136 (390)
T PRK03545        124 RVAPAGKKAQALS  136 (390)
T ss_pred             HhCChhhhhhHHH
Confidence            9999999998765

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.56  E-value=2.4e-07  Score=68.22  Aligned_cols=90  Identities=14%  Similarity=0.048  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+..+...+++++.|++.||+|||++++.+..+..+..........   ....+...+...+.... .....+....+.
T Consensus        53 ~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~-~~~~~~~~~~~i  128 (1146)
T PRK08633         53 NALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY---LGWFWLAFAVTFLLGAQ-SAIYSPAKYGII  128 (1146)
T ss_pred             HHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHH-HHhhchHHHhhh
Confidence            34455667788899999999999999998887665555444333221   11222333333333322 233445666789


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|.+.|+++.+
T Consensus       129 ~~~~~~~~r~~~~~  142 (1146)
T PRK08633        129 PELVGKENLSRANG  142 (1146)
T ss_pred             HHhcCcccchhhhh
Confidence            99999999998875

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.56  E-value=2e-07  Score=61.92  Aligned_cols=86  Identities=16%  Similarity=0.077  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ....+...++.++.+.+.||+|||+.+..+.....++.......      ...+...+...+.....+. ..+....+.+
T Consensus        62 ~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~  134 (394)
T PRK10213         62 TVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------NSFSLLLIGRACLGLALGG-FWAMSASLTM  134 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------ChHHHHHHHHHHHHHhhHH-HHHHHHHHHH
Confidence            45567778889999999999999999999988888776655432      1223333333333333332 2355566788


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |.+|++.|+++.+
T Consensus       135 ~~~~~~~~~~a~~  147 (394)
T PRK10213        135 RLVPPRTVPKALS  147 (394)
T ss_pred             HHcCHhHHHHHHH
Confidence            9999999988764

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.56  E-value=2.6e-07  Score=59.53  Aligned_cols=89  Identities=17%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++.......      ...+...+...+.....+ ...+....
T Consensus        36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~-~~~~~~~~  108 (352)
T PF07690_consen   36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------SNFWLLLIARFLLGIGSG-FFSPASNA  108 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------hhHHHHhhhccccccccc-cccccccc
Confidence            34555667889999999999999999999999988888884444321      122333333333333332 23455667


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       109 ~i~~~~~~~~~~~~~~  124 (352)
T PF07690_consen  109 LIADWFPPEERGRAFG  124 (352)
T ss_dssp             HHHHCCCTCCHHHHHH
T ss_pred             cccccchhhhhhhccc
Confidence            7899999999988764

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.55  E-value=1.1e-07  Score=63.17  Aligned_cols=85  Identities=12%  Similarity=0.085  Sum_probs=58.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...+..++.|++.||+|||+++..+.....+....+....      . .  .....+. ........+....+
T Consensus        43 ~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~------~-~--~~~r~l~-G~~~a~~~pa~~a~  112 (393)
T PRK11195         43 LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI------H-P--LLAYGLV-GIGAAAYSPAKYGI  112 (393)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH------H-H--HHHHHHH-HHHHHHHHHHHHHH
Confidence            34455677788899999999999999999999888777665543321      1 1  2222222 22333345667778


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|++|++.|+++.+
T Consensus       113 i~~~~~~~~~~~a~~  127 (393)
T PRK11195        113 LTELLPGEKLVKANG  127 (393)
T ss_pred             HHHHcCHHHHHHHHH
Confidence            899999999998765

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.55  E-value=8e-07  Score=57.91  Aligned_cols=91  Identities=24%  Similarity=0.251  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...++.++.+++.||+|||+.+...................  .....+.............+. ..+..+.+.
T Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  337 (394)
T TIGR00883       261 LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL--DSGSFTLFFFLVLGLALIGGM-YTGPMGSFL  337 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHH-HhhhHHHHH
Confidence            34455677888889999999999999776554444333221111110  011222222323333333322 234456778


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|++.|+++.+
T Consensus       338 ~~~~p~~~~~~~~~  351 (394)
T TIGR00883       338 PELFPTEVRYTGAS  351 (394)
T ss_pred             HHhCCccceeeEee
Confidence            99999999998765

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.55  E-value=1.4e-07  Score=61.61  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....++.......      ...+...+...+.....+. ..+....+
T Consensus        45 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~-~~~~~~~~  117 (385)
T TIGR00710        45 TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS------NNIETLLVLRFVQAFGASA-GSVISQAL  117 (385)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHcchhH-HHHHHHHH
Confidence            4455667778999999999999999999998887777777665442      1222222322332222222 22445567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+|++.|++..+
T Consensus       118 ~~~~~~~~~~~~~~~  132 (385)
T TIGR00710       118 VRDIYPGEELSRIYS  132 (385)
T ss_pred             HHHhcCcHHHHHHHH
Confidence            889999999987654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.54  E-value=2.1e-07  Score=61.44  Aligned_cols=87  Identities=11%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+..+...++.++.+++.||+|||+.+..+.....+........      ...+...+...+.....+ ...+..+.+.
T Consensus        44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~g~~~~-~~~~~~~~~i  116 (392)
T PRK10473         44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA------ETSSLFLAGRFLQGIGAG-CCYVVAFAIL  116 (392)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHhhhh-HHHHHHHHHH
Confidence            344556677888999999999999999998887777776655432      122222222222222222 1234456678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|++.|++..+
T Consensus       117 ~~~~~~~~r~~~~~  130 (392)
T PRK10473        117 RDTLDDRRRAKVLS  130 (392)
T ss_pred             HHHcCHHHHHHHHH
Confidence            89999999988754

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.52  E-value=2.7e-07  Score=61.97  Aligned_cols=88  Identities=19%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....++........      ..+.......+.....+... +....+
T Consensus        63 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~l~g~~~g~~~-~~~~~~  135 (434)
T PRK11663         63 LATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS------SLWAFALLWVLNAFFQGWGW-PVCAKL  135 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHccc-hHHHHH
Confidence            34456677888999999999999999999998888887777655421      22222222222333333332 445567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|++..+
T Consensus       136 ~~~~~~~~~rg~~~~  150 (434)
T PRK11663        136 LTAWYSRTERGGWWA  150 (434)
T ss_pred             HHHhCCHHHHHHHHH
Confidence            899999999998764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.52  E-value=8e-07  Score=60.99  Aligned_cols=87  Identities=10%  Similarity=0.042  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ........++.++++++.||+ |||+.+..+.....++...+....     ...........+.....+ ...+....+.
T Consensus        52 ~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-----~~~~~~~l~l~li~iG~G-~~~~~~~alv  125 (493)
T PRK15462         52 SAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-----IHPSFLYLSLAIIVCGYG-LFKSNVSCLL  125 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHhcc-cccccHHHHH
Confidence            344566678899999999999 999999998888877765544211     111111111111112211 1234445678


Q ss_pred             cccCCcc--ccccccc
Q psy7008          87 SEVFPLR--SVFRYHD  100 (101)
Q Consensus        87 ~El~p~~--~R~~~~~  100 (101)
                      +|++|++  .|.++.+
T Consensus       126 ~elfp~~~~~R~sgf~  141 (493)
T PRK15462        126 GELYEPTDPRRDGGFS  141 (493)
T ss_pred             HHHCCCCCccccceeh
Confidence            9999986  6877654

>KOG1330|consensus

Probab=98.51  E-value=2.4e-07  Score=62.60  Aligned_cols=90  Identities=12%  Similarity=0.052  Sum_probs=68.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      .+.+....++..+.+++++++.||++||+++.+|..+..++.+..+...      .-|....+..+..++ -....++..
T Consensus        71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~------~Fwq~~l~R~~vGiG-eAs~~~ia~  143 (493)
T KOG1330|consen   71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN------HFWQVLLCRGFVGIG-EASYSPIAP  143 (493)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccc-hhhhcccch
Confidence            4567788899999999999999999999999999999999888776542      223333333333333 334557777


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      .+.+++||...|+++.+
T Consensus       144 s~IaD~f~~~~Rs~~~~  160 (493)
T KOG1330|consen  144 SLIADSFPDDKRSRVLG  160 (493)
T ss_pred             hHhhhcCcchhhhHHHH
Confidence            78999999999998765

>KOG0252|consensus

Probab=98.51  E-value=4e-07  Score=61.72  Aligned_cols=94  Identities=9%  Similarity=0.021  Sum_probs=63.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhh-ccccch
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSI-GIAAIP   82 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~   82 (101)
                      ...+....+..+.|+++.||+.||+|||++.....++..++..+.+.... .+............-+..+.+. +-.|+.
T Consensus        87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~-~~~~~~~m~~L~~~R~~LGiGIGGDYPlS  165 (538)
T KOG0252|consen   87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG-TTSPLGVMMTLCFFRFLLGIGIGGDYPLS  165 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC-CCCCcchhhHHHHHHHHhhccccCCCcch
Confidence            35677788999999999999999999999999998888888874433221 1122111111112222222222 235888


Q ss_pred             hhhecccCCccccccc
Q psy7008          83 WMLLSEVFPLRSVFRY   98 (101)
Q Consensus        83 ~~~~~El~p~~~R~~~   98 (101)
                      .+..+|-...+.|++-
T Consensus       166 AtI~SE~an~~~RGa~  181 (538)
T KOG0252|consen  166 ATIMSESANKKTRGAF  181 (538)
T ss_pred             HHHhhhhhhhccccce
Confidence            8889999999999864

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.51  E-value=2.7e-07  Score=60.42  Aligned_cols=88  Identities=16%  Similarity=0.170  Sum_probs=59.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....++...+....      ..+.......+.....+ ...+....+
T Consensus        31 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~l~g~~~~-~~~~~~~~~  103 (377)
T PRK11102         31 TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ------TIDQLIYMRFLHGLAAA-AASVVINAL  103 (377)
T ss_pred             HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc------cHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34456677788999999999999999999998888887777665421      22222233333332222 223445567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|++..+
T Consensus       104 ~~~~~~~~~~~~~~~  118 (377)
T PRK11102        104 MRDMFPKEEFSRMMS  118 (377)
T ss_pred             HHHhcCHHHHHHHHH
Confidence            889999999988754

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.50  E-value=7.6e-07  Score=59.26  Aligned_cols=87  Identities=17%  Similarity=0.122  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH-Hhhccccchhhhe
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFF-TSIGIAAIPWMLL   86 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~   86 (101)
                      .+..+..+++.++.+++.||++||+.+..+.....+.........     ........ ...+... ...+..+..+.+.
T Consensus       273 ~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  346 (426)
T PRK12307        273 TAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-----QDNYLLLG-ACLFGLMATNVGVGGLVPKFL  346 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----cccHHHHH-HHHHHHHHhcccHhHHHHHHH
Confidence            445677888999999999999999988887766655544333221     11222111 1222221 1223334444567


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      .|.+|++.|+++.|
T Consensus       347 ~~~~p~~~~g~~~g  360 (426)
T PRK12307        347 YDYFPLEVRGLGTG  360 (426)
T ss_pred             HHhCcHHHHhhhhh
Confidence            89999999999876

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.50  E-value=7.3e-07  Score=58.03  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++........    . ..+...+...+.... .... +....
T Consensus        41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----~-~~~~~~~~~~~~g~~-~~~~-~~~~~  113 (366)
T TIGR00886        41 NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----Q-SYSVLLLLRLFIGIA-GGSF-ASCMP  113 (366)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHh-chhh-HhHHH
Confidence            455666788899999999999999999999998888888776655421    0 222222222222222 2222 33445


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       114 ~~~~~~~~~~r~~~~~  129 (366)
T TIGR00886       114 WISFFFPKKIQGTALG  129 (366)
T ss_pred             HHHHhcCHhhhhHHHH
Confidence            6889999999988764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.48  E-value=4.8e-07  Score=60.53  Aligned_cols=88  Identities=14%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ...+..+...++.++.+++.||+|||+.+..+.....++.......      ...+...+...+.....+ ...+..+.+
T Consensus        56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a------~~~~~l~~~r~l~Gi~~~-~~~~~~~~~  128 (413)
T PRK15403         56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT------TSMTQFLIARFIQGTSIC-FIATVGYVT  128 (413)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3445567778889999999999999999998888777776655432      122222232232222222 223445567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+|++.|.+..+
T Consensus       129 ~~~~~~~~~~~~~~~  143 (413)
T PRK15403        129 VQEAFGQTKGIKLMA  143 (413)
T ss_pred             HHHhcCHHHHHHHHH
Confidence            889999988876543

>TIGR00897 2A0118 polyol permease family

Probab=98.48  E-value=5.3e-07  Score=59.93  Aligned_cols=91  Identities=7%  Similarity=-0.076  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      ......+...++.++.+++.||+|||+.+..+.....++.........   ...++. ......+.....+. ..+....
T Consensus        53 ~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~i~G~g~~~-~~~~~~~  128 (402)
T TIGR00897        53 AFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL---GHANYPLILLFYGIRGLGYPL-FAYSFLV  128 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc---cCccHHHHHHHHHHHHcchHH-HHhHHHH
Confidence            345566778899999999999999999999888887776554322111   111222 22222222222211 1222334


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      ...|.+|++.|+++.|
T Consensus       129 ~~~~~~~~~~~g~~~g  144 (402)
T TIGR00897       129 WVVYNTKQDNLSSAVG  144 (402)
T ss_pred             HHHHhCCHHHHHHHHH
Confidence            5678899999998865

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.48  E-value=4.5e-07  Score=61.19  Aligned_cols=90  Identities=8%  Similarity=-0.112  Sum_probs=59.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.+...+.........    ....+...+...+. ........+....+
T Consensus        81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~~~-G~~~~~~~~~~~~~  155 (465)
T TIGR00894        81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA----GGGIALVVFCRVIQ-GLAQGSVSPATHKI  155 (465)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHH-HHhcccchhhHHHH
Confidence            34555678889999999999999999999888877777665543221    11122222222222 23333334556667


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|++..+
T Consensus       156 ~~~~~~~~~r~~~~~  170 (465)
T TIGR00894       156 IVKWAPPKERSRLLG  170 (465)
T ss_pred             HHhcCCHHHHHHHHH
Confidence            899999999998765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.47  E-value=6.4e-07  Score=58.04  Aligned_cols=89  Identities=13%  Similarity=0.047  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+..+...++.++.+++.||+|||+.+..+.....++...+....    ............+.....+. ..+....+.
T Consensus       246 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~  320 (377)
T TIGR00890       246 VSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP----MLNDVLFLATVALVFFTWGG-TISLFPSLV  320 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc----cchhHHHHHHHHHHHHHhcc-chhccHHHH
Confidence            4455677888999999999999999988887777766665543321    11111221222222222222 223344568


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|++.|++..|
T Consensus       321 ~~~~~~~~~~~~~g  334 (377)
T TIGR00890       321 SDIFGPANSAANYG  334 (377)
T ss_pred             HHHhhhhhhhhHhH
Confidence            89999999998765

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.46  E-value=1.5e-06  Score=57.06  Aligned_cols=88  Identities=16%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+..+++.++.+++.||+|||+.+..+..............     ....+.......+.... ..+..+....+.
T Consensus       280 ~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (405)
T TIGR00891       280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-----GANVAVLGLGLFFQQML-VQGIWGILPKHL  353 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHH-HccchhhHHHHH
Confidence            345567788999999999999999998877765543332222111     11222222221222222 223334455678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|++.|+++.|
T Consensus       354 ~~~~~~~~~~~~~g  367 (405)
T TIGR00891       354 GEYFPTDQRAAGLG  367 (405)
T ss_pred             hhhCCcchhHHHhh
Confidence            99999999998775

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.46  E-value=5.2e-07  Score=61.17  Aligned_cols=88  Identities=18%  Similarity=0.163  Sum_probs=57.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....+........      .+.+...+...+.... ..+..+....+
T Consensus        60 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~-~~~~~~~~~~~  132 (496)
T PRK03893         60 LISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA------PGYWTLFIARLVIGMG-MAGEYGSSATY  132 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3445567778889999999999999999988887777776665542      1222222222222222 22233445567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+|.+.|+++.+
T Consensus       133 ~~~~~~~~~r~~~~~  147 (496)
T PRK03893        133 VIESWPKHLRNKASG  147 (496)
T ss_pred             HHHHcCHHHHHHHHH
Confidence            889999999987654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.45  E-value=3.4e-07  Score=61.51  Aligned_cols=92  Identities=13%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++.........   ...+.. ......+.....+... +...
T Consensus        65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~l~g~~~g~~~-~~~~  140 (438)
T TIGR00712        65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW---ATSSIAIMFVLLFLNGWFQGMGW-PPCG  140 (438)
T ss_pred             HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhhcch-HHHH
Confidence            3445666778899999999999999999888887777777665443210   111222 2222222222222222 3334


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      ....|.+|++.|+++++
T Consensus       141 ~~i~~~~~~~~rg~~~~  157 (438)
T TIGR00712       141 RTMVHWWSQSERGTIVS  157 (438)
T ss_pred             HHHHHhcCcccchhHHH
Confidence            45789999999998765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.44  E-value=5e-07  Score=58.88  Aligned_cols=84  Identities=21%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccH---HHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008          15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQI---LPFIMLLLLAFFTSIGIAAIPWMLLSEVFP   91 (101)
Q Consensus        15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~El~p   91 (101)
                      .+++++.+++.||+|||+.+..+.....++......... ......+   .......+..... ....+....+.+|.+|
T Consensus        49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~-~~~~~~~~~~~~~~~~  126 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS-YATIGIWAPILLLLARLIQGFSL-GGEWGGAALYLAEYAP  126 (394)
T ss_pred             hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCC-hhhhHHHHHHHHHHHHHHHHhhc-cccccccHHHhhhcCC
Confidence            467889999999999999999988888877766654221 0000001   1122222222211 1223445567899999


Q ss_pred             ccccccccc
Q psy7008          92 LRSVFRYHD  100 (101)
Q Consensus        92 ~~~R~~~~~  100 (101)
                      ++.|++..+
T Consensus       127 ~~~r~~~~~  135 (394)
T TIGR00883       127 PGKRGFYGS  135 (394)
T ss_pred             cccchHHHH
Confidence            999987543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10054 putative transporter; Provisional

Probab=98.44  E-value=5.5e-07  Score=59.89  Aligned_cols=87  Identities=13%  Similarity=0.119  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...+..++.+++.||+|||+.+..+.....++...+....      ..+.......+.....+ ...+....+.
T Consensus        49 ~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~-~~~~~~~~~~  121 (395)
T PRK10054         49 MTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN------NVTLVVLFFALINCAYS-VFSTVLKAWF  121 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3445567788889999999999999998888877766665544321      12222222222222222 2234455667


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|++.|+++.+
T Consensus       122 ~~~~~~~~~~~~~g  135 (395)
T PRK10054        122 ADNLSSTSKTKIFS  135 (395)
T ss_pred             HHhcCHhHHHHHHH
Confidence            89999999988754

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.44  E-value=1e-06  Score=60.02  Aligned_cols=86  Identities=14%  Similarity=0.034  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...++.++.+++.||+|||+.+..+.+...+.........      ..+...+...+.....+ ...+ ...+.
T Consensus        77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~------s~~~l~~~r~l~G~~~~-~~~~-~~~~i  148 (476)
T PLN00028         77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS------SATGFIAVRFFIGFSLA-TFVS-CQYWM  148 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHH-hhHH-HHHHH
Confidence            3445566778899999999999999998888877777665554321      11222222222222222 2222 23357


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|++.|+++.+
T Consensus       149 ~~~~~~~~rg~a~g  162 (476)
T PLN00028        149 STMFNGKIVGTANG  162 (476)
T ss_pred             HHhcChhheeHHHH
Confidence            89999999998764

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.43  E-value=1e-06  Score=58.18  Aligned_cols=89  Identities=11%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+....++........      .+.+...+...+.....+. ..+....
T Consensus        42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~------~~~~~l~~~r~l~G~~~~~-~~~~~~~  114 (382)
T PRK10091         42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS------SSYLMLAIGRLVSGFPHGA-FFGVGAI  114 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHhhhHH-HHHHHHH
Confidence            34556678889999999999999999999999988888877765542      2223333333332222222 2233445


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      ...|.+|++.|++..+
T Consensus       115 ~~~~~~~~~~~~~~~~  130 (382)
T PRK10091        115 VLSKIIKPGKVTAAVA  130 (382)
T ss_pred             HHHHhCChHHhhHHHH
Confidence            6789999988876543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.42  E-value=1.4e-06  Score=57.72  Aligned_cols=88  Identities=16%  Similarity=0.140  Sum_probs=54.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+.........+......      ....+.......+.. ....+..+..+.+
T Consensus       260 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  332 (406)
T PRK11551        260 VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA------APSFAGMLLAGFAAG-LFVVGGQSVLYAL  332 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence            344556778899999999999999999887765555444433322      112222222222222 2222334556677


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       333 ~~~~~p~~~~g~~~g  347 (406)
T PRK11551        333 APLFYPTQVRGTGVG  347 (406)
T ss_pred             HHHHcchhhhhhhhh
Confidence            899999999999876

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.40  E-value=1.1e-06  Score=58.39  Aligned_cols=86  Identities=16%  Similarity=0.133  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...++.++.+.+.||+|||+.+..+.....++.......      ...+.......+.....+ ...+..+...
T Consensus        54 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~-~~~~~~~~~i  126 (406)
T PRK15402         54 MTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA------QSIEQFTLLRFLQGIGLC-FIGAVGYAAI  126 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHhHhh-hHHHHHHHHH
Confidence            445567778888999999999999999988887777776655432      122222222222222222 1234455667


Q ss_pred             cccCCcccccccc
Q psy7008          87 SEVFPLRSVFRYH   99 (101)
Q Consensus        87 ~El~p~~~R~~~~   99 (101)
                      .|.+|++.|.+..
T Consensus       127 ~~~~~~~~~~~~~  139 (406)
T PRK15402        127 QESFEEADAIKIT  139 (406)
T ss_pred             HHHhChhHHHHHH
Confidence            8999999887654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.39  E-value=7.6e-09  Score=69.25  Aligned_cols=92  Identities=14%  Similarity=0.124  Sum_probs=62.1

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +.+....+...+|+++.+++.||+|||+.+..+.....++..+......   ..+.+...+...+..... .+..+....
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~R~~~G~~~-g~~~~~~~~  125 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS---YNNFWMLLIGRFLIGFGI-GGAYVVSPI  125 (451)
T ss_pred             HHHHHHHhhhccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc-ccccccccc
Confidence            3456667888999999999999999999999998888888776654321   112223333333322222 223455677


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +..|..|++.|++...
T Consensus       126 ~~~E~~~~~~R~~~~~  141 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSS  141 (451)
T ss_pred             cccccccccccccccc
Confidence            8999999999987543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00901 2A0125 AmpG-related permease

Probab=98.39  E-value=1.6e-06  Score=56.47  Aligned_cols=88  Identities=11%  Similarity=-0.003  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cC-C--C-CccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008          12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KG-T--V-GSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus        12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~-~--~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      +..+++.++++++.||+|||+.+..+.....+....+..... .+ +  + ...+.......+....... ..+....+.
T Consensus       256 ~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~  334 (356)
T TIGR00901       256 LGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGL-GTVAFVAFL  334 (356)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHH-HHHHHHHHH
Confidence            456788999999999999999888777776665554433221 00 0  0 1112222222232333232 235566788


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      .|.+|++.|++.++
T Consensus       335 ~~~~p~~~~g~~~g  348 (356)
T TIGR00901       335 SKLSNPKFGATQMA  348 (356)
T ss_pred             HHhcCCCccHHHHH
Confidence            99999999998765

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.37  E-value=2.1e-06  Score=56.98  Aligned_cols=87  Identities=15%  Similarity=-0.020  Sum_probs=58.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ..........++.++.+++.||+|||+.+..+....+++........      ..+.......+.....+.. .+.....
T Consensus        49 ~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~------~~~~ll~~r~l~Gig~~~~-~~~~~~~  121 (393)
T PRK09705         49 LTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP------QSALLLSSALLGGVGIGII-QAVMPSV  121 (393)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc------chHHHHHHHHHHHhHHHHH-hhhhhHH
Confidence            34455677788899999999999999999999999999888776532      2222333333333333322 2344445


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+| +.|++.++
T Consensus       122 ~~~~~~-~~~~~~~g  135 (393)
T PRK09705        122 IKRRFQ-QRTPLVMG  135 (393)
T ss_pred             HHHHcc-ccchhHHH
Confidence            788887 66877654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.35  E-value=1.6e-06  Score=59.31  Aligned_cols=89  Identities=11%  Similarity=-0.078  Sum_probs=56.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      |......+......++.+++.||+|||+.+..+.....++.......      ...+..++...+.....+ ...+....
T Consensus        45 ~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a------~~~~~li~~r~l~G~g~~-~~~~~~~~  117 (495)
T PRK14995         45 WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS------PTASWLIATRALLAIGAA-MIVPATLA  117 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            44555667777888999999999999999999998888887776542      222333333333333222 22233333


Q ss_pred             hecccC-Cccccccccc
Q psy7008          85 LLSEVF-PLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~-p~~~R~~~~~  100 (101)
                      ...+.+ |++.|+++.+
T Consensus       118 ~l~~~~~~~~~r~~~~g  134 (495)
T PRK14995        118 GIRATFTEEKQRNMALG  134 (495)
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            344554 7788887654

>PRK10504 putative transporter; Provisional

Probab=98.35  E-value=1.3e-06  Score=58.92  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...++.++.+++.||+|||+.+..+......+......      ....+.......+.....+ ...+....+.
T Consensus        51 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~l~g~~~~-~~~~~~~~~~  123 (471)
T PRK10504         51 IVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL------SGTLNELLLARVLQGVGGA-MMVPVGRLTV  123 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence            34455667788999999999999999988877766666554432      1122222333333332222 2234556678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      .|.+|++.|+++.+
T Consensus       124 ~~~~~~~~~~~~~~  137 (471)
T PRK10504        124 MKIVPREQYMAAMT  137 (471)
T ss_pred             HHHcCHHHHHHHHH
Confidence            89999999987654

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.35  E-value=3.6e-06  Score=57.12  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=53.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....+........     ....................+..+....+
T Consensus       316 ~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (496)
T PRK03893        316 VLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----GGANVWVLGLLLFFQQMLGQGISGLLPKL  390 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----cccHHHHHHHHHHHHHHHhcccchhhHHH
Confidence            3445567788999999999999999998877765555444332211     11121211111111112222333444556


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       391 ~~~~~~~~~~g~~~~  405 (496)
T PRK03893        391 IGGYFDTEQRAAGLG  405 (496)
T ss_pred             HHhhCCHHHhhcccc
Confidence            789999999998876

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.35  E-value=1.9e-06  Score=55.20  Aligned_cols=88  Identities=24%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchH-HHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRP-LSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      ......+...++.++.+++.||++||+ .+..+.....++.......      .+.+.......+.....+ ...+....
T Consensus       216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~~  288 (352)
T cd06174         216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA------PSLALLLVALLLLGFGLG-FAFPALLT  288 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHh-ccchhHHH
Confidence            445667788899999999999999999 8888887777776665542      122333333333333333 33466777


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +..|..|++.|++..+
T Consensus       289 ~~~~~~~~~~~~~~~~  304 (352)
T cd06174         289 LASELAPPEARGTASG  304 (352)
T ss_pred             HHHhhcCHHHHHHHHH
Confidence            8899999999988765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.33  E-value=1.7e-06  Score=57.59  Aligned_cols=84  Identities=14%  Similarity=0.046  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      ..+...+..++.+++.||+|||+.+..+.....+....+...      ++.+.......+.....+ ...+....+..|.
T Consensus        55 ~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~  127 (400)
T PRK11646         55 RQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------HEPWLLWLSCILSGLGGT-LFDPPRTALVIKL  127 (400)
T ss_pred             HHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence            344556667889999999999999999888888877766532      122222232233222222 2234445667899


Q ss_pred             CCccccccccc
Q psy7008          90 FPLRSVFRYHD  100 (101)
Q Consensus        90 ~p~~~R~~~~~  100 (101)
                      +|++.|+++.+
T Consensus       128 ~~~~~~~~a~~  138 (400)
T PRK11646        128 IRPHQRGRFFS  138 (400)
T ss_pred             cCHHHHHHHHH
Confidence            99999988765

>KOG2615|consensus

Probab=98.31  E-value=3.9e-06  Score=55.98  Aligned_cols=87  Identities=20%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ...-..+.+++.+..-|.+.||+|||+.++.+.+...++..+.+...       +....+..-...+.+ -+.-...-++
T Consensus        73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-------~F~afv~aR~l~Gi~-kgnl~v~rAi  144 (451)
T KOG2615|consen   73 LGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-------NFAAFVLARFLGGIF-KGNLSVIRAI  144 (451)
T ss_pred             HhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhc-cCchHHHHHH
Confidence            34456778899999999999999999999999998888776665432       222222212222222 2333456678


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|+.+.+.|+.+++
T Consensus       145 isdV~sek~r~l~ms  159 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMS  159 (451)
T ss_pred             HHhhcChhhccceee
Confidence            999999999998875

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.31  E-value=2.2e-06  Score=56.72  Aligned_cols=87  Identities=15%  Similarity=-0.095  Sum_probs=49.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+++.........+. .....     ...-+.......+.....+  ........
T Consensus        31 ~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~-----~~~~~~l~~~R~l~G~g~~--~~~~~~~~  102 (368)
T TIGR00903        31 LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLD-----PFNYEWLLACQLLAALGQP--FLLNAFAP  102 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHH-----hccHHHHHHHHHHHHhHhH--HHHHHHHH
Confidence            3445567778999999999999999987665443333322 11111     1122222233333222222  11223344


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       103 ~~~~~~~~~r~~a~~  117 (368)
T TIGR00903       103 AASQIREERRDLVIS  117 (368)
T ss_pred             HHHHcCHHHHHHHHH
Confidence            589999999998765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.31  E-value=1.9e-06  Score=57.87  Aligned_cols=90  Identities=10%  Similarity=0.015  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .+..+...++.++.+++.||+|||+++..+.+...+....+.....  +....+.......+.....+.. .+....+.+
T Consensus       258 ~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~--~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~  334 (418)
T TIGR00889       258 SLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP--EYFGYALLFLSMIVYGCAFDFF-NISGSVFVE  334 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc--chhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3445566788889999999999999999988877776555443110  0001112222233333333222 344455789


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |.+|++.|+++++
T Consensus       335 ~~~p~~~~g~~~g  347 (418)
T TIGR00889       335 KEVPVHIRASAQG  347 (418)
T ss_pred             HHCCHHHHHHHHH
Confidence            9999999998875

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.30  E-value=2.7e-06  Score=57.01  Aligned_cols=90  Identities=13%  Similarity=-0.021  Sum_probs=56.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +..........+++++.+++.||+|||+.+..+.....++...+....    ...++. .+....+.....+. ..+...
T Consensus        42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~----~~~~~~~~l~~~~l~G~g~g~-~~~~~~  116 (410)
T TIGR00885        42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA----EIMNYTLFLVGLFILTAGLGF-LETAAN  116 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHhhHHH-HHhhhh
Confidence            345566778889999999999999999999999988888776653321    112222 22222222222222 223334


Q ss_pred             hhecccCCcccccccc
Q psy7008          84 MLLSEVFPLRSVFRYH   99 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~   99 (101)
                      .+.+|+.|++.|++..
T Consensus       117 ~~~~~~~~~~~~~~~~  132 (410)
T TIGR00885       117 PYILVMGPESTATRRL  132 (410)
T ss_pred             HHHHHHCCHhHHHHHH
Confidence            4567888888877654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.30  E-value=3.9e-06  Score=57.55  Aligned_cols=81  Identities=16%  Similarity=0.067  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           9 FVPTTGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ..........+++|++.|| +|||+.+..+.....++..+.....     ...........+. ........+....+.+
T Consensus        58 ~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~-----~~~~ll~~~~~l~-~ig~g~~~~~~~~li~  131 (489)
T PRK10207         58 AFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL-----LKPDLIFIALGTI-AVGNGLFKANPASLLS  131 (489)
T ss_pred             HHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHH-HhccccccCCHHHHHH
Confidence            3444556667789999999 9999999999999888887766422     1111111222222 2222223455567789


Q ss_pred             ccCCcccc
Q psy7008          88 EVFPLRSV   95 (101)
Q Consensus        88 El~p~~~R   95 (101)
                      |.+|++.|
T Consensus       132 ~~~p~~~~  139 (489)
T PRK10207        132 KCYPPKDP  139 (489)
T ss_pred             HhcCCCch
Confidence            99998753

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.29  E-value=1.7e-06  Score=56.03  Aligned_cols=87  Identities=11%  Similarity=-0.023  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....+.........      ..+...+...+.....+... +.....
T Consensus        43 ~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~-~~~~~~  115 (377)
T TIGR00890        43 WFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD------SLAALYLTYGLASAGVGIAY-GIALNT  115 (377)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHH-HhHHHH
Confidence            44566778889999999999999999999998888887776655432      22222222222222222222 222334


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+| +.|++..+
T Consensus       116 ~~~~~~-~~~~~~~~  129 (377)
T TIGR00890       116 AVKWFP-DKRGLASG  129 (377)
T ss_pred             HHHHcC-cccHHHHH
Confidence            567777 45776543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.27  E-value=3.1e-06  Score=55.88  Aligned_cols=85  Identities=16%  Similarity=0.080  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .+..+...++.++.+++.||+|||+.+..+...............      ..+.......+....  .+..+....+..
T Consensus        61 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~--~~~~~~~~~~~~  132 (408)
T PRK09874         61 SITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ------NIWQFLILRALLGLL--GGFVPNANALIA  132 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHh--hhhHHhHHHHHH
Confidence            345566788889999999999999999888877777666554321      222222222222222  122334445677


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |.+|++.|++..+
T Consensus       133 ~~~~~~~~~~~~~  145 (408)
T PRK09874        133 TQVPRNKSGWALG  145 (408)
T ss_pred             HhcCHhhhhHHHH
Confidence            9999999987654

>TIGR00895 2A0115 benzoate transport

Probab=98.22  E-value=5.5e-06  Score=54.14  Aligned_cols=88  Identities=20%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||++||+.... .....+.........     ...+.......+.....+. ..+..+.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~-~~~~~~~~  362 (398)
T TIGR00895       290 GGALFNFGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTL-----FSPTLLLLLGAIAGFFVNG-GQSGLYAL  362 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3445567788999999999999999954443 333333333332211     1222233333333333332 23556678


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|.+|++.|+++.+
T Consensus       363 ~~~~~~~~~~g~~~g  377 (398)
T TIGR00895       363 MALFYPTAIRATGVG  377 (398)
T ss_pred             HhhcCCHHHHHHHHH
Confidence            899999999998765

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.21  E-value=4e-06  Score=58.76  Aligned_cols=88  Identities=11%  Similarity=0.003  Sum_probs=61.3

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      .|.+....+...+..++.+.+.|.+|||..++.+.++..++.++.+..      +..-..++...++...  .+..-...
T Consensus        81 ~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA------~~~~~~iag~~l~Gvg--aG~~~~~~  152 (599)
T PF06609_consen   81 SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA------QNMNTFIAGMVLYGVG--AGVQELAA  152 (599)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC------CcHHHHHHHHHHHHHh--hHHHHHHH
Confidence            355666677788888999999999999999999999988888776532      2222233334444433  23333445


Q ss_pred             hhecccCCcccccccc
Q psy7008          84 MLLSEVFPLRSVFRYH   99 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~   99 (101)
                      ...+|+.|.|.|..+.
T Consensus       153 ~~isEl~p~k~R~~~~  168 (599)
T PF06609_consen  153 LAISELVPNKWRGLGL  168 (599)
T ss_pred             HHHHHhcccchhhhHh
Confidence            5589999999998764

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.20  E-value=6.3e-06  Score=55.90  Aligned_cols=89  Identities=11%  Similarity=0.042  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...++.++.+++.||++||+....................    ....+........... ...+.........
T Consensus       300 ~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~  374 (467)
T PRK09556        300 FTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH----ATSEYMYLASLFALGF-LVFGPQLLIGVAA  374 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence            3445677889999999999999988866554333332221111111    1122222122222221 1122212223456


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      .|.+|++.|+++.|
T Consensus       375 ~~~~p~~~~g~a~g  388 (467)
T PRK09556        375 VGFVPKKAIGVANG  388 (467)
T ss_pred             HhhcchhhHHHHHH
Confidence            79999999998876

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.20  E-value=8.2e-06  Score=54.58  Aligned_cols=89  Identities=15%  Similarity=0.024  Sum_probs=65.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +...++..+..+++++...+.||++||++++....+..++..+....      ++-+..++...+-....+.. -++...
T Consensus        52 ~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA------p~f~~Ll~aR~~~g~a~G~f-~~i~~~  124 (394)
T COG2814          52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA------PSFAVLLLARALAGLAHGVF-WSIAAA  124 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            44567778889999999999999999999999999888888877653      23233333333333333332 366667


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      ..+|+.|++.|+++.+
T Consensus       125 ~a~~lvpp~~~~~Aia  140 (394)
T COG2814         125 LAARLVPPGKRGRALA  140 (394)
T ss_pred             HHHHHcCccchhhHHH
Confidence            7899999999998865

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.18  E-value=5.7e-06  Score=54.60  Aligned_cols=89  Identities=15%  Similarity=-0.014  Sum_probs=55.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....+........      ...+.......+.....+. ..+....
T Consensus        45 ~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~-~~~~~~~  117 (381)
T PRK03633         45 VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM------VGFWSWLAWRFVAGIGCAM-IWVVVES  117 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            34455667788999999999999999999999888887776655432      1222333333333322222 2222223


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      ...|..|++.|++..+
T Consensus       118 ~~~~~~~~~~~~~~~~  133 (381)
T PRK03633        118 ALMCSGTSRNRGRLLA  133 (381)
T ss_pred             HHHHhCCHHHHHHHHH
Confidence            3467788888877654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.17  E-value=1.4e-05  Score=54.57  Aligned_cols=87  Identities=11%  Similarity=-0.086  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .........++.++++++.|| +|||+.+..+.....++...+...      ...+.......+.... .....+....+
T Consensus        54 ~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~------~~~~~~~~~~~l~g~g-~g~~~~~~~~~  126 (475)
T TIGR00924        54 FGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS------IYPDLIFYGLGTIAVG-SGLFKANPSSM  126 (475)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc------ccHhHHHHHHHHHHhc-cccccCCHHHH
Confidence            445567788999999999999 899999999998888877666532      1112222222222221 12233555667


Q ss_pred             ecccCCccc---cccccc
Q psy7008          86 LSEVFPLRS---VFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~---R~~~~~  100 (101)
                      .+|.+|++.   |+++.+
T Consensus       127 ~a~~~~~~~~~~r~~~~~  144 (475)
T TIGR00924       127 VGKLYERGDMPRRDGGFT  144 (475)
T ss_pred             HHHhcCCCCcccccceeh
Confidence            889998754   666544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.16  E-value=3.9e-06  Score=55.93  Aligned_cols=92  Identities=14%  Similarity=0.235  Sum_probs=54.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHhhccccchhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      ......+...+++++.+++.||+|||+.+..+.....++..........  .... +...+...+.....+.. .+....
T Consensus        57 ~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~-~~~~~~  133 (417)
T PRK10489         57 SVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL--PEPSLLAIYLLGLWDGFFGSLG-VTALLA  133 (417)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH-HHHHhh
Confidence            3455667778899999999999999998888776666655444321110  1122 22222222222222222 233345


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|..|++.|+++.+
T Consensus       134 ~~~~~~~~~~~~~~~~  149 (417)
T PRK10489        134 ATPALVGRENLMQAGA  149 (417)
T ss_pred             hhhhccCHHHHHHHHH
Confidence            6789999998887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.15  E-value=5.9e-06  Score=54.62  Aligned_cols=87  Identities=11%  Similarity=0.043  Sum_probs=53.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||+|||+.+..+.....+........      ...+.......+.....+ ...+....+
T Consensus        48 ~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~-~~~~~~~~~  120 (394)
T PRK11652         48 VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA------HSLTVLIAASAIQGLGTG-VGGVMARTL  120 (394)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHhhhh-HHHHHHHHH
Confidence            3455667778899999999999999999988887777766655432      122222222222222221 122344455


Q ss_pred             ecccCCcccccccc
Q psy7008          86 LSEVFPLRSVFRYH   99 (101)
Q Consensus        86 ~~El~p~~~R~~~~   99 (101)
                      ..|.+|.+.|++..
T Consensus       121 ~~~~~~~~~~~~~~  134 (394)
T PRK11652        121 PRDLYEGTQLRHAN  134 (394)
T ss_pred             HHHhcCHHHHHHHH
Confidence            67888877776654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.14  E-value=9.1e-06  Score=52.52  Aligned_cols=88  Identities=13%  Similarity=0.058  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+..+++.++.+++.||.+||+....+....++.........    . ..+...+...+.....+. ..+....+.
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~  326 (365)
T TIGR00900       253 LAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP----P-NFPLFLVLWFAIGVGYGP-INVPQGTLL  326 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc----h-hHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3455677788899999999999999988877666665555443321    1 122333333333333332 235566678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      .|..|++.|++..+
T Consensus       327 ~~~~~~~~~g~~~~  340 (365)
T TIGR00900       327 QRRVPAELLGRVFG  340 (365)
T ss_pred             HHhCCHHHHHHHHH
Confidence            89999999998765

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.13  E-value=1e-05  Score=60.04  Aligned_cols=89  Identities=17%  Similarity=0.026  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .+..+...+.+++.|+++||+|||+++...................   ....+...+...+. ........+....+..
T Consensus        59 ~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~l~-gi~~a~~~p~~~a~l~  134 (1140)
T PRK06814         59 AVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---LNSVPLLFAALFLM-GIHSALFGPIKYSILP  134 (1140)
T ss_pred             HHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHH-HHHHHhhchHHHHhhH
Confidence            3445666788889999999999999753322221111111111110   11222333333333 3333344577788899


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |++|.+.|+++++
T Consensus       135 ~~~~~~~~~~a~~  147 (1140)
T PRK06814        135 DHLNKDELLGANA  147 (1140)
T ss_pred             hhcCccccchhhH
Confidence            9999999998876

>PRK11043 putative transporter; Provisional

Probab=98.12  E-value=1e-05  Score=53.56  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ...+..+...++.++.+++.||+|||+.+..+.....+........      ...+...+...+.....+. ..+....+
T Consensus        46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~l~G~~~~~-~~~~~~~~  118 (401)
T PRK11043         46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------ESAAQLLVLRFVQAVGVCS-AAVIWQAL  118 (401)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence            4455667778899999999999999999988887777666655432      1222222222222222111 12333456


Q ss_pred             ecccCCccccccc
Q psy7008          86 LSEVFPLRSVFRY   98 (101)
Q Consensus        86 ~~El~p~~~R~~~   98 (101)
                      ..|.+|++.|.+.
T Consensus       119 ~~~~~~~~~~~~~  131 (401)
T PRK11043        119 VIDRYPAQKANRV  131 (401)
T ss_pred             HHHhcCcHHHHHH
Confidence            7899998877654

>PRK10133 L-fucose transporter; Provisional

Probab=98.12  E-value=1.4e-05  Score=54.10  Aligned_cols=89  Identities=13%  Similarity=-0.068  Sum_probs=55.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+.+.||+|||+.+..+.....++..++.....   ...-+.......+.....+.. .+....
T Consensus        65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~---a~~~~~ll~~r~l~G~g~g~~-~~~~~~  140 (438)
T PRK10133         65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYTLFLVGLFIIAAGLGCL-ETAANP  140 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence            3445667888999999999999999999999999888888766532110   112222333333333333332 233444


Q ss_pred             hecccCCcccccc
Q psy7008          85 LLSEVFPLRSVFR   97 (101)
Q Consensus        85 ~~~El~p~~~R~~   97 (101)
                      +..|..|.+.|..
T Consensus       141 ~v~~~~~~~~~~~  153 (438)
T PRK10133        141 FVTVLGPESSGHF  153 (438)
T ss_pred             HHHHhCChhhHHH
Confidence            5678777776653

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.10  E-value=2.5e-05  Score=52.21  Aligned_cols=84  Identities=19%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      +..+...++.++.+++.||+|||+.+..+..+.++........      ...+.......+........ .+....+.+|
T Consensus       270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~  342 (420)
T PRK09528        270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA------TGPLEVSILKLLHAFEVPFL-LVGVFKYITL  342 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            3445667889999999999999998888777777665554431      12233222223322222221 1233456789


Q ss_pred             cCCcccccccc
Q psy7008          89 VFPLRSVFRYH   99 (101)
Q Consensus        89 l~p~~~R~~~~   99 (101)
                      .+|++.|++..
T Consensus       343 ~~~~~~~a~~~  353 (420)
T PRK09528        343 NFDVRLSATIY  353 (420)
T ss_pred             HcCccceeeee
Confidence            99999998764

>TIGR00896 CynX cyanate transporter

Probab=98.07  E-value=2.2e-05  Score=51.22  Aligned_cols=87  Identities=14%  Similarity=-0.005  Sum_probs=52.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++.... .      ....+.......+.....+.. .+....
T Consensus        39 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~------~~~~~~l~~~~~~~g~g~~~~-~~~~~~  110 (355)
T TIGR00896        39 LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S------APGTALLFAGTALIGVGIAII-NVLLPS  110 (355)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H------hccHHHHHHHHHHHHHHHHHH-hccchH
Confidence            34556677888999999999999999999888877666555443 1      112222222222222222222 223334


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      ...|.+| +.|++..+
T Consensus       111 ~~~~~~~-~~~~~~~~  125 (355)
T TIGR00896       111 LIKRDFP-QRVGLMTG  125 (355)
T ss_pred             HHHHhCc-chhhHHHH
Confidence            5678886 56776654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.07  E-value=1.3e-05  Score=55.06  Aligned_cols=88  Identities=9%  Similarity=-0.018  Sum_probs=65.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      ...........+..++++++.||+|-|+.+..+.+..++...+.....      ......+...++...-+..+  ..+.
T Consensus        66 ~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~------Sl~~L~i~R~llGvaEA~~~--A~~s  137 (511)
T TIGR00806        66 EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT------SVWHMQLMEVFYSVTMAARI--AYSS  137 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            344556677889999999999999999999999998888888776532      22344444555555544444  5566


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +..+.+|++.|+++++
T Consensus       138 yI~~WfP~kER~rats  153 (511)
T TIGR00806       138 YIFSLVPPSRYQRAAA  153 (511)
T ss_pred             HHHHHCCHHHHHHHHH
Confidence            7899999999999876

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.06  E-value=2.6e-05  Score=53.36  Aligned_cols=90  Identities=14%  Similarity=0.097  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhhh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ..+..+...+..++.+++.||+|.|+.+..+.....+..........  +...++. ..+...+.... +..+ +.....
T Consensus        76 ~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~--~~~~s~~~lli~r~l~Gig-g~~f-~~~~~~  151 (462)
T PRK15034         76 TALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ--NPNTPFGIFIVIALLCGFA-GANF-ASSMGN  151 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc--ccCCCHHHHHHHHHHHHHH-HHhH-HHHHHH
Confidence            33445566677778899999999999988888887777766554311  0112222 22222232222 2223 344556


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .++.||++.|+++.|
T Consensus       152 vs~wfp~~~rG~A~G  166 (462)
T PRK15034        152 ISFFFPKAKQGSALG  166 (462)
T ss_pred             HHHHCCHhHhHHHHH
Confidence            899999999998765

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.04  E-value=2.6e-05  Score=51.60  Aligned_cols=86  Identities=13%  Similarity=0.013  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ....+...++.++.+++.||++||+.+..+.....++.......      ...+.......+.....+... +.......
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~  328 (399)
T PRK05122        256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA------PSPWMALIGAALTGFGFSLVF-PALGVEAV  328 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence            34556677888999999999999998887777666665544431      122233333333333333222 33334567


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |..|++.|+++.+
T Consensus       329 ~~~~~~~~g~~~g  341 (399)
T PRK05122        329 KRVPPQNRGAALG  341 (399)
T ss_pred             HhCCHHHHHHHHH
Confidence            8999999988764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.03  E-value=2.1e-05  Score=54.51  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+..++.++++|.++||++||++++.+.....+....+..... .+....+...+..++.....+. ..|.-....
T Consensus        51 ~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~-~~~~~~~~Ll~~~fl~g~~~a~-~~PA~~A~i  128 (524)
T PF05977_consen   51 QAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAF-FGLLSPWLLLILTFLLGIGSAF-FNPAWQAII  128 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34445667788899999999999999999998877766555544332 0112233333333333333322 346667778


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|+.|++.-..+++
T Consensus       129 p~lV~~~~L~~A~a  142 (524)
T PF05977_consen  129 PELVPKEDLPAANA  142 (524)
T ss_pred             HHhccHhhHHHHHH
Confidence            99999887665543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12382 putative transporter; Provisional

Probab=97.98  E-value=2.2e-05  Score=51.89  Aligned_cols=85  Identities=8%  Similarity=-0.090  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      ...+...++.++.+++.||+|||+....+.....+........      ...+.......+.....+.. .+.......|
T Consensus       257 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~  329 (392)
T PRK12382        257 AFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA------PTAWVALAGAALTGAGCSLI-FPALGVEVVK  329 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHhH-HHHHHHHHHH
Confidence            3445567888899999999999998887777666665544321      12222333333333333222 2334445679


Q ss_pred             cCCccccccccc
Q psy7008          89 VFPLRSVFRYHD  100 (101)
Q Consensus        89 l~p~~~R~~~~~  100 (101)
                      .+|++.|+++.+
T Consensus       330 ~~~~~~~g~~~g  341 (392)
T PRK12382        330 RVPSQVRGTALG  341 (392)
T ss_pred             hcCHHHHHHHHH
Confidence            999999998765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.98  E-value=2.7e-05  Score=52.62  Aligned_cols=90  Identities=11%  Similarity=0.000  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHhhccccchhhh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQ-ILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .....+...++.++.+++.||+|||+.+..+.....++...+.....   ...+ +.......+...+.+....+.. ..
T Consensus       297 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~g~g~~~~~~~~~-~~  372 (485)
T TIGR00711       297 ILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT---PDTPFLAIALPQFIRGFGMGCFFMPLT-TI  372 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            34456778889999999999999999988887777666665442111   1122 2222222233333322222322 33


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|..|++.|+++.+
T Consensus       373 ~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       373 ALSGLPPHKIARGSS  387 (485)
T ss_pred             HHhcCCHHHHhHHHH
Confidence            567889999988765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.98  E-value=4.3e-05  Score=49.87  Aligned_cols=83  Identities=13%  Similarity=-0.028  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHh-HhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLI-SIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ....+...+..++.+.+.||+|||+.+.. +.............      .+..+...+...+.. .......+....+.
T Consensus        40 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g-~~~~~~~p~~~~~~  112 (375)
T TIGR00899        40 TGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW------NRNYFLLLVLGVLLS-SFASTANPQLFALA  112 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHH-hhhhhhHHHHHHHH
Confidence            34456677788889999999998876544 44444444443332      112122222222222 22222334445566


Q ss_pred             cccCCcccccc
Q psy7008          87 SEVFPLRSVFR   97 (101)
Q Consensus        87 ~El~p~~~R~~   97 (101)
                      .|..|++.|..
T Consensus       113 ~~~~~~~~~~~  123 (375)
T TIGR00899       113 REHADRTGREA  123 (375)
T ss_pred             HHHhhhcchhh
Confidence            78888777763

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.97  E-value=1.9e-05  Score=53.60  Aligned_cols=84  Identities=13%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHH-HHHHHHHhhccccchhhhec
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIML-LLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .......++.++.+++.||+|||+.++.+.....+.........      ..+...... .+.....+... +.......
T Consensus        62 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~l~G~~~~~~~-~~~~~~~~  134 (455)
T TIGR00892        62 IMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS------NVIELYLTAGFITGLGLAFNF-QPSLTMLG  134 (455)
T ss_pred             HHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHhcchhhh-hHHHHHHH
Confidence            34445567778899999999999999888877777666554321      111111111 12122222211 22334567


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |.+| +.|+++.+
T Consensus       135 ~~~~-~~r~~a~g  146 (455)
T TIGR00892       135 KYFY-RRRPLANG  146 (455)
T ss_pred             HHHH-hhHHHHHH
Confidence            8886 67877654

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.97  E-value=3.9e-05  Score=50.93  Aligned_cols=83  Identities=16%  Similarity=0.103  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      .....+++.++.+++.||++||+....+............. .     ...+.......+.....+... +....+..|.
T Consensus       261 ~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~  333 (393)
T PRK15011        261 AAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-A-----HSPAILLGLQLLNAIYIGILG-GIGMLYFQDL  333 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-H-----hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            34556778889999999999998777665444433322211 1     122222222222222222211 2233456899


Q ss_pred             CCccccccccc
Q psy7008          90 FPLRSVFRYHD  100 (101)
Q Consensus        90 ~p~~~R~~~~~  100 (101)
                      +|++ |+++.+
T Consensus       334 ~p~~-~g~~~~  343 (393)
T PRK15011        334 MPGQ-AGSATT  343 (393)
T ss_pred             CCCC-cchHHH
Confidence            9965 766543

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.95  E-value=4.4e-05  Score=49.60  Aligned_cols=93  Identities=19%  Similarity=0.230  Sum_probs=48.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHH-HhHhHHHHHHHHHHHHHhc-cCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLS-LISIGGTAFSALTCGILSY-KGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      ......+...++.++.+++.||++||+.. ................... .......+......  ....+..+..+..+
T Consensus       256 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  333 (399)
T TIGR00893       256 MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV--ALGFFGLGAGAIGW  333 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH--HHHHhchhhhhHHH
Confidence            34455677889999999999999988611 1111111111111111000 00011112222111  22222333456778


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      .+.+|.+|++.|+++.+
T Consensus       334 ~~~~~~~~~~~~g~~~~  350 (399)
T TIGR00893       334 ALISDNAPGNIAGLTGG  350 (399)
T ss_pred             HHHHhhcChhHHHHHHH
Confidence            88999999999998765

>KOG0255|consensus

Probab=97.94  E-value=3.7e-05  Score=52.83  Aligned_cols=90  Identities=18%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .........+.........|+.|||.....+.....++.+.......   ....+.......+.....+.++... +.+.
T Consensus       356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  431 (521)
T KOG0255|consen  356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD---DLGGWLHWILPLLGKFFIGSAFNLI-FLYS  431 (521)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            34444577777888889999999999999999998888888777653   1111233333333333444444444 7789


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|++|+..|..+.+
T Consensus       432 ~el~pt~~r~~~~~  445 (521)
T KOG0255|consen  432 AELIPTVVRNTAVG  445 (521)
T ss_pred             HhhccHHHHHHHHH
Confidence            99999999998764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.92  E-value=8.7e-05  Score=49.23  Aligned_cols=22  Identities=9%  Similarity=-0.168  Sum_probs=18.2

Q ss_pred             cchhhhecccCCcccccccccC
Q psy7008          80 AIPWMLLSEVFPLRSVFRYHDY  101 (101)
Q Consensus        80 ~~~~~~~~El~p~~~R~~~~~~  101 (101)
                      +..+.+.+|.+|++.|+++.|+
T Consensus       299 ~~~~~~~~~~~p~~~rgt~~G~  320 (368)
T TIGR00903       299 AIIMDWIGKFCDKELHGKAAGA  320 (368)
T ss_pred             HHHHHHHHHhcchhhcCcccch
Confidence            4456778999999999999874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.91  E-value=6.1e-05  Score=50.46  Aligned_cols=87  Identities=10%  Similarity=0.046  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHH-HHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPL-SLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .....+...++.++.+++.||++||+. ............ .+...     ............+..... ....+..+..
T Consensus       285 ~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~g~-~~~~~~~~~~  357 (412)
T TIGR02332       285 AAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-----TDHNLIQLLGIIMASMGS-FSAMAIFWTT  357 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----cCCHHHHHHHHHHHHHHh-hhhhhHHHhh
Confidence            445567788899999999999997764 333333333322 22111     111111111111111111 1112334555


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+|++.|+++.|
T Consensus       358 ~~~~~~~~~~~~a~g  372 (412)
T TIGR02332       358 PDQSISLQARAIAIA  372 (412)
T ss_pred             cccccchHHHHHHHH
Confidence            678999999998765

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00901 2A0125 AmpG-related permease

Probab=97.89  E-value=4.4e-05  Score=49.79  Aligned_cols=79  Identities=11%  Similarity=-0.026  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhc-----CchHHH-HhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008          18 SIVSMCIIKRI-----GKRPLS-LISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP   91 (101)
Q Consensus        18 ~~~~~~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p   91 (101)
                      .++.+.+.||+     |||+.+ +.+.....+....+....    .......+...............+....+.+|.+|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~  113 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILS  113 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            77889999998     788864 555555555544443221    11121111212112222222234555667899999


Q ss_pred             ccccccccc
Q psy7008          92 LRSVFRYHD  100 (101)
Q Consensus        92 ~~~R~~~~~  100 (101)
                      +|.|+++.+
T Consensus       114 ~~~r~~~~~  122 (356)
T TIGR00901       114 DEELGYGST  122 (356)
T ss_pred             HhhhchHHH
Confidence            999998764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.88  E-value=3.4e-05  Score=51.31  Aligned_cols=81  Identities=15%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhhc-----CchH-HHHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhhhec
Q psy7008          15 FIGSIVSMCIIKRI-----GKRP-LSLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus        15 ~~~~~~~~~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .+..++.+.+.||+     |||+ .+..+....+++...+....    ...+.. ......+. ..+.....+....+.+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~----~~~~~~~l~~~~~~~-~~~~~~~~~~~~al~~  120 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP----PHAALWPLAGLAVLV-AFLSASQDIVFDAYST  120 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC----ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            46778889999999     7765 67776777766666554321    112222 22222222 2333334466677889


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |.+|++.|+++.+
T Consensus       121 ~~~~~~~r~~~~~  133 (402)
T PRK11902        121 DVLHPEERGAGAA  133 (402)
T ss_pred             HhcChhhhhHHHH
Confidence            9999999987654

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.87  E-value=7.1e-05  Score=48.76  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+..+...++.++.+++.||+|||+....+......+...+.....  .....+.............+.+. +..+...
T Consensus       267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~  343 (366)
T TIGR00886       267 ASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV--SPLSLAVFIVLFVALFFFSGAGN-GSTFALV  343 (366)
T ss_pred             HHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHhcccc-chhhhcc
Confidence            34455677888889999999999988776665555444443332110  00022222222222333333333 4456678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|++| +.|++..|
T Consensus       344 ~~~~~-~~~g~~~g  356 (366)
T TIGR00886       344 PHIFR-RATGAVSG  356 (366)
T ss_pred             hhhch-hhcccHHH
Confidence            89888 57777665

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.83  E-value=5.7e-05  Score=50.40  Aligned_cols=87  Identities=21%  Similarity=0.272  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+..+++.++.+++.||.++|+.+..+.....+....+..      ....+.......++....+. ..+....+.
T Consensus       265 ~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  337 (417)
T PRK10489        265 YAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL------MPMWILAVLCLALFGYLSAI-SSLLQYTLL  337 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34556777888889999999877777777666655555444332      11222222222223222221 124445678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      .|..|++.|+++.+
T Consensus       338 ~~~~p~~~~g~~~g  351 (417)
T PRK10489        338 QTQTPDEMLGRING  351 (417)
T ss_pred             HhhCCHHHHHHHHH
Confidence            89999999998765

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.83  E-value=0.00022  Score=49.13  Aligned_cols=73  Identities=11%  Similarity=0.028  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCccc
Q psy7008          16 IGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRS   94 (101)
Q Consensus        16 ~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~~~   94 (101)
                      ...++++++.|| +|||+.+..+.....++...+....     ...........+...+.+ ...+....+.+|.+|++.
T Consensus        72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-----~~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~  145 (500)
T PRK09584         72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-----HDAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDD  145 (500)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCc
Confidence            344678999999 5999999999888877766554321     111112222222222222 123455567899998643

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.79  E-value=7.7e-05  Score=48.70  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008          12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP   91 (101)
Q Consensus        12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p   91 (101)
                      ....++.++.+++.||+|||+.+..+..............      ...+.......+.....+. ..+....+..|..|
T Consensus       246 ~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~  318 (375)
T TIGR00899       246 GLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD------NSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMP  318 (375)
T ss_pred             HHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCc
Confidence            4456677888999999999998877665544433322211      1122222222223222222 22445556789998


Q ss_pred             cccccccc
Q psy7008          92 LRSVFRYH   99 (101)
Q Consensus        92 ~~~R~~~~   99 (101)
                      ++.+ +++
T Consensus       319 ~~~~-~~~  325 (375)
T TIGR00899       319 GRAG-AAT  325 (375)
T ss_pred             chhh-HHH
Confidence            7643 544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.79  E-value=0.00016  Score=47.81  Aligned_cols=83  Identities=11%  Similarity=0.020  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF   90 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~   90 (101)
                      .+...++.+..+++.||++||+.+..+.....+........      ...+.......+.....+. ..+.......|..
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  340 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV------QTPLQLGILRFLLGAADGA-LLPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhC
Confidence            34556677778899999999998888776665554443321      1222222222233322222 2233344556788


Q ss_pred             Cccccccccc
Q psy7008          91 PLRSVFRYHD  100 (101)
Q Consensus        91 p~~~R~~~~~  100 (101)
                      |.+.|++..+
T Consensus       341 ~~~~~g~~~~  350 (408)
T PRK09874        341 SNQIAGRIFS  350 (408)
T ss_pred             Ccccceeeeh
Confidence            8888887764

>PRK10504 putative transporter; Provisional

Probab=97.78  E-value=0.00017  Score=48.89  Aligned_cols=87  Identities=15%  Similarity=0.112  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      ..+...++.++.+++.||+|||+.+..+.....+...++.....   ....+.......+.....+... +....+..|.
T Consensus       306 ~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~  381 (471)
T PRK10504        306 MVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL---LGWYYLLPFVLFLQGMVNSTRF-SSMNTLTLKD  381 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHc
Confidence            34445566678899999999999988887766666555443211   1111111112222222222222 3344567789


Q ss_pred             CCccccccccc
Q psy7008          90 FPLRSVFRYHD  100 (101)
Q Consensus        90 ~p~~~R~~~~~  100 (101)
                      .|.+.|+++++
T Consensus       382 ~~~~~~g~~~~  392 (471)
T PRK10504        382 LPDNLASSGNS  392 (471)
T ss_pred             CCHHhccchHH
Confidence            99999988754

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.76  E-value=0.00028  Score=48.44  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      ..+...+..+++|++.||+|+|+++..+.....++...............-+...+.+.......+.+.+++ +-++++.
T Consensus       295 ~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~  373 (462)
T PRK15034        295 GPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVI  373 (462)
T ss_pred             HHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHH
Confidence            346677788899999999999999988887776666543332210111112222222222223334444343 3357788


Q ss_pred             CCc
Q psy7008          90 FPL   92 (101)
Q Consensus        90 ~p~   92 (101)
                      ||+
T Consensus       374 f~~  376 (462)
T PRK15034        374 FRQ  376 (462)
T ss_pred             Hhh
Confidence            874

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.0002  Score=48.44  Aligned_cols=92  Identities=14%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhc--CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRI--GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      .....=..+++|++++||+.||+  |||.............+.......    +..++...........++-.+++-..-
T Consensus       293 a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----~~~~~~l~~~~l~~iGf~IyGPqmLiG  368 (448)
T COG2271         293 AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----PNGSYLLDAILLFIIGFLIYGPQMLIG  368 (448)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34455578899999999999996  677655443333322222222211    222333333233333334445554556


Q ss_pred             hhecccCCcccccccccC
Q psy7008          84 MLLSEVFPLRSVFRYHDY  101 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~~  101 (101)
                      ....|..|++.-+++.|+
T Consensus       369 l~a~e~~pK~AaGtA~Gf  386 (448)
T COG2271         369 LAAAEFVPKKAAGTATGF  386 (448)
T ss_pred             HHHhccccHhhccchhch
Confidence            678899999999988875

>PTZ00207 hypothetical protein; Provisional

Probab=97.75  E-value=0.00015  Score=51.05  Aligned_cols=83  Identities=14%  Similarity=0.042  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCcccc
Q psy7008          16 IGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRSV   95 (101)
Q Consensus        16 ~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~~~R   95 (101)
                      ...+++|++.||+|||+++..+.+...++.+..+...........+...+...+...+.+ ...+.......+.|| +.|
T Consensus        76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~-~~~~~~~~~i~~~Fp-~~R  153 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCM-LFDLGAVVTVLSVFP-SNR  153 (591)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCh-hhh
Confidence            345578999999999999999999999888877764310000122222222222222211 122233345678887 678


Q ss_pred             ccccc
Q psy7008          96 FRYHD  100 (101)
Q Consensus        96 ~~~~~  100 (101)
                      +++.|
T Consensus       154 G~a~G  158 (591)
T PTZ00207        154 GAVVA  158 (591)
T ss_pred             HHHHH
Confidence            87665

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.71  E-value=0.00028  Score=48.38  Aligned_cols=88  Identities=13%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      ...+...++.++.+++.||+|||+.+..+.....++...+.....   ....+.......+.....+... +.......|
T Consensus       303 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~~~~l~G~g~g~~~-~~~~~~~~~  378 (495)
T PRK14995        303 PVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF---STQQWQAWGLMALLGFSAASAL-LASTSAIMA  378 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHhHHHHH-HHHHHHHHh
Confidence            344667788899999999999999888777766666554433211   1122222222333333333222 233445678


Q ss_pred             cCCccccccccc
Q psy7008          89 VFPLRSVFRYHD  100 (101)
Q Consensus        89 l~p~~~R~~~~~  100 (101)
                      ..|.+.|+.+.+
T Consensus       379 ~~~~~~~g~~~~  390 (495)
T PRK14995        379 AAPPEKAAAAGA  390 (495)
T ss_pred             cCCHHhcchHHH
Confidence            889998887654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.70  E-value=0.00022  Score=47.71  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .+..+..+++.++.+++.||+|||+....+.....++.......     ....+.......+.....+. ..+..+.+.+
T Consensus       264 ~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~  337 (437)
T TIGR00792       264 SIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-----GSNLPLILVLIILAGFGQNF-VTGLVWALVA  337 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----chhHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            34467778888999999999999999888877666655544321     11222222323333333322 2355666777


Q ss_pred             ccCC
Q psy7008          88 EVFP   91 (101)
Q Consensus        88 El~p   91 (101)
                      |..|
T Consensus       338 ~~~~  341 (437)
T TIGR00792       338 DTVD  341 (437)
T ss_pred             hhhh
Confidence            8765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.70  E-value=8.9e-05  Score=50.90  Aligned_cols=80  Identities=15%  Similarity=0.090  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhhc-----CchHH-HHhHhHHHHHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHhhccccchhhhecc
Q psy7008          16 IGSIVSMCIIKRI-----GKRPL-SLISIGGTAFSALTCGILSYKGTVGSQIL-PFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus        16 ~~~~~~~~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      +..++.+.+.||+     |||+. +..+.+...++...++...    ...+.. ......+. ........+....+.+|
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~----~~~~l~~l~~~~~l~-~~~~a~~~i~~~a~~~~  134 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE----PGTQLRWLAALAVVI-AFCSASQDIVFDAWKTD  134 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC----CcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            5778889999999     98875 5566666655555544321    112222 22222222 22333344556678899


Q ss_pred             cCCccccccccc
Q psy7008          89 VFPLRSVFRYHD  100 (101)
Q Consensus        89 l~p~~~R~~~~~  100 (101)
                      .+|++.|+++.+
T Consensus       135 ~~~~~~rg~~~~  146 (491)
T PRK11010        135 VLPAEERGAGAA  146 (491)
T ss_pred             hcChhhhHHHHH
Confidence            999999987654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.69  E-value=8.1e-05  Score=47.94  Aligned_cols=90  Identities=26%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+......++.++.+++.||+++|+...............+.....   ............+.....+. ..+....+.
T Consensus       249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~  324 (352)
T PF07690_consen  249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF---SSSPVWLIIALFLIGFGFGI-VFPILFSLI  324 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH---HCHHHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34455666777889999999999887776666555554444332211   11122222233333333332 346667788


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      .|..|++.|++..+
T Consensus       325 ~~~~~~~~~g~~~g  338 (352)
T PF07690_consen  325 QELVPPEYRGTAFG  338 (352)
T ss_dssp             HCCCHTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHH
Confidence            99999999998765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.69  E-value=0.00023  Score=48.21  Aligned_cols=88  Identities=11%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc--CchHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRI--GKRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~--grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      ....+..+++.++.+++.||+  +||.... .......+....+. ...   ....+............ ..+.......
T Consensus       296 ~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~g~~-~~~~~~~~~~  370 (452)
T PRK11273        296 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-LNP---AGNPTVDMACMIVIGFL-IYGPVMLIGL  370 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH-Hhc---ccChHHHHHHHHHHHHH-HHhHHHHHHH
Confidence            344566778899999999999  5554322 22222222222111 110   11112222212221111 1111122334


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +..|.+|++.|+++.|
T Consensus       371 ~~~~~~p~~~~g~~~g  386 (452)
T PRK11273        371 HALELAPKKAAGTAAG  386 (452)
T ss_pred             HHHHHcChhhhhhHHH
Confidence            5679999999998876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.67  E-value=0.0003  Score=46.02  Aligned_cols=90  Identities=17%  Similarity=0.074  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHH-HHHHHHHHHHHhhccccchhhh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILP-FIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .....+...++.++.+++.||++||+.+..+.....++...+.....  .....+.. .....+.....+. ..+.....
T Consensus       248 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~  324 (385)
T TIGR00710       248 FALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI--LGLGSWAMIIGPMMFVGIGNSM-ISSIAMAY  324 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            34455677889999999999999999887776666655554433221  01111222 2222222222222 22444455


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|..|. .|+++.+
T Consensus       325 ~~~~~~~-~~g~~~~  338 (385)
T TIGR00710       325 ALEDFPH-VAGTASA  338 (385)
T ss_pred             HhccCcc-cchHHHH
Confidence            6788774 5665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.65  E-value=0.00031  Score=46.08  Aligned_cols=38  Identities=11%  Similarity=0.080  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHH
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFS   44 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~   44 (101)
                      .....+...++.++.+++.||+|||+.+..+.......
T Consensus       236 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        236 FALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            34455677888999999999999999888777654443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.65  E-value=0.00021  Score=53.11  Aligned_cols=88  Identities=15%  Similarity=0.011  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+..+++.++.+++.||.++|+.+..+.+...++...+...      ...+..++...++..+.+.. .+....+
T Consensus       274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~-~~~~~~~  346 (1146)
T PRK08633        274 LLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA------PSLASVLVLFFLFGFSAGLF-IVPLNAL  346 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHh-hHHHHHH
Confidence            3444556778889999999999998888777776666655544432      12222333333333333222 2344567


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|..|++.|+++.+
T Consensus       347 ~~~~~p~~~rg~~~~  361 (1146)
T PRK08633        347 IQFRAPEKELGKVLA  361 (1146)
T ss_pred             HhhcCCccchhhhhH
Confidence            789999999998765

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.64  E-value=0.00019  Score=46.60  Aligned_cols=90  Identities=16%  Similarity=0.198  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-chHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIG-KRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~g-rr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      .....+..+++.++.+++.||.. ||+... .................   ................ ....+..+..+.
T Consensus       258 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  333 (379)
T TIGR00881       258 FTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN---PAANPLMDLICLFALG-FLVYGPQMLIGV  333 (379)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHH-HHHhhhhHHHHH
Confidence            44556777889999999999863 333222 11111111111111110   0111112212222221 122233344456


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|+++.+
T Consensus       334 ~~~~~~~~~~~g~~~g  349 (379)
T TIGR00881       334 IASELAPKKAAGTAAG  349 (379)
T ss_pred             HHHHhcCcchhHHHHH
Confidence            7899999999998765

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.58  E-value=0.00049  Score=43.66  Aligned_cols=89  Identities=11%  Similarity=-0.042  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhc-cccchhhhecc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIG-IAAIPWMLLSE   88 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~E   88 (101)
                      .+++..+ .++.|.+.|++|.|..+..+......+...+.....+.....+.+.+.... .....+.+ .+.....-..+
T Consensus        46 ~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~-~l~~~s~~~~~ta~lvt~~~  123 (250)
T PF06813_consen   46 GDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL-FLGGNSSCWFNTASLVTCVR  123 (250)
T ss_pred             HHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH-HHHcccHHHhhhHHHHHHHH
Confidence            3444444 478899999999999999999888888777765553111112222222221 22222222 22333333558


Q ss_pred             cCCcccccccccC
Q psy7008          89 VFPLRSVFRYHDY  101 (101)
Q Consensus        89 l~p~~~R~~~~~~  101 (101)
                      .||. .|+++.|+
T Consensus       124 NFP~-~RG~vvgi  135 (250)
T PF06813_consen  124 NFPR-SRGTVVGI  135 (250)
T ss_pred             hCcc-ccCceehh
Confidence            9984 79988763

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.58  E-value=6.4e-05  Score=53.23  Aligned_cols=48  Identities=4%  Similarity=-0.106  Sum_probs=40.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGIL   51 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~   51 (101)
                      ++......+...+..++.+++.||.+||+.+..+.++.+++.++++..
T Consensus        71 G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp  118 (633)
T TIGR00805        71 GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP  118 (633)
T ss_pred             eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence            345566778888999999999999999999999999999988887654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00046  Score=46.53  Aligned_cols=89  Identities=13%  Similarity=0.029  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .+-.+.+.+.=++.+.+.||+|.|+....+.....+-.+......    +..++.......+.....+ +.-+....+.+
T Consensus        56 aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~----~~~~~~~ll~~gll~G~~G-asFav~m~~~s  130 (417)
T COG2223          56 AIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV----TYPSTWQLLVIGLLLGLAG-ASFAVGMPNAS  130 (417)
T ss_pred             HHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc----cCCchHHHHHHHHHHhccc-ceehccccccc
Confidence            334455556666778999999999988887777666555554432    2222222232333332222 22234445689


Q ss_pred             ccCCcccccccccC
Q psy7008          88 EVFPLRSVFRYHDY  101 (101)
Q Consensus        88 El~p~~~R~~~~~~  101 (101)
                      +-||++.++.+.|+
T Consensus       131 ~~fP~~~qG~AlGI  144 (417)
T COG2223         131 FFFPKEKQGLALGI  144 (417)
T ss_pred             ccCChhhhhHHHHH
Confidence            99999999988763

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.55  E-value=0.00035  Score=47.08  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRI   28 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~   28 (101)
                      .....+...++.++.+++.||+
T Consensus       285 ~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        285 VSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHh
Confidence            3455677889999999999998

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.54  E-value=0.00073  Score=45.58  Aligned_cols=26  Identities=12%  Similarity=0.207  Sum_probs=20.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKR   31 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr   31 (101)
                      ......+.+.++.++.+++.||++|+
T Consensus       292 ~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       292 AYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34556677889999999999999643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.0003  Score=47.65  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+.+-++-.+.+.+.||.+.|..+-.+.+.+++..+.++..      ...+...++..+-..+.+.++.+ +.-..
T Consensus        70 ~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs------~s~~~~~~l~~lng~fQg~Gwpp-~~~~i  142 (448)
T COG2271          70 GSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS------PSLFLFAVLWVLNGWFQGMGWPP-CARTI  142 (448)
T ss_pred             HHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHhcCCCcH-HHHHH
Confidence            345566777888999999999999999999999999999988763      23333444444444555566644 44457


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +.-+|++.|++..+
T Consensus       143 ~~Wfsr~eRG~~~s  156 (448)
T COG2271         143 THWFSRKERGTWWS  156 (448)
T ss_pred             HHHcCccccCceEE
Confidence            89999999998654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.51  E-value=0.00086  Score=44.52  Aligned_cols=83  Identities=16%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      ..+...++....+++.||+|||+.+..+....++.......      ....+.......+........ ......+..|.
T Consensus       263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~  335 (396)
T TIGR00882       263 GELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF------ATTALEVVILKMLHAFEVPFL-LVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            34556677788889999999999888877766665544332      112222222223222222111 12233356788


Q ss_pred             CCcccccccc
Q psy7008          90 FPLRSVFRYH   99 (101)
Q Consensus        90 ~p~~~R~~~~   99 (101)
                      .|++.|+++.
T Consensus       336 ~~~~~~at~~  345 (396)
T TIGR00882       336 FDVRLSATIY  345 (396)
T ss_pred             CCcceEEEee
Confidence            8888887754

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.49  E-value=0.00066  Score=46.44  Aligned_cols=26  Identities=4%  Similarity=-0.069  Sum_probs=21.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKR   31 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr   31 (101)
                      ...+..+...++.++.+++.||++||
T Consensus       293 ~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        293 IAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            34456677889999999999999865

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.48  E-value=0.0004  Score=46.02  Aligned_cols=84  Identities=14%  Similarity=0.041  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      +..+..++...+.+++.||+|+|+++..+.....+....+...      ...+.......+....++... +....+.++
T Consensus       248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~  320 (382)
T TIGR00902       248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI------EAFPLIFLLQILHCGTFAVCH-LAAMRYIAA  320 (382)
T ss_pred             HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH------hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            4556777888888999999999999998888888777665432      222334444455555555443 334445677


Q ss_pred             cCCccccccccc
Q psy7008          89 VFPLRSVFRYHD  100 (101)
Q Consensus        89 l~p~~~R~~~~~  100 (101)
                      . |++.|+++++
T Consensus       321 ~-~~~~~~~~q~  331 (382)
T TIGR00902       321 Q-PGSEIAKLQA  331 (382)
T ss_pred             C-CHhhHHHHHH
Confidence            7 8888877654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.47  E-value=0.00074  Score=45.42  Aligned_cols=82  Identities=24%  Similarity=0.351  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ..+..+..+++.++.+++.||+|||+.+..+......+........    ..+.+...+...+.....+. ....++.+.
T Consensus       266 ~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~gi~~~~-~~~~~~a~~  340 (428)
T PF13347_consen  266 MLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG----PGSPWLVLILFILAGIGYGA-FFVIPWAML  340 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH----hhhHHHHHHHHHHhHhhhcc-ccccccccc
Confidence            3455677888999999999999999999999888888777766543    12344444444444444433 347788889


Q ss_pred             cccCCcc
Q psy7008          87 SEVFPLR   93 (101)
Q Consensus        87 ~El~p~~   93 (101)
                      +|+.+.+
T Consensus       341 ad~id~~  347 (428)
T PF13347_consen  341 ADVIDYD  347 (428)
T ss_pred             ccchhhH
Confidence            9998844

>KOG3764|consensus

Probab=97.46  E-value=0.00034  Score=47.25  Aligned_cols=85  Identities=13%  Similarity=-0.007  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      ...+.+++.+++.|.+.||+|+|..++.|...+..+..+++..       .++..++.....+...+.........+.++
T Consensus       114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgvgsA~~~tsglamlAd  186 (464)
T KOG3764|consen  114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGVGSAFADTSGLAMLAD  186 (464)
T ss_pred             HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhhhHHHHHhhhHHHHHH
Confidence            4467889999999999999999999999999999888888752       233333334434433333333445567889


Q ss_pred             cCCccc-cccccc
Q psy7008          89 VFPLRS-VFRYHD  100 (101)
Q Consensus        89 l~p~~~-R~~~~~  100 (101)
                      .||.+. |++.+|
T Consensus       187 ~f~~d~er~~vmG  199 (464)
T KOG3764|consen  187 VFPEDNERGSVMG  199 (464)
T ss_pred             HcccchhhhHHHH
Confidence            999776 577654

>KOG2532|consensus

Probab=97.43  E-value=0.0005  Score=47.23  Aligned_cols=87  Identities=14%  Similarity=0.038  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .....+.+++.++++++.||+|-|+++..+.++.++..++.-....    ...+..++...+-....+..+ +....+.+
T Consensus        80 ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~----~~~~~~~~~R~lqGl~~g~~~-pa~~~i~~  154 (466)
T KOG2532|consen   80 SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS----IGFYLLLVLRFLQGLGQGVLF-PAIGSILA  154 (466)
T ss_pred             HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH----hcchhhHHHHHHhHHHHhHHH-hhhhceee
Confidence            4456778899999999999999999999999888888877665442    222333444444444444444 55556788


Q ss_pred             ccCCcccccccc
Q psy7008          88 EVFPLRSVFRYH   99 (101)
Q Consensus        88 El~p~~~R~~~~   99 (101)
                      +-.|++.|++..
T Consensus       155 ~W~P~~Ers~~~  166 (466)
T KOG2532|consen  155 KWAPPNERSTFI  166 (466)
T ss_pred             eECCHHHHHHHH
Confidence            999999998754

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.38  E-value=0.0012  Score=45.37  Aligned_cols=87  Identities=13%  Similarity=-0.024  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF   90 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~   90 (101)
                      .+..+++.++++++.||+|||+.+..+.....+....+.....  .....+.......+.....+.+. +..+.+..|+.
T Consensus       269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~--~~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~  345 (491)
T PRK11010        269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI--TDKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLC  345 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc
Confidence            3567799999999999999988776665555544433322211  01111121222222222222222 22355677888


Q ss_pred             Cccccccccc
Q psy7008          91 PLRSVFRYHD  100 (101)
Q Consensus        91 p~~~R~~~~~  100 (101)
                      |++.+++..+
T Consensus       346 ~~~~~~t~~g  355 (491)
T PRK11010        346 NKSFSATQFA  355 (491)
T ss_pred             CCCCcHHHHH
Confidence            8887776543

>TIGR00897 2A0118 polyol permease family

Probab=97.37  E-value=0.0012  Score=44.01  Aligned_cols=89  Identities=10%  Similarity=0.014  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ....+...++.+..+++.||++||+... .+.....+....+..... ......+.......++....+. ..+.. ...
T Consensus       264 ~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~  340 (402)
T TIGR00897       264 GTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ-HFGHSFAVALIIAIALGIFLAG-YVPLA-AVF  340 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHHH-HHHHH-HHH
Confidence            3455778899999999999999887653 333333333222221110 0011222222233333333222 22333 345


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|..| +.|+++.|
T Consensus       341 ~~~~~-~~~g~~~g  353 (402)
T TIGR00897       341 PTLAP-KHKGAAMS  353 (402)
T ss_pred             HhhCc-chhHHHHH
Confidence            68766 47888765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.33  E-value=0.0014  Score=44.73  Aligned_cols=88  Identities=13%  Similarity=0.100  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      +..+..+++.++.+++.||+|||+.+..+.....++.......... .....+...+...+.....+. ....++.+.+|
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad  351 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-APHNALLIVIAGILLNIGTAL-FWVLQVIMVAD  351 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence            3446778888889999999999999887776655554443322110 011222232323333333332 23556777888


Q ss_pred             cCC-----ccccccc
Q psy7008          89 VFP-----LRSVFRY   98 (101)
Q Consensus        89 l~p-----~~~R~~~   98 (101)
                      ..+     +..|..|
T Consensus       352 ~id~~e~~tG~R~~G  366 (473)
T PRK10429        352 TVDYGEYKLGIRCES  366 (473)
T ss_pred             hhhhhhHhcCccchh
Confidence            854     5555544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.33  E-value=0.0017  Score=43.13  Aligned_cols=39  Identities=13%  Similarity=0.014  Sum_probs=31.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHH
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFS   44 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~   44 (101)
                      ...+..+...++.++.+++.||+|||+.+..+.......
T Consensus        43 ~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882        43 VFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL   81 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            455667888999999999999999999887765554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.31  E-value=0.00057  Score=47.10  Aligned_cols=44  Identities=18%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHh----hcCchHHHHhH-hHHHHHHHHHHH
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIK----RIGKRPLSLIS-IGGTAFSALTCG   49 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d----~~grr~~~~~~-~~~~~~~~~~~~   49 (101)
                      ...+..+..++..++.|++.|    |+|||+.++.+ .....++...+.
T Consensus        44 i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~   92 (477)
T TIGR01301        44 IWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG   92 (477)
T ss_pred             HHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            345566788899999999999    59999987765 444444444443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.24  E-value=0.0012  Score=43.69  Aligned_cols=42  Identities=12%  Similarity=0.070  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC   48 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~   48 (101)
                      .....+...++.++.+++.||+|||+....+.....+.....
T Consensus       241 ~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        241 MMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            345567788999999999999999998887776666655443

>PRK03699 putative transporter; Provisional

Probab=97.23  E-value=0.002  Score=42.79  Aligned_cols=40  Identities=8%  Similarity=-0.032  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHH
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALT   47 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~   47 (101)
                      ....+...++.++.+++.||++||+.+........+....
T Consensus       248 ~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  287 (394)
T PRK03699        248 SNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            3445677899999999999999999887766555554433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.22  E-value=0.0028  Score=43.78  Aligned_cols=77  Identities=21%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008          12 TTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF   90 (101)
Q Consensus        12 ~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~   90 (101)
                      ...-..++++||+.||+ |+|+....+.++..++.+.++...    ........+... .+.......-+.+..+..|++
T Consensus        72 slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~----~~~~~gl~i~L~-~I~iG~Gl~K~NiS~llg~ly  146 (498)
T COG3104          72 SLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS----VSGPGGLYIGLA-LIIVGTGLFKPNISSLLGELY  146 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc----cccccHHHHHHH-HHHhccccccccHHHHHHHhc
Confidence            33456788999999995 999999999999999988877531    011112222222 222223334566666788999


Q ss_pred             Ccc
Q psy7008          91 PLR   93 (101)
Q Consensus        91 p~~   93 (101)
                      |++
T Consensus       147 ~~~  149 (498)
T COG3104         147 PKD  149 (498)
T ss_pred             CCC
Confidence            854

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.18  E-value=0.00044  Score=46.23  Aligned_cols=92  Identities=18%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh----cCch-HHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccc
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKR----IGKR-PLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAI   81 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~----~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (101)
                      ..+..+...+..++.|++.||    +||| +.++.+.....++...+....................++...++.. ...
T Consensus        41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  119 (437)
T TIGR00792        41 FLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFV-NIP  119 (437)
T ss_pred             HHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhh-ccc
Confidence            445557778899999999997    5664 4666776666666555543211000001112222223333333321 222


Q ss_pred             hhhhecccC-Ccccccccc
Q psy7008          82 PWMLLSEVF-PLRSVFRYH   99 (101)
Q Consensus        82 ~~~~~~El~-p~~~R~~~~   99 (101)
                      ...+.+|+. +++.|++..
T Consensus       120 ~~al~~~~~~~~~~R~~~~  138 (437)
T TIGR00792       120 YWSLVPAITLDPRERESLS  138 (437)
T ss_pred             HhhCcccccCCHHHHHHHH
Confidence            345677887 467787654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03545 putative arabinose transporter; Provisional

Probab=97.16  E-value=0.0027  Score=42.10  Aligned_cols=85  Identities=13%  Similarity=0.036  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ....+..+++.++.+++.||.+||..... ..............     ....+.......++.... ...++.......
T Consensus       248 ~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~  320 (390)
T PRK03545        248 LLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPA-----ANSEWHLSVLSIFWGIAI-MCIGLAMQVKVL  320 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHH-----hchHHHHHHHHHHHHHHH-hcchHHHHHHHH
Confidence            44567788999999999999998875443 33333333222111     112222223333333322 222333444566


Q ss_pred             ccCCccccccccc
Q psy7008          88 EVFPLRSVFRYHD  100 (101)
Q Consensus        88 El~p~~~R~~~~~  100 (101)
                      |..| +.|+++.+
T Consensus       321 ~~~~-~~~~~~~g  332 (390)
T PRK03545        321 KLAP-DATDVAMA  332 (390)
T ss_pred             HhCC-CcHHHHHH
Confidence            7776 46776544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.15  E-value=0.003  Score=41.79  Aligned_cols=42  Identities=14%  Similarity=0.006  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHH
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCG   49 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~   49 (101)
                      ....+...++.++.+++.||+|||+....+.....+....+.
T Consensus       246 ~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  287 (392)
T PRK10473        246 ALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA  287 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            445667788899999999999999988888776666555444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.13  E-value=0.0031  Score=42.86  Aligned_cols=87  Identities=22%  Similarity=0.243  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ....+++..+++++.+++.||+|-|+++..+.+...+.+......      ........ ..+....+..+.++.+=.+.
T Consensus       294 g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~------~~~~~f~i-~gll~g~s~G~~qA~SRSy~  366 (438)
T COG2270         294 GIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL------EGELDFWI-LGLLVGTSLGGAQASSRSYL  366 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc------cccHHHHH-HHHHHHHhcchHHHHHHHHH
Confidence            345678889999999999999999998888877766665543322      12222222 22233333334556666678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +++.|++.-++-+|
T Consensus       367 ~~lvp~~k~~~fFg  380 (438)
T COG2270         367 ARLVPKGKEGRFFG  380 (438)
T ss_pred             HHhCCCccccceee
Confidence            99999887766554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.13  E-value=0.0022  Score=42.78  Aligned_cols=43  Identities=7%  Similarity=0.070  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC   48 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~   48 (101)
                      ...+..+...++.++.+++.||.+||+....+.....++...+
T Consensus       245 ~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~  287 (393)
T PRK09705        245 LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF  287 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            3456667889999999999999999998887766665554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.12  E-value=0.0013  Score=45.93  Aligned_cols=89  Identities=18%  Similarity=0.078  Sum_probs=58.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +.....+++.++|+++..++.+|+++++++..+.+..+++...++..      ...+.......+........ .....+
T Consensus       258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~------~~~~~~~~~l~l~G~~~~~~-~~~~~t  330 (524)
T PF05977_consen  258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS------PSFWLALIALFLAGAAWIIA-NSSLNT  330 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            34556678888888888888888988888887777777766655542      23333333333333333322 233445


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      ...+..|.+.|++..+
T Consensus       331 ~~Q~~~P~~~~GRv~s  346 (524)
T PF05977_consen  331 LVQLSVPDWVRGRVFS  346 (524)
T ss_pred             HHHHhCCHHHHhHHHH
Confidence            6789999999998765

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.08  E-value=0.0036  Score=41.92  Aligned_cols=38  Identities=13%  Similarity=-0.017  Sum_probs=29.9

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHH
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAF   43 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~   43 (101)
                      ...+..+...++.++.|++.||+|||+.+..+......
T Consensus        51 ~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~   88 (420)
T PRK09528         51 IFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLV   88 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            44566788889999999999999999988776554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.06  E-value=0.00074  Score=46.12  Aligned_cols=91  Identities=14%  Similarity=0.062  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHh----hcCc-hHHHHhHhHHHHHHHHHHHHHhccCCCC-ccHHHHHHHHHHHHHHhhcccc
Q psy7008           7 QIFVPTTGFIGSIVSMCIIK----RIGK-RPLSLISIGGTAFSALTCGILSYKGTVG-SQILPFIMLLLLAFFTSIGIAA   80 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d----~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~   80 (101)
                      ..+..+...+..++.|++.|    |+|| |+.++.+....+++...+.... +..+. ......+...++...+.... .
T Consensus        48 ~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p-~~~~~~~~~~~~~~~~l~~~~~t~~~-i  125 (473)
T PRK10429         48 FLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAH-LFEGTAQYVFVCVTYILWGMTYTIMD-I  125 (473)
T ss_pred             HHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHHHc-c
Confidence            34455677788888999999    5587 5666777777776655543211 00011 11122333334444443322 2


Q ss_pred             chhhhecccC-Ccccccccc
Q psy7008          81 IPWMLLSEVF-PLRSVFRYH   99 (101)
Q Consensus        81 ~~~~~~~El~-p~~~R~~~~   99 (101)
                      -...+.+|+. +.+.|.+..
T Consensus       126 p~~al~~~lt~~~~eR~~l~  145 (473)
T PRK10429        126 PFWSLVPTLTLDKREREQLV  145 (473)
T ss_pred             hHHhhhHHhCCCHHHHHHHH
Confidence            2345678998 588887654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.05  E-value=0.0051  Score=42.50  Aligned_cols=92  Identities=18%  Similarity=0.219  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCch--HHHHhHhHHHHHHHHHHHHHhc---cCCCCccHHHHHHHHHHHHHHhhccccc
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKR--PLSLISIGGTAFSALTCGILSY---KGTVGSQILPFIMLLLLAFFTSIGIAAI   81 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (101)
                      .++..+...+|+++.+++.||+|.|  +++........+.... +....   .......+...+...++ +.+..+.++.
T Consensus       323 ~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~-g~~G~~~~~~g~~~~~~f~~~a~~~-G~~~G~~qs~  400 (477)
T PF11700_consen  323 GLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY-GLFGFWPSFFGLKSPWEFWVLAVLI-GLFMGGIQSA  400 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HHHHhhhcccCcccHHHHHHHHHHH-HHHhhhHHHH
Confidence            4566788899999999999999988  7776666555332222 12211   00112223333323333 2333345677


Q ss_pred             hhhhecccCCccccccccc
Q psy7008          82 PWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        82 ~~~~~~El~p~~~R~~~~~  100 (101)
                      .-.+.+|+.|+...+.-+|
T Consensus       401 sRs~~~~LiP~g~e~efFg  419 (477)
T PF11700_consen  401 SRSLFSRLIPPGREAEFFG  419 (477)
T ss_pred             HHHHHHHhCCCchhhHHHH
Confidence            7778899999988766544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.03  E-value=0.004  Score=42.04  Aligned_cols=86  Identities=15%  Similarity=0.033  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHH----HHHHHHHhhccccchhh
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIML----LLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~   84 (101)
                      +..+.+++.-...+++.+|+|-|+++..+.....+-..++....     .+.+......    .+....++... .....
T Consensus       251 l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~-----~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~  324 (400)
T PF03825_consen  251 LGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS-----DPWPFIVALQLLGQLLHGLTFGLFH-AASVR  324 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHhhhhHHHHHHH-HHHHH
Confidence            33456677778888999999999999999988887777665431     1222222222    23455554433 33445


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      |..|..|++.|+++++
T Consensus       325 yi~~~~p~~~~at~Q~  340 (400)
T PF03825_consen  325 YIDRIAPPELRATAQG  340 (400)
T ss_pred             HHHHhCCccchHHHHH
Confidence            7899999999999886

>PRK09669 putative symporter YagG; Provisional

Probab=97.02  E-value=0.0056  Score=41.44  Aligned_cols=76  Identities=14%  Similarity=0.258  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF   90 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~   90 (101)
                      .+..+++.++.+++.||+|||+.+..+.....+.........    ....+...+...+.....+ ...+.++.+.+|..
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~  348 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP----PSNVWLIFALNILFNFIQN-LTTPLQWSMFSDVV  348 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence            355567778888999999999988877655443332222111    1122223333333333333 23466788888888


Q ss_pred             C
Q psy7008          91 P   91 (101)
Q Consensus        91 p   91 (101)
                      +
T Consensus       349 d  349 (444)
T PRK09669        349 D  349 (444)
T ss_pred             h
Confidence            6

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.012  Score=40.55  Aligned_cols=76  Identities=25%  Similarity=0.365  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF   90 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~   90 (101)
                      ....+++.++...+.+|+|+|+.+..+.+...++...+....    .+.....++..++.....+. ..+.+|.+.+|..
T Consensus       282 ~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~----~~~~~l~~~~~~i~~~g~~~-~~~l~wam~~d~v  356 (467)
T COG2211         282 GAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP----AGSVVLIVVALIIAGVGTGI-ANPLPWAMVADTV  356 (467)
T ss_pred             HHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----CcchHHHHHHHHHHHHHhhc-cccccHHHhcchh
Confidence            344555578888999999999999999888888877766542    22333344443444444443 3588999999876


Q ss_pred             C
Q psy7008          91 P   91 (101)
Q Consensus        91 p   91 (101)
                      .
T Consensus       357 D  357 (467)
T COG2211         357 D  357 (467)
T ss_pred             h
Confidence            4

>TIGR00896 CynX cyanate transporter

Probab=96.91  E-value=0.0038  Score=40.78  Aligned_cols=44  Identities=5%  Similarity=-0.026  Sum_probs=31.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHH
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCG   49 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~   49 (101)
                      ......+..+++.++.+++.||+ +||+....+.....++...+.
T Consensus       237 ~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T TIGR00896       237 LLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL  281 (355)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence            34456678889999999999999 566666666666555554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.88  E-value=0.0054  Score=40.64  Aligned_cols=41  Identities=17%  Similarity=0.016  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHH
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCG   49 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~   49 (101)
                      +..+...+...+.+++.||+++|+.+..+.....+......
T Consensus       248 ~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~  288 (382)
T PRK11128        248 LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG  288 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence            34466777778889999999999998888777776655443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.85  E-value=0.007  Score=40.05  Aligned_cols=38  Identities=11%  Similarity=0.213  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHH
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSAL   46 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~   46 (101)
                      ...+...++....+++.||++||+.+..+.....++..
T Consensus       243 ~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~  280 (381)
T PRK03633        243 LLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI  280 (381)
T ss_pred             HHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            44567788899999999999999988777666655544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.80  E-value=0.0064  Score=41.23  Aligned_cols=86  Identities=22%  Similarity=0.383  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      .....+.+.=+.+|++.||+|.++.+......+.++......... ..+..........+.......+.+.+++ +-+.+
T Consensus       262 ~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip  340 (417)
T COG2223         262 LFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIP  340 (417)
T ss_pred             HHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh-eeech
Confidence            344455555667899999999888888877777777776654332 1122333444443333344445555443 33466


Q ss_pred             ccCCcccc
Q psy7008          88 EVFPLRSV   95 (101)
Q Consensus        88 El~p~~~R   95 (101)
                      .+||.+..
T Consensus       341 ~if~~~~G  348 (417)
T COG2223         341 VIFPKETG  348 (417)
T ss_pred             HHHHhhhh
Confidence            66666443

>PRK09669 putative symporter YagG; Provisional

Probab=96.80  E-value=0.00073  Score=45.67  Aligned_cols=92  Identities=15%  Similarity=0.110  Sum_probs=49.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhh----cCc-hHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhcccc
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKR----IGK-RPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAA   80 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~----~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (101)
                      ...+..+...+..++.|++.||    +|| |+.++.+....+++....................+...++...+.. ...
T Consensus        50 i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~-~~i  128 (444)
T PRK09669         50 MFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTA-INV  128 (444)
T ss_pred             HHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHh-hcc
Confidence            3445556777888889999998    666 4566667666666655433221000011122333333344434433 223


Q ss_pred             chhhhecccC-Cccccccc
Q psy7008          81 IPWMLLSEVF-PLRSVFRY   98 (101)
Q Consensus        81 ~~~~~~~El~-p~~~R~~~   98 (101)
                      ....+.+|+. +++.|.+.
T Consensus       129 p~~al~~~~t~~~~eR~~l  147 (444)
T PRK09669        129 PYCAMPGAITNDPRERHSL  147 (444)
T ss_pred             hHHHhHHHhcCCHHHHHHH
Confidence            3345678988 45667653

>PRK10133 L-fucose transporter; Provisional

Probab=96.67  E-value=0.017  Score=39.35  Aligned_cols=78  Identities=17%  Similarity=0.076  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhec
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLS   87 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   87 (101)
                      ....+...++.++++++.||+|||+.+..+..+.......... .    . .. .......+...+.+..+ |..+....
T Consensus       302 ~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-~----~-~~-~~~~~~~l~glg~~~i~-P~~~s~a~  373 (438)
T PRK10133        302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-A----G-GH-VGLIALTLCSAFMSIQY-PTIFSLGI  373 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-c----C-Ch-HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            4556777899999999999999999887776665544433222 1    1 11 12222333333333322 44555566


Q ss_pred             ccCCcc
Q psy7008          88 EVFPLR   93 (101)
Q Consensus        88 El~p~~   93 (101)
                      |.+|++
T Consensus       374 ~~~~~~  379 (438)
T PRK10133        374 KNLGQD  379 (438)
T ss_pred             cccchh
Confidence            777654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.64  E-value=0.017  Score=38.31  Aligned_cols=29  Identities=17%  Similarity=0.276  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHhhcCchHHHHhHhHHH
Q psy7008          13 TGFIGSIVSMCIIKRIGKRPLSLISIGGT   41 (101)
Q Consensus        13 ~~~~~~~~~~~l~d~~grr~~~~~~~~~~   41 (101)
                      ..+++.++.+++.||+|+|+.+..+....
T Consensus       256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       256 TVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45667888999999999999887766555

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10054 putative transporter; Provisional

Probab=96.64  E-value=0.0065  Score=40.62  Aligned_cols=80  Identities=13%  Similarity=-0.043  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCccc
Q psy7008          15 FIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPLRS   94 (101)
Q Consensus        15 ~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~~~   94 (101)
                      .......+++.||.+||+.+..+.....+....+...     ....+........+..... ...+.......|..|++.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~  331 (395)
T PRK10054        258 VSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-----GNSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGM  331 (395)
T ss_pred             eeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-----chHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCccc
Confidence            3444566788999999998877776666555444321     1111222222333333322 223444556789999999


Q ss_pred             cccccc
Q psy7008          95 VFRYHD  100 (101)
Q Consensus        95 R~~~~~  100 (101)
                      |++..+
T Consensus       332 ~~~~~~  337 (395)
T PRK10054        332 KASYFS  337 (395)
T ss_pred             ceehHh
Confidence            887643

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.63  E-value=0.016  Score=38.71  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHH
Q psy7008          13 TGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTC   48 (101)
Q Consensus        13 ~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~   48 (101)
                      ...++.++.+++.||+|||+.+..+.....+....+
T Consensus       258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~  293 (402)
T PRK11902        258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGY  293 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999988776666655554433

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.62  E-value=0.0072  Score=31.50  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIG   39 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~   39 (101)
                      ....+.....++++++.++++||.+|++..+....
T Consensus        39 il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   39 ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            34556678889999999999999998887665543

>KOG2504|consensus

Probab=96.62  E-value=0.0083  Score=41.82  Aligned_cols=88  Identities=8%  Similarity=-0.028  Sum_probs=53.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHH-HHHHHHHHhhccccchh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIM-LLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~   83 (101)
                      |...+...+.....++.+.+.||+|.|...+.|.++...+..+.....      ..|..... -.+...+++..+.+...
T Consensus        85 ~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~------~i~~l~lt~gvi~G~G~~~~~~paiv  158 (509)
T KOG2504|consen   85 WIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT------SLWQLYLTFGVIGGLGLGLIYLPAVV  158 (509)
T ss_pred             HHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHhhccchhhhcchhh
Confidence            344555666777888999999999999999999998888887765532      22222221 22222333333344433


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      + ++ .+-.|.|+.++|
T Consensus       159 i-v~-~YF~kkR~lA~G  173 (509)
T KOG2504|consen  159 I-LG-TYFEKKRALATG  173 (509)
T ss_pred             h-hh-hHhHHHHHHHHh
Confidence            3 33 455666777665

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.61  E-value=0.018  Score=38.37  Aligned_cols=40  Identities=13%  Similarity=0.051  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHH
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI   50 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~   50 (101)
                      .....++.++.+++.||++||+....+.....++......
T Consensus       261 ~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        261 FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999888877666655555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.60  E-value=0.018  Score=39.90  Aligned_cols=86  Identities=10%  Similarity=-0.045  Sum_probs=50.4

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHH-hHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSL-ISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +.+.+..+...+..++.|-++|+-++||.++ .......++...+....    ....+...++..+-...+..+. ....
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~----~~~~~~~~~l~iia~v~~~~~~-vfyn  148 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS----PGQWWLALVLFIIANVGYEASN-VFYN  148 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            3455666777778888888999988666444 44455555555554432    2222344444444444444432 4455


Q ss_pred             hhecccCCcccc
Q psy7008          84 MLLSEVFPLRSV   95 (101)
Q Consensus        84 ~~~~El~p~~~R   95 (101)
                      .+.+|+.+.+.+
T Consensus       149 a~LP~la~~~~~  160 (477)
T PF11700_consen  149 AYLPDLARPEPR  160 (477)
T ss_pred             HHhHhhcCCChh
Confidence            678888887766

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11043 putative transporter; Provisional

Probab=96.58  E-value=0.021  Score=37.93  Aligned_cols=35  Identities=14%  Similarity=0.054  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHH
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSA   45 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~   45 (101)
                      .+...++.+..+++.||++||+...........+.
T Consensus       248 ~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~  282 (401)
T PRK11043        248 TIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSV  282 (401)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            45566778888899999998886655544444433

>KOG4686|consensus

Probab=96.56  E-value=0.0099  Score=39.21  Aligned_cols=87  Identities=16%  Similarity=0.023  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      ......+..+.+++.+.+.||+||+..++.+.....+.....-..    +...+|..+....+   .++. ..+..|..+
T Consensus       306 ~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F----t~lsPy~~m~~lGL---sysl-lAcslWP~v  377 (459)
T KOG4686|consen  306 LSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF----TFLSPYTSMTFLGL---SYSL-LACSLWPCV  377 (459)
T ss_pred             hhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh----hhccHHHHHHHHhh---hHHH-HHHHHhhhh
Confidence            344556677888889999999999988777665554444332221    14455555444443   2222 123456667


Q ss_pred             cccCCcccccccccC
Q psy7008          87 SEVFPLRSVFRYHDY  101 (101)
Q Consensus        87 ~El~p~~~R~~~~~~  101 (101)
                      +-+.|.+.-+++.|+
T Consensus       378 a~~vpE~qLGTaygf  392 (459)
T KOG4686|consen  378 ASLVPEEQLGTAYGF  392 (459)
T ss_pred             hhhCCHHHhcchHHH
Confidence            778888877777653

>PRK11462 putative transporter; Provisional

Probab=96.54  E-value=0.013  Score=40.09  Aligned_cols=34  Identities=15%  Similarity=-0.027  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHH
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTA   42 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~   42 (101)
                      +..+..+++.++++++.||+++|+....+.....
T Consensus       271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~  304 (460)
T PRK11462        271 TYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLA  304 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            4456677888899999999999988765544333

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.54  E-value=0.021  Score=38.05  Aligned_cols=32  Identities=6%  Similarity=0.010  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHhhcCchHHHH-hHhHHHHHHHH
Q psy7008          14 GFIGSIVSMCIIKRIGKRPLSL-ISIGGTAFSAL   46 (101)
Q Consensus        14 ~~~~~~~~~~l~d~~grr~~~~-~~~~~~~~~~~   46 (101)
                      ...+.+.+++ .||+|||+.++ .+.....+...
T Consensus        65 ~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         65 ILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            3445555566 99999987654 44444334333

>KOG2563|consensus

Probab=96.48  E-value=0.025  Score=38.99  Aligned_cols=94  Identities=15%  Similarity=-0.027  Sum_probs=58.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccH--HHHHHHHHHHHHHhhccccch
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQI--LPFIMLLLLAFFTSIGIAAIP   82 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~   82 (101)
                      |.++++.+++++..+.+.|+.||.|-|...+.+....++++.+=.....+......+  .....-.+-.... ...-..|
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq-~Fim~lP  161 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQ-PFILGLP  161 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhh-hHhhccc
Confidence            678889999999999999999999999999999998888887655443321111111  2222111111111 1111223


Q ss_pred             hhhecccCCcccccccc
Q psy7008          83 WMLLSEVFPLRSVFRYH   99 (101)
Q Consensus        83 ~~~~~El~p~~~R~~~~   99 (101)
                      .-..+--||++.|+.+.
T Consensus       162 skiA~~WF~~~qra~A~  178 (480)
T KOG2563|consen  162 SKIAAVWFPPDQRAIAT  178 (480)
T ss_pred             cHHHHhhCCcchhhhhh
Confidence            33455668888888765

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.46  E-value=0.011  Score=40.32  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc--CchHHHHhH--hHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRI--GKRPLSLIS--IGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~--grr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      .+.++..+++.++.+++.||.  ++|+....+  ....+........      ....+.......++....+ ...+..+
T Consensus       283 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~------~~~~~~~~i~~~~~G~~~g-~~~~~~~  355 (455)
T TIGR00892       283 SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL------AGDYTGLVIYCIFFGLSFG-SVGALLF  355 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH------hchHHHHHHHHHHHHHHhc-hHHHHHH
Confidence            345566677778889999973  334333222  2222222222211      1122222232333333322 2234455


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      ....|.+|.+.|+++.+
T Consensus       356 ~~~~~~~~~~~~g~~~g  372 (455)
T TIGR00892       356 EVLMDLVGAQRFSSAVG  372 (455)
T ss_pred             HHHHHHhhHHHHhhHHh
Confidence            66789999999888765

>TIGR00889 2A0110 nucleoside transporter

Probab=96.40  E-value=0.034  Score=37.59  Aligned_cols=44  Identities=7%  Similarity=-0.112  Sum_probs=31.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCc-hHHHHhHhHHHHHHHHHH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGK-RPLSLISIGGTAFSALTC   48 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~gr-r~~~~~~~~~~~~~~~~~   48 (101)
                      +......+..++++++.+.+.||+|| |+.+..+.....+.....
T Consensus        42 l~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889        42 WVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            34556678889999999999999965 667776666665554443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.40  E-value=0.014  Score=44.01  Aligned_cols=94  Identities=12%  Similarity=-0.119  Sum_probs=52.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc---c-----------CCCCccHHHHHHHHHHH
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY---K-----------GTVGSQILPFIMLLLLA   71 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~l~~   71 (101)
                      ......++.+++.++.+++.|+..+++.+..+..+..+....+.....   .           ......+...+...++.
T Consensus       266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA  345 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence            345556777889999999998777666555555444444433332100   0           00022233333333333


Q ss_pred             HHHhhccccchhhhecccCCccccccccc
Q psy7008          72 FFTSIGIAAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        72 ~~~~~~~~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      .+.+. ..+....+..|..|.+.|++..|
T Consensus       346 ~~~~~-~~~~~~~~~~~~~p~~~~G~v~g  373 (1140)
T PRK06814        346 AAGGL-YIVPLFAALQAWANPAHRARVIA  373 (1140)
T ss_pred             HHHHH-hHHHHHHHHHhhCCcccceeeeH
Confidence            33222 22345567889999999998876

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.38  E-value=0.043  Score=38.08  Aligned_cols=91  Identities=18%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCc-hHHHHhHhHHHHHHHHHHHHHhc-cCC--------------CCccHHHHHHHHHH
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGK-RPLSLISIGGTAFSALTCGILSY-KGT--------------VGSQILPFIMLLLL   70 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~l~   70 (101)
                      ..+..+...+.+++-.++.+|+|+ |.....+.++.+++......... +++              ....+..+..+...
T Consensus       311 l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (477)
T TIGR01301       311 LMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAIL  390 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHh
Confidence            344556666777777888999985 66767777776666665543321 000              00024555555555


Q ss_pred             HHHHhhccccchhhhecccCCccccccc
Q psy7008          71 AFFTSIGIAAIPWMLLSEVFPLRSVFRY   98 (101)
Q Consensus        71 ~~~~~~~~~~~~~~~~~El~p~~~R~~~   98 (101)
                      .+.++.. .++|+.+.+|..|++.|+.|
T Consensus       391 Gi~~A~~-~siPfal~s~~~~~~~~~~G  417 (477)
T TIGR01301       391 GIPLAIT-YSIPFALASIRSSNLGAGQG  417 (477)
T ss_pred             hHHHHHH-HHHhHHHHHHHccccCCCCc
Confidence            5555543 48899999999997666544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.36  E-value=0.018  Score=39.86  Aligned_cols=93  Identities=14%  Similarity=-0.028  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHH----HHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c-CCC-CccHHHHHHHHHHHHHHhhccc
Q psy7008           7 QIFVPTTGFIGSIVSM----CIIKRIGKRPLSLISIGGTAFSALTCGILSY-K-GTV-GSQILPFIMLLLLAFFTSIGIA   79 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~----~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~l~~~~~~~~~~   79 (101)
                      +.+..+...+..++..    ++.||.+.++.+..+.++.+++...+..... . ++. ...++.+....+...+ .....
T Consensus       322 ~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~g-e~~~~  400 (500)
T PRK09584        322 QALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIG-ELMIS  400 (500)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHH-HHHHh
Confidence            3344444445545543    4444444446677777777777766554332 1 111 1223333333333322 33345


Q ss_pred             cchhhhecccCCccccccccc
Q psy7008          80 AIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        80 ~~~~~~~~El~p~~~R~~~~~  100 (101)
                      |....+..+..|++.|++.+|
T Consensus       401 p~g~s~~~~~aP~~~rg~~~g  421 (500)
T PRK09584        401 GLGLAMVAQLVPQRLMGFIMG  421 (500)
T ss_pred             HHHHHHHHHhCcHHHHHHHHH
Confidence            666677889999999998875

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=96.34  E-value=0.042  Score=36.83  Aligned_cols=80  Identities=13%  Similarity=0.019  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHH-hhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCCc
Q psy7008          14 GFIGSIVSMCII-KRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFPL   92 (101)
Q Consensus        14 ~~~~~~~~~~l~-d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p~   92 (101)
                      ........++.. ||.+.|+.+..+.....+...++...      ...+.......++...... ..+....+..|..|+
T Consensus       256 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~  328 (400)
T PRK11646        256 SLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV------SNLQQLFTLICLFYIGSII-AEPARETLSASLADA  328 (400)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCc
Confidence            333333334444 45665655556655555555444321      1122222222233332222 224445678899999


Q ss_pred             cccccccc
Q psy7008          93 RSVFRYHD  100 (101)
Q Consensus        93 ~~R~~~~~  100 (101)
                      +.|++..+
T Consensus       329 ~~~g~~~g  336 (400)
T PRK11646        329 RARGSYMG  336 (400)
T ss_pred             ccchhhhh
Confidence            99998765

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.30  E-value=0.025  Score=38.16  Aligned_cols=77  Identities=10%  Similarity=0.043  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008          12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP   91 (101)
Q Consensus        12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p   91 (101)
                      ....+|-++++++.||+++|+.+........+.........      . ........+...+.+..+ |..+....|..+
T Consensus       280 ~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~------~-~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g  351 (410)
T TIGR00885       280 VIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG------G-HVGLYCLTLCSAFMSLMF-PTIYGIALKGLG  351 (410)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC------C-hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh
Confidence            44578889999999999999988777766666655544311      1 122233333334444444 666667778888


Q ss_pred             ccccc
Q psy7008          92 LRSVF   96 (101)
Q Consensus        92 ~~~R~   96 (101)
                      ++.+.
T Consensus       352 ~~~~~  356 (410)
T TIGR00885       352 QDTKY  356 (410)
T ss_pred             hhhhh
Confidence            77654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09848 glucuronide transporter; Provisional

Probab=96.26  E-value=0.032  Score=37.80  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccCC
Q psy7008          12 TTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVFP   91 (101)
Q Consensus        12 ~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~p   91 (101)
                      +..+++.++.+++.||+|+|+.+..+..+..++...+....    ....+.......+...+.+.. .+..+...+|..|
T Consensus       275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~  349 (448)
T PRK09848        275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS----VWSLPVALVALAIASIGQGVT-MTVMWALEADTVE  349 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC----chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence            44567788889999999999999888877666655443211    112222222222233332222 3445666777776


Q ss_pred             cc
Q psy7008          92 LR   93 (101)
Q Consensus        92 ~~   93 (101)
                      .+
T Consensus       350 ~~  351 (448)
T PRK09848        350 YG  351 (448)
T ss_pred             hh
Confidence            43

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.23  E-value=0.035  Score=32.86  Aligned_cols=86  Identities=12%  Similarity=0.035  Sum_probs=52.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ...+......+.+++.+.+.+++|.|+.+..+.+...+.......       ...+.......+.....+.-|. ..-.+
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~-------~~~~~l~~~s~l~G~~~a~lW~-aqg~y  113 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY-------PNSYTLYPASALLGFGAALLWT-AQGTY  113 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHhhhhHHhhH-hhhHH
Confidence            455666777888899999999999999998888776544333221       2233333333333334343342 22335


Q ss_pred             ecccCCcccccccc
Q psy7008          86 LSEVFPLRSVFRYH   99 (101)
Q Consensus        86 ~~El~p~~~R~~~~   99 (101)
                      ..|..+++.|++-.
T Consensus       114 lt~~s~~~~~~~~~  127 (156)
T PF05978_consen  114 LTSYSTEETIGRNT  127 (156)
T ss_pred             HHHcCCHHHHhhHH
Confidence            66777777776644

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.15  E-value=0.02  Score=39.59  Aligned_cols=93  Identities=13%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHH-------HHhHhHHHHHHHHHHHHHh--c-cCCCC-ccHHHHHHHHHHHHHHh
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPL-------SLISIGGTAFSALTCGILS--Y-KGTVG-SQILPFIMLLLLAFFTS   75 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~--~-~~~~~-~~~~~~~~~~l~~~~~~   75 (101)
                      +.+..+..++.+++.+++.||.+||+.       +..|.++.+++........  . +.+.. ..++.+....+...+..
T Consensus       315 ~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~  394 (489)
T PRK10207        315 QALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGEL  394 (489)
T ss_pred             HhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            334445566777778899999998863       5566666666654332111  1 11111 22333333333333332


Q ss_pred             hccccchhhhecccCCccccccccc
Q psy7008          76 IGIAAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        76 ~~~~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      . ..+....+..+..|++.++.+++
T Consensus       395 ~-~~~~g~~~~~~~aP~~~~g~~~g  418 (489)
T PRK10207        395 F-ISALGLAMIAALVPQHLMGFILG  418 (489)
T ss_pred             H-HhHHHHHHHHHhChHHHHHHHHH
Confidence            2 23445566778899999887765

>TIGR01272 gluP glucose/galactose transporter

Probab=96.09  E-value=0.05  Score=35.40  Aligned_cols=39  Identities=5%  Similarity=0.107  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHH
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSAL   46 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~   46 (101)
                      ........++.+++.++.||+++|+.+..+.....+...
T Consensus       185 s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~  223 (310)
T TIGR01272       185 AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI  223 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            445566778999999999999988888777666665543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.06  E-value=0.039  Score=37.40  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=35.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI   50 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~   50 (101)
                      +.-..+++..++|+.+++++.|| +.|+.+.............+..
T Consensus       251 ~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~  295 (394)
T COG2814         251 LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH
Confidence            44567788999999999999999 8888777776666666665544

>PRK11462 putative transporter; Provisional

Probab=96.03  E-value=0.015  Score=39.84  Aligned_cols=93  Identities=13%  Similarity=0.009  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh----cCch-HHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccc
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKR----IGKR-PLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAI   81 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~----~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   81 (101)
                      ..+..+...+..++.|.++||    +||| +.++.+.+..+++...+................+...++...+.... .-
T Consensus        51 ~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~-ip  129 (460)
T PRK11462         51 FLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVN-IP  129 (460)
T ss_pred             HHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHh-cc
Confidence            344556677888999999996    5765 56666767777766554432110011112223344444444444332 22


Q ss_pred             hhhhecccCC-ccccccccc
Q psy7008          82 PWMLLSEVFP-LRSVFRYHD  100 (101)
Q Consensus        82 ~~~~~~El~p-~~~R~~~~~  100 (101)
                      .+.+.+|+.+ .+.|.+..+
T Consensus       130 y~al~~~lt~d~~eRt~l~s  149 (460)
T PRK11462        130 YCALGGVITNDPTQRISLQS  149 (460)
T ss_pred             HHHHHHHhcCCHHHHHHHHH
Confidence            3457889888 777776543

>KOG0253|consensus

Probab=95.91  E-value=0.01  Score=40.41  Aligned_cols=84  Identities=14%  Similarity=0.077  Sum_probs=52.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .+........+++..-+...|++|||+.+.......+....+-+.      ..+-...+++..+..  ++.+..|....+
T Consensus       118 lt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~------spnf~~L~~f~~l~~--~g~gg~pv~~~~  189 (528)
T KOG0253|consen  118 LTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA------SPNFASLCVFRALWG--FGVGGLPVDSAI  189 (528)
T ss_pred             HHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC------CCCeehhhHHHHHHh--ccCCCccHhHHH
Confidence            444555666788888888999999999887777666555544322      223233334444433  344434555555


Q ss_pred             ecccCCcccccc
Q psy7008          86 LSEVFPLRSVFR   97 (101)
Q Consensus        86 ~~El~p~~~R~~   97 (101)
                      -.|..|...|.+
T Consensus       190 yle~lp~~~r~~  201 (528)
T KOG0253|consen  190 YLEFLPSSHRWL  201 (528)
T ss_pred             HHHhccCcCCCc
Confidence            679999988875

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.87  E-value=0.044  Score=37.38  Aligned_cols=86  Identities=16%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .+.+.-+.+.+.-.+..++.+|+|.|+.++.+..+..+-....+..      ...+.....-.+...-+.... ....-|
T Consensus       264 l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~------~~~~~i~~~klLH~~e~~l~l-va~fkY  336 (412)
T PF01306_consen  264 LWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA------TNPWVISLIKLLHALEFPLLL-VAAFKY  336 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--------SHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh------cchHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3455567778888888999999999999999888887776665542      234444444444444443332 223346


Q ss_pred             ecccCCccccccc
Q psy7008          86 LSEVFPLRSVFRY   98 (101)
Q Consensus        86 ~~El~p~~~R~~~   98 (101)
                      .++.+|+|..++.
T Consensus       337 I~~~fd~rlsAt~  349 (412)
T PF01306_consen  337 ITAHFDKRLSATL  349 (412)
T ss_dssp             HHHHS-GGGHHHH
T ss_pred             HHHhCCHhHHHHH
Confidence            7899999987654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.85  E-value=0.05  Score=37.04  Aligned_cols=82  Identities=17%  Similarity=0.106  Sum_probs=54.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhcc-ccchhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGI-AAIPWM   84 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~   84 (101)
                      .........+..++..+++.+|+|+|.-++.+..+..+++.++.-..     .......+...++....+.+. .+....
T Consensus        53 iqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-----~~~~y~~FL~~lFila~Gi~~LetaaNp  127 (422)
T COG0738          53 IQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-----SSKSYGFFLVALFILASGIGLLETAANP  127 (422)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHHhhhHHHHhccch
Confidence            44556677889999999999999999999999999999988875322     122233344444444444432 333444


Q ss_pred             hecccCCc
Q psy7008          85 LLSEVFPL   92 (101)
Q Consensus        85 ~~~El~p~   92 (101)
                      +.+.+.|+
T Consensus       128 ~v~~lg~~  135 (422)
T COG0738         128 YVTLLGKP  135 (422)
T ss_pred             HHHHhCCc
Confidence            56666665

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.79  E-value=0.054  Score=37.79  Aligned_cols=97  Identities=8%  Similarity=-0.052  Sum_probs=56.4

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCc--hH----H-HHhHhHHHHHHHHHHHHHhc--cCCCCccHHHHHHHHHHHHHH
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGK--RP----L-SLISIGGTAFSALTCGILSY--KGTVGSQILPFIMLLLLAFFT   74 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~gr--r~----~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~   74 (101)
                      .+.+.+..+..++.+++..++=.|.+|  |.    . +..+.++.+++...+.....  +++...+...++...+.....
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            455667777777777776666555532  21    1 45566666666655543322  122222222233333333344


Q ss_pred             hhccccchhhhecccCCccccccccc
Q psy7008          75 SIGIAAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        75 ~~~~~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      .....|+.....+++.|++.|+..+|
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg  416 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTG  416 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHH
Confidence            55567888888999999999998765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.78  E-value=0.054  Score=36.25  Aligned_cols=33  Identities=12%  Similarity=-0.041  Sum_probs=24.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISI   38 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~   38 (101)
                      ......+..+++++..+++.||.++|+....+.
T Consensus       246 ~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        246 LQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            344555677888888899999888887766654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.71  E-value=0.002  Score=43.39  Aligned_cols=91  Identities=15%  Similarity=0.040  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHh----hcCchH-HHHhHhHHHHHHHHHHHHH-hccCCC-CccHHHHHHHHHHHHHHhhcccc
Q psy7008           8 IFVPTTGFIGSIVSMCIIK----RIGKRP-LSLISIGGTAFSALTCGIL-SYKGTV-GSQILPFIMLLLLAFFTSIGIAA   80 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d----~~grr~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~   80 (101)
                      .+..+...+..++.|.+.|    |+|||+ .++.+.....++..++... ..+.+. .......+...++...++.. ..
T Consensus        44 ~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~-~i  122 (428)
T PF13347_consen   44 LVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFV-QI  122 (428)
T ss_pred             HHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhc-cC
Confidence            3444556666678888899    788665 5566777777777666543 110011 11122244444444444443 23


Q ss_pred             chhhhecccCC-cccccccc
Q psy7008          81 IPWMLLSEVFP-LRSVFRYH   99 (101)
Q Consensus        81 ~~~~~~~El~p-~~~R~~~~   99 (101)
                      ....+.+|+.+ ++.|.+..
T Consensus       123 ~~~al~~~lt~~~~~R~~l~  142 (428)
T PF13347_consen  123 PYNALIPELTPDPDERTRLS  142 (428)
T ss_pred             chhhcCccccccHhhhhhHH
Confidence            34567889998 46777654

>KOG2533|consensus

Probab=95.64  E-value=0.11  Score=36.31  Aligned_cols=90  Identities=13%  Similarity=-0.086  Sum_probs=57.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +..+.+..+...++.++++.+.||++-++.+....+..++..+.....      .+.+..++...+...+-+.++ |...
T Consensus        84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~------~s~~~~ialr~llGl~es~~w-P~~~  156 (495)
T KOG2533|consen   84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV------HSFPGLIALRFLLGLFESGGW-PGVV  156 (495)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHhcccc-hHHH
Confidence            456778889999999999999999995555554444444444333221      122334444444444444445 5555


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                      .+.+.-|..+.|++-++
T Consensus       157 ~~lg~wy~~~e~g~r~~  173 (495)
T KOG2533|consen  157 AILGNWYGKSERGLRMG  173 (495)
T ss_pred             HHHHhhcChhhhhhhHH
Confidence            66888888888887654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.62  E-value=0.041  Score=33.95  Aligned_cols=86  Identities=22%  Similarity=0.142  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+....+.++.+.+.||.|||+....+...............    ....+............ .....+....+.
T Consensus        45 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~  119 (338)
T COG0477          45 LSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP----NVGLALLLILRLLQGLG-GGGLLPVASALL  119 (338)
T ss_pred             HHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc----cchHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence            3344555666678899999999999777766654233322222111    11112222222221111 112335556678


Q ss_pred             cccCCc-ccccc
Q psy7008          87 SEVFPL-RSVFR   97 (101)
Q Consensus        87 ~El~p~-~~R~~   97 (101)
                      +|.+|. +.|+.
T Consensus       120 ~~~~~~~~~~~~  131 (338)
T COG0477         120 SEWFPEATERGL  131 (338)
T ss_pred             HHhcCchhHHHH
Confidence            888887 44443

>KOG1330|consensus

Probab=95.56  E-value=0.034  Score=38.51  Aligned_cols=92  Identities=17%  Similarity=0.018  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc----CchHHHHhHhHHHHHHHHHHHH---HhccCCCCccHHHHHHHHHHHHHHhhcccc
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRI----GKRPLSLISIGGTAFSALTCGI---LSYKGTVGSQILPFIMLLLLAFFTSIGIAA   80 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~----grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   80 (101)
                      .+...++.+|.++++.+.||+    .|-.......+....+......   ...+......+..++++.+.......++++
T Consensus       290 ~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~  369 (493)
T KOG1330|consen  290 GVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWAT  369 (493)
T ss_pred             hHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccccc
Confidence            344566788888888899883    2212222222222222221111   111111223333444444444444444544


Q ss_pred             chhhhecccCCccccccccc
Q psy7008          81 IPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        81 ~~~~~~~El~p~~~R~~~~~  100 (101)
                      ... ...|..|++.|+++.+
T Consensus       370 n~~-i~l~vV~p~~Rt~a~a  388 (493)
T KOG1330|consen  370 NNP-IFLEVVPPSRRTTAYA  388 (493)
T ss_pred             ccc-eeeEecCcccccHHHH
Confidence            444 4679999999998764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.48  E-value=0.14  Score=33.92  Aligned_cols=25  Identities=16%  Similarity=0.054  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKR   31 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr   31 (101)
                      ..+..+...++.++.+.+.||+|||
T Consensus        45 ~~~~~l~~~l~~~~~g~l~dr~g~~   69 (382)
T PRK11128         45 LGAGLVARFLGSLLIAPRVKDPSQL   69 (382)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcch
Confidence            4445566778888899999999984

>KOG3762|consensus

Probab=95.45  E-value=0.017  Score=40.75  Aligned_cols=83  Identities=13%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecccC
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEVF   90 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El~   90 (101)
                      -...++.-+++.++++|+|+-+.+..+..+...-...+..      -++.|..+-+=.+-.+..+..|.+ .-.|.+...
T Consensus       416 ~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~------L~n~W~vLPieilqgit~aliWaa-~~sY~s~va  488 (618)
T KOG3762|consen  416 HAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY------LQNPWMVLPIEILQGITHALIWAA-IISYASHVA  488 (618)
T ss_pred             ccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH------hcCchheeeHHHHHHHHHHHHHHH-HHHHHHhhC
Confidence            3555677778889999999999999988887777665544      345565555555556666665633 334789999


Q ss_pred             Cccccccccc
Q psy7008          91 PLRSVFRYHD  100 (101)
Q Consensus        91 p~~~R~~~~~  100 (101)
                      |++.|+++++
T Consensus       489 Pp~l~at~Q~  498 (618)
T KOG3762|consen  489 PPGLRATAQG  498 (618)
T ss_pred             CCcchHHHHH
Confidence            9999998875

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.43  E-value=0.065  Score=36.94  Aligned_cols=94  Identities=17%  Similarity=0.098  Sum_probs=48.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCc-----hHHH--HhHhHHHHHHHHHHHHHhc--cCCCC-ccHHHHHHHHHHHHHHh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGK-----RPLS--LISIGGTAFSALTCGILSY--KGTVG-SQILPFIMLLLLAFFTS   75 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~gr-----r~~~--~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~   75 (101)
                      ...+..+..++..++..++..|.+|     +...  ..|.++.+++.........  ++... ..++.+....+.... .
T Consensus       317 ~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g-e  395 (475)
T TIGR00924       317 FQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG-E  395 (475)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH-H
Confidence            3444444455554443333333333     3333  5566666666655543211  11112 233333333333333 3


Q ss_pred             hccccchhhhecccCCccccccccc
Q psy7008          76 IGIAAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        76 ~~~~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      ....+..+.+.+|..|++.|++.+|
T Consensus       396 ~~~~p~~~~~~~~~aP~~~~g~~~g  420 (475)
T TIGR00924       396 LMISPLGLSWWTKIAPQRLMGQMLG  420 (475)
T ss_pred             HHHhHHHHHHHHHhCCHHHHHHHHH
Confidence            3345777778899999999998765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2816|consensus

Probab=95.38  E-value=0.03  Score=38.74  Aligned_cols=81  Identities=17%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhheccc
Q psy7008          10 VPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSEV   89 (101)
Q Consensus        10 ~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~El   89 (101)
                      .+...++.+..-|.+.|++|||..+......+.+.........        |+..+...+.. .+.. ..+....+.++.
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--------~~~~~~~~l~g-~~~~-~~s~~~a~vadi  140 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--------YWFFLLLGLSG-GFSA-IFSVGFAYVADI  140 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--------HHHhhhccccc-chhh-hhhhhhhheeec
Confidence            4567788888889999999999999888887776666554321        22222111111 1111 123445678888


Q ss_pred             CCccccccccc
Q psy7008          90 FPLRSVFRYHD  100 (101)
Q Consensus        90 ~p~~~R~~~~~  100 (101)
                      ...+.|....|
T Consensus       141 s~~~~R~~~~g  151 (463)
T KOG2816|consen  141 SSEEERSSSIG  151 (463)
T ss_pred             cchhHHHHHHH
Confidence            88888877654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.37  E-value=0.3  Score=32.79  Aligned_cols=36  Identities=17%  Similarity=0.089  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHH
Q psy7008          11 PTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSAL   46 (101)
Q Consensus        11 ~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~   46 (101)
                      .+...+...+.+.+.||+|||+.-+...+....+++
T Consensus        79 f~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl  114 (354)
T PF05631_consen   79 FASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL  114 (354)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            345566677778899999999977666666665554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=94.95  E-value=0.28  Score=32.60  Aligned_cols=26  Identities=15%  Similarity=0.094  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchHH
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRPL   33 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~~   33 (101)
                      ........++.++.+.+.||.|||..
T Consensus        46 s~~~~~~~~~~~~~g~l~d~~~~~~~   71 (382)
T TIGR00902        46 GAALIARFAGGLFFAPLIKDANHIII   71 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            34456667788888999999998643

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=94.88  E-value=0.22  Score=33.04  Aligned_cols=18  Identities=17%  Similarity=-0.062  Sum_probs=10.5

Q ss_pred             cchhhhecccCCccccccc
Q psy7008          80 AIPWMLLSEVFPLRSVFRY   98 (101)
Q Consensus        80 ~~~~~~~~El~p~~~R~~~   98 (101)
                      +....+..|.+| +.|++.
T Consensus       318 ~~~~~~~~~~~~-~~~g~~  335 (394)
T PRK11652        318 PLATSGAMEPFP-YLAGTA  335 (394)
T ss_pred             HHHHHHHHhhcc-ccchHH
Confidence            444455678887 355554

>PRK09848 glucuronide transporter; Provisional

Probab=94.86  E-value=0.058  Score=36.58  Aligned_cols=42  Identities=10%  Similarity=0.131  Sum_probs=27.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhc----CchH-HHHhHhHHHHHHHHH
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRI----GKRP-LSLISIGGTAFSALT   47 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~----grr~-~~~~~~~~~~~~~~~   47 (101)
                      ...+..+...+..++.|++.||.    |||+ .+..+.+...+....
T Consensus        49 ~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~   95 (448)
T PRK09848         49 MLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVL   95 (448)
T ss_pred             HHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHH
Confidence            34455677788999999999986    6665 445555545444443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.68  E-value=0.22  Score=33.88  Aligned_cols=26  Identities=8%  Similarity=-0.012  Sum_probs=19.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCch
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKR   31 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr   31 (101)
                      ...+..+...++.++++++.||.++|
T Consensus       302 ~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       302 LSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34455677788999999999987644

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.35  E-value=0.38  Score=25.61  Aligned_cols=48  Identities=10%  Similarity=-0.006  Sum_probs=38.4

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGIL   51 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~   51 (101)
                      .+......+.+++|++...++.++.++++.+..+.+...++...++..
T Consensus        30 g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   30 GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778899999999998888777888888888888887777654

Note that many members are hypothetical proteins.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=94.01  E-value=0.6  Score=31.30  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchH
Q psy7008           8 IFVPTTGFIGSIVSMCIIKRIGKRP   32 (101)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~d~~grr~   32 (101)
                      ....+..+++.++.+++.||.+|+.
T Consensus       259 ~~~~~~~iig~~~~~~l~~r~~~~~  283 (394)
T PRK10213        259 LSFGIASFVGTSLSSFILKRSVKLA  283 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhH
Confidence            3445677888888899999854443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=93.77  E-value=0.14  Score=35.56  Aligned_cols=89  Identities=18%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHhh----cCc-hHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           9 FVPTTGFIGSIVSMCIIKR----IGK-RPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~----~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +.-+...+..++.|.+.||    +|| |+.++.+.+..++...++..........+.....+...++...++...-| ..
T Consensus        56 v~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniP-y~  134 (467)
T COG2211          56 VARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIP-YG  134 (467)
T ss_pred             HHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCc-hh
Confidence            3345566778888889986    554 56777777877777776654331122234445556677777777664322 23


Q ss_pred             hhecccCC-ccccccc
Q psy7008          84 MLLSEVFP-LRSVFRY   98 (101)
Q Consensus        84 ~~~~El~p-~~~R~~~   98 (101)
                      ++.+|+.+ ++.|.+-
T Consensus       135 al~~~iT~d~~ER~~l  150 (467)
T COG2211         135 ALGPEITQDPQERASL  150 (467)
T ss_pred             hcchhhcCCHHHHHHH
Confidence            46778876 4555543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=93.57  E-value=0.97  Score=31.26  Aligned_cols=85  Identities=9%  Similarity=-0.048  Sum_probs=45.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCch-HHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKR-PLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      .+.+..+...+-.++-|..+|+.|+| +.+-....+..++...+.....   ....+..+.++.+-...+..+ +.....
T Consensus        63 ~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~---~s~~~~~l~~~il~~i~~~~s-~Vfyds  138 (438)
T COG2270          63 ASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP---GSYLLLLLLFLILASIGFEFS-NVFYDS  138 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHhcchh-heehhh
Confidence            44555666666777778899998855 4555555555566555554331   123333444444444444332 233445


Q ss_pred             hecccCCccc
Q psy7008          85 LLSEVFPLRS   94 (101)
Q Consensus        85 ~~~El~p~~~   94 (101)
                      +..++.+++.
T Consensus       139 ~L~~~~~k~~  148 (438)
T COG2270         139 MLPRLTTKDN  148 (438)
T ss_pred             HhhhhcCccc
Confidence            5666666543

>TIGR00788 fbt folate/biopterin transporter

Probab=93.49  E-value=0.086  Score=36.31  Aligned_cols=94  Identities=12%  Similarity=0.025  Sum_probs=57.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc--c-CCC-CccHHHHHHHHHHHHHHhhccccc
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY--K-GTV-GSQILPFIMLLLLAFFTSIGIAAI   81 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~   81 (101)
                      .....++..+++....+++.+|++.|+.+..+................  . ... ...+.......+....++....+.
T Consensus       293 ~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~  372 (468)
T TIGR00788       293 SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF  372 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH
Confidence            345566888899999999999999999998888777766543221110  0 000 112222222333344444444333


Q ss_pred             hhhhecccCCccccccccc
Q psy7008          82 PWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        82 ~~~~~~El~p~~~R~~~~~  100 (101)
                       ..+..|+.|++.+++.++
T Consensus       373 -~~~~~~~~p~~~egt~~a  390 (468)
T TIGR00788       373 -LVLLARLCPSGCESSVFA  390 (468)
T ss_pred             -HHHHHHhCCCCceehHHH
Confidence             556889999999988765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=93.32  E-value=0.86  Score=31.00  Aligned_cols=41  Identities=15%  Similarity=0.099  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-chHHHHhHhHHHHHHHHH
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIG-KRPLSLISIGGTAFSALT   47 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~g-rr~~~~~~~~~~~~~~~~   47 (101)
                      ..+..+..++++++-+.+.||.+ +|+.+....+...+....
T Consensus        43 ~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen   43 LAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            44556778889999999999986 455665555555444433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=92.44  E-value=1.8  Score=31.54  Aligned_cols=81  Identities=12%  Similarity=-0.009  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhc-cccchhhhecccC
Q psy7008          13 TGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIG-IAAIPWMLLSEVF   90 (101)
Q Consensus        13 ~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~El~   90 (101)
                      ...+.+++++++.|+ +||++.+..+.++..++..++.....+..............+..+..+.+ .-+.......|.+
T Consensus        35 l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf  114 (654)
T TIGR00926        35 LCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF  114 (654)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence            345667788899985 79999998888887777766654321100001111112223333333333 3344555677888


Q ss_pred             Ccc
Q psy7008          91 PLR   93 (101)
Q Consensus        91 p~~   93 (101)
                      +.+
T Consensus       115 ~~~  117 (654)
T TIGR00926       115 EER  117 (654)
T ss_pred             Ccc
Confidence            754

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=92.22  E-value=0.45  Score=31.59  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=15.7

Q ss_pred             HHHHHHHHHH-HHHHhhcCchHHHHhHh
Q psy7008          12 TTGFIGSIVS-MCIIKRIGKRPLSLISI   38 (101)
Q Consensus        12 ~~~~~~~~~~-~~l~d~~grr~~~~~~~   38 (101)
                      ...++.+++- .+..||.|||+..+...
T Consensus        49 ~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718        49 VVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHhccccccCCcchhHHHHH
Confidence            3344444444 45678889888764443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00788 fbt folate/biopterin transporter

Probab=91.48  E-value=1.7  Score=30.03  Aligned_cols=24  Identities=13%  Similarity=-0.153  Sum_probs=16.8

Q ss_pred             HHHHHHHHhhcC-----chHHHHhHhHHH
Q psy7008          18 SIVSMCIIKRIG-----KRPLSLISIGGT   41 (101)
Q Consensus        18 ~~~~~~l~d~~g-----rr~~~~~~~~~~   41 (101)
                      ..+.+.+.||++     ||+.++.+.+..
T Consensus        77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence            344788999997     677666665554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=91.41  E-value=2.3  Score=29.49  Aligned_cols=90  Identities=20%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-cCCC---CccHHHHHHHHHHHH-HHhhccccchh
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-KGTV---GSQILPFIMLLLLAF-FTSIGIAAIPW   83 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~-~~~~~~~~~~~   83 (101)
                      +..+.++.++++..++.+|+|..+.-..+...+..+..+...... +..+   ......+....+--. ..+... +...
T Consensus       301 ~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL-~~~q  379 (432)
T PF06963_consen  301 LGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDL-AVTQ  379 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence            345678899999999999999888877777777666555443333 2211   111111111111111 122221 2233


Q ss_pred             hhecccCCccccccccc
Q psy7008          84 MLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        84 ~~~~El~p~~~R~~~~~  100 (101)
                       +..|..|.+.|+.-.|
T Consensus       380 -i~Qe~V~~~~Rg~v~g  395 (432)
T PF06963_consen  380 -IMQENVPESERGAVSG  395 (432)
T ss_pred             -hhcccCCHHHhhHHHH
Confidence             5789999999997654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=90.37  E-value=2.1  Score=29.95  Aligned_cols=35  Identities=9%  Similarity=-0.100  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHH
Q psy7008          17 GSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGIL   51 (101)
Q Consensus        17 ~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~   51 (101)
                      ..++..++.+|++|++++............+++..
T Consensus        60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v   94 (472)
T TIGR00769        60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV   94 (472)
T ss_pred             HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence            36778899999999998877666655555555554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3762|consensus

Probab=89.25  E-value=0.82  Score=32.75  Aligned_cols=45  Identities=18%  Similarity=0.075  Sum_probs=32.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchH-HHHhHhHHHHHHHHHHH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRP-LSLISIGGTAFSALTCG   49 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~-~~~~~~~~~~~~~~~~~   49 (101)
                      .++....++.+++.++.++++||+.+|+ +++.+........+++.
T Consensus        50 tl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~   95 (618)
T KOG3762|consen   50 TLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLV   95 (618)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhee
Confidence            3455667899999999999999997554 55555566655555544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=87.83  E-value=1.3  Score=30.37  Aligned_cols=83  Identities=12%  Similarity=0.003  Sum_probs=42.7

Q ss_pred             HHHHHHHHhhcC-----chHHHHhH-hHHHHHHHHHHHHHhc---c---CCCCccHHHHHHHHHHHHHHhhcc---ccch
Q psy7008          18 SIVSMCIIKRIG-----KRPLSLIS-IGGTAFSALTCGILSY---K---GTVGSQILPFIMLLLLAFFTSIGI---AAIP   82 (101)
Q Consensus        18 ~~~~~~l~d~~g-----rr~~~~~~-~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~l~~~~~~~~~---~~~~   82 (101)
                      -...|+..|+.+     ||.-+++. ...+.....+......   +   +.....+.......+-...++.+.   ++..
T Consensus        31 R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~  110 (403)
T PF03209_consen   31 RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSF  110 (403)
T ss_pred             HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHH
Confidence            344566779888     88655444 4444443333322221   1   222233333333332222333333   3334


Q ss_pred             hhhecccCCccccccccc
Q psy7008          83 WMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        83 ~~~~~El~p~~~R~~~~~  100 (101)
                      ..+.+|..|++.|++..+
T Consensus       111 lALl~D~~~e~~R~~~v~  128 (403)
T PF03209_consen  111 LALLADLAPEERRPRVVA  128 (403)
T ss_pred             HHHHHhcCCHhhhhhhHH
Confidence            557889999999998764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325|consensus

Probab=87.50  E-value=1  Score=31.61  Aligned_cols=93  Identities=14%  Similarity=0.070  Sum_probs=53.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCc-hHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccch
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGK-RPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIP   82 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   82 (101)
                      ++......++..+++++.++=.+|.+. |+-++.+.+.+.++..++....+.. +...+..++...+..  .+.+.-...
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~-~~~~y~mL~~R~l~G--vg~~n~a~l  150 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP-NGVKYLMLVARILTG--VGVGNFAVL  150 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHcC--cCcccHHHH
Confidence            344555667788888888887777773 5556677777777777764443311 113444444444332  333333444


Q ss_pred             hhhecccCCcccccccc
Q psy7008          83 WMLLSEVFPLRSVFRYH   99 (101)
Q Consensus        83 ~~~~~El~p~~~R~~~~   99 (101)
                      =.|.+.-...+.|.+++
T Consensus       151 R~Y~a~~s~~~dR~rA~  167 (488)
T KOG2325|consen  151 RAYIADASTVEDRPRAF  167 (488)
T ss_pred             HHHHHhccCccchHHHH
Confidence            45667755555555543

>KOG3098|consensus

Probab=87.38  E-value=4.7  Score=28.28  Aligned_cols=84  Identities=13%  Similarity=0.028  Sum_probs=53.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .+.+......+.+++++.+.|+++.|+.+..+..+.......+..       .+.+...+.-.+.+++.+.-|.. .-.|
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-------~N~y~~yfssallG~Gaallw~G-qG~y  126 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-------PNSYYLYFSSALLGFGAALLWTG-QGGY  126 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-------cchHHHHHHHHHhhhhHHheecc-ccee
Confidence            356667777889999999999999999999888776655444332       23444444444444444443322 2235


Q ss_pred             ecccCCcccccc
Q psy7008          86 LSEVFPLRSVFR   97 (101)
Q Consensus        86 ~~El~p~~~R~~   97 (101)
                      .+|..+.+.+.+
T Consensus       127 lt~~st~~tie~  138 (461)
T KOG3098|consen  127 LTSNSTRETIER  138 (461)
T ss_pred             hhhcCChhhHHH
Confidence            677777666544

>KOG2504|consensus

Probab=86.52  E-value=1.9  Score=30.39  Aligned_cols=41  Identities=15%  Similarity=0.155  Sum_probs=29.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcC--chHHHHhHhHHHHHHH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIG--KRPLSLISIGGTAFSA   45 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~g--rr~~~~~~~~~~~~~~   45 (101)
                      ....+.++...++-++.+++.|+..  ++.....+.+..+++.
T Consensus       337 ~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  337 FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence            3456778888999999999999887  4445555556555555

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=84.60  E-value=1.9  Score=29.69  Aligned_cols=28  Identities=14%  Similarity=0.061  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHh
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLI   36 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~   36 (101)
                      ...+..++..++.|.+.||.|.|+-++.
T Consensus        51 ~~~~~~l~~qp~~G~i~Dklg~kK~Ll~   78 (412)
T PF01306_consen   51 AGSLFALLAQPVYGFISDKLGLKKHLLW   78 (412)
T ss_dssp             HHHHHHHHTHHHHHHHHHHCTTCSHHHH
T ss_pred             HHHHHHHHHHHhHHHhcchhhhhHHHHH
Confidence            3456677888889999999996654433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2533|consensus

Probab=83.43  E-value=4.3  Score=28.66  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=27.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhh----cCchHHHHhHhH
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKR----IGKRPLSLISIG   39 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~----~grr~~~~~~~~   39 (101)
                      +..++...+.++++.++++++.||    ..+|........
T Consensus       312 ~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~  351 (495)
T KOG2533|consen  312 NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLC  351 (495)
T ss_pred             ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            456677889999999999999999    556655544443

>KOG2563|consensus

Probab=82.83  E-value=13  Score=26.34  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=22.9

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCchH
Q psy7008           4 SSPQIFVPTTGFIGSIVSMCIIKRIGKRP   32 (101)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~   32 (101)
                      ++...+..+.+.+++.+++.+.||.+.-+
T Consensus       304 G~ig~l~iv~Gmlga~~~gii~Dktk~fk  332 (480)
T KOG2563|consen  304 GYIGALMIVAGMLGALASGIIADKTKKFK  332 (480)
T ss_pred             chhHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence            45566777889999999999999986433

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.40  E-value=6.7  Score=21.98  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHH
Q psy7008          14 GFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCG   49 (101)
Q Consensus        14 ~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~   49 (101)
                      +.+-....||+.||+ |-++..++.+.+.+.+.-...
T Consensus        55 GilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ln   91 (116)
T COG5336          55 GILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLN   91 (116)
T ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            333444557888886 666666555555554444433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=81.01  E-value=14  Score=26.96  Aligned_cols=45  Identities=7%  Similarity=-0.129  Sum_probs=29.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchH-HHHhHhHHHHHHHHHHH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRP-LSLISIGGTAFSALTCG   49 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~-~~~~~~~~~~~~~~~~~   49 (101)
                      +.+...++....+.++.+.+..|++|-| .++.+...+..+...+.
T Consensus       353 ~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama  398 (599)
T PF06609_consen  353 WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMA  398 (599)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHH
Confidence            3455566777888888888888887554 44566555555444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.42
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.75
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.74
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.58
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.57
2xut_A	524	Proton/peptide symporter family protein; transport	98.5
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.43
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.32
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.15
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.13
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.84
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.42
2xut_A	524	Proton/peptide symporter family protein; transport	94.04

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.42  E-value=6.3e-13  Score=88.03  Aligned_cols=93  Identities=22%  Similarity=0.408  Sum_probs=74.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      .+.+.++..+++.++++++.||+|||+.++.+.....++.+.+.....  .....+..+....++...++.++++++|.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (491)
T 4gc0_A          317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--TQAPGIVALLSMLFYVAAFAMSWGPVCWVL  394 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            355667888999999999999999999999988888887776655442  123344555666677777888888999999


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      .+|++|++.|+++.+
T Consensus       395 ~~E~fPt~~R~~~~g  409 (491)
T 4gc0_A          395 LSEIFPNAIRGKALA  409 (491)
T ss_dssp             HHHSSCTTTHHHHHH
T ss_pred             HHHhCCHhHHHHHHH
Confidence            999999999999875

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.96  E-value=8.7e-10  Score=72.97  Aligned_cols=92  Identities=12%  Similarity=-0.026  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhc-c------C----CCCccH-HHHHHHHHHHHHH
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSY-K------G----TVGSQI-LPFIMLLLLAFFT   74 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-~------~----~~~~~~-~~~~~~~l~~~~~   74 (101)
                      +....+...+|+++.+++.||+|||+.+..+..+..++....+.... .      .    ....+. ..++...+.... 
T Consensus        61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g-  139 (491)
T 4gc0_A           61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIG-  139 (491)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHH-
Confidence            34456778899999999999999999999999888888777653211 0      0    001222 233333333322 


Q ss_pred             hhccccchhhhecccCCcccccccc
Q psy7008          75 SIGIAAIPWMLLSEVFPLRSVFRYH   99 (101)
Q Consensus        75 ~~~~~~~~~~~~~El~p~~~R~~~~   99 (101)
                      ..+..+....+.+|..|++.|++..
T Consensus       140 ~G~~~~~~~~~i~E~~p~~~rg~~~  164 (491)
T 4gc0_A          140 VGLASMLSPMYIAELAPAHIRGKLV  164 (491)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCHHhhhhhH
Confidence            2233456677899999999998754

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.75  E-value=1.6e-08  Score=65.94  Aligned_cols=92  Identities=13%  Similarity=-0.045  Sum_probs=63.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++.........   ....+...+...+.....+. ..+....
T Consensus        65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~-~~~~~~~  140 (438)
T 3o7q_A           65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---IMNYTLFLVGLFIIAAGLGC-LETAANP  140 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHhhHHH-hhhhHHH
Confidence            3455667778889999999999999999999999988888877632221   22333333444444433333 3355567


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       141 ~~~~~~~~~~r~~~~~  156 (438)
T 3o7q_A          141 FVTVLGPESSGHFRLN  156 (438)
T ss_dssp             HHHHSSCSTTHHHHHH
T ss_pred             HHHHHcCchhHHHHHH
Confidence            7899999999987654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.74  E-value=3.2e-08  Score=64.61  Aligned_cols=93  Identities=11%  Similarity=0.019  Sum_probs=63.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +...+..+...++.++.+++.||+|||+.+..+.....++..........  ....+...+...+.....+. ..+....
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~-~~~~~~~  142 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGM-GWPPCGR  142 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHH-THHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHhhh-ccchHHH
Confidence            44566678888999999999999999999999998888888777651100  01222333334444333333 3355567


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       143 ~i~~~~~~~~r~~~~~  158 (451)
T 1pw4_A          143 TMVHWWSQKERGGIVS  158 (451)
T ss_dssp             HHHTTCTTTHHHHHHH
T ss_pred             HHHHHCCchhhhHHHH
Confidence            7899999999988764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.58  E-value=1.1e-07  Score=62.90  Aligned_cols=85  Identities=12%  Similarity=0.096  Sum_probs=58.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhh-cCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKR-IGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPW   83 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   83 (101)
                      +......+...++.++.+++.|| +|||+.+..+.....++......      ....+...+...+.....+. ..+...
T Consensus        58 ~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~~-~~~~~~  130 (491)
T 4aps_A           58 SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL------PFGASALFGSIILIIIGTGF-LKPNVS  130 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS------CCSTTHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHh-ccchHH
Confidence            34556678888999999999999 89999999998888887776543      22233333333433333332 335566


Q ss_pred             hhecccCCccccc
Q psy7008          84 MLLSEVFPLRSVF   96 (101)
Q Consensus        84 ~~~~El~p~~~R~   96 (101)
                      .+.+|.+|++.|.
T Consensus       131 ~~~~~~~~~~~~~  143 (491)
T 4aps_A          131 TLVGTLYDEHDRR  143 (491)
T ss_dssp             HHHHHHSSSCTTH
T ss_pred             HHHHHHcCccccc
Confidence            7789999998844

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.57  E-value=2.5e-08  Score=64.03  Aligned_cols=89  Identities=15%  Similarity=0.065  Sum_probs=61.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.+++.||+|||+.+..+.....++........      ..+.......+.....+ ...+....
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~l~g~~~~-~~~~~~~~  111 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS------SLTVLIAASAMQGMGTG-VGGVMART  111 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHH-hhhhhHHH
Confidence            345566778889999999999999999999998888888777665432      22233333333333322 23455666


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       112 ~~~~~~~~~~~~~~~~  127 (375)
T 2gfp_A          112 LPRDLYERTQLRHANS  127 (375)
T ss_dssp             HHHHHHHTSSCCSHHH
T ss_pred             HHHHHCCHHHHHHHHH
Confidence            7899999999988754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.50  E-value=4.7e-07  Score=60.48  Aligned_cols=87  Identities=15%  Similarity=0.004  Sum_probs=59.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhc-CchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRI-GKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      ......+...++.++.+++.||+ |||+.+..+.....++.......     ....+...+...+.....+ ...+....
T Consensus        59 ~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~g~~~~-~~~~~~~~  132 (524)
T 2xut_A           59 VFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-----EHSVQGFYTGLFLIALGSG-GIKPLVSS  132 (524)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-----SSCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHhcc-ccchhHHH
Confidence            44556677888999999999999 99999998888887777665542     1122333333333333332 33455667


Q ss_pred             hecccCCccccccc
Q psy7008          85 LLSEVFPLRSVFRY   98 (101)
Q Consensus        85 ~~~El~p~~~R~~~   98 (101)
                      +.+|.+|++.|++.
T Consensus       133 ~~~~~~~~~~r~~~  146 (524)
T 2xut_A          133 FMGDQFDQSNKSLA  146 (524)
T ss_dssp             HHHHTCSTTTTTHH
T ss_pred             HHHHHcCccchHHH
Confidence            78999999999753

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.43  E-value=2.3e-07  Score=60.78  Aligned_cols=85  Identities=14%  Similarity=0.032  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhecc
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLLSE   88 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~E   88 (101)
                      +..+...++.++.+++.||+|||+.+..+.....+.......      ....+.......+...... ...+..+.+.+|
T Consensus       267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~  339 (417)
T 2cfq_A          267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------ATSALEVVILKTLHMFEVP-FLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT------CCSHHHHHHHTTHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            334566778899999999999999888777666655443321      1122222222222222221 122334668899


Q ss_pred             cCCccccccccc
Q psy7008          89 VFPLRSVFRYHD  100 (101)
Q Consensus        89 l~p~~~R~~~~~  100 (101)
                      .+|++.|+++.+
T Consensus       340 ~~p~~~~g~~~g  351 (417)
T 2cfq_A          340 QFEVRFSATIYL  351 (417)
T ss_dssp             HSCHHHHHHHHH
T ss_pred             HCCHHHHHHHHH
Confidence            999999998654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.32  E-value=1.8e-06  Score=57.19  Aligned_cols=95  Identities=12%  Similarity=-0.078  Sum_probs=56.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHH-----hHhHHHHHHHHHHHHHhc-c--CCCCccHHHHHHHHHHHHHHhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSL-----ISIGGTAFSALTCGILSY-K--GTVGSQILPFIMLLLLAFFTSI   76 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~   76 (101)
                      .......+...++..+.+++.||++||+...     .+.....++...+..... .  ......+.......+...... 
T Consensus       323 ~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-  401 (491)
T 4aps_A          323 WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-  401 (491)
T ss_dssp             GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-
Confidence            3455667778888999999999999986544     555555555444433221 1  111122333333333333332 


Q ss_pred             ccccchhhhecccCCccccccccc
Q psy7008          77 GIAAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        77 ~~~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      ...+..+.+..|.+|++.|+++.+
T Consensus       402 ~~~~~~~~~~~~~~p~~~~g~~~g  425 (491)
T 4aps_A          402 LISPVGLSVTTKLAPKAFNSQMMS  425 (491)
T ss_dssp             TTTTHHHHHHHHHTTTTCSSSSTH
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHH
Confidence            334666778999999999998875

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.15  E-value=4e-06  Score=54.67  Aligned_cols=90  Identities=11%  Similarity=0.216  Sum_probs=54.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhc--CchHHHHhHhHHHH-HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccch
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRI--GKRPLSLISIGGTA-FSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIP   82 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   82 (101)
                      ......+..+++.++.+++.||+  |||+.+..+..... ++...+.. .   .....+.......+..... ....+..
T Consensus       293 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~~-~~~~~~~  367 (451)
T 1pw4_A          293 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-N---PAGNPTVDMICMIVIGFLI-YGPVMLI  367 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-C---CTTCHHHHHHHHHHHHHHH-THHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-h---cccCHHHHHHHHHHHHHHH-hchHHHH
Confidence            44556678889999999999999  99998877665554 33332211 0   0112222323232222222 2223445


Q ss_pred             hhhecccCCccccccccc
Q psy7008          83 WMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        83 ~~~~~El~p~~~R~~~~~  100 (101)
                      +.+..|.+|++.|+++.+
T Consensus       368 ~~~~~~~~~~~~~g~~~~  385 (451)
T 1pw4_A          368 GLHALELAPKKAAGTAAG  385 (451)
T ss_dssp             HHHHHHTSCTTHHHHHHH
T ss_pred             HHHHHHHhchhhhhhHHH
Confidence            567899999999998765

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.13  E-value=7.9e-06  Score=53.17  Aligned_cols=85  Identities=15%  Similarity=-0.003  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ...+..+...++.++.+++.||+|||+.+..+.....++.......      ...+. .....+.....+ ...+..+.+
T Consensus       300 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~g~~~~-~~~~~~~~~  371 (438)
T 3o7q_A          300 YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------GGHVG-LIALTLCSAFMS-IQYPTIFSL  371 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------CHHHH-HHHHHHHHHHHT-THHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------CCcHH-HHHHHHHHHHHH-HHHHHHHHH
Confidence            3455667888999999999999999999988887777666554431      12222 222233333332 234566777


Q ss_pred             ecccCCcccccccc
Q psy7008          86 LSEVFPLRSVFRYH   99 (101)
Q Consensus        86 ~~El~p~~~R~~~~   99 (101)
                      ..|.+|++ |+++.
T Consensus       372 ~~~~~~~~-~~~~~  384 (438)
T 3o7q_A          372 GIKNLGQD-TKYGS  384 (438)
T ss_dssp             HHSSCGGG-HHHHH
T ss_pred             HHhhcccc-ccchh
Confidence            78999977 66554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.84  E-value=0.0011  Score=43.25  Aligned_cols=38  Identities=13%  Similarity=0.030  Sum_probs=30.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTA   42 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~   42 (101)
                      +......+...++.++.|++.||+|||+.+..+.....
T Consensus        47 ~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~   84 (417)
T 2cfq_A           47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            34455677888999999999999999998887665443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.42  E-value=0.00035  Score=44.62  Aligned_cols=84  Identities=14%  Similarity=-0.012  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHHhHhHH-HHHHHH--HHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           9 FVPTTGFIGSIVSMCIIKRIGKRPLSLISIGG-TAFSAL--TCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         9 ~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ...+..+++.++.+++.||.+||.  ..+... ...+..  ......    ....+.......+.....+. ..+....+
T Consensus       243 ~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~-~~~~~~~~  315 (375)
T 2gfp_A          243 LPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG----VMNVWTLLVPAALFFFGAGM-LFPLATSG  315 (375)
T ss_dssp             THHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH----HHHHHHHHHHHHHHHHHHHH-TSSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc----cccHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence            344556677777777777776632  222221 111111  111100    01222233333344434333 34666677


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+| +.|+++.+
T Consensus       316 ~~~~~p-~~~g~~~g  329 (375)
T 2gfp_A          316 AMEPFP-FLAGTAGA  329 (375)
T ss_dssp             HHTHHH-HHHHHHHH
T ss_pred             HHHhCC-cccchHHH
Confidence            889998 88887764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.04  E-value=0.018  Score=38.39  Aligned_cols=22  Identities=9%  Similarity=-0.167  Sum_probs=18.2

Q ss_pred             ccchhhhecccCCccccccccc
Q psy7008          79 AAIPWMLLSEVFPLRSVFRYHD  100 (101)
Q Consensus        79 ~~~~~~~~~El~p~~~R~~~~~  100 (101)
                      .+..+.+.+|..|++.|++++|
T Consensus       423 ~~~~~~~~~~~~p~~~~g~~~g  444 (524)
T 2xut_A          423 SATGLEFAYSQAPKAMKGTIMS  444 (524)
T ss_dssp             HHHHTTTHHHHCCTTCCTTTHH
T ss_pred             HHHHHHHHHHhCcHHHHhHHHH
Confidence            4566778899999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.36
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.07
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.55

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=8.5e-10  Score=70.15  Aligned_cols=93  Identities=12%  Similarity=0.062  Sum_probs=63.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhh
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWM   84 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   84 (101)
                      +......+...++.++.|++.||+|||+.+..+.....++....+....  .....+...+...+...+.+.. .+....
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~~~~~  139 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW--ATSSIAVMFVLLFLCGWFQGMG-WPPCGR  139 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH--HHSSSSHHHHHHHHHHHHHHHT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccch--hhhhHHHHHHHHHHHHHhhhhh-hhHHHH
Confidence            4456677888899999999999999999999998888888776654321  0112223333333333333333 244556


Q ss_pred             hecccCCccccccccc
Q psy7008          85 LLSEVFPLRSVFRYHD  100 (101)
Q Consensus        85 ~~~El~p~~~R~~~~~  100 (101)
                      +.+|.+|++.|++..+
T Consensus       140 ~i~~~~~~~~r~~~~~  155 (447)
T d1pw4a_         140 TMVHWWSQKERGGIVS  155 (447)
T ss_dssp             HHHTTCTTTHHHHHHH
T ss_pred             HHHHHHHhhccccccc
Confidence            7899999999988764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=3.5e-07  Score=56.57  Aligned_cols=87  Identities=14%  Similarity=0.025  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhhe
Q psy7008           7 QIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWMLL   86 (101)
Q Consensus         7 ~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   86 (101)
                      .....+...++..+.+++.||.+||+.+..+.....+....+..      ....+.......+.....+.. .+....+.
T Consensus       265 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~  337 (417)
T d1pv7a_         265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF------ATSALEVVILKTLHMFEVPFL-LVGCFKYI  337 (417)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc------ccccchhhHHHHHHHHHHHHH-HHHHHHHH
Confidence            34455677788888999999999999998888887777665543      233444444444444444433 35566678


Q ss_pred             cccCCccccccccc
Q psy7008          87 SEVFPLRSVFRYHD  100 (101)
Q Consensus        87 ~El~p~~~R~~~~~  100 (101)
                      +|.+|++.|+++.+
T Consensus       338 ~~~~~~~~~~~~~~  351 (417)
T d1pv7a_         338 TSQFEVRFSATIYL  351 (417)
T ss_dssp             HHHSCGGGHHHHHH
T ss_pred             HHHCCHhHHHHHHH
Confidence            99999999998754

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=4.5e-06  Score=52.56  Aligned_cols=93  Identities=9%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHhhccccchhhh
Q psy7008           6 PQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGILSYKGTVGSQILPFIMLLLLAFFTSIGIAAIPWML   85 (101)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   85 (101)
                      ......+...++.++.+++.||.+||+..................... ......+.......... ....+..+..+.+
T Consensus       290 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  367 (447)
T d1pw4a_         290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-NPAGNPTVDMICMIVIG-FLIYGPVMLIGLH  367 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-CCTTCHHHHHHHHHHHH-HHHTHHHHHHHHH
T ss_pred             hhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHh-cccccHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            345566778899999999999999876554444333332222222111 11122233333333322 2222334556678


Q ss_pred             ecccCCccccccccc
Q psy7008          86 LSEVFPLRSVFRYHD  100 (101)
Q Consensus        86 ~~El~p~~~R~~~~~  100 (101)
                      ..|.+|++.|+++.|
T Consensus       368 ~~~~~p~~~~g~~~g  382 (447)
T d1pw4a_         368 ALELAPKKAAGTAAG  382 (447)
T ss_dssp             HHHTSCTTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHH
Confidence            899999999998765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=5.7e-05  Score=46.28  Aligned_cols=46  Identities=13%  Similarity=-0.024  Sum_probs=35.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCchHHHHhHhHHHHHHHHHHHH
Q psy7008           5 SPQIFVPTTGFIGSIVSMCIIKRIGKRPLSLISIGGTAFSALTCGI   50 (101)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~l~d~~grr~~~~~~~~~~~~~~~~~~~   50 (101)
                      +...+..+...++.++.|++.||+|||+.+..+.....++......
T Consensus        47 ~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~   92 (417)
T d1pv7a_          47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFI   92 (417)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            3455667788899999999999999999988877766666555443