Psyllid ID: psy7044

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN
Secondary Structure (PSIPRED)
ccEEEcccEEEcccccEEEEcccccEEEEEEcccccccEEEEEEEEcccccEEEEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccEEcccEEEcccccEEEEEcccccEEEEEEcEEccccEEEEEEEccccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
mfdifcprsqvrsegnveivnvpyntkLSIVDILRknsgvyrikaenasgkdeadVEITVLILKENIN
Flexible Loop (DISEMBL)
mfdifcprsqvrsegnveivnvpyntklsivdilrknsGVYRikaenasgkdeadveITVLILKENIN
Low Complexity Region (SEG)
MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN
Disordered region (IsUnstruct)
***IFC****VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE*******ADVEITVLIL*****
Disordered Region (DISOPRED)
*FD*F**RSQV**EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN**
Disordered Region (DISEMBL)
MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN
Disordered Region (DISPRO)
MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q23551	7158	Twitchin OS=Caenorhabditi	no	N/A	0.75	0.007	0.423	7e-05

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query: 10   QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            ++R+ G V++ N  Y +KL +  + R +SG + IKA NA+G+DEA V+I V+
Sbjct: 3013 EIRNGGRVKLDNPEYQSKLVVKQMERGDSGTFTIKAVNANGEDEATVKINVI 3064

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
307200525	5935	Titin [Harpegnathos saltator]	0.779	0.008	0.622	5e-11
242010244	8829	titin, putative [Pediculus humanus corpo	0.764	0.005	0.653	5e-11
340710318	8715	PREDICTED: twitchin-like [Bombus terrest	0.764	0.005	0.653	9e-11
350413804	8700	PREDICTED: twitchin-like [Bombus impatie	0.764	0.005	0.653	1e-10
328789682	8619	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.75	0.005	0.647	1e-10
270014673	8877	hypothetical protein TcasGA2_TC004721 [T	0.764	0.005	0.634	1e-10
189233817	8838	PREDICTED: similar to CG32019-PA [Tribol	0.764	0.005	0.634	1e-10
345486445	8816	PREDICTED: twitchin-like [Nasonia vitrip	0.75	0.005	0.647	1e-10
328710146	8645	PREDICTED: twitchin-like [Acyrthosiphon	0.602	0.004	0.653	3e-10
380026625	8679	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.75	0.005	0.627	3e-10

>gi|307200525|gb|EFN80687.1| Titin [Harpegnathos saltator]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/53 (62%), Positives = 45/53 (84%)

Query: 9   SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           S+V+S  N+EIVNV YNTKL+I D LRKN+G+++IKA N  G+DEA+VE+T+L
Sbjct: 515 SEVKSGENIEIVNVDYNTKLTISDSLRKNTGIWKIKAVNPHGEDEAEVEVTIL 567

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010244|ref|XP_002425880.1| titin, putative [Pediculus humanus corporis] gi|212509846|gb|EEB13142.1| titin, putative [Pediculus humanus corporis]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 43/52 (82%)

Query: 10   QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            +++S GNVEI+NV YNTK SIVD +RK SG+Y+I AEN  GKDEA V+IT+L
Sbjct: 2841 EIQSTGNVEIINVDYNTKFSIVDSIRKQSGLYKIVAENQHGKDEATVDITIL 2892

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710318|ref|XP_003393739.1| PREDICTED: twitchin-like [Bombus terrestris]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 45/52 (86%)

Query: 10   QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            +V++  N+EIVNV YNTKLSI D +RKN+GV++IKA NA G+DEA+VEIT+L
Sbjct: 2737 EVKTGENIEIVNVDYNTKLSITDSVRKNTGVWKIKAVNAHGEDEAEVEITIL 2788

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413804|ref|XP_003490119.1| PREDICTED: twitchin-like [Bombus impatiens]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 45/52 (86%)

Query: 10   QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            +V++  N+EIVNV YNTKLSI D +RKN+GV++IKA NA G+DEA+VEIT+L
Sbjct: 2715 EVKTGENIEIVNVDYNTKLSITDSVRKNTGVWKIKAVNAHGEDEAEVEITIL 2766

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 44/51 (86%)

Query: 11   VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            V+S GN+EIVNV YNTKL+I D +RKN+GV++IKA N  G+DEA+VE+T+L
Sbjct: 2634 VQSGGNIEIVNVDYNTKLNITDCVRKNTGVWKIKAVNPHGEDEAEVEVTIL 2684

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014673|gb|EFA11121.1| hypothetical protein TcasGA2_TC004721 [Tribolium castaneum]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 45/52 (86%)

Query: 10   QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            +V+SEGN+EIVNV YNTK++I + +RKN+G+Y+IKA N  G DEA+VE+TVL
Sbjct: 2898 EVKSEGNIEIVNVDYNTKITINNSIRKNTGIYKIKAVNEHGSDEAEVEVTVL 2949

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233817|ref|XP_971502.2| PREDICTED: similar to CG32019-PA [Tribolium castaneum]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 45/52 (86%)

Query: 10   QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            +V+SEGN+EIVNV YNTK++I + +RKN+G+Y+IKA N  G DEA+VE+TVL
Sbjct: 2859 EVKSEGNIEIVNVDYNTKITINNSIRKNTGIYKIKAVNEHGSDEAEVEVTVL 2910

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486445|ref|XP_003425477.1| PREDICTED: twitchin-like [Nasonia vitripennis]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 44/51 (86%)

Query: 11   VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            V+S GN+EIVN+ YNTKL+I D +R N+GV++IKA NA G+DEA+VE+TVL
Sbjct: 2801 VKSAGNIEIVNIEYNTKLNISDSIRANTGVWKIKAVNAHGEDEAEVEVTVL 2851

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 42/49 (85%)

Query: 13   SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            SEGNV+IVN+PYN+K+++ D  RK+SG+Y+I AEN  GKDEA VE+TVL
Sbjct: 2664 SEGNVQIVNIPYNSKITLSDTGRKDSGLYKIIAENEFGKDEATVEVTVL 2712

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 44/51 (86%)

Query: 11   VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            V+S GN+EIV+V YNTKL+I D +RKN+GV++IKA N  G+DEA+VE+T+L
Sbjct: 2694 VQSGGNIEIVSVDYNTKLNITDCVRKNTGVWKIKAVNPHGEDEAEVEVTIL 2744

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.794	0.006	0.481	8.3e-08
UNIPROTKB|Q8T6S9	350	bt "Bent" [Drosophila simulans	0.602	0.117	0.536	6.2e-07
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.764	0.007	0.423	0.00034

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 8.3e-08, P = 8.3e-08
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query:     8 RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
             + +V S+ NV++ NV YNTKL +    R +SG+Y + AENA+G+D ADV++TV+
Sbjct:  5017 KKEVYSKDNVKVTNVDYNTKLKVNSATRSDSGIYTVFAENANGEDSADVKVTVI 5070

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|Q8T6S9 bt "Bent" [Drosophila simulans (taxid:7240)]

 Score = 121 (47.7 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 22/41 (53%), Positives = 31/41 (75%)

Query:    21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
             NV YNTKL +    R +SG+Y + AENA+G+D ADV++TV+
Sbjct:     1 NVDYNTKLKVNSATRSDSGIYTVFAENANGEDSADVKVTVI 41

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 110 (43.8 bits), Expect = 0.00034, P = 0.00034
 Identities = 22/52 (42%), Positives = 36/52 (69%)

Query:    10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
             ++R+ G V++ N  Y +KL +  + R +SG + IKA NA+G+DEA V+I V+
Sbjct:  3013 EIRNGGRVKLDNPEYQSKLVVKQMERGDSGTFTIKAVNANGEDEATVKINVI 3064


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       68        68   0.00091  102 3  11 22  0.47    28
                                                     29  0.38    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  427 (46 KB)
  Total size of DFA:  72 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  8.64u 0.08s 8.72t   Elapsed:  00:00:09
  Total cpu time:  8.64u 0.08s 8.72t   Elapsed:  00:00:11
  Start:  Thu Aug 15 10:56:35 2013   End:  Thu Aug 15 10:56:46 2013

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	68
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-08
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-04
smart00409	85	smart00409, IG, Immunoglobulin	4e-04

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 45.7 bits (109), Expect = 2e-08
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 5  FCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          F     +RS    ++        L+I ++   + G Y   A N++G+ EA  E+TV
Sbjct: 35 FKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 41.0 bits (97), Expect = 1e-06
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 9  SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
            ++  G V+I     +T L I +  R +SG Y +  +N +G+  A + + V
Sbjct: 23 KPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 34.8 bits (80), Expect = 4e-04
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          +   G   +      + L+I ++  ++SG Y   A N+SG   +   +TV
Sbjct: 36 LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 34.8 bits (80), Expect = 4e-04
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          +   G   +      + L+I ++  ++SG Y   A N+SG   +   +TV
Sbjct: 36 LAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.89
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.81
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.78
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.77
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.77
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.77
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.77
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.75
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.74
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.74
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.74
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.73
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.73
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.73
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.73
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.71
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.71
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.71
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.7
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.7
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.68
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.68
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.67
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.67
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.67
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.66
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.66
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.66
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.66
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.66
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.66
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.65
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.65
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.65
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.65
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.65
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.65
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.64
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.64
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.64
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.63
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.62
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.62
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.61
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.61
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.61
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.6
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.58
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.58
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.57
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.56
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.55
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.55
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.55
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.53
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.53
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.53
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.52
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.52
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.51
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.5
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.49
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.49
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.48
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.48
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.47
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.45
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.44
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.44
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.43
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.43
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.41
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.41
KOG3513|consensus	1051		99.4
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.38
KOG3513|consensus	1051		99.38
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.37
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.35
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.35
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.34
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.34
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.31
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.3
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.3
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.29
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.29
smart00409	86	IG Immunoglobulin.	99.27
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.27
KOG4194|consensus	873		99.23
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.21
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.18
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.16
PHA02826	227	IL-1 receptor-like protein; Provisional	99.14
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.12
KOG4221|consensus	1381		99.11
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.1
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.1
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.09
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.09
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.08
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.07
PHA02785	326	IL-beta-binding protein; Provisional	99.07
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.03
PHA02826	227	IL-1 receptor-like protein; Provisional	99.02
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.95
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.93
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.92
KOG4222|consensus	1281		98.92
PHA02785	326	IL-beta-binding protein; Provisional	98.91
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.91
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.9
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.89
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.88
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.86
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.81
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.75
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.73
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.72
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.68
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.67
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.67
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.65
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.61
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.6
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.6
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.56
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.55
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.55
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.51
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.51
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.51
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.44
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.43
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.41
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.41
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.36
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.36
KOG4194|consensus	873		98.29
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.29
PHA02633	63	hypothetical protein; Provisional	98.27
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.27
KOG4221|consensus	1381		98.24
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.23
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	98.2
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.18
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.16
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.16
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.14
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.13
KOG4222|consensus	1281		98.13
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.09
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.08
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.05
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.04
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.95
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.94
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.83
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.75
PHA03376	221	BARF1; Provisional	97.75
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.67
smart00406	81	IGv Immunoglobulin V-Type.	97.6
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.59
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.58
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.55
smart00407	75	IGc1 Immunoglobulin C-Type.	97.47
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.43
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.43
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.33
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.31
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.29
KOG1480|consensus	909		97.26
KOG3515|consensus	741		97.14
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.01
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.85
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.79
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.74
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.73
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.69
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.57
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.55
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.52
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.51
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.44
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	96.4
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.31
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.27
PHA02982	251	hypothetical protein; Provisional	96.07
PHA03042	286	CD47-like protein; Provisional	95.99
PHA03283	542	envelope glycoprotein E; Provisional	95.97
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.88
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	95.87
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	95.66
KOG4597|consensus	560		95.0
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	94.73
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.03
PHA03286	492	envelope glycoprotein E; Provisional	93.78
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	93.71
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	93.12
PF01688	161	Herpes_gI: Alphaherpesvirus glycoprotein I; InterP	92.84
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	92.36
PF11141	66	DUF2914: Protein of unknown function (DUF2914); In	92.22
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	91.19
KOG3515|consensus	741		90.53
PHA03282	540	envelope glycoprotein E; Provisional	90.11
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	89.31
PHA03290	357	envelope glycoprotein I; Provisional	88.06
PHA03289	352	envelope glycoprotein I; Provisional	88.01
PHA03281	642	envelope glycoprotein E; Provisional	87.98
PHA03292	413	envelope glycoprotein I; Provisional	87.19
PHA03291	401	envelope glycoprotein I; Provisional	87.18
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	85.43
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	84.65
PHA02914	500	Immunoglobulin-like domain protein; Provisional	83.35
KOG0613|consensus	1205		82.84
PHA03189	348	UL14 tegument protein; Provisional	82.22

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.89  E-value=6.9e-22  Score=102.64  Aligned_cols=67  Identities=24%  Similarity=0.345  Sum_probs=62.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|||.+|..+.++.+...+..+.|.|.+++++|+|.|+|.|.|+.|.+.+++.|.|.++|++.
T Consensus        31 ~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          31 TCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             ceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence            3789999999987788888888888999999999999999999999999999999999999999874

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.81  E-value=1e-18  Score=86.23  Aligned_cols=60  Identities=23%  Similarity=0.360  Sum_probs=54.6

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.++..+.++.+...+..+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus        15 ~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748          15 TVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             eEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            378999999998778888887777889999999999999999999999999999998875

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.78  E-value=1.5e-18  Score=88.24  Aligned_cols=63  Identities=19%  Similarity=0.100  Sum_probs=52.2

Q ss_pred             eEEEeCCEEecc---CCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS---EGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~---~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|||++|..   +.++.+... ...+.|.|.+++..|+|.|+|.|.|.++...+++.|.|.++|
T Consensus        19 ~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          19 FTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             EEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence            689999999962   234443221 234589999999999999999999999999999999999988

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.77  E-value=7.4e-18  Score=85.65  Aligned_cols=60  Identities=22%  Similarity=0.283  Sum_probs=53.1

Q ss_pred             CeEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|+++... .++.+......+.|.|.++++.|+|.|+|.|.|..|.+.+++.|.|
T Consensus        26 ~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   86 (86)
T cd05894          26 TVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV   86 (86)
T ss_pred             eEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence            37899999999754 5787777677789999999999999999999999999999998875

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.77  E-value=1.2e-17  Score=85.17  Aligned_cols=66  Identities=18%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             CeEEEeCCEEeccC-CCEEEEEe--C--CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           1 MFDIFCPRSQVRSE-GNVEIVNV--P--YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         1 ~~~W~k~g~~l~~~-~~~~~~~~--~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .+.|+|++.++... .++.+...  +  ..+.|.|.++..+|+|.|+|.|.|..|..++.+.|.|.++|.+
T Consensus        17 ~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~   87 (88)
T cd05735          17 IVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDP   87 (88)
T ss_pred             EEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCC
Confidence            37899999999643 46655432  1  2368999999999999999999999999999999999999975

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.77  E-value=1e-17  Score=84.99  Aligned_cols=63  Identities=16%  Similarity=0.135  Sum_probs=52.1

Q ss_pred             eEEEeCCEEeccC---CCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSE---GNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~---~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|||.+|...   .++. +......+.|.|.+++..|+|.|+|.|.|.+|..++++.|.|.++|
T Consensus        19 v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          19 FTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             EEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence            6899999998643   2332 2222345689999999999999999999999999999999999987

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.77  E-value=8.4e-18  Score=83.68  Aligned_cols=60  Identities=17%  Similarity=0.202  Sum_probs=50.8

Q ss_pred             CeEEEeCCEEecc-CCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRS-EGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~-~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.+|.. +.++.+.... +...|.|.+++.+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus        14 ~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892          14 KIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             eEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            3789999999974 4677665443 3458999999999999999999999999999999875

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.75  E-value=3.7e-17  Score=82.37  Aligned_cols=59  Identities=15%  Similarity=0.229  Sum_probs=48.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEe-------CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNV-------PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~-------~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      .++|+|||++|..+.++.+...       ...+.|.|.+++..|+|.|+|.|.|.+|.+.+.+.|.
T Consensus        14 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971          14 TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            4799999999987665443221       2356799999999999999999999999999888765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.74  E-value=4.4e-17  Score=83.43  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.++....++.+... ...+.|.|.+++.+|+|.|+|.|.|..|.+...+.|.|
T Consensus        32 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   92 (92)
T cd05737          32 EVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV   92 (92)
T ss_pred             eEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence            3789999999987778777654 34568999999999999999999999999999988875

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.74  E-value=8.4e-17  Score=79.85  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=50.3

Q ss_pred             CeEEEeCCEEecc-CCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRS-EGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~-~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.++.. ..++.+... .+.+.|.|.+++.+|+|.|+|.|.|.+|...+.+.|.|
T Consensus        14 ~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744          14 QIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             eEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            3789999999974 356666543 34567999999999999999999999999999998875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.74  E-value=4.8e-17  Score=82.13  Aligned_cols=63  Identities=16%  Similarity=0.112  Sum_probs=51.2

Q ss_pred             eEEEeCCEEeccCC---CEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEG---NVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~---~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|||.+|....   ++. .......+.|.|.+++..|+|.|+|.|.|..|...+++.|.|.++|
T Consensus        19 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          19 FTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             EEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence            58999999986432   222 1222345689999999999999999999999999999999999987

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.73  E-value=4.7e-17  Score=81.77  Aligned_cols=59  Identities=22%  Similarity=0.342  Sum_probs=47.9

Q ss_pred             CeEEEeCCEEeccCCCEEEE-----EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIV-----NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~-----~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      .++|+|||++|..+.++...     .....+.|.|.++...|+|.|+|.|+|.+|.+..++.+.
T Consensus        14 ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855          14 TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            47999999999876654321     123456899999999999999999999999998888764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.73  E-value=5.6e-17  Score=80.64  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             CeEEEeCCEEecc-CCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRS-EGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~-~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.++.. ..++.+.... +.+.|.|.+++.+|+|.|+|.|.|.+|..++++.|.|
T Consensus        14 ~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893          14 QIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            3789999999974 3566665443 3457999999999999999999999999999999875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.73  E-value=6e-17  Score=84.58  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeC-----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVP-----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~-----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|+|||.+|.......+....     ..+.|.|.++.++|+|.|+|.|.|+.|.++.++.|.|.
T Consensus        35 ~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          35 HINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             ccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence            37899999999855444333321     25789999999999999999999999999999999875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.73  E-value=1.1e-16  Score=80.97  Aligned_cols=59  Identities=25%  Similarity=0.366  Sum_probs=56.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++|.++..+.++.+...+..+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus        32 v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   32 VTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence            78999999999889999998889999999999999999999999999999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.71  E-value=1.1e-16  Score=83.48  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             CeEEEeCCEEeccCCCEEEEE------eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVN------VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~------~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|+|||++|..+.+..+..      ....+.|.|.+++.+|+|.|+|.|.|+.|.++.++.|.|.
T Consensus        34 ~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          34 QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence            478999999998655433321      1235789999999999999999999999999999998874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.71  E-value=1.1e-16  Score=79.23  Aligned_cols=57  Identities=23%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|++.++..+.++.+..   ...|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus        17 ~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852          17 KFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             EEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            378999999988777776643   236999999999999999999999999999999875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.71  E-value=2.4e-16  Score=78.02  Aligned_cols=61  Identities=16%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|..+..+.+.++......+.|.|.+++..|+|.|+|.|.|..|..+.++.|.|.+
T Consensus        15 v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   75 (76)
T cd05736          15 LTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED   75 (76)
T ss_pred             EEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence            6899999999765444444445556899999999999999999999999999999999864

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.70  E-value=4e-16  Score=79.79  Aligned_cols=58  Identities=22%  Similarity=0.373  Sum_probs=52.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+|+|.++..+.++.+......+.|.|.+++.+|+|.|+|.|.|..|..++++.|+
T Consensus        35 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   92 (92)
T cd05747          35 VTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT   92 (92)
T ss_pred             EEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEeC
Confidence            6899999999877788887777778999999999999999999999999999888763

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.70  E-value=3.6e-16  Score=76.72  Aligned_cols=57  Identities=19%  Similarity=0.336  Sum_probs=48.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .++|+|+|.++....++.+....   .|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus        15 ~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723          15 TVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            37899999999877777654432   4778899999999999999999999999999875

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.68  E-value=9.9e-16  Score=80.77  Aligned_cols=65  Identities=14%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             CeEEEeCCEEecc-CCCEEEEEeC----CeEEEEEcCCC-CCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRS-EGNVEIVNVP----YNTKLSIVDIL-RKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~-~~~~~~~~~~----~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      .+.|+|||.+|.. ..++.+....    ..+.|.|.++. .+|+|.|+|.|.|..|.+...+.|.|.++|+
T Consensus        39 ~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p~  109 (109)
T cd05773          39 QFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRPD  109 (109)
T ss_pred             EEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence            3789999999974 3455433221    14689999997 5899999999999999999999999999985

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.68  E-value=3e-16  Score=76.66  Aligned_cols=53  Identities=15%  Similarity=0.284  Sum_probs=44.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|+|||++|...        ...+.|.|.++..+|+|.|+|.|.|+.|..+.++.|.+.
T Consensus        14 ~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863          14 EFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             EEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            37899999999631        234589999999999999999999999988777777654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.67  E-value=1.3e-15  Score=78.19  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             eEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++... .++  ......+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..+
T Consensus        35 v~W~k~g~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~   95 (95)
T cd05730          35 MTWTKDGEPIESGEEKY--SFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFAK   95 (95)
T ss_pred             EEEEECCEECcCCCCEE--EEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEeC
Confidence            7899999999754 333  33344567999999999999999999999999999999999754

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.67  E-value=6.5e-16  Score=76.26  Aligned_cols=56  Identities=20%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++....++.+..   ...|.|.+++..|+|.|+|.|.|..|...+.+.|.|
T Consensus        19 i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745          19 IAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             EEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            78999999998655554422   247999999999999999999999999999998875

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.67  E-value=7.9e-16  Score=79.68  Aligned_cols=61  Identities=20%  Similarity=0.445  Sum_probs=49.1

Q ss_pred             CeEEEe-CCEEecc-CCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCC-cceeEEEEEEEE
Q psy7044           1 MFDIFC-PRSQVRS-EGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENAS-GKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k-~g~~l~~-~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g~~~~~~~l~V~   61 (68)
                      .+.|++ +|.++.. +.++.+... +..+.|.|.+++.+|+|.|+|.|.|.+ |..++++.|.|+
T Consensus        32 ~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v~   96 (96)
T cd05865          32 DISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKIF   96 (96)
T ss_pred             EEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEEC
Confidence            378998 8887765 345555433 335789999999999999999999997 888999998874

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.66  E-value=9.6e-16  Score=75.35  Aligned_cols=56  Identities=25%  Similarity=0.324  Sum_probs=46.3

Q ss_pred             eEEEeCCEEeccCCCE---EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV---EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~---~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|+|+|+++....+.   .+......+.|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus        16 ~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750          16 FKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             EEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            6899999999855433   2444455678999999999999999999999999888765

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=9.1e-16  Score=74.87  Aligned_cols=55  Identities=22%  Similarity=0.241  Sum_probs=47.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+|+|.++..+.++.+..   ...|.|.+++.+|+|.|+|.|.|..|.+++++.|+
T Consensus        15 i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt   69 (69)
T cd05746          15 ITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS   69 (69)
T ss_pred             EEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence            78999999998777766532   34799999999999999999999999999988763

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.66  E-value=8.3e-16  Score=75.65  Aligned_cols=57  Identities=19%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|++.++...+++.+...   ..|.|.++++.|+|.|+|.|.|..|..++++.|.|
T Consensus        17 ~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969          17 TISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             EEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            3789999999987777765322   36999999999999999999999999999999875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.66  E-value=9.9e-16  Score=75.27  Aligned_cols=57  Identities=16%  Similarity=0.278  Sum_probs=46.4

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|+|||.+|..+.++.    ...+.|.|.+++..|+|.|+|.|.|..|..+..+.+.+.
T Consensus        14 ~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976          14 EIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             EEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            368999999998654432    234679999999999999999999999988777777654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.66  E-value=7.1e-16  Score=75.83  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|||.+|....++  .   ..+.|.|.++..+|+|.|+|.|.|..|..+....+.+
T Consensus        14 ~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864          14 EVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            37899999999754332  1   2347999999999999999999999997766655554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.66  E-value=2.9e-15  Score=75.27  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++..+.+. ..........|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus        26 i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   85 (85)
T cd05857          26 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   85 (85)
T ss_pred             EEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence            7899999999865443 1222334567999999999999999999999999999998875

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=3.5e-15  Score=76.00  Aligned_cols=60  Identities=17%  Similarity=0.152  Sum_probs=49.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+++|.++..............+.|.|.+++..|.|.|+|.|.|..|...+.+.|.|
T Consensus        31 ~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v   90 (90)
T cd04972          31 KVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV   90 (90)
T ss_pred             eEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence            378999999987554443444455678999999999999999999999999999998875

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.65  E-value=2.7e-15  Score=74.72  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|++++.++....++.+....+.+.|.|.+++.+|+|.|+|.|.|..|...+.+.+.
T Consensus        18 v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743          18 INWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             EEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            7899999999877788777666678999999999999999999999999886665544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.65  E-value=2.9e-15  Score=74.55  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=46.7

Q ss_pred             CeEEEeCCEEeccCC-CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEG-NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      .+.|+|+|.+|.... ++.+.  .....|.|.+++.+|+|.|.|.|.|.+|..  .+.+.|.|.|
T Consensus        14 ~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d   76 (77)
T cd05760          14 TYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID   76 (77)
T ss_pred             cEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence            378999999997543 33332  234589999999999999999999999977  4466776665

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.65  E-value=3.3e-15  Score=76.88  Aligned_cols=59  Identities=24%  Similarity=0.420  Sum_probs=49.7

Q ss_pred             eEEEe-CCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           2 FDIFC-PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         2 ~~W~k-~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      +.|++ +|.++..+.++.+......+.|.|.+++.+|+|.|+|.|.|..|.. ..++.|.|
T Consensus        31 v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          31 IDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            68998 5888887778877766667799999999999999999999999976 66666665

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.65  E-value=2.9e-15  Score=76.81  Aligned_cols=59  Identities=20%  Similarity=0.288  Sum_probs=50.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++....++.+....+ .+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus        33 i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~   92 (92)
T cd05891          33 VIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence            68999999998777776654433 457999999999999999999999999999998875

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.65  E-value=2e-15  Score=74.43  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=48.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+++|.++...... .........|.|.++++.|+|.|+|.|.|..|...+.+.|.|.
T Consensus        18 i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978          18 ITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             EEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            7899999999754332 1223334679999999999999999999999999999999874

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.64  E-value=2.5e-15  Score=74.67  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=46.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .++|+|+|+++...........+ ...|.|.+++..|+|.|+|.|+|..|...+.+.|.|+
T Consensus        17 ~i~W~k~g~~i~~~~~~~~~~~~-~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~   76 (76)
T cd05868          17 SISWLTNGVPIEIAPTDPSRKVD-GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL   76 (76)
T ss_pred             eEEEEECCEEccccCCCceEEec-CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence            37899999999643221111122 2368999999999999999999999999999999874

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.64  E-value=3.1e-15  Score=74.04  Aligned_cols=57  Identities=16%  Similarity=0.323  Sum_probs=46.1

Q ss_pred             eEEEeCCEEeccC----CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSE----GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~----~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|+|+++...    .++.+......+.|.|.+++.+|+|.|+|.|.|+.|...+++.+
T Consensus        16 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~   76 (76)
T cd05895          16 FKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV   76 (76)
T ss_pred             eEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence            6899999999632    23444444556789999999999999999999999998887753

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.64  E-value=4e-15  Score=73.73  Aligned_cols=58  Identities=16%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      ++|+|+|.++...... ....  ....|.|.++++.|+|.|+|.|.|..|...+.+.|.|.
T Consensus        18 i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   76 (76)
T cd05867          18 ITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV   76 (76)
T ss_pred             EEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence            7899999999753211 1221  23469999999999999999999999999999998873

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.63  E-value=2e-15  Score=75.45  Aligned_cols=55  Identities=20%  Similarity=0.320  Sum_probs=47.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|||.+|....++.+.  .  ..|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus        25 v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V   79 (79)
T cd04973          25 INWTKDGVQLGENNRTRIT--G--EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV   79 (79)
T ss_pred             EEEeeCCcCCCCCceEEEe--C--CEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence            7899999999876676653  2  37999999999999999999999999888887765

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.62  E-value=3.9e-15  Score=73.51  Aligned_cols=59  Identities=25%  Similarity=0.348  Sum_probs=45.8

Q ss_pred             CeEEEeCCEEec---cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVR---SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~---~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|+|+|.+..   ...++.+.  ...+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|+
T Consensus        14 ~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   75 (75)
T cd05763          14 QIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL   75 (75)
T ss_pred             EEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence            378999987532   12344332  233479999999999999999999999999999999873

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.62  E-value=8.2e-15  Score=75.59  Aligned_cols=59  Identities=20%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             eEEEeCCEEeccC-----CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSE-----GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~-----~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      ++|++++.++...     .++.+......+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus        34 v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          34 ITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            7899999887532     2344444444578999999999999999999999999999988875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.61  E-value=5.5e-15  Score=72.50  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|++.++... +...  ......|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus        14 ~v~W~k~~~~~~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876          14 EVHWDRIDGPLSPN-RTKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             eEEEEECCcCCCCC-ceeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            37899999988643 2222  233468999999999999999999999999999999887

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.61  E-value=5.6e-15  Score=74.68  Aligned_cols=55  Identities=27%  Similarity=0.388  Sum_probs=47.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++....++.+..    ..|.|.+++..|+|.|+|.|.|..|...+++.|.|
T Consensus        31 v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          31 YRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV   85 (85)
T ss_pred             EEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence            78999999998666665432    37999999999999999999999999999998875

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=6.4e-15  Score=71.70  Aligned_cols=55  Identities=29%  Similarity=0.367  Sum_probs=45.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|++..+.. .++.+.   ....|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        15 v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725          15 VLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             EEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            789999888763 455544   2347999999999999999999999999999988875

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.60  E-value=1.2e-14  Score=74.47  Aligned_cols=60  Identities=17%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             CeEEEeCCEEeccC-----CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSE-----GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~-----~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|++++..+...     .++.+......+.|.|.+++.+|+|.|+|.|.|..|.++.++.|.|
T Consensus        32 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          32 EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            37899999777532     2444444445678999999999999999999999999999888765

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.58  E-value=2e-14  Score=70.98  Aligned_cols=56  Identities=21%  Similarity=0.307  Sum_probs=45.1

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      +.|+|++.++..  ..++..  .. ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        15 v~W~k~~~~~~~~~~~~~~~--~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          15 ITWFKDFLPVDTTSNGRIKQ--LR-SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EEEEECCEECccCCCCCEEE--cC-CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            789999999873  345543  22 3369999999999999999999999975 67788776

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.58  E-value=1.1e-14  Score=74.16  Aligned_cols=56  Identities=21%  Similarity=0.337  Sum_probs=46.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|++.++....++.+    ....|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        32 ~v~W~k~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          32 VIRWRKILEPMPATAEISM----SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEEEEECCcCCCCCCEEec----CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            3789999998875443322    2347999999999999999999999999999999887

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=2.5e-14  Score=69.57  Aligned_cols=57  Identities=19%  Similarity=0.355  Sum_probs=46.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|++.++... +...  ......|.|.+++..|+|.|+|.|.|..|..+..+.|.|
T Consensus        14 ~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731          14 EISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             eEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            37899999988642 3222  234468999999999999999999999999999998876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.56  E-value=3.9e-14  Score=72.15  Aligned_cols=60  Identities=18%  Similarity=0.173  Sum_probs=47.8

Q ss_pred             eEEEeCCEEe--------ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQV--------RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l--------~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|..+        ....++.+..   ...|.|.+++.+|+|.|.|.|.|..|...+.+.|.|.+.+
T Consensus        18 v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~   85 (90)
T cd05726          18 IFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVI   85 (90)
T ss_pred             EEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecc
Confidence            6899998753        1234554422   2369999999999999999999999999999999998753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.55  E-value=7.1e-14  Score=72.18  Aligned_cols=60  Identities=17%  Similarity=0.244  Sum_probs=47.3

Q ss_pred             CeEEEe--CCEEecc-----CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFC--PRSQVRS-----EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k--~g~~l~~-----~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|  +|.++..     ..++.+......+.|.|.+++.+|+|.|.|.|.|..|....++.|.|
T Consensus        32 ~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          32 EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            378999  4555542     24666654445678999999999999999999999999998888764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.55  E-value=4.2e-14  Score=70.26  Aligned_cols=58  Identities=17%  Similarity=0.189  Sum_probs=46.7

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.++.......  .......|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus        25 ~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856          25 DITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             cEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            378999999887443322  2334568999999999999999999999999988888764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.55  E-value=7.1e-14  Score=71.64  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      +.|+|+|.++.. .++.+.  .....|.|.+++++|+|.|+|.|.|..|.. +..+.|.|
T Consensus        34 i~W~kng~~l~~-~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          34 IWWVNNGSLLVP-PRLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEEECCEECCC-CCEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            789999999874 454443  334579999999999999999999999976 44667766

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.53  E-value=3.8e-14  Score=73.08  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=44.7

Q ss_pred             eEEEeCCEEeccC--CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSE--GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++...  .+.++...  ...|.|.+++.+|+|.|.|.+.|..|..+..+.|.|
T Consensus        36 v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          36 LTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV   94 (94)
T ss_pred             EEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence            7899999775421  22233222  347999999999999999999999999999998875

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.53  E-value=1.2e-13  Score=67.85  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=44.7

Q ss_pred             eEEEe-CCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFC-PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k-~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|++ ++..+....+..+..   ...|.|.++..+|+|.|+|.|.|+.|.+++.+.|.|
T Consensus        18 v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764          18 IHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             EEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            68997 677776555443322   236999999999999999999999999999988875

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.53  E-value=1.8e-13  Score=70.38  Aligned_cols=56  Identities=16%  Similarity=0.220  Sum_probs=43.7

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|||.++....+. +.   ....|.|.+++.+|+|.|+|.|.|..+.....+...+
T Consensus        31 ~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~   86 (92)
T cd05757          31 PVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI   86 (92)
T ss_pred             cEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence            37899999999854433 22   3458999999999999999999999997766554443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.52  E-value=1.8e-13  Score=70.12  Aligned_cols=60  Identities=20%  Similarity=0.405  Sum_probs=46.1

Q ss_pred             CeEEEe-CCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044           1 MFDIFC-PRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k-~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V   60 (68)
                      .+.|++ +|.++....++.+... ...+.|.|.+++.+|+|.|+|.|.|..| ..++++.|.|
T Consensus        30 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          30 DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            378998 7777765556554433 3467899999999999999999999976 4577777754

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.52  E-value=8.2e-14  Score=70.57  Aligned_cols=57  Identities=25%  Similarity=0.264  Sum_probs=46.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|+|+|..+.......    .....|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus        32 ~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (88)
T cd04968          32 QIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ   88 (88)
T ss_pred             EEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence            378999988776433322    123579999999999999999999999999999998873

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.51  E-value=1.3e-13  Score=70.24  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=34.4

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~   90 (90)
T cd05858          54 MEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTVL   90 (90)
T ss_pred             eeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEEC
Confidence            3689999999999999999999999999999999873

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.50  E-value=1.5e-13  Score=69.04  Aligned_cols=56  Identities=21%  Similarity=0.325  Sum_probs=44.0

Q ss_pred             eEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      +.|+|+|.++.. ..++.+..   ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        29 i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          29 VSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             EEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            789999999975 34554432   3479999999999999999999999976 44566543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.49  E-value=2.2e-13  Score=67.72  Aligned_cols=54  Identities=19%  Similarity=0.205  Sum_probs=39.4

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCC----CCCEEEEEEEEcCCcceeE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILR----KNSGVYRIKAENASGKDEA   54 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~----~d~G~Y~c~a~n~~g~~~~   54 (68)
                      .++|+|||.++.......+........|.|.++..    +|+|.|+|.|.|..|...+
T Consensus        14 ~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733          14 TFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             eEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            37899999998643322233333445788888754    7899999999999997644

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.49  E-value=3.5e-13  Score=65.93  Aligned_cols=53  Identities=19%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      .+.|+|+|.++....++.+    ....|.|.+++  |+|.|+|.|.|..|..++++.|+
T Consensus        17 ~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739          17 YVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             EEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence            3789999999875544322    23478999874  89999999999999999988763

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.48  E-value=8.1e-13  Score=68.21  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=46.3

Q ss_pred             eEEEeCCEEeccC--CCEEEEEe----CCeEEEEEcCCCCC-CCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSE--GNVEIVNV----PYNTKLSIVDILRK-NSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~--~~~~~~~~----~~~~~l~I~~~~~~-d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|++++.+|...  .++.+...    ...+.|.|.+++.+ |.|.|.|.|.|..|.+.+.+.|
T Consensus        34 v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          34 IVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             eEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence            7899999998743  56766543    22468999999995 5999999999999999988876

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.48  E-value=4.9e-13  Score=66.46  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=33.5

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|.|.+++.+|+|.|.|.|.|..|...+.+.|.|
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            457999999999999999999999999999999875

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.47  E-value=3e-13  Score=68.98  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      ...|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~   90 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL   90 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence            3579999999999999999999999999999999874

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.45  E-value=7.4e-13  Score=65.43  Aligned_cols=53  Identities=11%  Similarity=0.050  Sum_probs=40.2

Q ss_pred             CeEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           1 MFDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         1 ~~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      .+.|+|||.++... .++.  . . ...|.|.+++.+|+|.|+|.|.|..........
T Consensus        14 ~v~W~kdg~~l~~~~~~~~--~-~-~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~   67 (72)
T cd07702          14 EVIWLKDGLPAAEKCSRYH--V-D-GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLT   67 (72)
T ss_pred             eEEEEECCEECCCCCcEEE--e-C-CCEEEECcCCHHHCEEEEEEEEccccceEeeEE
Confidence            37899999999754 2332  2 2 237999999999999999999999775544433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.44  E-value=6.2e-13  Score=66.85  Aligned_cols=59  Identities=15%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             eEEEeCCEEeccCCC-----EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGN-----VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-----~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|.+++..+.....     .........+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus        20 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          20 FQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            789998876642211     10111123568999999999999999999999999999998876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.44  E-value=1.6e-12  Score=64.77  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=37.9

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCC----CCCEEEEEEEEcCCcceeEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILR----KNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~----~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      .++|+|||.++...+...+......+.|.|..+..    .|.|.|+|.|.|..|...+.
T Consensus        14 ~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874          14 SFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             eEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            37899999998533322223223345677776654    37899999999999987553

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.43  E-value=2.5e-12  Score=66.15  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=40.9

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEA-DVEI   58 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~-~~~l   58 (68)
                      .+.|+|||.+|...........+  ..|.|.++. ..|+|.|+|.|.|..|...+ .+.|
T Consensus        35 ~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          35 TYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             EEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            37899999999754433333222  368898875 69999999999999998744 4443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.43  E-value=2.7e-12  Score=63.89  Aligned_cols=53  Identities=17%  Similarity=0.088  Sum_probs=38.2

Q ss_pred             CeEEEeCCEEec--cCCCEEEEEeCCeEEEEEcCCC----CCCCEEEEEEEEcCCcceeEE
Q psy7044           1 MFDIFCPRSQVR--SEGNVEIVNVPYNTKLSIVDIL----RKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         1 ~~~W~k~g~~l~--~~~~~~~~~~~~~~~l~I~~~~----~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      .++|+|+|.++.  ...++.+.  .....|.|..+.    .+|+|.|+|.|.|..|...+.
T Consensus        14 ~v~W~k~g~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875          14 TFQWTRNGKFFNVAKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             EEEEEECCEEccCcCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            378999999874  33455443  233578888764    247999999999999977544

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.41  E-value=5.1e-12  Score=62.90  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=47.2

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|++.++........ ........|.|.+++.+|+|.|.|.|.|..|..+.++.|.|
T Consensus        26 v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v   85 (85)
T cd05729          26 ITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV   85 (85)
T ss_pred             EEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence            689999999875444432 22234567999999999999999999999999998888764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.41  E-value=4.3e-12  Score=64.78  Aligned_cols=59  Identities=19%  Similarity=0.179  Sum_probs=40.2

Q ss_pred             eEEEeCCEEeccC----CCEEEE-EeCCeEEEEE--cCCCCCCCEEEEEEEEcCCcc-eeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSE----GNVEIV-NVPYNTKLSI--VDILRKNSGVYRIKAENASGK-DEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~----~~~~~~-~~~~~~~l~I--~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V   60 (68)
                      +.|+|+|.++...    ....+. ..+....+.+  ..++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        33 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          33 IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            7899999999751    111222 2222233333  334799999999999999998 577788776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>KOG3513|consensus

Probab=99.40  E-value=2.2e-12  Score=87.00  Aligned_cols=63  Identities=24%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             CeEEEeCCEEeccCCC---EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC-CcCC
Q psy7044           1 MFDIFCPRSQVRSEGN---VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL-KENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~---~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~-p~~~   67 (68)
                      .+.|+|||++|...++   +.+...    .|.|.+++.+|+|.|+|.|+|.+|...+.+.|.|... |.++
T Consensus       362 ~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~  428 (1051)
T KOG3513|consen  362 TVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFP  428 (1051)
T ss_pred             ceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCC
Confidence            3789999999986666   665443    7999999999999999999999999999999999986 6654

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.38  E-value=1.3e-11  Score=63.45  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=39.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEA-DVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~-~~~l   58 (68)
                      ++|++||.+|............  ..|.|.+.. ..|+|.|+|.|.|.+|...+ .+.|
T Consensus        36 i~W~~~g~~l~~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          36 YRWKMNGTEIKFAPESRYTLVA--GNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEECCEECccCCCceEEEEC--CeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            7899999999743322222222  368888865 59999999999999997754 5554

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>KOG3513|consensus

Probab=99.38  E-value=1.2e-12  Score=88.16  Aligned_cols=62  Identities=23%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|.|++..+..++|+.+...   ..|.|.+++++|+|.|+|.|+|.+|+++.++.|.|.+++..
T Consensus       458 ~~W~k~~~~~~~~~r~~i~ed---GtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri  519 (1051)
T KOG3513|consen  458 VSWLKGGEKLLQSGRIRILED---GTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI  519 (1051)
T ss_pred             EEEEcCCcccccCceEEECCC---CcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE
Confidence            789999997777888877443   37999999999999999999999999999999999987643

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.37  E-value=3.7e-12  Score=65.94  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      .++|+||+.+|....+. ...-.+.+.|.|.++..+|+|.|+|.|.|.+|...
T Consensus        31 ~v~WYKd~~~l~~~~~~-~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897          31 ELQWYKDSVLLDKDNEK-FYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             cEEEccCCEECcCCCcc-eEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            37899999999744322 12212345799999999999999999999987653

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.35  E-value=1e-11  Score=62.72  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=43.3

Q ss_pred             eEEEeCCEEeccCC----CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEG----NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~----~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~   62 (68)
                      +.|+++|+......    +..+......+.|.|.+++..|+|.|.|.|.|..+  ....++.|.|.+
T Consensus        18 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~~   84 (84)
T cd05861          18 FSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVHE   84 (84)
T ss_pred             EEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEeC
Confidence            68998876432111    11111112257899999999999999999999987  667788888764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.35  E-value=9.8e-12  Score=63.73  Aligned_cols=57  Identities=16%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             CeEEEeCCEEeccCCC--EEEEEeCCeEEEEEcCC-----CCCCCEEEEEEEEcC-Ccce-eEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGN--VEIVNVPYNTKLSIVDI-----LRKNSGVYRIKAENA-SGKD-EADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~--~~~~~~~~~~~l~I~~~-----~~~d~G~Y~c~a~n~-~g~~-~~~~~l~V   60 (68)
                      .+.|+|||.++....+  ..+..  + ..|.|.++     ++.|.|.|+|.|.|. .|.. +..+.|+|
T Consensus        30 ~i~W~k~g~~l~~~~~~~~~~~~--~-~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          30 KIEWKKDGVLLNLVSDERRQQLP--N-GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EEEEEECCeECccccCcceEEcc--C-CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            3789999999975433  33222  2 23555555     689999999999999 9977 55677664

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.34  E-value=2e-11  Score=63.50  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeC----CeEEEEEcCCCCCC-CEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVP----YNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~----~~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|..++..|..  ..++.+....    ..+.|.|.++.+.| .|.|.|.|.|.+|.++..+.|
T Consensus        34 i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          34 IAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence            678888888764  3688877653    67899999998877 799999999999999998876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.34  E-value=2.6e-11  Score=62.33  Aligned_cols=54  Identities=17%  Similarity=0.194  Sum_probs=40.6

Q ss_pred             CeEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044           1 MFDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEA-DVEI   58 (68)
Q Consensus         1 ~~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~-~~~l   58 (68)
                      .++|+|+|.++.. ..++.+.  .  ..|.|.++. ..|+|.|.|.|.|..|...+ .+.|
T Consensus        35 ~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          35 IYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            3789999999863 3444332  2  479999985 58999999999999998744 4554

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.31  E-value=1.1e-11  Score=62.83  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=45.3

Q ss_pred             eEEEeCCEEeccC---C--CEEE-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSE---G--NVEI-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~---~--~~~~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|...+..+...   .  +... ......+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.+
T Consensus        20 ~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~   86 (86)
T cd05862          20 FQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE   86 (86)
T ss_pred             EEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence            5898877644211   1  1111 1123467899999999999999999999999999999999874

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.30  E-value=2e-11  Score=62.25  Aligned_cols=53  Identities=11%  Similarity=0.013  Sum_probs=40.6

Q ss_pred             eEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC---cceeEEEEE
Q psy7044           2 FDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS---GKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~---g~~~~~~~l   58 (68)
                      +.|+|||.+|..+ .++.+  .++  .|.|.+++.+|+|.|+|.|.+..   |..+.-+.+
T Consensus        27 i~W~~ng~~i~~~~~r~~~--~~~--~L~I~nv~~~DsG~Y~C~a~e~~~~~~~~~~~~~~   83 (87)
T cd05873          27 VVWKFDGKVLTPESAKYLL--YRD--GLLIFNASEADAGRYQCLSVEKSKAKLFTQTVAKY   83 (87)
T ss_pred             EEEEECCEECCCCCceEEE--ECC--cEEEeCCCHHHCEEEEEEEEecccCceeEeEEEee
Confidence            7899999999865 34443  222  58999999999999999999987   655554443

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.30  E-value=1.3e-11  Score=62.64  Aligned_cols=60  Identities=13%  Similarity=0.147  Sum_probs=44.3

Q ss_pred             CeEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~   62 (68)
                      .+.|+|++..+....  ..++....  ..|.|.+++.+|+|.|.|.|.|..+ ...++..|.|.+
T Consensus        26 ~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          26 SVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             eEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence            368999998886432  12222222  2489999999999999999997766 557778888875

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.29  E-value=2.8e-11  Score=60.14  Aligned_cols=57  Identities=25%  Similarity=0.379  Sum_probs=39.9

Q ss_pred             CeEEEeCCEEec--------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           1 MFDIFCPRSQVR--------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~--------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      .+.|+|++....        ...++.+..   ...|.|.+++.+|+|.|.|.|.|..|.+ +..+.|.|
T Consensus        14 ~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          14 TIVWKHSKGRGHPQHTHTCCLAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             EEEEEECCCccccccccccccCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            378999743211        223444322   2479999999999999999999999977 55555543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.29  E-value=3.8e-11  Score=61.13  Aligned_cols=51  Identities=20%  Similarity=0.258  Sum_probs=37.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCC-CCCEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILR-KNSGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~-~d~G~Y~c~a~n~~g~~~~   54 (68)
                      ++|+|+|.++............  ..|.|.++.. .|+|.|+|.|.|..|...+
T Consensus        36 i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          36 YRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEECCEECCCCCCCCEEEEC--CEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            7899999999533222222222  3688988875 8999999999999997644

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>smart00409 IG Immunoglobulin

Probab=99.27  E-value=1.8e-10  Score=56.19  Aligned_cols=59  Identities=22%  Similarity=0.372  Sum_probs=50.4

Q ss_pred             eEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++ +.++....++.+........|.|.+++..|+|.|.|.+.|..+.....+.|.|
T Consensus        26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00409       26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            679998 88887667777766655678999999999999999999999998887788776

>smart00410 IG_like Immunoglobulin like

Probab=99.27  E-value=1.8e-10  Score=56.19  Aligned_cols=59  Identities=22%  Similarity=0.372  Sum_probs=50.4

Q ss_pred             eEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++ +.++....++.+........|.|.+++..|+|.|.|.+.|..+.....+.|.|
T Consensus        26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V   85 (86)
T smart00410       26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV   85 (86)
T ss_pred             EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence            679998 88887667777766655678999999999999999999999998887788776

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>KOG4194|consensus

Probab=99.23  E-value=2e-11  Score=79.39  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             CeEEEeCCEE-ec--cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQ-VR--SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~-l~--~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|.|+|-+ .+  ...|.++...++  .+.|.|++.+|.|.|+|.|.|.+|+.++.+.|+|.+.|.++
T Consensus       643 eIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~  710 (873)
T KOG4194|consen  643 EIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFS  710 (873)
T ss_pred             ceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCccc
Confidence            3789998764 33  334445443333  68999999999999999999999999999999999999875

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.21  E-value=5.3e-11  Score=59.83  Aligned_cols=51  Identities=20%  Similarity=0.255  Sum_probs=41.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|++++..+..  +.    ......|.|.+++.+|+|.|.|.|.|..|..++.+.|
T Consensus        34 i~W~~~~~~~~~--~~----~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          34 LVWTRVGGGLPS--RA----MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EEEEECCCcCCC--cc----cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            789999977642  21    1123479999999999999999999999999998876

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.18  E-value=1.2e-10  Score=58.54  Aligned_cols=49  Identities=14%  Similarity=0.205  Sum_probs=36.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l   58 (68)
                      +.|+|||.++..  +.    ....+.|.|.++  .|+|.|.|.|.|.+|...+ .+.|
T Consensus        31 I~W~k~g~~l~~--~~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          31 ILWWQGGSPLGD--PP----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             EEEEECCEECCC--CC----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            789999999974  11    122357999887  4789999999999997654 4443

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.16  E-value=1.9e-10  Score=60.34  Aligned_cols=57  Identities=12%  Similarity=0.111  Sum_probs=43.7

Q ss_pred             eEEEeCCEEeccCCC-----EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGN-----VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-----~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++.....     .++...  ...|-|.+++.+|+|.|+|++.|...-....+.|+|
T Consensus        43 v~WyK~~~~~~~~~~~~~~~~Ri~~~--~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          43 LMWYKSSGDGEEPIEIIFDGVRMSKE--EDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEEECCCCCCCCCcccccceeEEEe--CCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence            689999876654331     123222  347999999999999999999999988888887765

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.14  E-value=3.1e-10  Score=66.51  Aligned_cols=49  Identities=14%  Similarity=0.224  Sum_probs=40.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|+|||++|..+.++.+.  .+...|.|.+++.+|+|.|+|.|....+..
T Consensus       166 I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~  214 (227)
T PHA02826        166 LTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNSN  214 (227)
T ss_pred             EEEEECCEECCCCCCEEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECCE
Confidence            7899999999866776554  344589999999999999999999876433

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.12  E-value=3.2e-10  Score=58.09  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEEEEc
Q psy7044          26 TKLSIVDILRKNSGVYRIKAE-NASGKDEADVEITVLI   62 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~V~~   62 (68)
                      ..|.|.+++++|+|.|.|.|. |..+...+.++|.|.+
T Consensus        53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~   90 (91)
T cd05871          53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE   90 (91)
T ss_pred             CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence            359999999999999999998 6777778889999875

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG4221|consensus

Probab=99.11  E-value=3.7e-10  Score=77.29  Aligned_cols=66  Identities=23%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN   68 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~~   68 (68)
                      .|.|++||++|.-.. +++... +.+.|.|.+++..|+|.|+|+|.|......++++|.|..+|.+++
T Consensus       268 ~v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~  333 (1381)
T KOG4221|consen  268 SVKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTK  333 (1381)
T ss_pred             ceEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCC
Confidence            378999999998433 444433 345799999999999999999999777777788888999898764

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.10  E-value=1.6e-10  Score=57.70  Aligned_cols=36  Identities=14%  Similarity=0.259  Sum_probs=30.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|+|||.+|..          ....|.|.++ ++|+|.|+|.|.|.
T Consensus        33 ~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          33 TQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             EEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            689999998842          1246899999 99999999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.10  E-value=2.2e-10  Score=59.40  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=37.5

Q ss_pred             eEEEeCCEEe--ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQV--RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l--~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|++.++  ....+..+..  ....|.|.+++.+|+|.|.|.|+|.+...
T Consensus        36 ~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          36 YRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             EEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            6899999875  3334433322  23479999999999999999999998765

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.09  E-value=2.6e-10  Score=57.48  Aligned_cols=50  Identities=22%  Similarity=0.170  Sum_probs=38.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~   59 (68)
                      +.|+|+|..+..        ....+.|.|.+++.+|+|.|.|.|.|..|.. +..+.|.
T Consensus        32 ~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~   82 (83)
T cd05753          32 VTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT   82 (83)
T ss_pred             EEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence            689999987752        1123579999999999999999999999954 3334443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.09  E-value=1.5e-09  Score=55.94  Aligned_cols=58  Identities=19%  Similarity=0.235  Sum_probs=40.5

Q ss_pred             eEEEeC--------CEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCP--------RSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~--------g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|++.        +......+|+.+... .....|.|.+++.+|+|.|.|.+.+..+. ...+.|.|
T Consensus        29 v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l~v   95 (95)
T cd07701          29 LQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK-TSKAYLTV   95 (95)
T ss_pred             EEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc-cEEEEEEC
Confidence            679763        333333467665332 34578999999999999999999985443 67777664

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.08  E-value=5.8e-10  Score=51.81  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +.|++++..+. . ...  .......|.|.+++..|+|.|+|.+.|..|
T Consensus        19 v~W~~~~~~~~-~-~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       19 ITWLKDGKPLP-E-SNR--LSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             EEEEECCEECC-C-CCE--EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            68999999887 2 222  233456899999999999999999999876

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.07  E-value=1.4e-09  Score=55.23  Aligned_cols=56  Identities=14%  Similarity=0.090  Sum_probs=42.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|++||.++..++++.....+    |.|.+++.+|+|.|.|.+. +.|..+..+.+.+.
T Consensus        26 ~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~   81 (85)
T cd05872          26 SPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLN   81 (85)
T ss_pred             cEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEE
Confidence            37899999999876666544322    7799999999999999976 77877665554443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.07  E-value=1.5e-09  Score=66.28  Aligned_cols=57  Identities=14%  Similarity=0.205  Sum_probs=43.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|....   +. . ..+..+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|...
T Consensus        63 i~W~K~g~~~~---~~-~-~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~  119 (326)
T PHA02785         63 ILWEKRGADND---RI-I-PIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSV  119 (326)
T ss_pred             EEEEECCCccc---eE-E-EccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEec
Confidence            78999985422   11 1 1223345779999999999999999999998888898888754

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.03  E-value=3.8e-09  Score=54.39  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +...|.|.+++.+|+|.|.|.+.|..+..++.+.|.|
T Consensus        63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            4578999999999999999999999998888888876

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.02  E-value=2.5e-09  Score=62.73  Aligned_cols=40  Identities=15%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      ...|.|.+++++|+|.|+|.|.|..|..+..+.|.|...+
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~  136 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT  136 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC
Confidence            3579999999999999999999999998999999886543

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.95  E-value=1.1e-08  Score=53.47  Aligned_cols=60  Identities=13%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             eEEEeCCEEeccCCC--EEEEE---eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGN--VEIVN---VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~--~~~~~---~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|.+++.++.....  +..+.   ..+.+.|.+..++.+|+|.|+|.|.|+.+..+.++.|.|.
T Consensus        36 ~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          36 QQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             eEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence            689999998753322  22221   1245889999999999999999999999999999999874

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.93  E-value=2.4e-08  Score=51.57  Aligned_cols=58  Identities=16%  Similarity=0.188  Sum_probs=39.5

Q ss_pred             eEEEeCCEEe--------ccCCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQV--------RSEGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l--------~~~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|++..+        ....++.+.... ....|.|.+++.+|+|.|+|.+.. .-...+.+.|.|
T Consensus        29 v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~v   95 (95)
T cd05882          29 LQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVTV   95 (95)
T ss_pred             EEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEEC
Confidence            7898887543        123455543333 357899999999999999999988 224455555543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.92  E-value=1.8e-08  Score=51.51  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=33.3

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVL   61 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~   61 (68)
                      +...|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|+
T Consensus        60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence            456899999999999999999875 77889999998874

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>KOG4222|consensus

Probab=98.92  E-value=2.2e-09  Score=73.25  Aligned_cols=63  Identities=13%  Similarity=0.144  Sum_probs=50.5

Q ss_pred             eEEEeCCEEec--cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVR--SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~--~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~~~   67 (68)
                      +.|.|+|+++.  ..+++.+..   ...|.|.++..+|.|.|.|+|.|.+|.+ +..++|.|.++|.+.
T Consensus       164 vSw~Kdg~pl~~~~~~~~~lis---gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~  229 (1281)
T KOG4222|consen  164 VSWVKDGKPLDHYDVPIIALIS---GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW  229 (1281)
T ss_pred             ceeecCCCccccccceeEEEec---CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccc
Confidence            68999999997  323333222   2369999999999999999999999976 567999999999764

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.91  E-value=1.3e-08  Score=62.27  Aligned_cols=52  Identities=10%  Similarity=0.135  Sum_probs=38.2

Q ss_pred             eEEEeCCEEeccC-----CCEEEEEeC--------CeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSE-----GNVEIVNVP--------YNTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~-----~~~~~~~~~--------~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      +.|+|||.+|...     .++......        ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus       255 v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        255 VFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             EEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            6899999998642     133322211        135799999999999999999999996543

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.91  E-value=1.7e-08  Score=51.63  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .|+.+... .....|.|.+++.+|+|.|.|.+.+... .++.+.|+|
T Consensus        50 ~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v   95 (95)
T cd05717          50 NRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV   95 (95)
T ss_pred             CcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence            46655322 2346799999999999999999998764 466666654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.90  E-value=1.8e-08  Score=50.22  Aligned_cols=55  Identities=11%  Similarity=0.066  Sum_probs=37.8

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      ++|+++|+++..... ......+    ..+.|.|......|.|.|+|.|.|.........
T Consensus        17 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~   76 (82)
T cd05759          17 IIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKET   76 (82)
T ss_pred             EEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEE
Confidence            789999999874321 1111111    135788988888899999999999987554333

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.89  E-value=6.5e-09  Score=52.30  Aligned_cols=51  Identities=6%  Similarity=0.057  Sum_probs=37.6

Q ss_pred             CeEEEeCCEEeccCCCEEEEEe---CCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNV---PYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~---~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      .+.|||||++|..... .....   ...+.|.|.....+|.+.|+|.|.|+++..
T Consensus        16 ~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885          16 TLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             eEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            3789999999974221 00000   123469999999999999999999999965

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.88  E-value=8.9e-09  Score=50.30  Aligned_cols=49  Identities=31%  Similarity=0.454  Sum_probs=37.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V   60 (68)
                      +.|++++.++..+..        .  |.|.+++..|+|.|+|.|.|..+ ..+..+.|.|
T Consensus        31 ~~w~~~~~~~~~~~~--------~--~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   31 VQWYKNGSPINSSQN--------G--LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEEEETTEEEEEESS--------E--EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeeeeeeeeee--------e--eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            689999888763222        1  77899999999999999999776 4466677765

...

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.86  E-value=8.2e-09  Score=53.30  Aligned_cols=31  Identities=19%  Similarity=0.183  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      .+...|.|.+++.+|+|.|.|.+.|..+..+
T Consensus        62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~   92 (94)
T cd07690          62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEVE   92 (94)
T ss_pred             CCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence            3456799999999999999999999988654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.81  E-value=6.1e-09  Score=49.45  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCe--EEEEEcCCCCCCCEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYN--TKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~--~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      +.|++++..+..............  ..|.|.+++.+|+|.|+|.|
T Consensus        19 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   19 VTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             EEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            689999987764333322222221  13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.75  E-value=2.9e-08  Score=53.95  Aligned_cols=39  Identities=10%  Similarity=0.210  Sum_probs=36.4

Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044          27 KLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +|.|.+++..|+|.|.|.+.|..|..+..+.|.|..+|.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~   40 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR   40 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc
Confidence            689999999999999999999999999999999998775

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.73  E-value=2.3e-07  Score=47.88  Aligned_cols=40  Identities=15%  Similarity=0.360  Sum_probs=33.2

Q ss_pred             eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEE
Q psy7044          22 VPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL   61 (68)
Q Consensus        22 ~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~   61 (68)
                      ......|.|.+++.+|+|.|.|.+.+..|.. ...+.|.|.
T Consensus        57 ~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~vy   97 (97)
T cd05775          57 SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHIY   97 (97)
T ss_pred             cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEeC
Confidence            3445789999999999999999999998854 777777763

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.72  E-value=6e-08  Score=50.48  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=37.7

Q ss_pred             CCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEE
Q psy7044          15 GNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~   61 (68)
                      +|+.+.. ..+..+|.|.+++.+|.|.|.|.+.| +.|..++.+.|.|.
T Consensus        51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~   99 (99)
T cd05886          51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY   99 (99)
T ss_pred             CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence            4554432 12346899999999999999999999 88889999999884

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.68  E-value=2.4e-07  Score=48.01  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=37.3

Q ss_pred             CCEEEE-EeCCeEEEEEcCCCCCCCEEEEEEE-EcCCcceeEEEEEEEE
Q psy7044          15 GNVEIV-NVPYNTKLSIVDILRKNSGVYRIKA-ENASGKDEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~-~~~~~~~l~I~~~~~~d~G~Y~c~a-~n~~g~~~~~~~l~V~   61 (68)
                      +|+.+. .......|.|.+++.+|.|.|.|.+ ..+.|..+++..|.|+
T Consensus        48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~   96 (96)
T cd05887          48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL   96 (96)
T ss_pred             CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence            355543 1233568999999999999999996 6889999999999874

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.67  E-value=2e-07  Score=48.99  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV   60 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V   60 (68)
                      .+|.|+++++.|+|.|+|.+.|..+ ...+...|.|
T Consensus        70 gSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          70 GSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             CcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            3799999999999999999999884 6677777654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.67  E-value=2e-07  Score=48.33  Aligned_cols=47  Identities=21%  Similarity=0.355  Sum_probs=36.9

Q ss_pred             CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEE
Q psy7044          15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~   61 (68)
                      +|+++..  ......|.|.+++.+|+|.|.|.+.+ +.|..++.+.|.|.
T Consensus        51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~  100 (100)
T cd05888          51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW  100 (100)
T ss_pred             CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence            3555542  22356799999999999999999998 77877888888873

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.65  E-value=1.3e-07  Score=49.13  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=35.5

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +...|.|.+++.+|+|.|.|.+.|..+..+..+.|.|.+
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence            567899999999999999999999988889999999875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.61  E-value=9.3e-08  Score=49.50  Aligned_cols=48  Identities=13%  Similarity=0.108  Sum_probs=36.1

Q ss_pred             eEEEeCCEE-eccCCCEEEEEeCCeEEEEEcCCCCCCCE-EEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQ-VRSEGNVEIVNVPYNTKLSIVDILRKNSG-VYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~-l~~~~~~~~~~~~~~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~   52 (68)
                      +.|++++.. +....|+.+.  . ...|.|.+++..|+| .|.|.|.|.+...
T Consensus        36 i~W~~~~~~~i~~~~Ri~~~--~-~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          36 IYWMNSDLLHITQDERVSMG--Q-NGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             EEEECCCCccccccccEEEC--C-CceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            689988765 3444555432  2 257999999999999 8999999998644

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.60  E-value=2.4e-07  Score=48.11  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +...|.|.+++.+|+|.|.|.+.+..+..+..+.|.|.+
T Consensus        66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence            356899999999999999999999999999999998865

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.60  E-value=3.4e-07  Score=46.21  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV   60 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V   60 (68)
                      ..|.|.+++.+|+|.|.|.+....| .....+.|.|
T Consensus        57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v   92 (92)
T cd05741          57 GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV   92 (92)
T ss_pred             ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence            6799999999999999999998886 3455555543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.56  E-value=1e-06  Score=44.51  Aligned_cols=62  Identities=11%  Similarity=0.058  Sum_probs=43.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVP---YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .|.|+|+|+++............   ..+.|.+.....+|...|+|.|.|++-.. +.+..|.|..
T Consensus        16 ~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883          16 TIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            37899999999753221111112   24679998888889999999999988743 5556666653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.55  E-value=1.5e-06  Score=45.80  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +...|.|.+++.+|+|.|.|.+.......+..+.|.|.+
T Consensus        70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            457899999999999999999999888889999998875

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.55  E-value=1.3e-06  Score=46.62  Aligned_cols=36  Identities=11%  Similarity=0.219  Sum_probs=29.0

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEIT   59 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~   59 (68)
                      +..+|.|.+++.+|.|.|+|.+.|.-+..  ...+.|.
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            45689999999999999999999998844  3445544

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.51  E-value=6.9e-07  Score=47.44  Aligned_cols=47  Identities=26%  Similarity=0.426  Sum_probs=38.5

Q ss_pred             CEEEEE---eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          16 NVEIVN---VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        16 ~~~~~~---~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      |+.+..   ..+...|.|.+++.+|+|.|.|.+.+.....+....|.|.+
T Consensus        61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            555544   33567899999999999999999998888888888888764

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.51  E-value=4.2e-06  Score=44.83  Aligned_cols=39  Identities=23%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +..+|.|.+++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            567899999999999999999999999999999998875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.51  E-value=1.5e-06  Score=46.08  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +...|.|.+++.+|+|.|.|.+.......+..+.|.|.+
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            467899999999999999999999777788899998864

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.44  E-value=1.9e-06  Score=44.75  Aligned_cols=36  Identities=19%  Similarity=0.200  Sum_probs=28.7

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.+..+
T Consensus        57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            56655443  3567899999999999999999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.43  E-value=1.1e-06  Score=45.25  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=29.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+....  +...|.|.+++.+|+|.|.|.+.+..+
T Consensus        54 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          54 GRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            455555444  567899999999999999999998886

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.41  E-value=8.9e-07  Score=45.08  Aligned_cols=44  Identities=16%  Similarity=0.255  Sum_probs=32.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|+|+|...... .  .........|.|.+++++|+|.|+|...|.
T Consensus        32 f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          32 YRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             EEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            5688888764421 1  112233567999999999999999999987

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.41  E-value=7.3e-06  Score=42.39  Aligned_cols=37  Identities=14%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             cCCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          13 SEGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        13 ~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ..+|+.+.. ......|.|.+++.+|.|.|.|.+....
T Consensus        48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p   85 (95)
T cd05881          48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDP   85 (95)
T ss_pred             CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEccc
Confidence            457887665 3345679999999999999999987533

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd00096 Ig Immunoglobulin domain

Probab=98.36  E-value=4.5e-06  Score=38.37  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=36.3

Q ss_pred             CeEEEeCCEEeccCCC----EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           1 MFDIFCPRSQVRSEGN----VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~----~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      .+.|++++........    ...........|.|.+++..|.|.|.|.+.+..+.
T Consensus        14 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   68 (74)
T cd00096          14 TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT   68 (74)
T ss_pred             cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence            3689999887753321    11112234567999999999999999999988743

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.36  E-value=7.4e-07  Score=42.72  Aligned_cols=25  Identities=32%  Similarity=0.557  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      ...+.|.|.++..+|.|.|+|.|+|
T Consensus        51 ~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3456899999999999999999988

...

>KOG4194|consensus

Probab=98.29  E-value=1.6e-06  Score=57.24  Aligned_cols=63  Identities=14%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +..|+|+++||--.++...  .++...|.+.+....|+|.|+|...|..|.....+.+.|+.++.
T Consensus       738 r~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~  800 (873)
T KOG4194|consen  738 RLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK  800 (873)
T ss_pred             cccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence            4679999999875565443  46667899999999999999999999999998888777776654

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.29  E-value=1e-05  Score=40.44  Aligned_cols=51  Identities=6%  Similarity=0.015  Sum_probs=34.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEE-eC----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVN-VP----YNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~-~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      .+.|+++|++|.... ..... .+    -.+.|.+......+.+.|+|.|.|+....
T Consensus        16 ~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761          16 TIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             eEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            378999999997432 11111 11    12356676666667789999999999864

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PHA02633 hypothetical protein; Provisional

Probab=98.27  E-value=5.4e-06  Score=39.73  Aligned_cols=41  Identities=15%  Similarity=0.265  Sum_probs=36.6

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      ...-|-|-++..+|+|.|.|...|+.-....++.|.|..++
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            44468899999999999999999999999999999998765

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.27  E-value=1e-05  Score=46.38  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             CCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEE-cCCc-ceeEEEEEEEEc
Q psy7044          15 GNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAE-NASG-KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g-~~~~~~~l~V~~   62 (68)
                      +|++ +......+.|.|++++++|+|.|.|... -+.| ..+.++-|+|..
T Consensus        73 ~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987         73 NKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             CeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence            3555 3444456789999999999999999865 5567 778888888765

>KOG4221|consensus

Probab=98.24  E-value=4.5e-06  Score=58.09  Aligned_cols=60  Identities=17%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      +.|.||+++|..+.++.+..   ...|.|.+++..|.|.|+|.++|..-+. +..++|+|...|
T Consensus       172 i~w~kn~~pl~~~~r~i~lp---sG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~  232 (1381)
T KOG4221|consen  172 IMWLKNDQPLPLDSRVIVLP---SGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDP  232 (1381)
T ss_pred             eEEecccccccCCCcEEEcC---CCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCc
Confidence            68999999998766665433   2379999999999999999999988865 556888887444

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.23  E-value=2.1e-05  Score=39.52  Aligned_cols=51  Identities=4%  Similarity=-0.041  Sum_probs=35.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEe-CC-----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNV-PY-----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~-~~-----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      .++|++||++|..... .+... ++     .+.|.+......+...|+|.|.++....
T Consensus        16 ~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705          16 NIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            3789999999874332 22222 21     2456666666778899999999998755

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=98.20  E-value=1.1e-05  Score=42.50  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      ..-.|.|+.++..|+|.|.+.+.|..|.. ...+.|.|+|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVFD  108 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVFD  108 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE-
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEeeC
Confidence            33479999999999999999999999966 6678888875

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.18  E-value=6.2e-06  Score=42.32  Aligned_cols=38  Identities=18%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEITVL   61 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~V~   61 (68)
                      ....|.|.+++.+|+|.|.|... .+.|..+..+-|+|.
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~   97 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY   97 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence            45679999999999999999976 778888888888874

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.16  E-value=6.7e-06  Score=41.62  Aligned_cols=50  Identities=10%  Similarity=0.038  Sum_probs=35.0

Q ss_pred             eEEEeCCEEeccCCC-E-EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGN-V-EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~-~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|++||.++..... . .....++    .+.|.|......|.|.|+|.|.+....
T Consensus        32 i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          32 VTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             EEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            789999999975432 1 1112222    235777777777999999999998875

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.16  E-value=1.3e-05  Score=41.60  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=26.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .++.+........|.|.+++.+|+|.|.|.+.+.
T Consensus        60 ~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          60 SRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            3565544445668999999999999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.14  E-value=7e-06  Score=43.52  Aligned_cols=36  Identities=11%  Similarity=0.328  Sum_probs=28.5

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCccee--EEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDE--ADVEIT   59 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~--~~~~l~   59 (68)
                      +...|.|.+++.+|+|.|.|.+.|..+...  ..+.|.
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            356799999999999999999999887532  345544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.13  E-value=9.6e-06  Score=42.37  Aligned_cols=36  Identities=17%  Similarity=0.196  Sum_probs=27.4

Q ss_pred             CCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +++.+.... ....|.|.+++.+|+|.|.|.+.+..+
T Consensus        60 ~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          60 DRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLGGG   96 (110)
T ss_pred             CceEEECcCCCccEEEECCCChhhCEEEEEEeeCCCC
Confidence            455544332 457899999999999999999987643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>KOG4222|consensus

Probab=98.13  E-value=4e-06  Score=58.04  Aligned_cols=63  Identities=21%  Similarity=0.153  Sum_probs=52.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|.|++-.+. -.++.+...  ...|.|.+++..|.|.|.|.|+|.+|.-++.+.|+|..+|++.
T Consensus       257 Vrwkk~~~~~P-~~ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~  319 (1281)
T KOG4222|consen  257 VRWKKDDPSLP-RSRYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFG  319 (1281)
T ss_pred             eeeeccCCCCC-ccceeeeec--cccccccccCCCcccceeeeccccccccccccceEEecCcccc
Confidence            56888777766 345665443  3479999999999999999999999999999999999999874

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.09  E-value=2.9e-05  Score=39.85  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=33.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC-CcceeEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA-SGKDEADVEITV   60 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~-~g~~~~~~~l~V   60 (68)
                      .++.+...  .....|.|.+++.+|+|.|.|.+... .......+.|.|
T Consensus        66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            34444443  23678999999999999999999987 334456666665

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.08  E-value=3.5e-05  Score=38.76  Aligned_cols=51  Identities=6%  Similarity=0.015  Sum_probs=35.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC-----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP-----YNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~-----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|+|||+++............     ..+.|.+......+...|+|.|.|+....
T Consensus        17 itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~   72 (83)
T cd05884          17 IRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA   72 (83)
T ss_pred             EEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence            7899999998643222111111     13468887777788999999999988764

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.05  E-value=1.6e-05  Score=42.01  Aligned_cols=35  Identities=11%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCccee--EEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDE--ADVEIT   59 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~--~~~~l~   59 (68)
                      ...|.|.+++.+|+|.|.|.+.|.-+...  ..+.|.
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            46799999999999999999998877432  345554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.04  E-value=2.1e-05  Score=41.33  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=27.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+....  ....|.|.+++.+|+|.|.|.+...
T Consensus        64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWES   99 (116)
T ss_pred             CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEecC
Confidence            466666555  5678999999999999999988643

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.95  E-value=5.2e-05  Score=38.82  Aligned_cols=34  Identities=9%  Similarity=0.060  Sum_probs=28.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +++.+........|.|.+++.+|+|.|-|.+.+.
T Consensus        52 ~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          52 DRFSGSKSGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CCEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence            4677666666778999999999999999988754

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.94  E-value=5.2e-05  Score=39.26  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEIT   59 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~   59 (68)
                      ....|.|.+++.+|+|.|+|... -+.|..++.+.|.
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            34689999999999999999986 5688888877753

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.83  E-value=5.2e-05  Score=38.83  Aligned_cols=45  Identities=11%  Similarity=0.134  Sum_probs=28.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      +.|+|+|.....-.............+.|..++..|+|.|.|...
T Consensus        31 f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          31 FILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            578898865331000000112234578999999999999999865

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.75  E-value=0.00018  Score=38.18  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=23.2

Q ss_pred             eCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          22 VPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        22 ~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      ..+...|.|.+++.+|+|.|.|.++..
T Consensus        76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          76 GKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            345678999999999999999988765

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA03376 BARF1; Provisional

Probab=97.75  E-value=0.00042  Score=40.29  Aligned_cols=31  Identities=10%  Similarity=0.016  Sum_probs=25.5

Q ss_pred             eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044          22 VPYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus        22 ~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ..+.-.|.|.+++.+|.|.|+|..+-.....
T Consensus        83 ~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~  113 (221)
T PHA03376         83 SANTFFLVVTAANISHDGNYLCRMKLGETEV  113 (221)
T ss_pred             cCCeEEEEEEeeeecCCceEEEEEEcCCCce
Confidence            3567789999999999999999988655433

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.67  E-value=9.3e-05  Score=44.49  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=36.0

Q ss_pred             eEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044           2 FDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus         2 ~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      +.|... |+.|.....+.++.++   .|.+.+...+++|.|+|.++-..
T Consensus        15 y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   15 YLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             eEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence            679875 6677765677776554   59999999999999999998666

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>smart00406 IGv Immunoglobulin V-Type

Probab=97.60  E-value=0.00012  Score=35.56  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=23.7

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIK   44 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~   44 (68)
                      +|+.+...  .+...|.|.+++.+|+|.|.|.
T Consensus        49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            45555544  4567899999999999999995

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.59  E-value=0.00024  Score=37.08  Aligned_cols=50  Identities=6%  Similarity=-0.004  Sum_probs=32.9

Q ss_pred             eEEEeCCEEeccCCCEEE---EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEI---VNVPYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~---~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|++++|.... ...   ......++|.+.-...+|.-.|+|.|++..+..
T Consensus        36 i~W~rG~~~l~~~~-~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~   88 (100)
T cd05755          36 VVLLRGNETLSRQP-FGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE   88 (100)
T ss_pred             EEEeeCCEEcccce-eccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence            68999999997421 111   011124567777555555559999999988765

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.58  E-value=0.00018  Score=35.18  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=32.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+| |.++....         ...|.+-+...+-.|.|.|.++|    .+....|.|.
T Consensus        19 i~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy   64 (69)
T cd07691          19 ITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY   64 (69)
T ss_pred             EEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence            78999 66554211         34688889999999999999877    3344445554

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.55  E-value=0.0014  Score=34.71  Aligned_cols=50  Identities=2%  Similarity=-0.066  Sum_probs=29.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC-----eEEEEEcCCCCCCCE-EEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY-----NTKLSIVDILRKNSG-VYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~-----~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~   52 (68)
                      ++|+|||+++.....-.....++     .+.|.+.. ...|.| .|+|.+.......
T Consensus        40 v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l~~   95 (111)
T cd05772          40 VKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTLQA   95 (111)
T ss_pred             EEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCCCC
Confidence            68999999987422111111222     34466664 444444 5999999876543

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.47  E-value=0.0012  Score=32.26  Aligned_cols=49  Identities=10%  Similarity=0.053  Sum_probs=31.5

Q ss_pred             eEEEeCCEEeccCCC-EEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGN-VEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      ++|+|||+++..+.. ... ...++    .+.|.|......+...|+|.+..+..
T Consensus        18 v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~   72 (75)
T smart00407       18 VTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL   72 (75)
T ss_pred             EEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence            689999998653211 111 11222    23577777777888999999987654

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.43  E-value=0.00074  Score=35.48  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=26.8

Q ss_pred             CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +|+.+..  ..+...|.|.+++.+|+|.|.|.+...
T Consensus        59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            5666653  244678999999999999999998853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.43  E-value=0.00036  Score=36.26  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        16 ~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      ++.+........|.|.+++.+|+|.|-|.+.+
T Consensus        59 rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          59 RFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             eEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence            34443444566799999999999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.33  E-value=0.0011  Score=33.79  Aligned_cols=35  Identities=11%  Similarity=0.246  Sum_probs=26.8

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+...  .+...|+|.+++.+|+|.|.|.+.+..
T Consensus        51 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          51 GRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             CCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence            45555422  346789999999999999999887654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.31  E-value=0.00061  Score=35.46  Aligned_cols=25  Identities=20%  Similarity=0.247  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .....|+|.+++.+|+|.|-|...+
T Consensus        69 ~~~~~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          69 SSRYRLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             CCEEEEEECCCCHHHCEEEEEeEcC
Confidence            3456799999999999999998764

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.29  E-value=0.0045  Score=31.70  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +...|.+.++...|+|.++|.+.-..-...+.+.|.|++
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl~   87 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVLA   87 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEEe
Confidence            345789999999999999999975544556777777653

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG1480|consensus

Probab=97.26  E-value=0.00016  Score=48.93  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=43.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~   61 (68)
                      +.|+|++..+++.+++....   .+-|.|..+...|+|.|+|.|.|-++.. ...+.+.|.
T Consensus       162 ~~w~k~e~~~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  162 VEWLKNEVVIDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             hhccccCCCCCccccchhhh---cCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            57999999998755554332   3458999999999999999999999966 444555443

>KOG3515|consensus

Probab=97.14  E-value=0.00072  Score=45.73  Aligned_cols=64  Identities=17%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|.+++.++..-..-..........+.+.++.+.|.|.|.|.|.|..|.+.+...+.+...|.
T Consensus       434 ~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~  497 (741)
T KOG3515|consen  434 FYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPH  497 (741)
T ss_pred             hhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCc
Confidence            5799999888754443333333344555778999999999999999999999998887776654

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.01  E-value=0.0039  Score=31.66  Aligned_cols=47  Identities=11%  Similarity=0.072  Sum_probs=27.8

Q ss_pred             eEEEeCCEEeccCC---CEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEG---NVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~---~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|+++|..+..+.   .+. .+.++    .+.|.|.   ..+...|+|.+.+.....
T Consensus        33 v~W~~~g~~~~~~~~~~~~~-~~~d~ty~~~s~l~v~---~~~~~~ytC~V~H~~~~~   86 (93)
T cd07698          33 VTWLRDGEDSVDDVESGEIL-PNGDGTYQLWVTLEVP---PEDKARYSCRVEHSGLKE   86 (93)
T ss_pred             EEEEECCEECcccccccceE-ECCCCeEEEEEEEEEC---CCCCCEEEEEEEeCCCCC
Confidence            68999997543221   111 12222    2245555   448899999998877643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.85  E-value=0.012  Score=30.32  Aligned_cols=32  Identities=6%  Similarity=0.053  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      .+.|.+.-...+|.-.|+|.+.|.........
T Consensus        58 ~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~   89 (95)
T cd05719          58 TSEYRLVPSREANGKELTCVVSHPTLQEPQRF   89 (95)
T ss_pred             EEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence            35788887778888999999999987554443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.79  E-value=0.015  Score=29.80  Aligned_cols=48  Identities=17%  Similarity=0.138  Sum_probs=28.7

Q ss_pred             eEEEeCCEEeccCC-CEE-EEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEG-NVE-IVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-~~~-~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|++||+++..+. ... ..+.++    .+.|.+.   ..+...|+|.+.-+....
T Consensus        33 v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~~   86 (94)
T cd05766          33 VKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQE   86 (94)
T ss_pred             EEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCCC
Confidence            68999999987431 111 122222    2234444   346779999998877653

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.74  E-value=0.0045  Score=29.99  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=23.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|.+|+..+...+.          .+...+-. +++|.|+|.+.+.
T Consensus        21 i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692          21 IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence            679999866653222          22333333 8899999998644

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.73  E-value=0.0099  Score=30.73  Aligned_cols=51  Identities=10%  Similarity=0.012  Sum_probs=31.8

Q ss_pred             eEEEeCCEEeccCCC--EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGN--VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~--~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|++||+++..+..  ......++    .+.|.+......+...|+|.+..+....
T Consensus        36 v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~   92 (100)
T cd07699          36 VQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS   92 (100)
T ss_pred             EEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence            689999999863210  01122122    2356676666566889999998776543

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.69  E-value=0.019  Score=29.50  Aligned_cols=51  Identities=8%  Similarity=0.005  Sum_probs=31.4

Q ss_pred             eEEEeCCEEeccCCC--EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGN--VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~--~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||+++..+..  ......++    .+.|.+....-.+...|+|.+..+....
T Consensus        33 vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          33 VEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             EEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            689999999742210  01111121    2356677555557789999998877653

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.57  E-value=0.0086  Score=31.73  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +|+.+....  ....|+|.+++.+|+|.|-|.+..
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            355554433  345799999999999999998765

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.55  E-value=0.031  Score=28.72  Aligned_cols=46  Identities=4%  Similarity=0.104  Sum_probs=27.5

Q ss_pred             eEEEeCCEEeccCCC-EEE-EEeCC-e---EEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGN-VEI-VNVPY-N---TKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~-~~~~~-~---~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|+|||+++. +.. ..+ .+.++ .   +.|.+.   ..+...|+|.+.-....
T Consensus        34 v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l~   85 (93)
T cd05770          34 IRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSMS   85 (93)
T ss_pred             EEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCCC
Confidence            68999999986 321 111 12222 1   234444   56778899999875543

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.52  E-value=0.02  Score=29.43  Aligned_cols=47  Identities=9%  Similarity=0.010  Sum_probs=27.9

Q ss_pred             eEEEeCCEEeccCCC-EE-EEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGN-VE-IVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~-~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|++||.++..+.. .. ..+.++    .+.|.+..   .+...|+|.+.-....
T Consensus        34 v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l~   86 (94)
T cd05767          34 VTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGLE   86 (94)
T ss_pred             EEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCCC
Confidence            689999999864211 11 112222    23466653   4566999999876543

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.51  E-value=0.01  Score=30.88  Aligned_cols=51  Identities=8%  Similarity=-0.021  Sum_probs=30.3

Q ss_pred             eEEEeCCEEeccCCCEE--EEEe---CC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVE--IVNV---PY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~--~~~~---~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||+++.......  ....   ++    .+.|.|......+...|+|.+.-+....
T Consensus        35 v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~~   94 (102)
T cd05768          35 VKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALPL   94 (102)
T ss_pred             EEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCCc
Confidence            68999999986432111  1111   12    2356665444456678999998766543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.44  E-value=0.013  Score=29.01  Aligned_cols=47  Identities=11%  Similarity=0.058  Sum_probs=29.8

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCCe----EEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPYN----TKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~~----~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      +.|+++|..+......  .....++.    +.|.+.   ..+...|+|.+..+...
T Consensus        27 v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen   27 VTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             EEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             EEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            7899999998743221  11123332    346665   56666899999887664

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=96.40  E-value=0.04  Score=29.72  Aligned_cols=26  Identities=12%  Similarity=0.173  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      +.|.+......+...|+|.+.+....
T Consensus       108 s~L~v~~~~~~~g~~ytC~V~H~~l~  133 (139)
T cd05771         108 SHLTLEPGTEDAGATYTCRVSHVSLE  133 (139)
T ss_pred             EEEEecCCccCCCCEEEEEEEcCCCC
Confidence            56888877777888999999887654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.31  E-value=0.043  Score=28.30  Aligned_cols=33  Identities=15%  Similarity=0.158  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|.+.....+|.-.|+|+|+|+.......+.+
T Consensus        59 S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          59 SEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             EEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            468887777788999999999998765554443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.27  E-value=0.018  Score=31.48  Aligned_cols=58  Identities=16%  Similarity=0.114  Sum_probs=36.8

Q ss_pred             eEEEeCCEEecc--C-CCEE---------E-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRS--E-GNVE---------I-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~--~-~~~~---------~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|..+|+.+-.  + .+..         + ....+..+|.+...+.- .|.|+|.+.......+..+.|.+
T Consensus        49 VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   49 VKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence            689999887641  1 1110         1 00123445777775555 89999999999888888888876

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=96.07  E-value=0.021  Score=33.85  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044          17 VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus        17 ~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.+.-+...|+|+|+++..+..|.|+|.|.-..+..
T Consensus        91 y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~  126 (251)
T PHA02982         91 YALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKE  126 (251)
T ss_pred             EEEEEeccceeEEeccCCcccCCceEEEEecCCCch
Confidence            445566778999999999999999999999877644

>PHA03042 CD47-like protein; Provisional

Probab=95.99  E-value=0.04  Score=33.64  Aligned_cols=53  Identities=17%  Similarity=0.120  Sum_probs=35.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|..||+.+-....      .+.++|.....+. -.|.|+|.|.+..-.-...+.|.-.
T Consensus        53 V~Wkf~~~~If~~n~------tn~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~IeLk~~  105 (286)
T PHA03042         53 INWKFNNKVIFKKNN------TNTSSLKFNFSKN-LSGNYTCEAINKFNKIKNTIELQYV  105 (286)
T ss_pred             EEEEeCCeeEEEecC------CcceEEEEecccc-CCCceeEEEeecccCccEEEEEEEE
Confidence            689999988753222      1235677765444 4899999999876655666666543

>PHA03283 envelope glycoprotein E; Provisional

Probab=95.97  E-value=0.056  Score=35.64  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=35.9

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      ...+.|.|.+++..++|.|+.-..|..+..+..+.|.|.+++
T Consensus       131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~  172 (542)
T PHA03283        131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPP  172 (542)
T ss_pred             CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCC
Confidence            445789999999999999999999988877888888887743

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.88  E-value=0.02  Score=29.61  Aligned_cols=46  Identities=7%  Similarity=-0.104  Sum_probs=25.5

Q ss_pred             eEEEeCCEEeccCCC-E-EEEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGN-V-EIVNVPY---NTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~-~~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ++|.+||+++..+.. . .+.+.+.   .+.|.+...+.  ...|+|.+.-..
T Consensus        35 v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~--~~~ysC~V~H~g   85 (96)
T cd07697          35 VHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSL--GKKFRCIYKHEG   85 (96)
T ss_pred             EEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhC--CCeEEEEEEECC
Confidence            689999999763311 0 1112221   23466664332  344999998744

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.87  E-value=0.066  Score=26.55  Aligned_cols=51  Identities=6%  Similarity=0.048  Sum_probs=32.4

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|+.++.++........ ....+    .+.|.+......+...++|.|.|+....
T Consensus        32 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   32 ITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             EEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             EEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            789999988821111111 11111    2468887666678899999999987653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=95.66  E-value=0.085  Score=28.13  Aligned_cols=53  Identities=9%  Similarity=0.058  Sum_probs=32.3

Q ss_pred             eEEEeCCEEeccCCC---EEEEEeCC----eEEEEEcCCCCCC-CEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRSEGN---VEIVNVPY----NTKLSIVDILRKN-SGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~---~~~~~~~~----~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|++||+++..+..   ......++    .+.|.|...+-.+ .-.|+|.+.-.......
T Consensus        37 V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~~   97 (115)
T cd05769          37 LSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDTD   97 (115)
T ss_pred             EEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccce
Confidence            689999999874321   11221111    3457777554433 67899999877665543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>KOG4597|consensus

Probab=95.00  E-value=0.042  Score=35.98  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=33.2

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      ..|.|-+....|+|-|+|.|.|.+|.....+.+.+..
T Consensus       257 cql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~~  293 (560)
T KOG4597|consen  257 CQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSVK  293 (560)
T ss_pred             eeEEEcchhhcCCCceeeccccccceeeccceeeeec
Confidence            4699999999999999999999999998888877653

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.73  E-value=0.27  Score=25.28  Aligned_cols=52  Identities=4%  Similarity=-0.112  Sum_probs=27.2

Q ss_pred             eEEEeCCEEec-cCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVR-SEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~-~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      ++|+|||.... ........+.++    .+.|.+....-.+.-.|+|.+..+.....
T Consensus        34 v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~p   90 (96)
T cd07696          34 VTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPTP   90 (96)
T ss_pred             EEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCCC
Confidence            68999974332 111111111222    23455554443445689999988765443

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.03  E-value=0.37  Score=24.11  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=28.2

Q ss_pred             EEEEcCCCCCCCEEEEEEE-EcCCcceeEEEEEEEE
Q psy7044          27 KLSIVDILRKNSGVYRIKA-ENASGKDEADVEITVL   61 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a-~n~~g~~~~~~~l~V~   61 (68)
                      .+........|+|.+.|.| .|..-..+....|.|.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~   79 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL   79 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence            4667778889999999999 7777777777777664

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03286 envelope glycoprotein E; Provisional

Probab=93.78  E-value=0.31  Score=31.85  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=32.3

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      ..+.|+|.+++...+|.|+.-..|..|.. +..+.|.|.+
T Consensus       125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~  164 (492)
T PHA03286        125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG  164 (492)
T ss_pred             CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence            34679999999999999999999998865 5667777753

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.71  E-value=0.16  Score=26.08  Aligned_cols=47  Identities=15%  Similarity=0.143  Sum_probs=25.8

Q ss_pred             eEEEeCCEEeccCCCE--EEEE-eCC---eEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVN-VPY---NTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~-~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ++|+|||++ ..+...  .+.. ++.   .+.|.+...+-...-.|+|.++...
T Consensus        35 vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          35 FTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             EEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            689999998 422100  1111 121   2345555433223667999998765

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.12  E-value=0.18  Score=26.32  Aligned_cols=49  Identities=6%  Similarity=-0.037  Sum_probs=27.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      +.|.++|.+ ...........++    .+.|.+..-.-.....|+|.+..+...
T Consensus        39 V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   91 (99)
T cd04986          39 FTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEGD   91 (99)
T ss_pred             EEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCcc
Confidence            789999876 2100001111122    235666644445556699999887764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae

Probab=92.84  E-value=0.76  Score=26.11  Aligned_cols=35  Identities=14%  Similarity=0.228  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      .-.|.|++.+..|+|.|-++++=........+.+.
T Consensus       123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~  157 (161)
T PF01688_consen  123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLS  157 (161)
T ss_pred             ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEe
Confidence            45699999999999999999986665544444443

These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=92.36  E-value=0.77  Score=23.00  Aligned_cols=42  Identities=12%  Similarity=0.161  Sum_probs=28.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|+-||+.+.....        ...+.+.   ....|.|++.+....|....
T Consensus        45 ~~W~vdg~~~g~~~~--------~~~~~~~---~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   45 VYWFVDGEPLGTTQP--------GHQLFWQ---PDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             EEEEECCEEcccCCC--------CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence            689999999943222        1233444   46789999999998886544

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function

Probab=92.22  E-value=0.7  Score=22.25  Aligned_cols=57  Identities=12%  Similarity=0.095  Sum_probs=36.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      ..|+++|+.+.. -.+.+. ...-....-+.......|.+++.+..+.|..=....+.|
T Consensus         9 H~W~~~g~~~~~-i~l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V   65 (66)
T PF11141_consen    9 HRWYKNGKLVAR-IPLPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV   65 (66)
T ss_pred             EEEEECCEEEEE-EEEecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence            469999988762 112222 111233444455568999999999999998766555544

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=91.19  E-value=0.062  Score=34.77  Aligned_cols=38  Identities=34%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .+.|.|.+++..|+|.|+....|..|.. +..+.|.|..
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~  126 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG  126 (439)
T ss_dssp             ---------------------------------------
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence            3569999999999999999999888855 5557777765

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>KOG3515|consensus

Probab=90.53  E-value=0.22  Score=34.31  Aligned_cols=62  Identities=13%  Similarity=0.099  Sum_probs=45.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|++.++.+.  .+...   .-...|......++.-++|-|.|.|..| .......+.|..+|-.+
T Consensus        39 ~~eW~h~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~  101 (741)
T KOG3515|consen   39 DVEWYHSTSGEH--GRYAT---IADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACL  101 (741)
T ss_pred             ceEEEecCcccc--ccccc---ccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCcccc
Confidence            368999988877  33222   1234688888899999999999999988 44667777777777543

>PHA03282 envelope glycoprotein E; Provisional

Probab=90.11  E-value=1.6  Score=28.94  Aligned_cols=20  Identities=20%  Similarity=0.429  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCCCEEEEEEEE
Q psy7044          27 KLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      +|.|.++..+|+|.|.+.+.
T Consensus       125 tl~l~~a~~~DsG~Y~L~~~  144 (540)
T PHA03282        125 TLVLREARETDSGMYVLSVS  144 (540)
T ss_pred             eEEEeeccccCCceEEEEec
Confidence            59999999999999999964

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=89.31  E-value=1.1  Score=24.01  Aligned_cols=23  Identities=9%  Similarity=0.248  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEE
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .+.-.|.+.+++..|++.|-|..
T Consensus        71 ~ntv~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          71 NEQVNFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             CCEEEEEEcCCCHHHCeEEEEEe
Confidence            44567999999999999999964

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03290 envelope glycoprotein I; Provisional

Probab=88.06  E-value=3.2  Score=26.36  Aligned_cols=27  Identities=11%  Similarity=0.128  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      ..-.|.|.+....|+|.|-+++.=..-
T Consensus       127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga  153 (357)
T PHA03290        127 AEIIFKINKPGIEDAGIYLLLVQLDHS  153 (357)
T ss_pred             cceEEEeCCCCcccCeeEEEEEEeCCC
Confidence            345799999999999999999885544

>PHA03289 envelope glycoprotein I; Provisional

Probab=88.01  E-value=2.7  Score=26.59  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .-.|.|.+....|+|.|-++++=.......-+.+.+
T Consensus       121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv  156 (352)
T PHA03289        121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV  156 (352)
T ss_pred             ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence            347999999999999999999876664434444433

>PHA03281 envelope glycoprotein E; Provisional

Probab=87.98  E-value=1.8  Score=29.23  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCC
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILK   64 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p   64 (68)
                      +.|.|.+++...+|.|+.-+....| .-.+.+.|.|.+++
T Consensus       298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~  337 (642)
T PHA03281        298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE  337 (642)
T ss_pred             CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence            4799999999999999998887767 34667788887644

>PHA03292 envelope glycoprotein I; Provisional

Probab=87.19  E-value=3.4  Score=26.70  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      .-.|.|.+....|+|.|-++++=.......-+.|.
T Consensus       127 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~ls  161 (413)
T PHA03292        127 NVLLNITGPQPADSGAYILRVKLDHAPTADVFGLS  161 (413)
T ss_pred             ceEEEeCCCCcccceeEEEEEEeCCCccCceeEEE
Confidence            45799999999999999999987766443333333

>PHA03291 envelope glycoprotein I; Provisional

Probab=87.18  E-value=3.5  Score=26.44  Aligned_cols=38  Identities=11%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      ..-.|.|.+....|+|.|-+++.=.......-+.|.+.
T Consensus       127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~  164 (401)
T PHA03291        127 RQPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA  164 (401)
T ss_pred             cceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence            34579999999999999999999887776666666655

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=85.43  E-value=3.4  Score=21.01  Aligned_cols=44  Identities=2%  Similarity=0.036  Sum_probs=31.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .+-|..|+..++ ++++... .+..+.+++.+.....+-.|.|...
T Consensus        39 ~I~Wkln~~~iP-~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   39 QIVWKLNGEKIP-GSQYRVI-NDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             CEEEECSSCEST-CGCEEEE-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred             eEEEEECCEECC-hhHccee-CCeEEEEEEccCCCCCceEEEEEEc
Confidence            367999999666 5666543 4566899999999998888888754

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=84.65  E-value=3.4  Score=21.67  Aligned_cols=47  Identities=11%  Similarity=0.110  Sum_probs=25.5

Q ss_pred             eEEEeCCEEeccCCCEE---EEE-eCCeEEEEEcCCCCCCCE-EEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVE---IVN-VPYNTKLSIVDILRKNSG-VYRIKAENAS   49 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~---~~~-~~~~~~l~I~~~~~~d~G-~Y~c~a~n~~   49 (68)
                      +.|+++...+....-..   ... ......+++.-. ++|.| .|.|.|.=..
T Consensus        35 v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l   86 (99)
T cd07689          35 IELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI   86 (99)
T ss_pred             EEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence            57888777665322110   000 112345666654 66666 9999987433

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=83.35  E-value=0.72  Score=30.01  Aligned_cols=31  Identities=29%  Similarity=0.318  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEA   54 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~   54 (68)
                      ..|+|+|.++.-...|.|+|.|.-.--..++
T Consensus       344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec  374 (500)
T PHA02914        344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEEC  374 (500)
T ss_pred             hhceEEeeeEEEEcCCceEEEEecCcchhhh
Confidence            3678999999999999999998755444343

>KOG0613|consensus

Probab=82.84  E-value=0.54  Score=34.09  Aligned_cols=60  Identities=17%  Similarity=0.016  Sum_probs=45.5

Q ss_pred             eEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|++++.....+.  -..+..+...+.+.|..+...+.+.|.|.|.|..|.........|.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs  428 (1205)
T KOG0613|consen  367 AQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS  428 (1205)
T ss_pred             heeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence            46777776665443  3455566677889999999999999999999999987666555544

>PHA03189 UL14 tegument protein; Provisional

Probab=82.22  E-value=9.1  Score=24.24  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=22.4

Q ss_pred             EEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          28 LSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        28 l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      |+++ +.-+-+|.|.|.+.|+.-.--.+..+.|.
T Consensus       136 LtF~-v~t~taG~Y~CvLrN~tHglv~~rf~ivt  168 (348)
T PHA03189        136 LTFR-VSTSTAGMYECVLRNETHGLVLQRFVIVT  168 (348)
T ss_pred             EEEE-EEecccceEEEEeccccceeeeEEeeeee
Confidence            4443 66778999999999987655444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	68
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-12
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-10
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	9e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-09
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-08
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-07
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	8e-07
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-06
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-05
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-04
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-06
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-05
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-05
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-05
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-04
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-04
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	7e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	8e-04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	8e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	8e-04

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 54.6 bits (132), Expect = 8e-12
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
          Q++   ++++ N    +KL+I+   +++ G Y +  EN  G  +A V +TV+
Sbjct: 47 QIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 50.8 bits (122), Expect = 2e-10
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 11 VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
                + +      T +      R +SG Y++K +N  G+DEA  E+ V
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.3 bits (118), Expect = 9e-10
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 13  SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
               V +    ++T   +    R +SG Y +  +  + KD A + I V+
Sbjct: 66  DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 47.1 bits (112), Expect = 2e-08
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
              +  N++I N P  + L +      + G Y   A N  G++  +  +   
Sbjct: 60  PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 42.0 bits (99), Expect = 6e-07
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
            + +    ++    Y +   I  +   + G Y +  EN+ GK EA+  +T+
Sbjct: 54  VLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 41.9 bits (98), Expect = 7e-07
 Identities = 8/54 (14%), Positives = 19/54 (35%)

Query: 7   PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
               ++ +   E  +  Y  ++ I+      +G YR +       D    ++ V
Sbjct: 56  AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 8/50 (16%), Positives = 17/50 (34%)

Query: 12  RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           ++  N++  +      L I      + G Y   A N  G    +  + + 
Sbjct: 144 KNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 7  PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
                 +G +E+     ++ L I D+   +SG Y  +A +  G  +  + + + 
Sbjct: 44 TEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 40.9 bits (96), Expect = 1e-06
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
          +  Y+  L + +    N+G Y + A+N  GKDE  +    +
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 41.6 bits (98), Expect = 2e-06
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
          ++R  GN ++  V     L+++ + + ++G Y   A N +GKD    ++ V 
Sbjct: 45 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           +++      +  V     L + ++  ++SG Y  +A NA+G   +   + V 
Sbjct: 139 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           ++RS    +I++  + T + I+++   + G Y+ KA N  G       IT+
Sbjct: 232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           ++R  GN ++  V     L+++ + + ++G Y   A N +GKD    ++ V
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 10/52 (19%), Positives = 23/52 (44%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           +++      +  V     L + ++  ++SG Y  +A NA+G   +   + V 
Sbjct: 331 EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 11  VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           VR   N+ I        L        N+G Y  + +N +G  E    ++VL
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 9   SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            ++RS    +I++  + T + I+++   + G Y+ KA N  G D     IT+ 
Sbjct: 423 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 39.7 bits (93), Expect = 9e-06
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITV 60
            +++  N+ I N  + T L + ++ RK  +G Y+++  N  G  +A +++ +
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 8/52 (15%), Positives = 23/52 (44%)

Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
          ++      ++ +      L+++   +++ GVY   A N  G+ E   ++ + 
Sbjct: 47 ELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 5   FCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
                +++            +  L+I  +   + G Y ++A+N+ G  E  V + V
Sbjct: 517 HKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 37.9 bits (88), Expect = 2e-05
 Identities = 8/38 (21%), Positives = 12/38 (31%)

Query: 24  YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
               L        N+G Y + A+N  G     +    L
Sbjct: 63  SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.0 bits (90), Expect = 3e-05
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 22  VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
              +  L +      N+G Y + A N  G+  A +    +
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 37.6 bits (87), Expect = 4e-05
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           +  L +      N+G Y + A N  G+  A +    +
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 36.9 bits (85), Expect = 5e-05
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 18  EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           +  +  Y  +L I D     +G YR +       D ++  +TV
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 37.9 bits (88), Expect = 5e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 10  QVRSEGNVEIVNVPYNT-KLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
            +    +  +      T   +I  +   +SG Y +  +N  G + +D  ++V I
Sbjct: 157 ALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 37.7 bits (87), Expect = 6e-05
 Identities = 7/54 (12%), Positives = 15/54 (27%)

Query: 7   PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
                    +    N+ Y ++L +  +     G Y     N+         + V
Sbjct: 356 TDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYV 409

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 37.4 bits (87), Expect = 6e-05
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 11  VRSEGNVEIVNVPYNTKLSIVD-ILRKNSGVYRIKAENASGKDEADVEITVL 61
           + + G+ +++     T L   + + RK++G Y + A+N  G D+  VE+ V 
Sbjct: 145 IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 37.4 bits (86), Expect = 9e-05
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 19  IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           IV    N  L+I  + +++ G+Y  +A +  G  + +    +
Sbjct: 713 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 35.1 bits (80), Expect = 5e-04
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 13  SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           ++    ++     T  ++V      S +Y+ +A N  G+ E  +   V
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV 547

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 37.2 bits (86), Expect = 9e-05
 Identities = 8/56 (14%), Positives = 19/56 (33%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
            +R    V+         L I +    + G Y ++  +     +  V+++     E
Sbjct: 148 AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDE 203

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
           ++  +   +  +      L I +  +K++G+Y +  ++  GKD++ +++     KE
Sbjct: 47  EISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKE 100

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 28  LSIVDILRKNSGVYRIKAENASGKDEADVEITVLI 62
            +I  +   +SG Y +  +N  G + +D  ++V I
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 12  RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           + +G+     +     L I ++  ++ G Y  +AEN  G+D     I + 
Sbjct: 243 KLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 8/34 (23%), Positives = 21/34 (61%)

Query: 27  KLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
            L I +  +K++G+Y +  ++  GKD++ +++  
Sbjct: 277 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 7   PRSQVRSEGNVEIVNVPYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITVLI 62
                 S G   I+N    T+L+IV++      G Y   A N+ G       + V +
Sbjct: 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
            ++ + D +  +SG+Y     + SG D     + V
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 36.1 bits (83), Expect = 2e-04
 Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 9   SQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
             +  +  +    V    + L+I  +   ++G +   A N +G  +    + V
Sbjct: 659 QAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            + +   ++I        L+I  +   ++G+Y+  AEN  G   +  E++V+
Sbjct: 335 PLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 25  NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
              L I +  +K++G+Y +  ++  GKD++ +++  
Sbjct: 170 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 10/49 (20%), Positives = 26/49 (53%)

Query: 13  SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            E + + +    +++L+I ++ + +   Y   AEN +G+ +A + + V 
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 25  NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
              +   D    +  VY+    N  G   A+  ++VL
Sbjct: 366 GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 34.5 bits (79), Expect = 9e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 24  YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           +N  L I ++  ++SG Y   A N  G     + + V 
Sbjct: 273 FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK 310

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 9/51 (17%), Positives = 21/51 (41%)

Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           +   G  ++        L I      +SG+Y    +N++G   +  ++T+
Sbjct: 46 AITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 22/62 (35%)

Query: 7   PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN 66
              + R+  N      P +  L    +   +SG Y  +A+N  G         +  ++ N
Sbjct: 150 DAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209

Query: 67  IN 68
           + 
Sbjct: 210 VG 211

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 34.2 bits (79), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          Q+ +    EI        L + DI + + G YR K  N  G+D +  E+ V
Sbjct: 42 QLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           QV S+G+   V+V  N  L    +  ++ GVY   A   +  +   VE+ V
Sbjct: 286 QVLSQGSNGSVSVR-NGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 22  VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE 65
             +  +L I +I  KNSG+Y  +A N++         T+ +  E
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE 465

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 15  GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
                    +N+ L+I+     ++G Y            A + +TV  L
Sbjct: 120 NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 34.3 bits (79), Expect = 5e-04
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 25  NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           +  L +  ++  + G Y    EN  G       + V+
Sbjct: 64  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 35.1 bits (80), Expect = 5e-04
 Identities = 7/43 (16%), Positives = 13/43 (30%)

Query: 18  EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           E   +     +S     +   G Y   AEN   +      + +
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 34.0 bits (78), Expect = 5e-04
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 22 VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          + +N  L+I ++   ++G Y     N    D+    + V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 34.2 bits (79), Expect = 5e-04
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 10 QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          +++    +   N      L I+D    +SG YR    N  G+      + V
Sbjct: 48 ELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 34.8 bits (80), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 22  VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
              NT+L++ +I+  + G Y  +A N +G+DE    + V 
Sbjct: 244 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 35.0 bits (80), Expect = 6e-04
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 12  RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           RS     I        LS+  +  ++SG +         K E  ++I VL
Sbjct: 132 RSPRGKNIQG---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 34.9 bits (80), Expect = 7e-04
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 22  VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
               + L I  + +++ G+Y+    N     EA  E+ +
Sbjct: 349 GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 34.0 bits (78), Expect = 7e-04
 Identities = 10/37 (27%), Positives = 13/37 (35%)

Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
          N  L I      ++G Y   A   SG+      I V 
Sbjct: 61 NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 8/44 (18%), Positives = 16/44 (36%)

Query: 20  VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL 63
            +      L I      ++G    +     G+ +AD   T+L +
Sbjct: 207 ASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 34.0 bits (77), Expect = 8e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 24  YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           Y  +L I  ++  + G YR++ +     D     I V
Sbjct: 78  YTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 34.3 bits (79), Expect = 8e-04
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 10  QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           +++S  + +I        L I +   ++SG Y + A N+ G+  +  E+ V
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 33.4 bits (77), Expect = 8e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          L I+   R ++G Y  KA N  G  + +  + V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	68
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.85
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.79
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.78
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.78
1he7_A	126	High affinity nerve growth factor receptor; transf	99.78
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.77
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.76
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.74
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.74
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.74
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.72
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.72
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.71
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.71
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.7
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.69
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.69
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.68
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.68
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.67
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.67
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.67
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.67
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.66
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.66
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.66
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.66
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.65
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.65
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.65
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.64
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.64
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.64
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.62
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.62
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.62
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.62
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.62
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.61
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.61
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.6
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.6
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.6
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.6
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.59
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.59
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.58
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.58
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.58
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.57
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.57
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.57
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.56
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.56
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.55
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.55
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.54
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.54
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.54
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.54
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.54
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.54
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.54
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.53
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.53
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.51
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.51
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.5
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.5
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.5
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.5
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.49
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.49
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.49
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.48
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.48
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.48
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.47
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.47
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.46
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.46
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.46
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.45
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.45
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.44
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.44
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.44
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.44
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.44
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.44
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.43
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.43
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.43
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.41
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.41
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.41
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.41
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.41
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.41
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.4
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.4
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.4
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.39
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.39
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.39
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.39
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.38
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.38
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.37
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.37
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.36
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.36
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.35
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.35
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.34
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.34
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.33
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.33
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.33
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.33
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.32
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.32
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.31
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.31
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.31
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.31
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.3
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.3
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.29
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.29
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.29
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.28
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.28
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.28
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.28
2ens_A	96	Advanced glycosylation END product-specific recept	99.27
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.27
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.27
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.27
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.27
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.27
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.27
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.26
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.26
3khq_A	133	B-cell antigen receptor complex-associated protei	99.26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.25
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.25
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.25
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.24
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.24
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.23
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.23
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.22
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.22
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.21
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.21
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.2
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.2
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.19
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.19
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.19
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.19
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.19
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.19
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.18
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.18
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.18
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.18
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.18
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.17
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.16
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.15
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.15
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.15
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.15
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.15
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.14
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.13
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.13
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.13
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.13
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.13
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.13
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.13
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.12
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.12
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.1
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.09
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.09
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.08
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.06
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.06
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.05
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.05
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.03
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.03
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.02
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.02
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.02
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.02
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.02
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.02
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.01
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.01
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.01
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.01
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.01
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.01
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.01
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.01
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.0
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.99
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.99
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.99
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.99
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.98
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.98
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.98
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.98
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.98
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.97
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.97
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.97
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.97
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.96
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.96
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.95
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.95
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.95
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.94
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.94
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.94
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.94
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.93
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.93
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.93
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.92
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.92
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.92
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.92
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.91
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.91
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.91
1xt5_A	135	Variable region-containing chitin-binding protein	98.91
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.91
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.91
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.91
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.91
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.9
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.9
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.9
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.9
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.9
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.89
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.89
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.89
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.88
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.88
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.88
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.88
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.88
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.88
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.88
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.87
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.87
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.87
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.87
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.87
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.87
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.87
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.86
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.86
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.86
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.85
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.85
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.84
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.84
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.84
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.84
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.83
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.83
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.83
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.82
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.82
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.82
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.82
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.82
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.82
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.81
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.81
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.8
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.8
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.79
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.79
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.79
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.79
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.79
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.79
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.79
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.78
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.78
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.78
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.77
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.77
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.77
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.76
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.76
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.76
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.76
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.75
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.75
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.75
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.75
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.75
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.75
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.74
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.74
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.74
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.73
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.73
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.73
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.73
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.72
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.72
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.71
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.71
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.69
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.69
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.69
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.69
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.69
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.69
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.68
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.68
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.67
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.67
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.67
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.67
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.67
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.67
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.66
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.66
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.66
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.65
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.65
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.65
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.64
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.64
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.64
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.63
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.63
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.63
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.63
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.62
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.62
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.62
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.61
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.61
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.61
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.61
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.6
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.6
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.6
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.6
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.59
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.59
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.58
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.58
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.58
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.58
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.58
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.58
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.57
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.57
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.57
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.57
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.57
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.57
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.57
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.56
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.56
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.55
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.55
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.54
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.54
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.53
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.53
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.52
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.51
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.51
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.5
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.5
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.5
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.5
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.49
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.49
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.48
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.48
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.48
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.48
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.47
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.47
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.47
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.46
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.46
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.46
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.46
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.45
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.45
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.45
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.44
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.43
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.43
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.42
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.41
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.41
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.41
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.41
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.4
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.39
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.38
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.37
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.37
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	98.37
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.36
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.36
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.36
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.35
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.35
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.34
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.34
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.34
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.33
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	98.32
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.31
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.31
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.31
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	98.31
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.29
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.29
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.29
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.28
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	97.61
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.28
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.28
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.27
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.27
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.27
3i84_A	98	Cervical EMMPRIN; CD147, dimerization, cell adhesi	98.27
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.26
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.26
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.25
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.25
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.24
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.23
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.23
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.23
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.22
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.22
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.21
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.19
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.18
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.18
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.18
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.17
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.15

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.85  E-value=1.1e-20  Score=98.15  Aligned_cols=63  Identities=22%  Similarity=0.196  Sum_probs=58.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|||.+|..+.++.+...+..+.|.|.+++.+|+|.|+|.|.|.+|..++++.|.|.++|
T Consensus        45 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           45 VVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             EEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence            789999999998899998888888899999999999999999999999999999999999987

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.79  E-value=1.6e-18  Score=89.91  Aligned_cols=66  Identities=23%  Similarity=0.335  Sum_probs=60.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|+|.++....++.+....+.+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.++|.+.
T Consensus        39 i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           39 CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             EEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCC
T ss_pred             EEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCCC
Confidence            689999999987788988877778899999999999999999999999999999999999987653

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.78  E-value=3.5e-18  Score=87.63  Aligned_cols=61  Identities=28%  Similarity=0.452  Sum_probs=55.3

Q ss_pred             eEEEeCCEEeccC--CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSE--GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|||++|...  .++.+...++.+.|.|.+++.+|+|.|+|.|.|.+|.+++++.|.|.+
T Consensus        37 v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           37 VTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEEEE
Confidence            7899999999754  378888888889999999999999999999999999999999999865

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=2.4e-18  Score=88.26  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=57.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      .+.|+|||.+|..+.++.+...+..+.|.|.+++.+|+|.|+|.|.|.  ..++++.|.|.++|.
T Consensus        36 ~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           36 PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             CEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEECCSC
T ss_pred             eEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEeCCCC
Confidence            378999999999889999888777889999999999999999999998  667889999999885

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.78  E-value=1.9e-18  Score=92.52  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=56.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC-------CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP-------YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~-------~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      ++|+|||++|..+.++.+....       ....|.|.+++..|+|.|+|.|.|..|.+.+++.|.|.+.|...
T Consensus        32 I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~~~  104 (126)
T 1he7_A           32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEF  104 (126)
T ss_dssp             EEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTTSC
T ss_pred             EEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCCCC
Confidence            7899999999987776554332       24679999999999999999999999999999999999988653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=7.1e-18  Score=87.97  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++. ..++.+......+.|.|.++++.|+|.|+|.|.|..|..++.+.|.|.++|+
T Consensus        56 i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~  118 (118)
T 2e7c_A           56 VVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG  118 (118)
T ss_dssp             EEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCCC
T ss_pred             EEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCCC
Confidence            68999999997 5677777777788999999999999999999999999999999999999985

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.76  E-value=4.4e-18  Score=87.46  Aligned_cols=65  Identities=18%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             eEEEeCCEEeccCCCEEEE--EeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIV--NVP---YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~--~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      ++|+|||.+|..+.++.+.  ...   ..+.|.|.+++.+|+|.|+|.|.|..|.+++++.|.|.++|..
T Consensus        33 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P~~  102 (103)
T 1wwb_X           33 LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred             EEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCCCC
Confidence            7899999999877664332  222   1345999999999999999999999999999999999998863

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.74  E-value=5.5e-17  Score=82.47  Aligned_cols=63  Identities=17%  Similarity=0.225  Sum_probs=57.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++....++.+......+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.+.+
T Consensus        40 i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~  102 (103)
T 3qp3_A           40 VKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD  102 (103)
T ss_dssp             EEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             EEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEECCC
Confidence            689999999998888888888888899999999999999999999999999999999998753

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.74  E-value=3.4e-17  Score=81.95  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      .+.|+|||.+|..++++.+...++.+.|.|.+++.+|+|.|+|.|.|    +..++.|.|.+|
T Consensus        26 ~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l~V~eP   84 (84)
T 2lu7_A           26 PVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLVSVEEP   84 (84)
T ss_dssp             TCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEEEECCC
T ss_pred             EEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEEEEEECC
Confidence            37899999999988999998888888999999999999999998854    567788888653

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.72  E-value=1e-16  Score=81.34  Aligned_cols=58  Identities=12%  Similarity=0.051  Sum_probs=51.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .+.|+|||.+|..+.++.+...+..+.|.|.+++.+|+|.|+|.|.|.    .+++.|.|.+
T Consensus        35 ~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~----~~sa~L~V~~   92 (93)
T 1waa_A           35 HGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT----KSAANLKVKE   92 (93)
T ss_dssp             CCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE----EEEEEEEEEC
T ss_pred             eEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC----cEEEEEEEEc
Confidence            378999999999888999888888889999999999999999999884    4677787765

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.72  E-value=5e-17  Score=84.71  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=55.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++..+.+..+....    ..+.|.|.+++..|+|.|+|.|.|..|...+++.|.|.+.|..
T Consensus        37 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  105 (118)
T 1wwc_A           37 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP  105 (118)
T ss_dssp             EEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCCC
T ss_pred             EEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEEccCCCc
Confidence            6899999999877766654432    3568999999999999999999999999999999999888754

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.71  E-value=1.9e-16  Score=79.88  Aligned_cols=62  Identities=24%  Similarity=0.263  Sum_probs=57.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++....++.+....+.+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.+.
T Consensus        34 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~   95 (97)
T 2bk8_A           34 VTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV   95 (97)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEETTT
T ss_pred             EEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEEEec
Confidence            68999999999888888877778889999999999999999999999999999999998764

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.71  E-value=3.8e-16  Score=78.77  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             eEEEeCCEEeccCCCEEEE-EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIV-NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~-~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++....++.+. ...+.+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.++
T Consensus        37 v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~   99 (99)
T 1g1c_A           37 CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK   99 (99)
T ss_dssp             EEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEEecC
Confidence            6899999999877776554 3566788999999999999999999999999999999998764

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.70  E-value=3.9e-16  Score=78.62  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=56.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++..+.++.+....+.+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|..
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           38 AIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEEEe
Confidence            6899999999888899888888888999999999999999999999999999999998864

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.69  E-value=2.4e-16  Score=79.59  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++....+.. .....+.+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~e  100 (100)
T 2kdg_A           37 VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE  100 (100)
T ss_dssp             EEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEEecC
Confidence            68999999998655433 3334556789999999999999999999999999999999999875

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=6e-16  Score=78.93  Aligned_cols=63  Identities=10%  Similarity=0.077  Sum_probs=55.1

Q ss_pred             CeEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|+|.++....  ++.+........|.|.+++.+|+|.|+|.|.|    ....+.|.|.++|.+.
T Consensus        37 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~p~  101 (103)
T 1x44_A           37 NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKSGPS  101 (103)
T ss_dssp             CCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEECCCSCC
T ss_pred             eEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEEeCCCCCC
Confidence            378999999998777  77888877888999999999999999999988    5788889999988753

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=2.6e-16  Score=80.14  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|+|.++....++.+......+.|.|.+++..|+|.|+|.|.|    ....+.|.|.++|.++
T Consensus        39 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           39 VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA----SKSTASLHVEEKASGP  100 (103)
T ss_dssp             CCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS----CEEEEEEEECCCSSSS
T ss_pred             EEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc----CCcEEEEEEeCCCCCC
Confidence            6899999999888899888877788999999999999999999999    4788899999988765

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=7.9e-16  Score=79.35  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=54.9

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|+|.++..+.++.+...+....|.|.+++.+|+|.|+|.|.|    ....+.|.|.++|..+
T Consensus        43 ~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~~~  105 (113)
T 2cpc_A           43 EVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEPPVRI  105 (113)
T ss_dssp             CCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEEEECCCCCC
T ss_pred             eEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec----CcEEEEEEEecCCchh
Confidence            37899999999877888887766678999999999999999999999    6678889999888654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3e-16  Score=80.68  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=56.9

Q ss_pred             eEEEeCCEEecc-CCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|+|.++.. ..++.+... ++...|.|.+++..|+|.|+|.|.|..|...+.+.|.|.++|...
T Consensus        40 v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           40 IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             EEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCSCCS
T ss_pred             EEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCCCCC
Confidence            689999999975 467777665 445689999999999999999999999999999999999887653

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.67  E-value=9.6e-16  Score=79.99  Aligned_cols=65  Identities=17%  Similarity=0.200  Sum_probs=56.5

Q ss_pred             eEEEeCCEEecc-CCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++.. ..++.+.... +.+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.+
T Consensus        47 v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           47 LFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCC
T ss_pred             EEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCC
Confidence            689999999974 4677776554 3558999999999999999999999999999999999998865

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.67  E-value=1.4e-15  Score=78.52  Aligned_cols=63  Identities=14%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|+|.+|..+.++.+......+.|.|.+++.+|+|.|+|.|    |.....+.|.|.++|..+
T Consensus        48 ~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~~~  110 (113)
T 2edh_A           48 PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGP  110 (113)
T ss_dssp             CCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEECCCCCSS
T ss_pred             cEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEeCCCCCc
Confidence            378999999999888999888887889999999999999999999    888899999999988765

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=9.4e-16  Score=78.15  Aligned_cols=61  Identities=13%  Similarity=0.085  Sum_probs=53.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++....++.+......+.|.|.+++..|+|.|+|.|.|..+    .+.|.|.++|.+
T Consensus        41 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~----~~~l~V~~~P~p  101 (104)
T 2e6p_A           41 ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA----FFGVTVQDPSGP  101 (104)
T ss_dssp             CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC----CEEEEEECCCCS
T ss_pred             cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE----EEEEEEcCCCCC
Confidence            5899999999877888888777788999999999999999999999854    677788888765

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.66  E-value=8.6e-16  Score=77.27  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++....++.+.  .  ..|.|.+++..|+|.|+|.|.|..|.....+.|.|.+++..
T Consensus        31 v~W~k~g~~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~   91 (95)
T 4hwu_A           31 ISWTKDGVHLGPNNRTVLI--G--EYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAAEN   91 (95)
T ss_dssp             EEEEETTEEECCCSSEEEE--T--TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC---
T ss_pred             EEEEECCEECCCCceEEEe--C--CEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeCCccc
Confidence            6899999999877777653  2  37999999999999999999999999999999999988764

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.66  E-value=7.8e-16  Score=78.15  Aligned_cols=61  Identities=13%  Similarity=0.127  Sum_probs=55.4

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      .+.|+|||.++..+.++.+......+.|.|.+++.+|+|.|+|.|    |...+.+.|.|.++|.
T Consensus        38 ~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           38 EVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS   98 (100)
T ss_dssp             CEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEECCSCC
T ss_pred             eEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEEecCCC
Confidence            478999999998888998888888889999999999999999999    8888999999999885

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.65  E-value=3e-15  Score=81.19  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++....++.+... .+.+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|...|..
T Consensus        73 v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A           73 VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             EEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---
T ss_pred             EEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcC
Confidence            689999999987788877654 34678999999999999999999999999999999999987643

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=76.56  Aligned_cols=61  Identities=21%  Similarity=0.231  Sum_probs=51.7

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++....+ +.+....+.+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.+
T Consensus        37 v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           37 VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEEEC
Confidence            689999999976543 4444444566899999999999999999999999999999999876

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.65  E-value=3.6e-16  Score=79.21  Aligned_cols=56  Identities=14%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|||++|..++++.+...++.+.|.|.+++.+|+|.|+|.|.|.    .+++.|.|
T Consensus        36 ~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~ltV   91 (91)
T 2lvc_A           36 PVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVTI   91 (91)
T ss_dssp             CCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC----EEEEEEEC
T ss_pred             EEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce----EEEEEEEC
Confidence            378999999999889999988888899999999999999999998665    55566554

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.64  E-value=4.7e-16  Score=79.47  Aligned_cols=65  Identities=14%  Similarity=0.196  Sum_probs=48.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|+|.++....++.+  ....+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.++|..+
T Consensus        41 ~i~W~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           41 QIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             CEEEEESSSBCCCBTTEEE--ETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC-----
T ss_pred             eEEEEECCeEcccCCCeEE--eCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCCccc
Confidence            3789999999986666654  3344679999999999999999999999999999999999988764

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.64  E-value=2.3e-16  Score=81.23  Aligned_cols=60  Identities=18%  Similarity=0.388  Sum_probs=55.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|+|.++....++.+........|.|.+++..|+|.|+|.|.|..|.....+.|.|.
T Consensus        46 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           46 VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            679999999988888888877778899999999999999999999999999999999885

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7.1e-16  Score=79.30  Aligned_cols=62  Identities=8%  Similarity=-0.047  Sum_probs=54.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|||.+|..+.++.+......+.|.|.+++.+|+|.|+|.|.|    ..+++.|.|.++|...
T Consensus        41 v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~a~L~V~~~p~~~  102 (104)
T 2eny_A           41 AMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG----LTSKASLIVRERSGPS  102 (104)
T ss_dssp             BCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT----EEEEECEEEECCCSSC
T ss_pred             eEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC----eeEEEEEEEeCCCcCC
Confidence            6899999999988898888878888999999999999999998844    5788999999988653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.62  E-value=1.5e-15  Score=76.10  Aligned_cols=57  Identities=25%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             eEEEeCC--EEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPR--SQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g--~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|  .++...  ..+......+.|.|.+++++|+|.|+|.|.|..|..++.+.|.|
T Consensus        34 i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           34 ATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCCcccCCc--EEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEE
Confidence            7899999  888754  33445567789999999999999999999999999999999887

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=6.4e-16  Score=79.28  Aligned_cols=66  Identities=17%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|+|.++....+..+... .+.+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.+.
T Consensus        41 v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           41 LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             EECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCCSS
T ss_pred             EEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCCCC
Confidence            689999999986665544433 345789999999999999999999999999999999999988653

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=4.4e-15  Score=75.52  Aligned_cols=63  Identities=13%  Similarity=0.148  Sum_probs=56.4

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|+|.++..+.++.+......+.|.|.+++.+|+|.|+|.    .|...+.+.|.|.++|.++
T Consensus        38 ~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           38 TVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             CCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSSCBCCEEEEEECSCCCC
T ss_pred             eEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCCceEEEEEEEeCccCCC
Confidence            37899999999988899888777788999999999999999997    7888889999999988765

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=77.23  Aligned_cols=60  Identities=17%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++....++.+.    ...|.|.+++..|+|.|+|.|.|..|.....+.|.|.+.|.
T Consensus        34 i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~   93 (99)
T 2cr3_A           34 INWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP   93 (99)
T ss_dssp             EEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSCCS
T ss_pred             EEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecCCC
Confidence            7899999999876776654    24899999999999999999999999999999999988764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.1e-14  Score=81.56  Aligned_cols=65  Identities=18%  Similarity=0.232  Sum_probs=58.7

Q ss_pred             eEEEeCCEEeccC--CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSE--GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.+|...  .++.+......+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.+
T Consensus        50 i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~  116 (215)
T 3mtr_A           50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSS  116 (215)
T ss_dssp             EEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCC
T ss_pred             EEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCC
Confidence            7899999999865  5778877777889999999999999999999999999999999999988865

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5.4e-15  Score=77.59  Aligned_cols=64  Identities=11%  Similarity=0.041  Sum_probs=53.4

Q ss_pred             CeEEEeCCEEeccCC----------CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEG----------NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~----------~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|||++|..++          ++.+...+..+.|.|.+++.+|+|.|+|...+   ...+++.|.|.++|..+
T Consensus        37 ~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~---~~~ssA~L~V~~~p~~~  110 (112)
T 2e6q_A           37 QGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCP---GVQDSAALTIQESSGPS  110 (112)
T ss_dssp             CCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEET---TEEEEEEEEEECSSCSC
T ss_pred             eEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEEC---CeeEEEEEEEeCCCccc
Confidence            368999999999877          88887766788999999999999999774443   45678999999998754

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.4e-16  Score=79.20  Aligned_cols=60  Identities=12%  Similarity=0.166  Sum_probs=50.7

Q ss_pred             CeEEEeCCEEeccCC----CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           1 MFDIFCPRSQVRSEG----NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~----~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      .+.|+|||.++..+.    ++.+......+.|.|.+++.+|+|.|+|.|.|    ..+.+.|.|.++|
T Consensus        38 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~~~P  101 (101)
T 2edk_A           38 QVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ  101 (101)
T ss_dssp             CCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS----CEECCBEEEECCC
T ss_pred             EEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC----CcEEEEEEEeCCC
Confidence            378999999998666    66777777778999999999999999999988    4566778888876

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.60  E-value=7.4e-15  Score=93.45  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      ++|+|+|.+|..+.++.+...++.+.|.|.++.+.|+|.|+|+|.|.+|.+++.+.|.|.
T Consensus       514 v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l~Vt  573 (573)
T 3uto_A          514 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT  573 (573)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEEEEC
Confidence            689999999999999999999999999999999999999999999999999999999873

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-14  Score=73.25  Aligned_cols=58  Identities=12%  Similarity=0.217  Sum_probs=51.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .+.|+|+|.++..+.++.+........|.|.+++..|+|.|+|.|    |.....+.|.|.+
T Consensus        38 ~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~V~e   95 (95)
T 2k1m_A           38 KVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVIE   95 (95)
T ss_dssp             CCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEEEEC
T ss_pred             eEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----CCceEEEEEEEeC
Confidence            378999999998888888887777889999999999999999999    6777888888864

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-14  Score=73.48  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      .+.|+|+|.++....++.+......+.|.|.+++..|+|.|+|.|.|    ...++.|.|.++|
T Consensus        41 ~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~----~~~~~~l~V~~p~  100 (102)
T 2eo1_A           41 EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFRLQVAGQC  100 (102)
T ss_dssp             CCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT----EECCEEEEEESCC
T ss_pred             ceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC----CcEEEEEEEeCCC
Confidence            37899999999887888888777788999999999999999999944    5567888888865

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.60  E-value=2.4e-14  Score=79.44  Aligned_cols=61  Identities=15%  Similarity=0.261  Sum_probs=55.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++..+.++.+... +..+.|.|.+++..|+|.|+|.|.|..|.....+.|.|..
T Consensus       149 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          149 VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence            689999999998888888776 5578999999999999999999999999999999999874

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.59  E-value=9.5e-15  Score=74.81  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      .+.|+|+|.++..+.++.+......+.|.|.+++.+|+|.|+|.|.|    ....+.|.|.++|..+
T Consensus        37 ~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~~~   99 (108)
T 2dm7_A           37 PVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ----ERTSATLTVRALPARF   99 (108)
T ss_dssp             CCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT----EEEEEECEEECCCSSC
T ss_pred             eeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC----CEEEEEEEEecCCHHH
Confidence            37899999999888888888878888999999999999999999944    6788889998876543

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.59  E-value=3.8e-15  Score=75.06  Aligned_cols=55  Identities=18%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++..+.++.+.    ...|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus        40 i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           40 INWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEEE
Confidence            6899999999877776654    347999999999999999999999999999988877

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=2.7e-15  Score=75.87  Aligned_cols=60  Identities=15%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             eEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++.. ..++.+.   ....|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|
T Consensus        40 v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           40 ISWLKEGFTFPGRDPRATIQ---EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             EEEEESSSEESSSCSSCEEC---TTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESCC
T ss_pred             EEEEECCEECCCCCCCEEEc---CCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecCC
Confidence            689999999873 3444432   22369999999999999999999999999999999999876

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.58  E-value=1.3e-14  Score=79.85  Aligned_cols=61  Identities=23%  Similarity=0.317  Sum_probs=56.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcC-CCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVD-ILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~-~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++....++.+......+.|.|.+ ++..|+|.|+|.|.|..|..+..+.|.|.|
T Consensus       136 i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          136 ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            7899999999877888887777788999999 999999999999999999999999999875

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.58  E-value=1.7e-14  Score=90.54  Aligned_cols=66  Identities=21%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .+.|+|+|.+|..+.++.+......+.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|..+|.+
T Consensus       415 ~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~  480 (570)
T 3b43_A          415 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF  480 (570)
T ss_dssp             CCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEE
T ss_pred             EEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcc
Confidence            378999999999888888887777889999999999999999999999999999999999888764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.57  E-value=2.6e-14  Score=78.33  Aligned_cols=62  Identities=19%  Similarity=0.335  Sum_probs=56.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCC-CCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILR-KNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~-~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+++|.++....++.+........|.|.++.+ +|+|.|+|.|.|..|.....+.|.|.++
T Consensus       135 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k  197 (197)
T 3lcy_A          135 MTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK  197 (197)
T ss_dssp             EEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             eEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence            6899999999988888888877778999999996 8999999999999999999999999875

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=9.5e-15  Score=74.76  Aligned_cols=59  Identities=19%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++..+.++.+......+.|.|.+++.+|+|.|+|.|.|.  ...+.+.|.|.+
T Consensus        39 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           39 GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAKLNFLE   97 (106)
T ss_dssp             EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBCEEEEC
T ss_pred             eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC--CceEEEEEEEEE
Confidence            68999999998888888888777889999999999999999999999  444555555554

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=8.3e-15  Score=76.12  Aligned_cols=62  Identities=16%  Similarity=0.048  Sum_probs=52.1

Q ss_pred             eEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++.. ..++.+... +  .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.|.+
T Consensus        40 i~W~k~g~~~~~~~~~~~~~~~-~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           40 ILWRKDGVLVSTQDSRIKQLEN-G--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EEEEESSSBCCTTSTTEEEEET-T--EEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCC
T ss_pred             EEEEECCEECcCCCCeEEEccC-C--EEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCC
Confidence            689999999864 456655432 2  7999999999999999999999999999999999887643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.56  E-value=4.6e-14  Score=81.26  Aligned_cols=65  Identities=20%  Similarity=0.323  Sum_probs=59.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++..+.++.+....+...|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|.+
T Consensus        37 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~  101 (284)
T 2rik_A           37 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRF  101 (284)
T ss_dssp             EEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEE
T ss_pred             EEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcc
Confidence            78999999999888888887788889999999999999999999999999999999999988754

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.56  E-value=5e-14  Score=81.12  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=56.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+++|.++..+.++.+......+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.+
T Consensus       224 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  284 (284)
T 2rik_A          224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA  284 (284)
T ss_dssp             EEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             EEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence            7899999999988888888888888999999999999999999999999999999998853

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.55  E-value=7.8e-15  Score=82.87  Aligned_cols=57  Identities=14%  Similarity=0.289  Sum_probs=48.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|||.+|..+.++.  ...+...|.|.+++.+|+|.|+|.|.|.+|.+++++.|.+
T Consensus       149 i~W~k~g~~l~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          149 IVWYKDEREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEEEETTEEECCCCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEECCEECCCCCceE--cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            78999999998665542  2344567999999999999999999999999999999864

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=4.3e-14  Score=72.65  Aligned_cols=58  Identities=10%  Similarity=0.137  Sum_probs=48.5

Q ss_pred             CeEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .+.|+|||.+|..+ .++.+...+..+.|.|.+++.+|+|.|+|.|    |...+.+.|.|.+
T Consensus        46 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~e  104 (104)
T 1pd6_A           46 EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVKE  104 (104)
T ss_dssp             CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE----TTEEECCEEEEEC
T ss_pred             EEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE----CCCcEEEEEEEeC
Confidence            37899999999876 7888887777889999999999999999999    4456667777754

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.54  E-value=5.5e-14  Score=81.76  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=55.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++..+.++.+... +..+.|.|.+++..|+|.|+|.|.|..|..+..+.|.|..
T Consensus       254 i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            689999999988888877665 5567999999999999999999999999999999999874

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.54  E-value=5.7e-14  Score=88.22  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=59.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++..+.++.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+
T Consensus       323 v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~  387 (570)
T 3b43_A          323 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVF  387 (570)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEE
T ss_pred             EEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCee
Confidence            78999999999888888877778889999999999999999999999999999999999988754

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=3.1e-14  Score=71.80  Aligned_cols=57  Identities=23%  Similarity=0.234  Sum_probs=48.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.++......   ...+...|.|.+++..|+|.|+|.|.|..|...+.+.|.|
T Consensus        42 ~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           42 RITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             CCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEE
T ss_pred             eEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEE
Confidence            37899999998754432   2455678999999999999999999999999988888876

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.54  E-value=6.1e-14  Score=76.90  Aligned_cols=59  Identities=20%  Similarity=0.342  Sum_probs=54.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++|.++..+.++.+...+..+.|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus       135 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            68999999999888888887777889999999999999999999999999999999887

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.54  E-value=6.6e-15  Score=74.33  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|+|.++....+.. .......+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|+
T Consensus        40 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~Vv  100 (100)
T 3caf_A           40 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV  100 (100)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEEC
Confidence            68999999997543321 1223334579999999999999999999999999999998874

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.54  E-value=1.7e-14  Score=75.11  Aligned_cols=64  Identities=16%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             eEEEeCCEEecc-----CCCEEEEEe---CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRS-----EGNVEIVNV---PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~-----~~~~~~~~~---~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++|..+..     ..+......   ...+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.++|.
T Consensus        42 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V~~~p~  113 (122)
T 3s35_X           42 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF  113 (122)
T ss_dssp             EEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEC
T ss_pred             EEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEEeccCe
Confidence            689999875431     111111111   1346799999999999999999999999999999999998874

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.54  E-value=2.2e-14  Score=72.90  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=54.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++..+.++.+......+.|.|.+++.+|+|.|+|.    +|.....+.|.|.++|..
T Consensus        39 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~~~p~~   99 (103)
T 2e7b_A           39 VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLTVTALPSG   99 (103)
T ss_dssp             CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCBCEEEECCCCC
T ss_pred             eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEEEEEEEEEecccc
Confidence            6899999999878899888877788999999999999999998    677888899999998854

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.53  E-value=1e-13  Score=75.91  Aligned_cols=64  Identities=13%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++....++.+......+.|.|.+++..|+|.|+|.|.|..|.....+.|.|...|.
T Consensus        39 v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~  102 (197)
T 3lcy_A           39 IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQ  102 (197)
T ss_dssp             EEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE
T ss_pred             EEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCC
Confidence            6899999999888888888777788999999999999999999999999999999998887654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=5.6e-14  Score=75.11  Aligned_cols=63  Identities=13%  Similarity=0.221  Sum_probs=49.0

Q ss_pred             eEEEeCCE-Eec--cCCCEEEEEe--C----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc-CC
Q psy7044           2 FDIFCPRS-QVR--SEGNVEIVNV--P----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI-LK   64 (68)
Q Consensus         2 ~~W~k~g~-~l~--~~~~~~~~~~--~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~-~p   64 (68)
                      +.|+|++. ++.  .+.++.+...  .    ..+.|.|.++++.|+|.|+|.|.|..|..++.+.|.|.. +|
T Consensus        42 V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~  114 (126)
T 2dav_A           42 IKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG  114 (126)
T ss_dssp             EEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEecCC
Confidence            78999752 221  2356665421  1    247899999999999999999999999999999999998 44

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.52  E-value=4.9e-15  Score=77.45  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=53.0

Q ss_pred             eEEEeCCEEecc--CCCEEEE--EeCC--eEEEEEcCCCCCCC-EEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS--EGNVEIV--NVPY--NTKLSIVDILRKNS-GVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~--~~~~--~~~l~I~~~~~~d~-G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+++|.+|..  ..++.+.  ...+  .+.|.|.+++..|+ |.|+|.|.|..|...+.+.|.|.+.+
T Consensus        46 i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           46 IAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             EEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             eEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence            789999999974  3677663  3344  56899999999999 99999999999999999999988653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.51  E-value=7.1e-14  Score=83.36  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=53.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC-------CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP-------YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~-------~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++..+.....+...       ....|.|.+++..|+|.|+|.|.|..|.+++++.|.|.++|
T Consensus       278 i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             EEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             EEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            7899999999866665544322       25679999999999999999999999999999999998877

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.5e-14  Score=75.03  Aligned_cols=62  Identities=16%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .+.|+|||.++..+.++.+... ++.+.|.|.+++.+|+|.|+|.    +|.....+.|.|.++|..
T Consensus        44 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~L~V~~~p~~  106 (115)
T 2cr6_A           44 PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSV  106 (115)
T ss_dssp             SCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEE----ETTEECCEEEEEECCSSC
T ss_pred             ccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEE----ECCeeEEEEEEEECCCce
Confidence            3789999999987777766533 4567899999999999999999    577888899999988864

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=79.78  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=50.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++|.++..+.++.+.  ...+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|.++|.
T Consensus       226 v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          226 ISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             EEEEETTEECCCTTTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             EEEEECCEECcCCccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence            6899999999877776543  3446899999999999999999999999999999999988754

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.50  E-value=3.2e-13  Score=68.52  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=49.7

Q ss_pred             CeEEEeCCE-Eec-------cCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           1 MFDIFCPRS-QVR-------SEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         1 ~~~W~k~g~-~l~-------~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      .+.|++++. .+.       ...++.+... .....|.|.+++.+|+|.|+|.|.| .|.....+.|.|.++|
T Consensus        37 ~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           37 SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             CEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             EEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            368998875 222       2346665433 3467899999999999999999999 8999999999999877

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=9.8e-14  Score=73.44  Aligned_cols=63  Identities=17%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             CeEEEeCC-EEecc--CCCEEEEEe-C-----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           1 MFDIFCPR-SQVRS--EGNVEIVNV-P-----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         1 ~~~W~k~g-~~l~~--~~~~~~~~~-~-----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      .|.|+|+. .++..  +.++.+... +     ..+.|.|.++++.|+|.|+|.|.|..|..++.+.|.|.++
T Consensus        46 ~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           46 TIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             cEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            47899975 23322  245555322 1     1478999999999999999999999999999999999874

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.50  E-value=2.5e-13  Score=78.86  Aligned_cols=65  Identities=22%  Similarity=0.313  Sum_probs=59.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcC-CCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVD-ILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~-~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+++|.++....++.+........|.|.+ ++..|+|.|+|.|.|..|.....+.|.|.++|.+
T Consensus       136 i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  201 (305)
T 2nzi_A          136 ITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDP  201 (305)
T ss_dssp             EEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCC
T ss_pred             EEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCC
Confidence            6899999999877888887777788999999 9999999999999999999999999999988764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.49  E-value=5.1e-14  Score=82.43  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=48.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.+|...  ...  .+  +.|.|.+++.+|+|.|+|.|.|..|...+++.|.|.++|.
T Consensus       250 v~W~~~~~~l~~~--~~~--~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          250 YNWSTTMGPLPPF--AVA--QG--AQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP  307 (313)
T ss_dssp             EEEEETTBSCCTT--EEE--ET--TEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred             EEEEECCEECCCc--eEE--eC--CEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence            6899999998742  221  12  3699999999999999999999999999999999998764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.49  E-value=2.2e-13  Score=75.53  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|+|.++..+.++.+........|.|.+++..|+|.|+|.|.|..|.....+.|.|.
T Consensus        35 i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           35 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             EEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            789999999998889988888888889999999999999999999999988888777543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.49  E-value=2.8e-13  Score=69.52  Aligned_cols=61  Identities=20%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             eEEEeCCEE-ecc--CCCEEEEEe--C----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQ-VRS--EGNVEIVNV--P----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~-l~~--~~~~~~~~~--~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|++.. +..  ..++.+...  .    ....|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.+
T Consensus        39 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (108)
T 3cx2_A           39 VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE  108 (108)
T ss_dssp             EEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEeC
Confidence            689998832 221  245554321  1    246899999999999999999999999999999999863

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.48  E-value=3.1e-13  Score=75.52  Aligned_cols=64  Identities=20%  Similarity=0.205  Sum_probs=50.0

Q ss_pred             eEEEeCCEEeccC---CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSE---GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~---~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++...   .++........+.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|...|.
T Consensus       140 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             EEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence            6899999999753   46666666677899999999999999999999999977 5568888876654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.48  E-value=3.2e-13  Score=80.57  Aligned_cols=65  Identities=15%  Similarity=0.191  Sum_probs=56.8

Q ss_pred             eEEEeC--CEEecc-----CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCP--RSQVRS-----EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~--g~~l~~-----~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+  |.+|..     ..++.+......+.|.|.+++++|+|.|+|.|.|..|..+..+.|.|..+|..
T Consensus        32 v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~  103 (389)
T 2jll_A           32 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF  103 (389)
T ss_dssp             EEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEE
T ss_pred             EEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEE
Confidence            689999  999875     46777776667789999999999999999999999999999999999887753

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.48  E-value=2.5e-14  Score=83.41  Aligned_cols=60  Identities=18%  Similarity=-0.011  Sum_probs=50.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++.....     ..+.+.|.|.+++.+|+|.|+|.|.|.+|..++++.|.|.++|..
T Consensus       245 v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~~  304 (308)
T 4fom_A          245 SVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPHH  304 (308)
T ss_dssp             EECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC--
T ss_pred             EEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCCC
Confidence            689999988864322     234567889999999999999999999999999999999999964

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.47  E-value=5.1e-13  Score=75.39  Aligned_cols=55  Identities=7%  Similarity=0.159  Sum_probs=45.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|||++|..+.++.+....  +...|.|.+++.+|+|.|+|.|.|  |.+...+.+
T Consensus        35 i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~   91 (207)
T 3rbs_A           35 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTV   91 (207)
T ss_dssp             EEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEEEE
T ss_pred             EEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEEEE
Confidence            7899999999888888777654  567899999999999999999999  555555544

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.47  E-value=2.1e-13  Score=78.62  Aligned_cols=62  Identities=16%  Similarity=0.257  Sum_probs=50.8

Q ss_pred             eEEEeCCEEeccCCC--EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGN--VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~--~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+++|.++.....  ..+......+.|.|.+++..|+|.|+|.|.|..|...+.+.|.|.++
T Consensus       228 i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~k  291 (291)
T 1qz1_A          228 MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK  291 (291)
T ss_dssp             EEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEcC
Confidence            789999999986531  12233455678999999999999999999999999999999999864

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.46  E-value=2e-13  Score=82.18  Aligned_cols=57  Identities=19%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|||.+|....++.+.  .  ..|.|.+++.+|+|.|+|.|.|.+|...+++.|.|..
T Consensus       327 i~W~k~g~~l~~~~~~~~~--~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          327 YRWLKNGDPLLTRDRIQIE--Q--GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EEEEETTEECCCBTTEEEE--T--TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEECCEECCCCccEEEe--C--CEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence            7899999999877787653  2  2799999999999999999999999999999999864

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.46  E-value=1.1e-12  Score=78.26  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=57.1

Q ss_pred             eEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.+|....  ++.+......+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.+.|..
T Consensus       132 i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  198 (389)
T 2jll_A          132 IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSS  198 (389)
T ss_dssp             EEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCC
T ss_pred             EEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCC
Confidence            78999999998543  677777777789999999999999999999999999999999998887764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.46  E-value=2e-12  Score=70.97  Aligned_cols=60  Identities=23%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             eEEEe--CCEEec---cCCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFC--PRSQVR---SEGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k--~g~~l~---~~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|++  +|.++.   ...++.+......+.|.|.+++ ..|+|.|+|.|.|..|...+++.|.|.
T Consensus       124 i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          124 WMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            68999  898875   4577888777777899999999 799999999999999999999998875

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.45  E-value=1.5e-13  Score=79.78  Aligned_cols=57  Identities=14%  Similarity=0.313  Sum_probs=48.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++..+.++.+.  .+.+.|.|.+++..|+|.|+|.|.|..|...+++.|.|
T Consensus       254 v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          254 IVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             EEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            6899999999866666554  45679999999999999999999999999999998875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.45  E-value=1.6e-13  Score=79.42  Aligned_cols=63  Identities=19%  Similarity=0.108  Sum_probs=46.9

Q ss_pred             eEEEeCCEEe----ccCCCEEEE---EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQV----RSEGNVEIV---NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l----~~~~~~~~~---~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++    .........   .....+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|
T Consensus       221 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             EEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             EEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            7899999873    333333222   12335689999999999999999999999999999999999877

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.44  E-value=7.8e-13  Score=72.08  Aligned_cols=59  Identities=22%  Similarity=0.389  Sum_probs=51.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+++|.++....++.+.  ...+.|.|.+++..|+|.|+|.|.|..|....++.|.|..
T Consensus       130 v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          130 ISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             EEEEETTEECCCSSSEEEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEECcCCCcEEEe--cCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            6899999999877776553  3445799999999999999999999999999999998863

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.44  E-value=1.7e-13  Score=77.47  Aligned_cols=50  Identities=10%  Similarity=0.036  Sum_probs=43.4

Q ss_pred             CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044          16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus        16 ~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      ++.+....+...|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.
T Consensus        59 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~  108 (203)
T 4fa8_A           59 FFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLT  108 (203)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             eEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCce
Confidence            45555667778999999999999999999999999999999999987653

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.44  E-value=7.4e-13  Score=72.52  Aligned_cols=61  Identities=28%  Similarity=0.367  Sum_probs=53.6

Q ss_pred             eEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++....  ++.+...++.+.|.|.+++..|+|.|+|.|.|..|.....+.|.|..
T Consensus        37 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~   99 (194)
T 2a38_A           37 VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKA   99 (194)
T ss_dssp             EEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEcc
Confidence            68999999987553  66777777888999999999999999999999999988888888874

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.44  E-value=2.6e-12  Score=70.15  Aligned_cols=61  Identities=16%  Similarity=0.296  Sum_probs=51.3

Q ss_pred             eEEEe---CC-EEecc--CCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFC---PR-SQVRS--EGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k---~g-~~l~~--~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|   +| ..+..  ..++.+......+.|.|.+++ ..|+|.|+|.|.|..|...+.+.|.|.+
T Consensus       116 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          116 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             EEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence            68999   44 45542  267888877888899999999 9999999999999999999999999865

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.44  E-value=5.3e-13  Score=73.87  Aligned_cols=62  Identities=23%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             eEEEeCCEEeccCC-CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEG-NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~p~~~   67 (68)
                      +.|+++|.++.... ++...  +  ..|.|.+++.+|+|.|+|.|.|..|.... .+.|.|.++|..+
T Consensus       144 v~W~~~~~~l~~~~~~~~~~--~--~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          144 ISWKKDGSPLDDKDERITIR--G--GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV  207 (212)
T ss_dssp             EEEEETTEEECTTSTTEEEE--T--TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred             EEEEECCccCCCCcceEEcc--C--CeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHh
Confidence            68999999998543 44332  2  37999999999999999999999998765 4899999998754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.44  E-value=9.1e-15  Score=93.25  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=0.0

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN   68 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~~   68 (68)
                      .+.|+|||.+|..+.++.+.  .+.+.|.|.+++.+|+|.|+|.|.|..|.+.+++.|.|.++|+..|
T Consensus       697 ~v~W~k~g~~l~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~  762 (772)
T 3v2a_R          697 QIMWFKDNETLVEDSGIVLK--DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN  762 (772)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             eEEEEECCeECcCCCCeEEc--CCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCccc
Confidence            37899999999866665443  3456899999999999999999999999999999999999998764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.43  E-value=2e-13  Score=76.63  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=46.7

Q ss_pred             eEEEeCCEEeccCCC-EEEEE-------eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVN-------VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~-------~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++|.++..... .....       ....+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.++|.
T Consensus       139 i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             EEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             EEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            689999987542111 00000       11245799999999999999999999999999999999999874

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.43  E-value=4.2e-13  Score=80.22  Aligned_cols=60  Identities=20%  Similarity=0.355  Sum_probs=52.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++..+.++.+..   .+.|.|.+++..|+|.|+|.|.|..|..++.+.|.|.++|
T Consensus       344 v~W~~~g~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          344 VNWMKNGDVVIPSDYFQIVG---GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             EEEEETTEECCCSSSEEEET---TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             EEEEECCEECCCCCcEEEec---CccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            68999999998777766542   2479999999999999999999999999999999998875

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.43  E-value=1.2e-12  Score=70.16  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=50.8

Q ss_pred             CeEEE---------eCCEEeccCCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           1 MFDIF---------CPRSQVRSEGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         1 ~~~W~---------k~g~~l~~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .+.|+         +++..+. ..++.+.. ......|.|.+++.+|+|.|+|.|.|. |.....+.|.|.++|.+
T Consensus        69 ~i~W~~~~~~~i~~~~~~~~~-~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~~~L~V~~~P~~  142 (145)
T 1z9m_A           69 SLQWSNPAQQTLYFGEKRALR-DNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQK  142 (145)
T ss_dssp             CEEEECTTCCEEEETTEECSC-CTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEEEEEEEEECCCC-
T ss_pred             EEEEECCCCcEEEECCceecc-cCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceEEEEEEEEeCCCC
Confidence            36899         5555554 46666433 344678999999999999999999999 99999999999998865

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.41  E-value=8.5e-13  Score=76.57  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|+|+|.++..+.++.+...++.+.|.|.+++.+|+|.|+|.|.|..|... ++.|.|.
T Consensus        33 ~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~   92 (312)
T 2y23_A           33 EFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEE   92 (312)
T ss_dssp             CEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHH
T ss_pred             EEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEe
Confidence            47899999999988899988877888999999999999999999999999554 5555554

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.41  E-value=9e-13  Score=66.81  Aligned_cols=59  Identities=15%  Similarity=0.270  Sum_probs=44.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-C-------CeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-P-------YNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~-------~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V   60 (68)
                      +.|+|+|.++........... .       ..+.|.|.+++..|+|.|+|.|.|..|. .+..+.|.|
T Consensus        44 i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           44 FAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            689999999874321111111 0       1368999999999999999999999998 467788776

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.41  E-value=5.6e-12  Score=70.29  Aligned_cols=62  Identities=18%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             eEEEeCCEEec-cCCCEEEEEe-CCeEEEEEcCCCC-CCCEEEEEEEEcCCcc-eeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVR-SEGNVEIVNV-PYNTKLSIVDILR-KNSGVYRIKAENASGK-DEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~-~~~~~~~~~~-~~~~~l~I~~~~~-~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++. ...++.+... ++.+.|.|.+++. .|+|.|+|.|.|..|. ....+.|.|...
T Consensus        38 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           38 IVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG  103 (212)
T ss_dssp             EEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECT
T ss_pred             EEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecc
Confidence            78999999997 4567776554 4458999999999 9999999999999998 788899999875

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.41  E-value=2e-12  Score=67.79  Aligned_cols=63  Identities=11%  Similarity=0.282  Sum_probs=48.7

Q ss_pred             eEEEeCCEE-ec-------cCCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQ-VR-------SEGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~-l~-------~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|++++.. +.       ...++.+.. ......|.|.+++.+|+|.|.|.|.|. |.....+.|.|..+|.
T Consensus        33 v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           33 LQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             EEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEEECC--
T ss_pred             EEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEEEeCCC
Confidence            679986543 21       345565543 345678999999999999999999999 9999999999998875

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.41  E-value=1.9e-12  Score=71.24  Aligned_cols=65  Identities=8%  Similarity=-0.049  Sum_probs=50.6

Q ss_pred             CeEEEeCCEEeccCC--CEEEEEeCC-------eEEEEEcCCCCCCCEEEEEEEEcCCcceeEE-EEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEG--NVEIVNVPY-------NTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~--~~~~~~~~~-------~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~-~~l~V~~~p~   65 (68)
                      .+.|+|+|.++....  ++.+.....       .+.|.|.+++..|+|.|+|.|.|..|..... +.|.|..+|.
T Consensus        34 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  108 (195)
T 2c5d_C           34 EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPY  108 (195)
T ss_dssp             CCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCE
T ss_pred             EEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCe
Confidence            378999999998652  344443332       5789999999999999999999999876444 8888877764

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.41  E-value=8.6e-13  Score=75.99  Aligned_cols=66  Identities=15%  Similarity=0.155  Sum_probs=48.0

Q ss_pred             eEEEeCCEEeccCCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+++|.++..........  ....+.|.|.+++..|+|.|+|.|.|..|..++++.|.+.+.|.++
T Consensus       219 i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~~~  286 (289)
T 3ejj_X          219 VILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHH  286 (289)
T ss_dssp             EEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC------
T ss_pred             EEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccccc
Confidence            68999999997432221110  0124689999999999999999999999999999999998887764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.40  E-value=3.4e-12  Score=70.25  Aligned_cols=61  Identities=20%  Similarity=0.359  Sum_probs=48.0

Q ss_pred             eEEEeCCEEec----------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVR----------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~----------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~p~   65 (68)
                      +.|+|++..|.          ...++.+.  .+. .|.|.+++.+|+|.|+|.|.|..|..  ...+.|.|.++|.
T Consensus        30 i~W~k~~~~i~~~~~~~~~~~~~~r~~~~--~~g-sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~  102 (176)
T 1hng_A           30 VRWERGSTLVAEFKRKMKPFLKSGAFEIL--ANG-DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS  102 (176)
T ss_dssp             EEEEETTEEEEEEETTSCCEESSTTEEEC--TTS-CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC
T ss_pred             EEEEeCCceeEEEcCCCeecCCCCeEEEC--CCC-cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC
Confidence            78999997653          34566552  222 39999999999999999999999986  7778898887643

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.40  E-value=2.9e-12  Score=70.40  Aligned_cols=63  Identities=14%  Similarity=0.237  Sum_probs=53.0

Q ss_pred             eEEEeCCEEeccC-CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSE-GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~-~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++... .++.+... .+.+.|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|
T Consensus        36 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p  100 (197)
T 2j8h_A           36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA  100 (197)
T ss_dssp             EEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred             EEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCC
Confidence            6899999999753 46666543 446789999999999999999999999999899999887654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=65.09  Aligned_cols=53  Identities=17%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~V~~~   63 (68)
                      +.|+|+|.++....+         ..|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.+.
T Consensus        35 i~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~   88 (91)
T 3bfo_A           35 YQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL   88 (91)
T ss_dssp             EEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC--
T ss_pred             EEEEcCCeeCCcCCC---------CeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEehh
Confidence            689999999875332         3799999999999999999999999754 5678877653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.39  E-value=4.4e-13  Score=74.22  Aligned_cols=63  Identities=13%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~~   66 (68)
                      +.|+++|.++..+.++.+.  ...+.|.|.+++..|+|.|+|.|.|..|.. ...+.|.|..+|.+
T Consensus       141 i~W~~~g~~l~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          141 IQWLFNSQSLQLTERMTLS--QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             EEEEETTEECCCCSSEEEE--TTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             eEEEECCEeCCCCCCeEEc--CCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            7899999999877777654  333579999999999999999999999976 45688888877654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.39  E-value=3.1e-12  Score=70.25  Aligned_cols=58  Identities=14%  Similarity=0.046  Sum_probs=49.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++......     .....|.|.+++..|+|.|+|.|.|. |.....+.|.|..+|.
T Consensus        37 v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~   94 (190)
T 2wv3_A           37 SYWTKNGVELTATRKN-----ASNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPD   94 (190)
T ss_dssp             EEEEETTEECTTCCBC-----CSEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCE
T ss_pred             EEEEECCEECcccceE-----eccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCc
Confidence            6899999999854432     14578999999999999999999999 9889999999988775

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.38  E-value=2.3e-12  Score=76.82  Aligned_cols=56  Identities=25%  Similarity=0.360  Sum_probs=50.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|+|.++....++.+.  .  ..|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus       326 v~W~~~g~~~~~~~~~~~~--~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          326 VRWLRDGQPLASQNRIEVS--G--GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEEEETTEECCCCSSEEEE--T--TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEECCEECCCCceEEEE--C--CEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            6899999999877777653  2  279999999999999999999999999999999986

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.38  E-value=8.6e-13  Score=72.18  Aligned_cols=60  Identities=20%  Similarity=0.373  Sum_probs=48.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      +.|+++|.++....++.+..   ...|.|.+++..|+|.|+|.|.|..|.. ...+.|.|..+|
T Consensus       132 v~W~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          132 VSWIKGDSALRENSRIAVLE---SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EEEEETTEECCCCSSEEECT---TSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEeCCEEccCCCcEEEec---CCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            68999999998777765432   2369999999999999999999999988 456888888766

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.37  E-value=4.3e-12  Score=73.09  Aligned_cols=65  Identities=22%  Similarity=0.331  Sum_probs=56.2

Q ss_pred             eEEEe-CCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCcC
Q psy7044           2 FDIFC-PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k-~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~~   66 (68)
                      +.|+| +|..+....++.+...+..+.|.|.+++..|+|.|+|.|.|..|.. ...+.|.|..+|..
T Consensus        35 v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~  101 (291)
T 2wim_A           35 IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTF  101 (291)
T ss_dssp             EECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBC
T ss_pred             eEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcce
Confidence            68999 7888887788888877778899999999999999999999999976 56788888887754

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=74.58  Aligned_cols=65  Identities=14%  Similarity=0.188  Sum_probs=48.5

Q ss_pred             eEEEeCCEEeccCCCEEEEE-----eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN-----VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~-----~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|++++..+..........     ....+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|.+.|..
T Consensus       213 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG  282 (289)
T ss_dssp             EEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred             eEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence            68998877554322111111     113468999999999999999999999999999999999987753

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.36  E-value=4.4e-12  Score=75.64  Aligned_cols=55  Identities=16%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|+|.++.. .++.+.  ++  .|.|.+++..|+|.|+|.|.|..|...+++.|.|
T Consensus       340 ~v~W~~~g~~~~~-~~~~~~--~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          340 NVVWSHNAKPLSG-GRATVT--DS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             CCEEEETTEECCS-SSEEEE--TT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eeEEEECCEECCC-CceEEE--CC--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            3789999999975 366543  33  8999999999999999999999999999999887

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.36  E-value=5.5e-12  Score=68.62  Aligned_cols=65  Identities=17%  Similarity=0.062  Sum_probs=52.7

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCC--eEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPY--NTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~--~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p~   65 (68)
                      .+.|+|+|.++....+..+.....  .+.|.|.+++..|+|.|+|.|.|..|. ....+.|.|..+|.
T Consensus        33 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  100 (182)
T 1rhf_A           33 DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPF  100 (182)
T ss_dssp             CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCE
T ss_pred             eEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCe
Confidence            378999999998766665554443  468999999999999999999999885 45678888887774

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.35  E-value=4.4e-12  Score=79.17  Aligned_cols=63  Identities=17%  Similarity=0.066  Sum_probs=48.5

Q ss_pred             eEEEeCCEEeccCCC-------EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGN-------VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-------~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~V~~~p   64 (68)
                      +.|+|||.++.....       +.+......+.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.++|
T Consensus       478 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          478 CKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            689999998853321       1222223357899999999999999999999999665 45899999887

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.35  E-value=1.4e-11  Score=67.33  Aligned_cols=64  Identities=14%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             eEEEe-CCEEec-cCCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCC-cceeEEEEEEEEcCCc
Q psy7044           2 FDIFC-PRSQVR-SEGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENAS-GKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k-~g~~l~-~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g~~~~~~~l~V~~~p~   65 (68)
                      +.|++ +|.++. ...++.+.. ......|.|.+++..|+|.|+|.|.|.. +.....+.|.|..+|.
T Consensus        35 v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~  102 (191)
T 1epf_A           35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM  102 (191)
T ss_dssp             EEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSE
T ss_pred             EEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCce
Confidence            68999 999887 446666543 3567899999999999999999999999 4667888888887764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.35  E-value=1.5e-11  Score=68.67  Aligned_cols=62  Identities=18%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCC-CCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDI-LRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~-~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++.......+... ...+.|.|.++ +..|+|.|+|.|.|..|.....+.|.|...
T Consensus        38 v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (212)
T 2yd6_A           38 IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLRE  101 (212)
T ss_dssp             EEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECG
T ss_pred             EEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEecc
Confidence            689999999985433222222 34678999999 599999999999999999999999999764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.34  E-value=7.3e-12  Score=72.64  Aligned_cols=63  Identities=14%  Similarity=0.237  Sum_probs=52.9

Q ss_pred             eEEEeCCEEeccC-CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSE-GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~-~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++... .++.+... ++.+.|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|
T Consensus        36 v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  100 (305)
T 2nzi_A           36 VKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA  100 (305)
T ss_dssp             EEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEE
T ss_pred             EEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCC
Confidence            6899999999753 46666543 456789999999999999999999999998889999887654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.34  E-value=5.3e-12  Score=70.39  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=47.7

Q ss_pred             eEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEE-EEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD-VEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~-~~l~V~~~p   64 (68)
                      +.|+++|.++.. ..++.+.  .+  .|.|.+++..|+|.|+|.|.|..|...+. +.|.|.+.+
T Consensus       142 i~W~~~~~~~~~~~~~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          142 IYWIKNQTKVDMSNPRYSLK--DG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EEEEETTEECCTTSTTEEEE--TT--EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEECCeEcccCCCeEEcc--CC--eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence            689999999975 3455432  22  79999999999999999999999998765 899998754

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.33  E-value=2.8e-12  Score=72.30  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             eEEEe----CCEEeccCCCEEEEE--------eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFC----PRSQVRSEGNVEIVN--------VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k----~g~~l~~~~~~~~~~--------~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|++    +|.++..........        ....+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|..
T Consensus       146 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          146 IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             EEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred             EEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCC
Confidence            68999    888886443321111        113467999999999999999999999999999999999987754

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.33  E-value=9.4e-13  Score=81.52  Aligned_cols=65  Identities=11%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             eEEEeCCEEeccCC-CEEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEG-NVEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-~~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++.... ++.....+    ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|..
T Consensus       346 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i  415 (524)
T 2ec8_A          346 QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI  415 (524)
T ss_dssp             EEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEE
T ss_pred             EEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeE
Confidence            78999999997554 43322222    3568999999999999999999999999999999999887753

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.33  E-value=4.2e-12  Score=73.78  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=53.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++|.++..+.++.+......+.|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus       140 i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  198 (317)
T 2y25_A          140 VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG  198 (317)
T ss_dssp             EEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEee
Confidence            68999999999888888887777888999999999999999999999999888888765

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.33  E-value=5.2e-12  Score=69.88  Aligned_cols=64  Identities=11%  Similarity=0.038  Sum_probs=49.4

Q ss_pred             eEEEe-CCEEeccCCCEEEEEe---CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFC-PRSQVRSEGNVEIVNV---PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k-~g~~l~~~~~~~~~~~---~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+| ++.......++.+...   .+...|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus        39 v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~  106 (202)
T 3bp6_B           39 ASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYM  106 (202)
T ss_dssp             EEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCC
T ss_pred             EEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCC
Confidence            68999 5554444556654332   1557899999999999999999999999889999999987653

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.32  E-value=9.8e-12  Score=69.21  Aligned_cols=58  Identities=19%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             eEEEeCCEEeccC--------CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSE--------GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~--------~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++...        .++.+.  . ...|.|.+++.+|+|.|+|.|.|..|....++.+.+..
T Consensus       141 v~W~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          141 LIWIKDGVPLDDLKAMSFGASSRVRIV--D-GGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             EEEEETTEEECCCCCC---CCCSEEEE--T-TTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEECCcCCCcccccccccCCcEEec--C-CCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            6899999999832        333332  1 23699999999999999999999999988776666654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.32  E-value=2.9e-12  Score=71.54  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++....++. .........|.|.+++..|+|.|+|.|.|..|.....+.|.|...|
T Consensus        51 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~  114 (231)
T 3ojm_B           51 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS  114 (231)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCC
Confidence            68999999997544321 1223344579999999999999999999999999999999998753

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.31  E-value=1.6e-12  Score=81.79  Aligned_cols=61  Identities=13%  Similarity=0.039  Sum_probs=49.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|||.+|....+..    .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|..
T Consensus       358 i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i  418 (527)
T 3qs9_E          358 CTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV  418 (527)
T ss_dssp             EEEEETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEE
T ss_pred             EEEEECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeE
Confidence            78999999997554421    23457999999999999999999999999999999999988854

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.31  E-value=2e-12  Score=75.94  Aligned_cols=66  Identities=21%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             eEEEe----CCEEeccCCC--EEEEEe-------CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFC----PRSQVRSEGN--VEIVNV-------PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k----~g~~l~~~~~--~~~~~~-------~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|    ||.++....+  +.+...       ...+.|.|.+++..|+|.|+|.|.|..|...+++.|.|.+.|.++
T Consensus       254 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEEL  332 (334)
T ss_dssp             EEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC-
T ss_pred             EEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCCc
Confidence            68999    7887764332  111111       122479999999999999999999999999999999999987654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.31  E-value=5.9e-12  Score=73.40  Aligned_cols=61  Identities=18%  Similarity=0.071  Sum_probs=48.3

Q ss_pred             eEEEeCCEEeccCCCEEEE----Ee--------CCeEEEEEcCCCCCC-CEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIV----NV--------PYNTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~----~~--------~~~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|++||.++.........    ..        ...+.|.|.+++..| +|.|+|.|.|..|...+.+.|.|..
T Consensus       241 i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          241 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             eEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            6899999999865432111    11        123589999999999 9999999999999999999998754

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.31  E-value=2.8e-12  Score=64.45  Aligned_cols=55  Identities=13%  Similarity=0.125  Sum_probs=42.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|++...... +. .. ..  ..|.|.+++.+|+|.|.|.|.|..|.....+.|.|.
T Consensus        43 v~W~k~~~~~~~~-~~-~~-~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           43 LVWTRLHNGKLPS-RA-MD-FN--GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EEEEEGGGBCCCT-TE-EE-ET--TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEEeCCCCCCCc-ee-ec-CC--CEEEEeCCChhhCEEEEEEecCCCCccccEEEEEEe
Confidence            6899986544322 22 11 12  279999999999999999999999999999998874

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.31  E-value=4.7e-12  Score=75.60  Aligned_cols=59  Identities=15%  Similarity=0.104  Sum_probs=47.5

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++..... .......  ..|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.+
T Consensus       344 v~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          344 VQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEEEETTEEGGGSCCCTTEEEET--TEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             eEEEECCEecCCCCCCceEEecC--CEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            789999999975431 1122222  3799999999999999999999999999999999976

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.30  E-value=6.5e-12  Score=68.83  Aligned_cols=56  Identities=27%  Similarity=0.328  Sum_probs=46.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+++|.++....+  +  ......|.|.+++..|+|.|+|.|.|..|.....+.|.|.
T Consensus       145 v~W~~~~~~~~~~~~--~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          145 IRWRKVLEPMPSTAE--I--STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEEETTBCCCTTCE--E--ETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEeCCCcCCCcee--e--cCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            689999998874422  2  2234579999999999999999999999999999999885

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.30  E-value=3.5e-12  Score=69.82  Aligned_cols=55  Identities=20%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+++|..+.          .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.|..
T Consensus       129 v~W~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          129 VQCRSPRGKNI----------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             EEEECTTSCEE----------EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred             EEEEeCCCccc----------cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence            68999875541          12247999999999999999999999999999999999998863

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.29  E-value=2.3e-12  Score=71.34  Aligned_cols=52  Identities=12%  Similarity=0.053  Sum_probs=42.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcC-CCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVD-ILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~-~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|||.+|....         ...|.|.+ ++.+|+|.|+|.|.|..|.....+.+.|..
T Consensus        29 i~W~k~g~~l~~~~---------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~   81 (186)
T 1jbj_A           29 LKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGS   81 (186)
T ss_dssp             CEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCS
T ss_pred             eEEEECCEECCCCC---------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEec
Confidence            68999999998531         12699999 999999999999999999877766665544

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.29  E-value=6.8e-12  Score=68.40  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++...        .....|.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|.++|.
T Consensus       118 ~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          118 VIYYKDGEALKYW--------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EEEEETTEECCSC--------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEECCEEEeee--------cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            6899999998532        1235799999999999999999999766 446668999998885

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.29  E-value=1.8e-11  Score=71.23  Aligned_cols=61  Identities=21%  Similarity=0.237  Sum_probs=44.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC-C-eEEEEEcCCCC-CCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP-Y-NTKLSIVDILR-KNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~-~-~~~l~I~~~~~-~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++.. .++.+.... + .+.|.|.+++. .|+|.|+|.|.|..|.....+.|.|...
T Consensus        38 i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (304)
T 2yd9_A           38 VTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLRE  101 (304)
T ss_dssp             EEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECG
T ss_pred             EEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEecc
Confidence            789999999964 555554333 2 47899999998 9999999999999999989999999875

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.28  E-value=3.7e-12  Score=70.33  Aligned_cols=62  Identities=16%  Similarity=0.227  Sum_probs=45.9

Q ss_pred             eEEEeCCE-EeccCCCE-------EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcC
Q psy7044           2 FDIFCPRS-QVRSEGNV-------EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~-~l~~~~~~-------~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~   63 (68)
                      +.|+++|. ++......       ........+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.+.
T Consensus       137 i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~  208 (212)
T 1f97_A          137 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL  208 (212)
T ss_dssp             EEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred             EEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEe
Confidence            68999999 88743321       12223445679999999999999999999999988  66677777653

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.28  E-value=8e-12  Score=64.03  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEEcCC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVLILK   64 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~~~p   64 (68)
                      ...|.|.+++.+|+|.|.|.+.| ..|.....+.|.|..+|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             CcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence            55799999999999999999999 88888999999999876

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.28  E-value=1.3e-11  Score=77.93  Aligned_cols=63  Identities=14%  Similarity=0.275  Sum_probs=52.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++..+.++.+..  +.+.|.|.+++..|+|.|+|.|.|..|.... .+.|.|...|..
T Consensus       498 i~W~~~g~~l~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~  561 (642)
T 1e07_A          498 YLWWVNGQSLPVSPRLQLSN--GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT  561 (642)
T ss_pred             EEEEECCEeCCCCCcEEEcC--CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCc
Confidence            68999999998777776543  3468999999999999999999999997644 688988876653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.28  E-value=8e-12  Score=70.41  Aligned_cols=62  Identities=18%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++....+. ..........|.|.+++..|+|.|+|.|.|..|.....+.|.|...
T Consensus        47 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~  109 (241)
T 3grw_A           47 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  109 (241)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             eEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEecc
Confidence            7899999999754332 1222334557999999999999999999999999999999998764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-12  Score=64.89  Aligned_cols=52  Identities=15%  Similarity=0.173  Sum_probs=40.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.|+|+|.++....         ...|.|.+++..|+|.|+|.|.|..|..  ...+.|.|.+
T Consensus        42 v~W~k~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~~   95 (96)
T 2ens_A           42 IHWMKDGVPLPLPP---------SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE   95 (96)
T ss_dssp             CCCEESSSBCSSCC---------CSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEECC
T ss_pred             EEEEECCEECcCCC---------CCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEeC
Confidence            68999999887432         2479999999999999999999976643  4556666654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.27  E-value=2e-11  Score=71.05  Aligned_cols=58  Identities=24%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++....++    ..+...|.|.++  +|+|.|+|.|.|..|...+.+.|.|.++|.
T Consensus       237 v~W~~~~~~l~~~~~~----~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          237 VKWMQGAEDLTPEDDM----PVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             EEEEETTEECSCSSSC----CBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred             EEEEECCEECCCcccc----cCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence            6899999999865543    234557888876  599999999999999999999999988764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.27  E-value=2.5e-11  Score=72.35  Aligned_cols=49  Identities=16%  Similarity=0.294  Sum_probs=44.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|||.++..+          .+.|.|.+++..|+|.|+|.|.|..|...+++.|.|
T Consensus       339 i~W~~~g~~i~~~----------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          339 VSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCEECccC----------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            7899999998743          237999999999999999999999999999999876

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.27  E-value=6.8e-12  Score=64.79  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=40.1

Q ss_pred             eEEEeCCEEeccCC-----CEEEEEeCCeEEEEE--cCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEG-----NVEIVNVPYNTKLSI--VDILRKNSGVYRIKAENASGKDEA-DVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-----~~~~~~~~~~~~l~I--~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~   62 (68)
                      +.|+|+|.++....     +......+....+.|  .+++..|+|.|+|.|.|..|...+ .+.|.+..
T Consensus        41 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           41 IEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEeeeEEEEhhh
Confidence            68999999997542     222211222222323  367899999999999999998755 46666544

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.27  E-value=1e-11  Score=69.30  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=49.5

Q ss_pred             eEEEe----CCEEeccCCC--EEEEEe-----CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFC----PRSQVRSEGN--VEIVNV-----PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k----~g~~l~~~~~--~~~~~~-----~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|++    +|..+.....  ......     ...+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.+
T Consensus       150 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          150 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             EEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             EEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence            68999    8888764332  111111     12346999999999999999999999999999999999998765

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.27  E-value=3.6e-12  Score=70.55  Aligned_cols=45  Identities=7%  Similarity=0.125  Sum_probs=38.1

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      .+.|+|||.+|.....       ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       135 ~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          135 TIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             eEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            4789999999974332       34579999999999999999999999976

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.27  E-value=3.2e-12  Score=70.54  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=45.1

Q ss_pred             eEEEeC--CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCP--RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~--g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+  +..+......    ......|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.++|
T Consensus       154 v~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~  214 (214)
T 3jz7_A          154 FEWQKLSDSQTMPTPWLA----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS  214 (214)
T ss_dssp             EEEEECSTTCCCCGGGGG----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred             EEEEECCCCCccCcccee----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence            689994  4444422111    1223389999999999999999999999999999999998654

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.26  E-value=6.4e-11  Score=62.84  Aligned_cols=52  Identities=23%  Similarity=0.178  Sum_probs=42.2

Q ss_pred             CCEEEEEe---CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044          15 GNVEIVNV---PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus        15 ~~~~~~~~---~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .|+.+...   .+...|.|.+++.+|+|.|.|.+.|..|...+.+.|.|.+++-.
T Consensus        71 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P~~~  125 (139)
T 1pko_A           71 GRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW  125 (139)
T ss_dssp             TSEEEECTTGGGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTT
T ss_pred             CceEEccccccCCeEEEEEccCCHHHCEEEEEEEEcCCCceEEEEEEEEecCcCc
Confidence            45554432   24678999999999999999999999998899999999976544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.26  E-value=2.9e-11  Score=66.69  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=47.5

Q ss_pred             CCEEecc-----CCCEEEEE---eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           7 PRSQVRS-----EGNVEIVN---VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         7 ~g~~l~~-----~~~~~~~~---~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +|..+..     ..++.+..   ..+...|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|..+
T Consensus        57 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~  125 (214)
T 3jz7_A           57 GDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGT  125 (214)
T ss_dssp             TTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSC
T ss_pred             CCeEccccCCccccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCc
Confidence            6666542     34555432   1245679999999999999999999999999999999999888653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.26  E-value=1.8e-11  Score=73.71  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             eEEEeCCEEeccC----CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSE----GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~----~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|++++..+...    .++.+  .+  ..|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.+.+
T Consensus       277 i~W~~~~~~~~~~~~~~~r~~~--~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~  339 (361)
T 2xot_A          277 KVWVSPSNEQVLSQGSNGSVSV--RN--GDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT  339 (361)
T ss_dssp             EEEECTTSCBCCSCCSSSSEEE--ET--TEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESSC
T ss_pred             EEEEeCCCeeEeecccCCceEe--ec--CeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEeee
Confidence            6899987665422    25665  22  269999999999999999999999999999999997643

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.26  E-value=1.6e-11  Score=65.54  Aligned_cols=66  Identities=21%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             CeEEEeC--CE---Ee-ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc----eeEEEEEEEEcCCcC
Q psy7044           1 MFDIFCP--RS---QV-RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK----DEADVEITVLILKEN   66 (68)
Q Consensus         1 ~~~W~k~--g~---~l-~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~----~~~~~~l~V~~~p~~   66 (68)
                      .+.|+|+  |.   .+ ....|+.+........|.|.+++.+|+|.|.|.|.|..|.    ....+.|.|.+.|.+
T Consensus        46 ~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p~~  121 (133)
T 3khq_A           46 ALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTL  121 (133)
T ss_dssp             CEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-------CCCEEEEEC-----
T ss_pred             EEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCCCcceeECCCEEEEEEecccc
Confidence            3689997  32   22 2457888877677788999999999999999999999872    356678888886643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.26  E-value=8.9e-12  Score=76.76  Aligned_cols=58  Identities=24%  Similarity=0.366  Sum_probs=45.1

Q ss_pred             eEEEeCCEEecc---CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRS---EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~---~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++..   ..++.+  ..+ ..|.|.+++++|+|.|+|.|.|..|.+++.+.|.|.+
T Consensus       417 i~W~~~~~~~~~~~~~~~~~~--~~~-~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  477 (477)
T 2id5_A          417 ILWLSPRKHLVSAKSNGRLTV--FPD-GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS  477 (477)
T ss_dssp             EEEECTTSCBC-------CEE--CTT-SCEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEECCccccccCCCceEEe--CCC-CEEEEeeCChHHCEEEEEEEEeCCCcEEEEEEEEEeC
Confidence            689999988763   223322  222 3699999999999999999999999999999998864

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.25  E-value=9.2e-12  Score=80.36  Aligned_cols=65  Identities=14%  Similarity=0.198  Sum_probs=54.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++....++.+... ...+.|.|.+++..|+|.|+|.|.|..|....++.|.|..+|..
T Consensus       652 i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~  717 (816)
T 3dmk_A          652 IDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW  717 (816)
T ss_dssp             EEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEE
T ss_pred             EEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCce
Confidence            689999999976555554433 45688999999999999999999999999999999999887753

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.25  E-value=3.8e-11  Score=74.98  Aligned_cols=66  Identities=15%  Similarity=0.051  Sum_probs=52.0

Q ss_pred             eEEEeCCEEec--------------cCCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVR--------------SEGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~--------------~~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|++..+.              ...|+.+..  ..+...|.|.+++..|+|.|+|.|.|..|..+..+.|.|..+|.
T Consensus        35 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~  114 (585)
T 2ocw_A           35 KYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPG  114 (585)
T ss_pred             EEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCcc
Confidence            67999986321              124555554  34456899999999999999999999999999999999998886


Q ss_pred             CC
Q psy7044          66 NI   67 (68)
Q Consensus        66 ~~   67 (68)
                      .+
T Consensus       115 ~~  116 (585)
T 2ocw_A          115 LL  116 (585)
T ss_pred             cc
Confidence            53

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.25  E-value=1.2e-11  Score=75.91  Aligned_cols=62  Identities=13%  Similarity=0.300  Sum_probs=44.6

Q ss_pred             eEEEeC-CEEeccC---CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCP-RSQVRSE---GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~-g~~l~~~---~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+++ |..+...   .++.+.  . ...|.|.+++.+|+|.|+|.|.|..|..++++.+.|.+.|.+
T Consensus       372 i~W~~~~~~~~~~~~~~~~~~~~--~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v~~~~~~  437 (440)
T 3zyj_A          372 VSWITPNGTVMTHGAYKVRIAVL--S-DGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH  437 (440)
T ss_dssp             EEEECTTSCEEESSSCCSSEEEC--T-TCCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEEC-----
T ss_pred             eEEEeCCCceeeccCCCceEEEc--c-CCeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEEeccccc
Confidence            689994 4444422   244332  2 235999999999999999999999999999999999987754

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.25  E-value=2.1e-12  Score=71.10  Aligned_cols=59  Identities=5%  Similarity=-0.032  Sum_probs=42.4

Q ss_pred             eEEEeCCEEeccCCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++|.++.......... ....+.|.|.++...|+|.|+|.|.|++|.....+.|.|
T Consensus       150 i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          150 VTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             EEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            78999998876432221100 011357999999999999999999999997766655543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.24  E-value=9.3e-12  Score=69.85  Aligned_cols=56  Identities=18%  Similarity=0.110  Sum_probs=42.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC-cceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS-GKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|||.++..        ......|.|.+++.+|+|.|+|.|.|.. +..+..+.|.|.++|.
T Consensus       121 v~W~k~g~~~~~--------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          121 VTYLQNGKGRKY--------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA  177 (204)
T ss_dssp             EEEEETTEEEEE--------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred             EEEEECCcEeec--------ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence            789999998752        1113479999999999999999999954 4667788999987664

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.24  E-value=7.8e-12  Score=74.66  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++..... ..  ....+.|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       254 v~W~~~~~~~~~~~~-~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  314 (404)
T 3p3y_A          254 IAWYKKGGDLPSDKA-KF--ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY  314 (404)
T ss_dssp             EEEEETTBCCCTTTE-EE--EGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE
T ss_pred             EEEEECCEECCCCcc-cc--cccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCe
Confidence            789999999875433 22  23345799999999999999999999999999999999987764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.24  E-value=7.7e-12  Score=74.61  Aligned_cols=65  Identities=20%  Similarity=0.306  Sum_probs=50.5

Q ss_pred             CeEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~p~   65 (68)
                      .+.|+|+|.++....  ++........+.|.|.+++..|+|.|+|.|.|..|.... .+.|.|..+|.
T Consensus       243 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~  310 (395)
T 1bih_A          243 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK  310 (395)
T ss_dssp             CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEE
T ss_pred             eEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCc
Confidence            378999999997543  333222223347999999999999999999999998765 88999887764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=6.8e-12  Score=77.18  Aligned_cols=63  Identities=14%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             eEEEe-CCEEeccC---CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFC-PRSQVRSE---GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k-~g~~l~~~---~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|++ +|..+...   .++.+.  . ...|.|.+++.+|+|.|+|.|.|..|..++++.|.|.+.|.+.
T Consensus       382 i~W~~~~~~~~~~~~~~~~~~~~--~-~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~  448 (452)
T 3zyi_A          382 VKWLLPNGTVLSHASRHPRISVL--N-DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHH  448 (452)
T ss_dssp             EEEECTTSCEECSSCCCSSCEEC--T-TSCEECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC-------
T ss_pred             EEEEeCCCcEeccCCCCCCEEEC--C-CCeEEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEEEcccccC
Confidence            68999 45555432   244332  2 2359999999999999999999999999999999999887653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.23  E-value=2.3e-11  Score=66.83  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=43.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~V   60 (68)
                      +.|+|+|.++......     .....|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       139 v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          139 LLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            7899999999755432     345689999987  89999999999999886 7899988

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.23  E-value=1.9e-11  Score=66.69  Aligned_cols=54  Identities=19%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++..        ......|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.++
T Consensus       121 ~~W~k~g~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  175 (175)
T 1fnl_A          121 VTYLQNGKDRKY--------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA  175 (175)
T ss_dssp             EEEEETTEEEEE--------EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             EEEEECCeEccC--------CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeCC
Confidence            689999998852        111347999999999999999999998774 566788888763

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.22  E-value=4.4e-11  Score=66.63  Aligned_cols=59  Identities=8%  Similarity=0.223  Sum_probs=46.6

Q ss_pred             eEEEe--CCEEe----------ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee--EEEEEEEEcC
Q psy7044           2 FDIFC--PRSQV----------RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE--ADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k--~g~~l----------~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~--~~~~l~V~~~   63 (68)
                      +.|+|  ++.+|          ....|+.+.  .+ ..|.|.++++.|+|.|+|.|.|..|...  ..+.|.|.++
T Consensus        33 i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--~n-gsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           33 IKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--KN-GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             EEEEEGGGCCEEEEECGGGCEEESCTTEEEC--TT-SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEeCccCCCCCCCeEEEC--CC-CCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCc
Confidence            68999  99887          234666654  22 2799999999999999999999999764  4677888864

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.22  E-value=1.4e-11  Score=74.14  Aligned_cols=61  Identities=20%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             eEEEe-CCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFC-PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k-~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+| +|.++....+  .  ......|.|.+++.+|+|.|+|.|.|..|...+.+.|.|..+|.+
T Consensus       237 i~W~k~~~~~~~~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~  298 (384)
T 3kld_A          237 ILWRRADGKPIARKAR--R--HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNW  298 (384)
T ss_dssp             EEEEETTCCCCCTTCE--E--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred             EEEEeCCCccccccce--e--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCcc
Confidence            68999 4556653222  1  233457999999999999999999999999999999999887753

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.22  E-value=3.8e-11  Score=71.50  Aligned_cols=61  Identities=15%  Similarity=0.177  Sum_probs=49.8

Q ss_pred             eEEEeCCEEecc--------CCCEEEEE----------eCCeEEEEEcCCCCCCCEEEEEEEEcC--CcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRS--------EGNVEIVN----------VPYNTKLSIVDILRKNSGVYRIKAENA--SGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~--------~~~~~~~~----------~~~~~~l~I~~~~~~d~G~Y~c~a~n~--~g~~~~~~~l~V~   61 (68)
                      +.|+|+|.++..        +.++.+..          .++...|.|.+++..|+|.|+|.|.|.  .|.....+.|.|.
T Consensus       213 i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          213 LWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             EEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             EEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            689999998875        45555543          222458999999999999999999999  9999999888886


Q ss_pred             c
Q psy7044          62 I   62 (68)
Q Consensus        62 ~   62 (68)
                      .
T Consensus       293 ~  293 (363)
T 1wio_A          293 R  293 (363)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.22  E-value=8e-11  Score=64.24  Aligned_cols=62  Identities=16%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             eEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++.. ..++.+.  ...+.|.|.+++..|+|.|+|.+.|..|. ....+.|.|..+|.
T Consensus        39 i~W~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~  102 (192)
T 2iep_A           39 ISWTRNKILIKLFDTRYSIR--ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK  102 (192)
T ss_dssp             EEEEETTEECCTTCTTEEEE--GGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEE
T ss_pred             EEEEECCEEccccCccEEEc--CCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCc
Confidence            689999999974 4566554  23347999999999999999999999997 45667777766553

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.21  E-value=3.1e-11  Score=74.74  Aligned_cols=64  Identities=20%  Similarity=0.097  Sum_probs=49.9

Q ss_pred             eEEEeCCEEe--ccCCCEEEE---EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQV--RSEGNVEIV---NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l--~~~~~~~~~---~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++  ....+..+.   .....+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus       244 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  312 (524)
T 2ec8_A          244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF  312 (524)
T ss_dssp             EEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCE
T ss_pred             EEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCc
Confidence            7899999883  322222222   112346899999999999999999999999999999999988764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.21  E-value=2.1e-10  Score=74.11  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-----CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-----PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-----~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+++|.++..+.++.....     ...+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|
T Consensus       461 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  528 (816)
T 3dmk_A          461 ISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP  528 (816)
T ss_dssp             EEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSC
T ss_pred             EEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCC
Confidence            789999999987777655321     224679999999999999999999999999999999998877

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.21  E-value=2e-10  Score=66.10  Aligned_cols=64  Identities=16%  Similarity=0.290  Sum_probs=51.1

Q ss_pred             eEEEe-CCEEecc-CCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCCc
Q psy7044           2 FDIFC-PRSQVRS-EGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k-~g~~l~~-~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p~   65 (68)
                      +.|+| +|.++.. ..++.+.. ....+.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.
T Consensus        35 i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~  102 (291)
T 1qz1_A           35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM  102 (291)
T ss_dssp             EEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSE
T ss_pred             eEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeecccc
Confidence            78999 8888874 35665543 456789999999999999999999999974 46788888887664

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.20  E-value=7.8e-12  Score=73.21  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=46.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEc-CCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIV-DILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~-~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+++|.++...  ..+  ..  ..|.|. +++..|+|.|+|.|.|..|.....+.|.|.+.+..
T Consensus       265 i~W~~~~~~~~~~--~~~--~~--~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  324 (331)
T 3u83_A          265 YHWTTLNGSLPKG--VEA--QN--RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAAL  324 (331)
T ss_dssp             EEEEETTBSCCTT--EEE--ET--TEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred             EEEEECCCccccc--cee--cC--cEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence            7899999988643  222  22  369999 99999999999999999999999999999887653

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.20  E-value=2.9e-11  Score=67.49  Aligned_cols=65  Identities=9%  Similarity=-0.012  Sum_probs=46.6

Q ss_pred             eEEEe-CCEEeccCCCEEEEEe-C-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFC-PRSQVRSEGNVEIVNV-P-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k-~g~~l~~~~~~~~~~~-~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|++ ++..+........... + ..+.|.|.+++..|+|.|+|.|.|..|....++.|.|.++|-.
T Consensus       143 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  210 (222)
T 4i0k_A          143 VFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLT  210 (222)
T ss_dssp             EEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----
T ss_pred             EEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccc
Confidence            68999 5666653222222212 2 2456899999999999999999999999999999999988754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.19  E-value=1.1e-10  Score=68.84  Aligned_cols=59  Identities=14%  Similarity=0.072  Sum_probs=46.7

Q ss_pred             eEEEeCCEEecc-CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC--CcceeEE----EEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA--SGKDEAD----VEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~--~g~~~~~----~~l~V~~~p   64 (68)
                      +.|+|+|.++.. ..++...    ...|.|.+++.+|+|.|+|.|.|.  .|.....    +.|.|.++|
T Consensus       161 i~W~k~~~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          161 ITWYKNNQELIIDGTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EEEEETTEECCCSSSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             EEEEECCccCCCCCceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            789999999963 3454433    257999999999999999999998  7755544    778888776

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.19  E-value=4.7e-11  Score=63.23  Aligned_cols=51  Identities=16%  Similarity=0.294  Sum_probs=38.3

Q ss_pred             eEEEeCCEEeccC----------CCEEEEEe---CCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSE----------GNVEIVNV---PYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~----------~~~~~~~~---~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|+|..+...          .++.+...   ...+.|.|.+++..|+|.|+|.|.|..|..
T Consensus        53 i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           53 IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             EEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECCTTSS
T ss_pred             EEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEecCCcc
Confidence            6899988766421          24443321   134689999999999999999999999975

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.19  E-value=2.3e-12  Score=71.02  Aligned_cols=61  Identities=16%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             eEEEeCCEEeccCCCE-------EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNV-------EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-------~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.|+++|.++....+.       ........+.|.|.+++.+|+|.|+|.|.|..|..  +..+.|.|.|
T Consensus       140 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~d  209 (209)
T 1nbq_A          140 YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE  209 (209)
T ss_dssp             EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEEC
T ss_pred             eEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEeC
Confidence            6899999988754321       11112234679999999999999999999999988  5556666653

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.19  E-value=1.4e-10  Score=64.96  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=47.4

Q ss_pred             eEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+++ +.++.  .+  .........|.|.++++.|+|.|.|.|.|..|..+..+.|.|..+|..+
T Consensus        33 i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~   95 (202)
T 1vca_A           33 FSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP   95 (202)
T ss_dssp             EEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCC
T ss_pred             EEEECCCCCCcc--ce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCC
Confidence            679884 23322  11  2223455679999999999999999999999998889999999887643

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.19  E-value=6.7e-11  Score=60.85  Aligned_cols=39  Identities=18%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      ...|.|.+++.+|+|.|.|.+.|..|.....+.|.|..+
T Consensus        88 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~p  126 (126)
T 1eaj_A           88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK  126 (126)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-
T ss_pred             eEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEcC
Confidence            357999999999999999999999998899999999763

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.19  E-value=1.2e-10  Score=71.51  Aligned_cols=62  Identities=6%  Similarity=0.058  Sum_probs=44.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|++++..+.....+. ........|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus        80 i~W~~~~~~l~~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  141 (423)
T 3qs7_E           80 CLWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL  141 (423)
T ss_dssp             EEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC---
T ss_pred             EEEEECCCccCccceec-cccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCc
Confidence            68999999887433221 112234579999999999999999999999999989999887544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.18  E-value=1.8e-11  Score=67.72  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++.... ...........|.|.++++.|+|.|+|.|.|..|  ..+..+.|.|.+.
T Consensus        35 ~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~   97 (196)
T 3p2t_A           35 YRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGA   97 (196)
T ss_dssp             EEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECS
T ss_pred             EEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCC
Confidence            68999998876311 1111113457899999999999999999999998  3356677877654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.18  E-value=3.9e-11  Score=66.17  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=47.6

Q ss_pred             eEEEeCCEEe------------ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQV------------RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l------------~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|++..+            ....++.+..    ..|.|.+++..|+|.|+|.|.|..|  .....+.|.|..+|..
T Consensus        33 v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~  107 (212)
T 1f97_A           33 VEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK  107 (212)
T ss_dssp             EEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCC
T ss_pred             EEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCC
Confidence            6899987653            2234554432    5799999999999999999999988  5677888999887764

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.18  E-value=1.6e-12  Score=76.76  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=27.8

Q ss_pred             eEEEeCCEEecc-CCCEEEEE-------eC--CeEEEEEcCCCCCCC-EEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRS-EGNVEIVN-------VP--YNTKLSIVDILRKNS-GVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~-~~~~~~~~-------~~--~~~~l~I~~~~~~d~-G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+++|.++.. ..++.+..       .+  ..+.|.|.+++.+|+ |.|+|.|.|..|...+.+.|.|..
T Consensus       262 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          262 VWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             EEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred             EEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            689999999875 23332211       11  134599999999999 999999999999999999999876

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.18  E-value=8.5e-11  Score=70.24  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             eEEEeCCEEeccCC-CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEG-NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++|.++.... ++.+.  . .+.|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       253 ~~W~~~~~~~~~~~~~~~~~--~-~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  314 (403)
T 3laf_A          253 FTWLRGEEVIQLRSKKYSLL--G-GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPW  314 (403)
T ss_dssp             EEEEETTEECCCSSSSEEEE--T-TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             EEEEECCeeccCCCceEEEC--C-ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCc
Confidence            68999999987543 33322  2 24799999999999999999999999999999999987664

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.18  E-value=2.5e-11  Score=69.94  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=45.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|++++..+...........  ...+.|.|.+++..|+|.|+|.|.|..|...+++.|.|.+.+
T Consensus       219 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          219 VFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             EECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             EEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence            568899887764333222111  123589999999999999999999999999999999998764

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.18  E-value=7.1e-11  Score=69.72  Aligned_cols=58  Identities=17%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC-cce---eEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS-GKD---EADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g~~---~~~~~l~V~~~   63 (68)
                      +.|+|||.++....++..  ..  +.|.|.+++.+|+|.|+|.|.|.. |..   ...+.|.|.++
T Consensus       157 v~W~k~~~~l~~~~~~~~--~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~  218 (349)
T 4dep_C          157 ITWYMGCYKIQNFNNVIP--EG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS  218 (349)
T ss_dssp             EEEEETTEECCSCSSEEE--ET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             EEEeeCCEECCCccceee--cC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEcc
Confidence            789999999975444432  22  479999999999999999999998 554   67778888763

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.17  E-value=2.2e-11  Score=68.76  Aligned_cols=54  Identities=7%  Similarity=-0.058  Sum_probs=37.4

Q ss_pred             eEEEeCCEEec----cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           2 FDIFCPRSQVR----SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         2 ~~W~k~g~~l~----~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      +.|++++..+.    ...++.+...+..+.|.|.+++.+|+|.|+|.|.|++|.++..
T Consensus       138 v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          138 VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             EEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             EEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            78988765443    2345555444445678889999999999999999999998764

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.16  E-value=7.4e-11  Score=64.43  Aligned_cols=56  Identities=16%  Similarity=0.114  Sum_probs=42.8

Q ss_pred             eEEEeCCEEeccC--CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSE--GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~--~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++|.++...  .++.+.  .+ ..|.|.+++..|+|.|+|.|.|..|.......+.|
T Consensus       132 v~W~~~~~~~~~~~~~~~~~~--~~-~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          132 IIWKHKGRDVILKKDVRFIVL--SN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEEEETTEEGGGGCCTTEEEC--TT-SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             EEEEECCEEeeccCCceEEEe--cC-CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            6899999999643  344432  22 26999999999999999999999986665555554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.16  E-value=1.9e-10  Score=72.62  Aligned_cols=64  Identities=17%  Similarity=0.296  Sum_probs=52.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCcC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKEN   66 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~~   66 (68)
                      .+.|+|+|.++..+.++.+..  ..+.|.|.+++..|+|.|+|.|.|..|.. ...+.|.|...|..
T Consensus       319 ~v~W~~~g~~l~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~  383 (642)
T 1e07_A          319 TYLWWVNNQSLPVSPRLQLSN--DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDD  383 (642)
T ss_pred             cEEEEECCccCCCcCCEEEeC--CCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCC
Confidence            378999999998777776543  34589999999999999999999999975 45688888877653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.16  E-value=8.7e-11  Score=72.15  Aligned_cols=62  Identities=8%  Similarity=0.035  Sum_probs=46.4

Q ss_pred             CeEEEeCCEEeccCCCEEEE-E-----eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIV-N-----VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~-~-----~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      .+.|+|+|.++......... .     ....+.|.|.++++.|+|.|+|.|.|.   ....+.|.|.++|.
T Consensus       259 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~  326 (423)
T 3qs7_E          259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGF  326 (423)
T ss_dssp             CEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCE
T ss_pred             EEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCc
Confidence            37899999988653322111 1     112347999999999999999999999   77888888887763

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.16  E-value=1.6e-10  Score=63.89  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=37.5

Q ss_pred             eEEEeCCEEeccCCCE-EE-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV-EI-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~   61 (68)
                      +.|+|+|.++...... .. ........|.|.+++.+|+|.|+|.|.|..+..     +..+.|.|.
T Consensus       131 v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          131 FILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence            6899999987532211 11 112235789999999999999999999998722     456666664

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.15  E-value=1.3e-11  Score=72.40  Aligned_cols=62  Identities=18%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++....++ .+........|.|.+++..|+|.|+|.|.|..|.....+.|.|...
T Consensus       155 v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  217 (334)
T 1ry7_B          155 ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  217 (334)
T ss_dssp             EECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecC
Confidence            6899999998755432 1122234558999999999999999999999999999999999874

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.15  E-value=2.8e-10  Score=59.33  Aligned_cols=62  Identities=13%  Similarity=0.098  Sum_probs=45.5

Q ss_pred             eEEEeCCEEecc-------------CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRS-------------EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~-------------~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|++..+..             ..|+.+  .. ...|.|.+++.+|+|.|.|.+. +..|.....+.|.|..+|.+
T Consensus        37 v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~--~~-~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           37 VNWEQQDQLLAICNADLGWHISPSFKDRVAP--GP-GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA  112 (117)
T ss_dssp             EEEEETTEEEEEEETTTEEECCGGGTTTEEE--CS-TTCEEECSCCGGGCEEEEEEEEEETTCCEEEEEEEEEECC---
T ss_pred             EEEEeCCEEEEEEECCCCceeCccccCcEEe--CC-ceEEEEeeCChhhCEEEEEEEEECCCCCeEEEEEEEEEccCcc
Confidence            689998765420             245543  22 3479999999999999999965 57788899999999998864

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.15  E-value=1e-10  Score=65.67  Aligned_cols=53  Identities=19%  Similarity=0.215  Sum_probs=43.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~   63 (68)
                      +.|+++|.++....+         ..|.|.+++..|+|.|+|.|.|..|. .+..+.|.|.+.
T Consensus       150 v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          150 YQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             EEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             EEEEECCEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence            689999999975332         37999999999999999999999997 566788887663

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.15  E-value=1.7e-10  Score=68.07  Aligned_cols=59  Identities=12%  Similarity=0.118  Sum_probs=46.5

Q ss_pred             eEEEeCCEEe-ccCCCEEEE--EeC--CeEEEEEcCCCCCCCE-EEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQV-RSEGNVEIV--NVP--YNTKLSIVDILRKNSG-VYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l-~~~~~~~~~--~~~--~~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.++ ..+.+....  ...  ..+.|.|.+++.+|+| .|+|.|.|..|.....+.|.|
T Consensus       264 v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          264 IDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            5899999985 444443322  112  3568999999999999 999999999999999988876

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.15  E-value=1.9e-10  Score=63.87  Aligned_cols=61  Identities=8%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             eEEEeCCEEec---cC---------------CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVR---SE---------------GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~---~~---------------~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|..+.   .+               +|+.+.   ....|.|.+++.+|+|.|.|.|.|..|.....+.|.|.++
T Consensus        31 v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~  107 (193)
T 2if7_A           31 ITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ  107 (193)
T ss_dssp             EEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred             EEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEcc
Confidence            68999987653   11               233332   2357999999999999999999999998777889999876


Q ss_pred             Cc
Q psy7044          64 KE   65 (68)
Q Consensus        64 p~   65 (68)
                      |.
T Consensus       108 ~~  109 (193)
T 2if7_A          108 LR  109 (193)
T ss_dssp             CE
T ss_pred             CC
Confidence            53

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.15  E-value=7.6e-11  Score=66.58  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCc---ceeEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASG---KDEADVEIT   59 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g---~~~~~~~l~   59 (68)
                      ..|.|.+++.+|+|.|+|.|.|.+|   .....+.|.
T Consensus       213 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             TEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             cEEEEecCCcccCEEEEEEecCCccccCccceeEEEe
Confidence            5799999999999999999999555   445555554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.15  E-value=1.3e-10  Score=62.67  Aligned_cols=51  Identities=20%  Similarity=0.187  Sum_probs=41.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V   60 (68)
                      +.|+|+|.++..        ......|.|.+++..|+|.|+|.|.|..|. .+..+.|.|
T Consensus       118 ~~W~~~g~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          118 VTFFQNGKSQKF--------SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             EEEEETTEEEEE--------ESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEECCeEccc--------cCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            689999998752        223457999999999999999999999996 455666665

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.14  E-value=1.5e-10  Score=60.26  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=33.5

Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcC
Q psy7044          27 KLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLIL   63 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~   63 (68)
                      +|.|.+++++|+|.|+|.+.|..+ ...+++.|.|.++
T Consensus        73 SL~I~nvt~~D~G~Ytc~v~~~~~~~~~~~~~L~V~~~  110 (111)
T 2qsq_A           73 SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYPE  110 (111)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTSCCEEEEEEEEEECC
T ss_pred             cEEEccCcccCCeEEEEEEEeCCCcEEEEEEEEEEecC
Confidence            799999999999999999999987 5788899998864

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.13  E-value=1e-10  Score=65.62  Aligned_cols=51  Identities=22%  Similarity=0.201  Sum_probs=40.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++....          ..|.|.+++.+|+|.|+|.|.|..  .+..+.|.|...|
T Consensus        40 v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~~--~s~~~~l~V~~~p   90 (204)
T 3sgj_C           40 TQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQLST--LSDPVQLEVHIGW   90 (204)
T ss_dssp             EEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETTSB--CCCCEEEEEECSS
T ss_pred             EEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCCCc--ccccEEEEEecCc
Confidence            78999999987432          479999999999999999999854  4445666666554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.13  E-value=7.9e-11  Score=69.29  Aligned_cols=62  Identities=21%  Similarity=0.228  Sum_probs=49.0

Q ss_pred             eEEEeCCEEe--ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQV--RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l--~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++  ....+.++....  ..|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus        57 v~W~k~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~  120 (339)
T 3o4o_C           57 LTWHKNDSARTVPGEEETRMWAQD--GALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD  120 (339)
T ss_dssp             CCCEESSCCSCCSCCSSSCEEEET--TEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCG
T ss_pred             EEEEECCCCcccCccccccEEeeC--CeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCC
Confidence            6799999884  332122333333  2799999999999999999999999999999999998764

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.13  E-value=4.2e-10  Score=62.50  Aligned_cols=48  Identities=15%  Similarity=0.079  Sum_probs=40.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc---ceeEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG---KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g---~~~~~~~l~V~~   62 (68)
                      .++.+........|.|.+++.+|+|.|.|.|.|..|   .....+.|.|..
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  109 (213)
T 3mj8_L           59 DHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLG  109 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred             CcEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeC
Confidence            577777677788999999999999999999999998   446667888873

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.13  E-value=2.1e-10  Score=63.73  Aligned_cols=48  Identities=13%  Similarity=0.090  Sum_probs=40.4

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEE
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVL   61 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~   61 (68)
                      ..++.+........|.|.+++.+|+|.|.|.|.|..|  .....+.|.|.
T Consensus        56 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           56 PDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEEC
T ss_pred             cCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEe
Confidence            3577777777788999999999999999999999998  45666778887

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.13  E-value=2.3e-11  Score=68.45  Aligned_cols=62  Identities=5%  Similarity=-0.127  Sum_probs=39.4

Q ss_pred             eEEEeCC-EEeccCCCEEEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPR-SQVRSEGNVEIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g-~~l~~~~~~~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|++ ..+...........++ .+.+.+.+++.+|+|.|+|.|.|..|..+.++.|.|.++
T Consensus       151 i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          151 IQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             EEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred             EEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence            7899965 4444322222222222 345556667789999999999999999999999988764

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.13  E-value=2e-10  Score=65.72  Aligned_cols=60  Identities=10%  Similarity=0.057  Sum_probs=49.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|++.+.++   .+...  ......|.|.+++.+|.|.|.|.|.|..|..+..+.|.|..+|..
T Consensus        40 i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~   99 (210)
T 1gsm_A           40 VQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQ   99 (210)
T ss_dssp             EEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSE
T ss_pred             eEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCC
Confidence            7899865443   23332  355678999999999999999999999999999999999999864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.13  E-value=1.9e-11  Score=67.25  Aligned_cols=48  Identities=10%  Similarity=0.154  Sum_probs=38.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|.+|..+.+           +.|.+++..|+|.|+|.|.|.+|...+.+.|.+
T Consensus       127 i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          127 LKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             EEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             EEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            789999999875443           234466799999999999999999988877654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.12  E-value=1.6e-10  Score=67.95  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=48.2

Q ss_pred             CeEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc----ceeEEEEEEEEcC
Q psy7044           1 MFDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG----KDEADVEITVLIL   63 (68)
Q Consensus         1 ~~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g----~~~~~~~l~V~~~   63 (68)
                      .+.|+|+|.++... .++.+  ..+...|.|.+++..|+|.|+|.|.|..|    .....+.|.|.+.
T Consensus       156 ~v~W~k~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~  221 (339)
T 3o4o_C          156 KIQWYKDSLLLDKDNEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK  221 (339)
T ss_dssp             CBCCEESSCBCCTTCSSEEE--CTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECC
T ss_pred             eEEEecCCeeCCCCCceeEE--cCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcC
Confidence            36899999999754 45443  33345899999999999999999999998    4566788888754

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.12  E-value=4.2e-10  Score=62.10  Aligned_cols=62  Identities=13%  Similarity=0.073  Sum_probs=46.0

Q ss_pred             eEEEeCCEEec------------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVR------------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~------------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~~~p   64 (68)
                      +.|++++.++.            ...|..+. ..+...|.|.+++.+|+|.|+|.|.|..|..     .+.+.|.|..++
T Consensus        30 ~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  108 (201)
T 1dr9_A           30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF  108 (201)
T ss_dssp             EEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCC
T ss_pred             EEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCC
Confidence            67999998873            01344332 2334579999999999999999999988755     457888887763

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.12  E-value=5.9e-11  Score=65.67  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=44.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~   63 (68)
                      +.|+|+|.++....+ ..........|.|.+++..|+|.|+|.|.|..|..  +..+.|.|.+.
T Consensus        35 ~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~   97 (196)
T 2d3v_A           35 YRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGF   97 (196)
T ss_dssp             EEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECS
T ss_pred             EEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCC
Confidence            689999987753111 00112346789999999999999999999998843  45677888763

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.10  E-value=3.1e-10  Score=61.61  Aligned_cols=50  Identities=10%  Similarity=0.220  Sum_probs=40.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V   60 (68)
                      +.|+++|.++.....       ....|.|.++  +|+|.|+|.|.|..|...+ .+.|.|
T Consensus       131 v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          131 IVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            689999999964221       4568999998  5899999999999998854 777776

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=64.37  Aligned_cols=60  Identities=13%  Similarity=0.096  Sum_probs=42.8

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~   61 (68)
                      +.|+|+|..+...... ..........|.|.+++.+|+|.|+|.|.|..+     ..+..+.|.|.
T Consensus       130 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~  195 (196)
T 3p2t_A          130 FLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS  195 (196)
T ss_dssp             EEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred             EEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence            6899999887543221 222233456899999999999999999999987     23445666653

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.09  E-value=4e-10  Score=61.86  Aligned_cols=61  Identities=13%  Similarity=0.153  Sum_probs=45.4

Q ss_pred             CeEEEeCCEEecc------------CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRS------------EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~------------~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      .+.|+|++..+..            .+|+.+  ......|.|.+++..|+|.|+|.|.|..|  ...+.|.|.++|.
T Consensus        25 ~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~~   97 (171)
T 1ccz_A           25 EVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS   97 (171)
T ss_dssp             CEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCCC
T ss_pred             eEEEEeCCcEEEEEcCCCcccccccCCcEEE--eCCCCeEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcCC
Confidence            4789999876531            123333  22334799999999999999999999988  6778888887643

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.09  E-value=6.9e-10  Score=61.77  Aligned_cols=42  Identities=26%  Similarity=0.362  Sum_probs=36.5

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +...|.|.+++.+|+|.|+|.|.| .|.....+.|.|..+|..
T Consensus        78 ~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~  119 (222)
T 3sbw_C           78 GNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNK  119 (222)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCC
T ss_pred             CEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCC
Confidence            456899999999999999999999 777788899999877654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.09  E-value=2.8e-10  Score=64.99  Aligned_cols=42  Identities=7%  Similarity=0.151  Sum_probs=36.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      ...|.|.+++..|+|.|+|.|.|..|.....+.|.|...|..
T Consensus       200 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~  241 (268)
T 3mj6_A          200 DGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ  241 (268)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---
T ss_pred             eEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCe
Confidence            457999999999999999999999999999999999766544

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.08  E-value=1.8e-10  Score=66.55  Aligned_cols=55  Identities=11%  Similarity=0.000  Sum_probs=43.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++.    .  ....+ +.|.|.+++..|+|.|+|.|.|  |. ...+.|.|.++|.+
T Consensus        40 i~W~~~~~~~~----~--~~~~~-~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~~   94 (290)
T 2o26_X           40 VRWTFKTYFNE----M--VENKK-NEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAKL   94 (290)
T ss_dssp             EEEEEECSSSC----E--EEECS-SEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSCC
T ss_pred             EEEecCCccee----e--ecCCC-ceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCcc
Confidence            68999998771    1  11222 6899999999999999999999  54 77888888887654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.08  E-value=3.3e-11  Score=67.69  Aligned_cols=58  Identities=12%  Similarity=0.102  Sum_probs=42.4

Q ss_pred             CeEEEeCCEEeccCC-CEEEEEeCCeEEEEEcCC-CCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEG-NVEIVNVPYNTKLSIVDI-LRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~-~~~~~~~~~~~~l~I~~~-~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      .+.|+|+|.++.... +..+...  ...|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       142 ~i~W~k~~~~l~~~~~~~~~~~~--~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          142 EILWQHNDKNIGGDEDDKNIGSD--EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             CEEEEETTEEESCCTTCTTEEEE--TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             ceEEEECCEECCCccCCceEecC--CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            378999999987432 1112222  347999999 9999999999999999963 55555554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=68.59  Aligned_cols=54  Identities=9%  Similarity=0.020  Sum_probs=32.5

Q ss_pred             eEEEeCCEEeccCCCEEEE-EeCCe----EEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIV-NVPYN----TKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~-~~~~~----~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      +.|+|||.++.......+. ..++.    +.|.|..+..+|+|.|+|.|.|+.|..-..
T Consensus       254 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~  312 (327)
T 2wng_A          254 LTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSK  312 (327)
T ss_dssp             EEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEE
T ss_pred             EEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchh
Confidence            7899999998643211111 12221    569999999999999999999999976433

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.06  E-value=5.3e-10  Score=62.69  Aligned_cols=54  Identities=13%  Similarity=0.206  Sum_probs=44.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++....         ...|.|.+++..|+|.|+|.|.|..|.. ...+.|.|...|
T Consensus        50 v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~  104 (218)
T 3k0w_A           50 YQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIP  104 (218)
T ss_dssp             EEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCC
T ss_pred             EEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccC
Confidence            68999999987432         3479999999999999999999998865 566788887654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.06  E-value=6.1e-11  Score=65.98  Aligned_cols=61  Identities=11%  Similarity=0.147  Sum_probs=42.8

Q ss_pred             eEEEeCCEEeccCC--CEEEEEeCCe--EEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEG--NVEIVNVPYN--TKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~--~~~~~~~~~~--~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      +.|+|+|.++....  ...+...++.  ..|.|.+++..|+|.|+|.|.|..|.. ...+.|.|..
T Consensus        41 v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~  106 (217)
T 2vr9_A           41 IEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV  106 (217)
T ss_dssp             EEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECE
T ss_pred             EEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEEEE
Confidence            68999999997532  2222222222  234789999999999999999999976 3355666654

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.06  E-value=2.7e-10  Score=58.68  Aligned_cols=54  Identities=22%  Similarity=0.288  Sum_probs=40.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc---ceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG---KDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g---~~~~~~~l~V~~~   63 (68)
                      +.|+|||..+..        ......|.|.++++.|+|.|.|.+.|..+   ..+..+.|.|.+.
T Consensus        44 ~~w~k~g~~l~~--------~~~~~~l~i~~v~~~dsG~Y~C~~~~~~~~~~~~S~~l~L~V~g~  100 (108)
T 4hwn_A           44 FSFYKDGRIVQS--------RGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEIRVQGA  100 (108)
T ss_dssp             EEEEETTEEEEE--------EESCCEEEESSCCGGGCEEEEEEEECTTSSSEEECCCEEECCBC-
T ss_pred             EEEEECCcCccC--------CCcccEEEeCccCcccCeEEEEEEEeCCCceeccCCCEEEEEEec
Confidence            789999998752        12235799999999999999999999876   3344566666654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.05  E-value=9.9e-11  Score=69.72  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=47.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|++..+..  +.    ......|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       239 i~W~~~~~~~~~--~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  296 (382)
T 1cs6_A          239 IKWRKLDGSQTS--KW----LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD  296 (382)
T ss_dssp             EEEEECCSCCSC--CC----SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             EEEEECCccccc--EE----ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCC
Confidence            689998877653  11    22345799999999999999999999999999999999987765

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.05  E-value=1.3e-09  Score=60.58  Aligned_cols=49  Identities=16%  Similarity=0.107  Sum_probs=39.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLIL   63 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~~   63 (68)
                      .|+.+....+...|.|.+++.+|+|.|.|.|.|..|     .....+.|.|...
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  117 (218)
T 3s96_B           64 DRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQ  117 (218)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC
T ss_pred             cceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecC
Confidence            477776666778899999999999999999999987     3455677888753

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.05  E-value=3e-09  Score=54.58  Aligned_cols=50  Identities=12%  Similarity=0.182  Sum_probs=40.2

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +|+.+...  .+...|.|.+++.+|+|.|.|.+.+........+.|.|...|
T Consensus        61 ~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           61 NRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             CCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            46666532  345789999999999999999999986667888999998766

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.04  E-value=1.6e-09  Score=63.05  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=43.0

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE-cCCcce---eEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE-NASGKD---EADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~---~~~~~l~V~   61 (68)
                      .+.|+|+|.++..... .+....  ..|.|.+++..|+|.|+|.|. |..|..   ...+.|.+.
T Consensus       140 ~i~W~k~~~~l~~~~~-~~~~~~--~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~  201 (315)
T 1itb_B          140 KLQWYKDCKPLLLDNI-HFSGVK--DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL  201 (315)
T ss_dssp             CCEEEETTEECCCCSS-SEEEET--TEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EEEEEECCEECCCccc-eEeecC--ceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEe
Confidence            3789999999974322 122222  279999999999999999999 899977   445555555

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.04  E-value=1.5e-10  Score=66.74  Aligned_cols=59  Identities=10%  Similarity=0.057  Sum_probs=39.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~   62 (68)
                      +.|+|+|.++.  .+......+. .+.|.|.+++..|+|.|+|.|.|..|.   ....+.|.|.+
T Consensus        28 v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~   90 (289)
T 3mjg_X           28 VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPD   90 (289)
T ss_dssp             CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCC
T ss_pred             EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEEC
Confidence            68999999884  2222211111 478999999999999999999999986   34555555543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.03  E-value=1.6e-10  Score=65.50  Aligned_cols=60  Identities=12%  Similarity=0.059  Sum_probs=41.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeE--EEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNT--KLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~--~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.|+|+|.++....+. ........  .|.|.+++++|+|.|+|.|.|..|..  +..+.|.|.+
T Consensus        39 ~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~  102 (218)
T 1uct_A           39 TQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTG  102 (218)
T ss_dssp             EEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             EEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcC
Confidence            6899998766422221 11111233  79999999999999999999988733  4457777765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.02  E-value=4.3e-10  Score=66.05  Aligned_cols=66  Identities=20%  Similarity=0.186  Sum_probs=45.1

Q ss_pred             CeEEEeCCEEec---------cCCCEEEEEe-----CCeEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEE
Q psy7044           1 MFDIFCPRSQVR---------SEGNVEIVNV-----PYNTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~---------~~~~~~~~~~-----~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~   61 (68)
                      .+.|+|+|.++.         ...++.+...     .....|.|.+++.+|+|.|+|.|.|..|..     ...+.|.|.
T Consensus        35 ~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~  114 (327)
T 2wng_A           35 PIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVR  114 (327)
T ss_dssp             CEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEE
T ss_pred             eEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEE
Confidence            378999985421         0124433211     335579999999999999999999997752     234688887


Q ss_pred             cCCcC
Q psy7044          62 ILKEN   66 (68)
Q Consensus        62 ~~p~~   66 (68)
                      .+|.+
T Consensus       115 ~~p~~  119 (327)
T 2wng_A          115 AKPSA  119 (327)
T ss_dssp             BCCCC
T ss_pred             ecCCC
Confidence            76653

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.02  E-value=5.1e-10  Score=57.47  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcCCc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLILKE   65 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~p~   65 (68)
                      +...|.|.+++.+|+|.|.|.+.|..+..  ...+.|.|...+.
T Consensus        71 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~l~V~p~~~  114 (116)
T 2or8_A           71 GDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV  114 (116)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEECCSSTTCCEEEEEEEEEECSCC
T ss_pred             CeEEEEECCCCcccCEEEEEEEEcCCcccccEEEEEEEECCccC
Confidence            34579999999999999999999987654  6667777765443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.02  E-value=1.6e-10  Score=64.60  Aligned_cols=40  Identities=18%  Similarity=0.256  Sum_probs=36.1

Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCC-cceeEEEEEEEEcCCcC
Q psy7044          27 KLSIVDILRKNSGVYRIKAENAS-GKDEADVEITVLILKEN   66 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a~n~~-g~~~~~~~l~V~~~p~~   66 (68)
                      .|.|.+++.+|+|.|+|.|.|.. |.....+.|.|..+|..
T Consensus        78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~  118 (231)
T 2pet_A           78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEA  118 (231)
T ss_dssp             CEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCC
T ss_pred             eEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCC
Confidence            39999999999999999999998 88889999999987653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.02  E-value=2.1e-11  Score=67.54  Aligned_cols=61  Identities=13%  Similarity=0.229  Sum_probs=43.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC-c--ceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS-G--KDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g--~~~~~~~l~V~~~   63 (68)
                      +.|+|+|.++....+.. ........|.|.++++.|+|.|+|.|.|.. |  ..+..+.|.|.+.
T Consensus        35 ~~W~k~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~   98 (198)
T 1ugn_A           35 YRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGA   98 (198)
T ss_dssp             EEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECS
T ss_pred             EEEEECCcccccccccc-ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEccc
Confidence            68999998874211100 001233579999999999999999999998 6  3456788888773

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.02  E-value=8.6e-10  Score=65.69  Aligned_cols=60  Identities=23%  Similarity=0.256  Sum_probs=46.5

Q ss_pred             eEEEeCCE------EeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRS------QVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~------~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|++.      .+....++..  .  .+.|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       244 v~W~~~~~~~~~~~~~~~~~~~~~--~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  309 (388)
T 2v5m_A          244 FRWYKFIEGTTRKQAVVLNDRVKQ--V--SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLS  309 (388)
T ss_dssp             EEEEEECTTSSCEEECCCSSSEEE--E--TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE
T ss_pred             EEEEecCCCCcccccccccCceec--c--cCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCc
Confidence            68999753      2333344432  1  23799999999999999999999999999999999987654

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.02  E-value=1.7e-10  Score=67.97  Aligned_cols=65  Identities=6%  Similarity=-0.153  Sum_probs=47.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .+.|++||..|.. ++......+. .+.|.|.++++.|+|.|+|.|.|..+...+.+.|.|..+|+.
T Consensus        36 ~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~~~l~v~~~P~~  101 (313)
T 2d9q_B           36 QILWRLGAELQPG-GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAI  101 (313)
T ss_dssp             CCEEESSSCBCTT-CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEEEEEEEEEECCCCCC
T ss_pred             ceEEEeCCEECCc-cceEEEecCeEEEEEEEeccCCCccceEEeeecCCCceeEEEEEEccCCCCCC
Confidence            3689999998863 3322111112 278999999999999999998776666567788888777754

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.01  E-value=9.7e-10  Score=62.05  Aligned_cols=50  Identities=8%  Similarity=-0.054  Sum_probs=40.3

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLIL   63 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~   63 (68)
                      ..|+.+....+...|.|.+++..|+|.|.|.|.|..+. ....+.|.|...
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             CccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecC
Confidence            35777776667778999999999999999999999775 445567777764

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.01  E-value=1.3e-10  Score=63.96  Aligned_cols=61  Identities=20%  Similarity=0.378  Sum_probs=45.7

Q ss_pred             eEEEeCCEEe------------ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQV------------RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l------------~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|++..+            ....++.+.  .  ..|.|.+++..|+|.|+|.|.|..|  .....+.|.|..+|..
T Consensus        36 v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~  110 (209)
T 1nbq_A           36 VEWKFDQGDTTRLVCYNNKITASYEDRVTFL--P--TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK  110 (209)
T ss_dssp             EEEEEEETTEEEESEETTEECTTTTTTCEEE--T--TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCC
T ss_pred             EEEEEcCCceeEEEEecCccCccccCceEee--c--cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcC
Confidence            6899987652            112344432  2  5799999999999999999999976  4466788888887764

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.01  E-value=2.7e-10  Score=62.58  Aligned_cols=51  Identities=20%  Similarity=0.117  Sum_probs=39.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~~   62 (68)
                      +.|+|+|...          ......|.|.++++.|+|.|+|.|.|..|.  .+..+.|.|.+
T Consensus        38 ~~W~k~g~~~----------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           38 YRLEKLSSSR----------YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             EEEEETTTCC----------EESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred             EEEEECCccc----------cCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecC
Confidence            6799998651          112347999999999999999999999874  24567777755

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.01  E-value=1.9e-09  Score=67.89  Aligned_cols=59  Identities=7%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|++++..+.....+... .....+|.|.+++..|+|.|+|.|.|..|.....+.|.|.
T Consensus        80 ~~W~~~~~~l~~~~~~~~~-~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~  138 (527)
T 3qs9_E           80 CLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR  138 (527)
T ss_dssp             EEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC
T ss_pred             EEEEecCCccCcccccCCC-cceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEEC
Confidence            5799999988755555322 2345679999999999999999999999988887777765

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.01  E-value=4.5e-10  Score=62.86  Aligned_cols=65  Identities=15%  Similarity=0.154  Sum_probs=45.3

Q ss_pred             eEEEeCCEEeccCCCEE-E--E-EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-------eeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVE-I--V-NVPYNTKLSIVDILRKNSGVYRIKAENASGK-------DEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~--~-~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-------~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.+|....... .  . .......|.|.....+|.|.|+|.|.|..|.       .+.+..|.|..+|..
T Consensus       126 i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~~  201 (202)
T 1vca_A          126 IDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN  201 (202)
T ss_dssp             EEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC--
T ss_pred             EEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCCC
Confidence            68999999886321000 0  0 0111345789988889999999999999886       467889999998864

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.01  E-value=2.3e-09  Score=59.50  Aligned_cols=48  Identities=13%  Similarity=0.091  Sum_probs=37.5

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEE
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL   61 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~   61 (68)
                      ..++.+....+...|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|.
T Consensus        61 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~  109 (212)
T 1q0x_L           61 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVL  109 (212)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             cccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEe
Confidence            357777666677899999999999999999999988743 334566664

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.01  E-value=1.2e-09  Score=61.97  Aligned_cols=54  Identities=17%  Similarity=0.205  Sum_probs=45.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+++|.++...        ...+.|.|.+++..|+|.|+|.|.|..+.....+.|.|.+.
T Consensus       115 v~W~~~g~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~  168 (262)
T 3rjd_A          115 VLYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL  168 (262)
T ss_dssp             EEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS
T ss_pred             EEEEECCcccccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC
Confidence            6899999988521        11246999999999999999999999998888899999874

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.01  E-value=2.9e-10  Score=62.68  Aligned_cols=56  Identities=11%  Similarity=0.089  Sum_probs=41.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc---ceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG---KDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g---~~~~~~~l~V~   61 (68)
                      +.|+|+|..+..    ..........|.|.+++.+|+|.|+|.|.|...   ..+..+.|.|.
T Consensus       129 ~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          129 FLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             EEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             EEEEECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            689999977653    222345567899999999999999999998752   33455667664

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.00  E-value=8.1e-09  Score=57.94  Aligned_cols=41  Identities=24%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +...|.|.+++.+|+|.|+|.|.|..|...+.+.+.+..++
T Consensus        81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~  121 (226)
T 4f80_A           81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALG  121 (226)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             CeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccce
Confidence            46789999999999999999999999998888877766544

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.99  E-value=5.7e-10  Score=61.47  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=42.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.|+|+|.++..... ..........|.|.++++.|+|.|+|.+.|..|..  +..+.|.|.+
T Consensus        34 ~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           34 YQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             EEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEES
T ss_pred             EEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecc
Confidence            679999998752100 00112345689999999999999999999987633  4567777765

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.99  E-value=6.4e-10  Score=68.84  Aligned_cols=62  Identities=6%  Similarity=0.013  Sum_probs=44.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++.......+...++    .+.|.|.+++..| |.|+|.|.|..|.....+.|.|...|
T Consensus       253 v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P  318 (523)
T 2rcj_C          253 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLP  318 (523)
T ss_pred             EEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCc
Confidence            78999998864211111111112    3589999999999 99999999999988777777654433

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.99  E-value=8.3e-10  Score=59.93  Aligned_cols=60  Identities=17%  Similarity=0.364  Sum_probs=39.5

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee--EEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE--ADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~--~~~~l~V~~~p   64 (68)
                      +.|++++..+..  ..++.+.  . ...|.|.+++..|+|.|+|.+.|..+...  ..+.|.|..+|
T Consensus        34 v~W~~~~~~~~~~~~~~~~~~--~-~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p   97 (189)
T 2v5t_A           34 VSWLYHNEEVTTISDNRFAML--A-NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP   97 (189)
T ss_dssp             EEEEC-----CBCCCTTEEEC--T-TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred             EEEEECCccceeccCCeEEEe--c-CCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCC
Confidence            689999998863  3454432  2 23699999999999999999999986543  45566665554

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.99  E-value=4.7e-10  Score=63.53  Aligned_cols=59  Identities=14%  Similarity=0.027  Sum_probs=42.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|..+..  ..  ........|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|.+++
T Consensus       137 ~~W~k~g~~~~~--~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          137 FSLAKEGELSLP--QH--QSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             EEEEETTCSSCC--SE--EECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred             EEEEECCCcccc--cc--cCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence            689999988763  21  2234467899999999999999999998642     33556788887754

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.98  E-value=4e-09  Score=58.77  Aligned_cols=48  Identities=8%  Similarity=-0.006  Sum_probs=37.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~   62 (68)
                      .++.+....+...|.|.+++.+|+|.|.|.|.|..+  .....+.|.|..
T Consensus        61 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  110 (216)
T 2xzc_L           61 DRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKR  110 (216)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECC
T ss_pred             CceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcC
Confidence            577776666778999999999999999999999987  223345666653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.98  E-value=2.2e-09  Score=61.76  Aligned_cols=64  Identities=9%  Similarity=0.076  Sum_probs=45.2

Q ss_pred             eEEEe--CCEEec------------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCCc
Q psy7044           2 FDIFC--PRSQVR------------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k--~g~~l~------------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p~   65 (68)
                      +.|+|  +|..+.            ...++.+........|.|.+++.+|+|.|.|.|.|.... -.....|.|.+++.
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~~  236 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAAA  236 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC---
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCCC
Confidence            68999  665431            135777665666788999999999999999999996543 24456777776554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.98  E-value=2.7e-09  Score=59.21  Aligned_cols=48  Identities=13%  Similarity=0.100  Sum_probs=38.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .++.+........|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             ccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEec
Confidence            57777766677899999999999999999999998854 3345677765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.98  E-value=2.2e-09  Score=68.61  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=45.1

Q ss_pred             eEEEeCCEEeccCCCEEEE--------EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIV--------NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~--------~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++|..+.........        .....+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus       258 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~  329 (772)
T 3v2a_R          258 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF  329 (772)
T ss_dssp             EEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC
T ss_pred             EEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCe
Confidence            6899999987643333211        112346799999999999999999999999999999999998774

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.98  E-value=7.7e-10  Score=61.57  Aligned_cols=64  Identities=6%  Similarity=-0.003  Sum_probs=41.2

Q ss_pred             eEEEeC-CEEeccCCCEEEE--EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCP-RSQVRSEGNVEIV--NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~-g~~l~~~~~~~~~--~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++ |..+.........  .......+.+..+...|+|.|+|.|.|..|.....+.|.|.+.|.
T Consensus       148 i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          148 VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             EEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             EEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            689999 7766532222111  111122222223457899999999999999999999999887663

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.97  E-value=5.6e-10  Score=64.16  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=42.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|++++....     ........+.|.|.+++..|+|.|+|.|.|..|.....+.|.|.++|.+
T Consensus        32 v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~   91 (289)
T 3ejj_X           32 VEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS   91 (289)
T ss_dssp             CEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCS
T ss_pred             EEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcc
Confidence            68998764321     2222344578999999999999999999999999999999999887753

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.97  E-value=3.6e-10  Score=72.83  Aligned_cols=66  Identities=12%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             eE-EE--eCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCCcCC
Q psy7044           2 FD-IF--CPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~-W~--k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p~~~   67 (68)
                      +. |+  +||.++.......+......+.|.|.++++.|+|.|+|.|.|..|. ....+.|.|..+|.++
T Consensus       196 i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~  265 (731)
T 2v5y_A          196 DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPI  265 (731)
T ss_dssp             CEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBS
T ss_pred             eeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCC
Confidence            45 88  7888776322111211122468999999999999999999999997 7888899999888653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.97  E-value=6.5e-10  Score=62.73  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVLIL   63 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~~~   63 (68)
                      ...|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|.++
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence            3579999999999999999999988854     55888888875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.97  E-value=8.8e-10  Score=59.96  Aligned_cols=49  Identities=24%  Similarity=0.262  Sum_probs=38.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|.++..          ....|.|.+++..|+|.|+|.|.|..+..  .+.|.|..
T Consensus        40 ~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~--~~~l~V~~   88 (175)
T 1fnl_A           40 TQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTNLSTLSD--PVQLEVHI   88 (175)
T ss_dssp             CEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECSSSCCCC--CEEEEEEC
T ss_pred             eEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEeeCCcccc--cEEEEEeC
Confidence            679999998863          23479999999999999999999976644  45555554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.97  E-value=1e-09  Score=62.14  Aligned_cols=52  Identities=23%  Similarity=0.459  Sum_probs=40.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce---eEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD---EADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~---~~~~~l~V~   61 (68)
                      +.|+++|..+..        ....+.|.|.+++.+|+|.|+|.|.|..|..   ...+.|.|.
T Consensus       207 ~~w~~~~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~  261 (262)
T 3rjd_A          207 FSFYMGSKTLRG--------RNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL  261 (262)
T ss_dssp             EEEEETTEEEEE--------EESCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred             EEEEeCCcEecc--------cCCCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence            579999998762        1234579999999999999999999999965   334555543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.96  E-value=8.3e-10  Score=63.37  Aligned_cols=64  Identities=8%  Similarity=0.004  Sum_probs=46.1

Q ss_pred             CeEEEe--CCEEec------------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           1 MFDIFC--PRSQVR------------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         1 ~~~W~k--~g~~l~------------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      .+.|+|  +|..+.            ...++.+........|.|.+++.+|+|.|.|.|.|........+.|.|.+.+
T Consensus       170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~  247 (257)
T 1f3r_B          170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELKAAE  247 (257)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCSSSC
T ss_pred             cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEeCCC
Confidence            378999  665431            1356766655667789999999999999999999986333445677776543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.96  E-value=9.5e-10  Score=63.36  Aligned_cols=59  Identities=10%  Similarity=0.035  Sum_probs=44.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC---cceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS---GKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~---g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|..+..    ..........|.|.+++..|+|.|+|.|.|..   ...+..+.|.|.+.+
T Consensus       132 ~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          132 FLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             EEEEECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             EEEEECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence            689999976653    22334556789999999999999999999975   244567888888754

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.95  E-value=1.7e-10  Score=63.78  Aligned_cols=49  Identities=6%  Similarity=-0.081  Sum_probs=32.9

Q ss_pred             eEEEeCCEEeccCCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +.|+|+|.++..........  ......|.|.+++.+|+|.|+|.|.|..+
T Consensus       130 ~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          130 FILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             EEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            68999999875321110011  11246899999999999999999999876

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.95  E-value=3.8e-10  Score=62.23  Aligned_cols=57  Identities=9%  Similarity=0.039  Sum_probs=37.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY---NTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|++++..+...........+.   .+.|.|.++..+|+|.|+|.|.|++|.....+.+
T Consensus       154 ~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v  213 (225)
T 4fmk_A          154 ITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPV  213 (225)
T ss_dssp             EEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEE
Confidence            57888876554211111111111   3579999999999999999999999976554443

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.95  E-value=2.6e-09  Score=54.01  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      ...|.|.+++.+|+|.|.|.+.|..+.....+.|.|.
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           71 DVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             BCCEEECSCCGGGCEEEEEEECCSSTTCCEEEEEEEE
T ss_pred             cEeEEEccCCChhCeEEEEEEEcCCcccceEEEEEEE
Confidence            4579999999999999999999998877777777765

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.95  E-value=8e-10  Score=61.72  Aligned_cols=59  Identities=8%  Similarity=0.102  Sum_probs=41.2

Q ss_pred             eEEEeCCEEeccCC----CEEEEEeC----C-----eEEEEEcCCCCCCCEEEEEEEEc-----CCcc-eeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEG----NVEIVNVP----Y-----NTKLSIVDILRKNSGVYRIKAEN-----ASGK-DEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~----~~~~~~~~----~-----~~~l~I~~~~~~d~G~Y~c~a~n-----~~g~-~~~~~~l~V   60 (68)
                      +.|+|+|.++....    ++.+....    .     .+.|.|.....+|+|.|+|.|.|     ..|. .+..+.|.|
T Consensus       152 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          152 ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             EEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             EEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            68999999998654    55544321    1     16688986666679999999999     5555 555555554

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.94  E-value=2.1e-09  Score=63.80  Aligned_cols=48  Identities=10%  Similarity=0.079  Sum_probs=38.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..+.....+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~  115 (344)
T 1za6_B           66 GKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSS  115 (344)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECS
T ss_pred             CcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEec
Confidence            57776554  3467899999999999999999999776666667788773

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.94  E-value=2.5e-09  Score=58.91  Aligned_cols=56  Identities=4%  Similarity=-0.057  Sum_probs=38.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-C-C-eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-P-Y-NTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~-~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|||.++..... ..... + + .....+..+..+|.|.|+|.|.|..|...+.+.+
T Consensus       139 i~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          139 LSWLENGEELNAINT-TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EEEEESSCEECCSEE-EEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             EEEEECCEECccccc-eEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            789999999984322 22222 2 2 2222334455789999999999999998877664

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.94  E-value=7.5e-09  Score=58.02  Aligned_cols=49  Identities=6%  Similarity=0.058  Sum_probs=38.4

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      ..++.+........|.|.+++.+|+|.|.|.+.|..+.. ...+.|.|..
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L           82 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEec
Confidence            467777766678899999999999999999999988732 3445666644

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.94  E-value=5.9e-09  Score=57.54  Aligned_cols=48  Identities=17%  Similarity=0.335  Sum_probs=37.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      .|+.+  ......|.|.+++.+|+|.|+|.+.+.. .....+.|.|.+++.
T Consensus        60 ~R~~l--~~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~  107 (180)
T 2dru_A           60 DRVDL--DKTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVS  107 (180)
T ss_dssp             TTEEE--CTTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCC
T ss_pred             CeEEE--eCCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCC
Confidence            45544  2234569999999999999999999887 677888999987643

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.93  E-value=1.8e-09  Score=65.65  Aligned_cols=49  Identities=18%  Similarity=0.277  Sum_probs=39.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|..+.....          .+   +++..|+|.|+|.|.|..|.....+.|.|.++
T Consensus       402 i~W~~~g~~~~~~g~----------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  450 (450)
T 1z7z_I          402 LKCLKDGTFPLPIGE----------SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  450 (450)
T ss_dssp             EEEEETTTEECCTTS----------CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEECCcccCCCCC----------eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence            689999985543221          12   57889999999999999999999999999763

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.93  E-value=1.1e-09  Score=61.48  Aligned_cols=47  Identities=15%  Similarity=0.092  Sum_probs=36.9

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~   61 (68)
                      .++.+....+...|.|.+++.+|+|.|.|.|.|..+.   ....+.|.|.
T Consensus        80 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  129 (234)
T 2j6e_L           80 DRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVL  129 (234)
T ss_dssp             TTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBC
T ss_pred             ccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEe
Confidence            5777766666789999999999999999999999882   2334566663

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.93  E-value=5.6e-09  Score=59.42  Aligned_cols=48  Identities=10%  Similarity=0.062  Sum_probs=37.4

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .++.+....+...|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|..
T Consensus       102 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~  150 (254)
T 2c1o_A          102 DRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR  150 (254)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC
T ss_pred             ceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC
Confidence            67777766677899999999999999999999997643 2234566654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.92  E-value=1.2e-09  Score=59.63  Aligned_cols=51  Identities=14%  Similarity=0.073  Sum_probs=38.7

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|+|+|.++..  ..+..  .......|.|.+++.+|+|.|+|.|.|..+....
T Consensus        42 v~W~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~   94 (201)
T 3s97_C           42 YRWLLNEFPVFITMDKRRF--VSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV   94 (201)
T ss_dssp             EEEEESSTTCBCCCSSSEE--ECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             EEEEECCceeeeeeCCCeE--EEcCCCeEEECcCCcccCeEEEEEEEecCCCcch
Confidence            689999988752  23322  2333457999999999999999999998876654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.92  E-value=5.1e-09  Score=58.05  Aligned_cols=47  Identities=6%  Similarity=0.043  Sum_probs=37.7

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEE
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITV   60 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V   60 (68)
                      ..++.+....+...|.|.+++.+|+|.|.|.|.|..+. ....+.|.|
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           59 PSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             CCcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEE
Confidence            45777776667789999999999999999999998763 344566776

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.92  E-value=3.2e-09  Score=60.62  Aligned_cols=50  Identities=8%  Similarity=0.009  Sum_probs=39.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      .++.+........|.|.+++.+|+|.|.|.|.|..+.. .....|.|.+.|
T Consensus       196 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~  246 (253)
T 3uzq_A          196 ARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPL  246 (253)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-
T ss_pred             CceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCC
Confidence            56766666677889999999999999999999987644 556778887654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.92  E-value=5.8e-09  Score=59.80  Aligned_cols=50  Identities=14%  Similarity=0.088  Sum_probs=37.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc-------c--eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG-------K--DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-------~--~~~~~~l~V~~~p   64 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..|       .  ....+.|.|...|
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~  125 (257)
T 1f3r_B           65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGG  125 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSC
T ss_pred             CcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCC
Confidence            57776653  4567899999999999999999999965       1  1234577777653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=6.2e-09  Score=56.56  Aligned_cols=55  Identities=7%  Similarity=-0.052  Sum_probs=40.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|+|.++......     .....|.|.  +..|+|.|+|.|.|.   ....+.|.|..+|..
T Consensus        32 ~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~V~~~P~~   86 (184)
T 3b5h_A           32 HRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQLHGPPRV   86 (184)
T ss_dssp             EEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEEECCSCCC
T ss_pred             EEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECC---cCcEEEEEEecCCce
Confidence            6899999999754432     234567777  689999999999993   335677777776653

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.91  E-value=1.6e-09  Score=67.08  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+|||.++........ ....+    .+.|.|.++...|+|.|+|.|.|..|.......|.
T Consensus       355 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          355 FNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             EEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence            789999999975432211 11111    24699999999999999999999998776555554

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.91  E-value=6.7e-09  Score=57.64  Aligned_cols=48  Identities=8%  Similarity=0.042  Sum_probs=38.0

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .++.+....+...|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|..
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           59 ARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             ccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcC
Confidence            57777666667799999999999999999999998754 2344666655

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.91  E-value=1.7e-09  Score=56.77  Aligned_cols=47  Identities=19%  Similarity=0.271  Sum_probs=35.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC-----CcceeEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA-----SGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~-----~g~~~~~~~l~V~~   62 (68)
                      .|+.+.. .+...|.|.+++.+|+|.|.|.+.|.     .|.....+.|.|.+
T Consensus        82 ~R~~~~~-~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           82 GRASVAN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             TTEEESC-TTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             CcEEEec-CCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence            4444432 23467999999999999999999995     45666888888875

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.91  E-value=2.4e-09  Score=58.97  Aligned_cols=63  Identities=19%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             eEEEeCCEEeccCCC----EEEEEeCC-eE--EEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGN----VEIVNVPY-NT--KLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~----~~~~~~~~-~~--~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++.....    .......+ ..  .|.|.+++..|+|.|+|.|.|..|.. ...+.|.|...|
T Consensus        41 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~  111 (212)
T 2v9r_A           41 IEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILR  111 (212)
T ss_dssp             EEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEEC
T ss_pred             EEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEecc
Confidence            689999999874321    11111122 11  24556789999999999999999976 456777776543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.91  E-value=4.8e-09  Score=61.00  Aligned_cols=64  Identities=9%  Similarity=0.092  Sum_probs=45.4

Q ss_pred             CeEEEe--CCEEec------------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCC
Q psy7044           1 MFDIFC--PRSQVR------------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILK   64 (68)
Q Consensus         1 ~~~W~k--~g~~l~------------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p   64 (68)
                      .+.|+|  +|..+.            ...++.+........|.|.+++.+|+|.|.|.|.|..+ .-.....|.|.+..
T Consensus       192 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  270 (282)
T 1qok_A          192 YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKRAA  270 (282)
T ss_dssp             CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEeccc
Confidence            378999  665441            13577766566677899999999999999999998654 23455677776543

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.91  E-value=2e-09  Score=56.73  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      ...|.|.+++.+|+|.|.|.+.|..|..++.++|.|
T Consensus        83 ~~sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           83 NASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEECCCChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            457999999999999999999999999999999987

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.91  E-value=2.4e-09  Score=62.65  Aligned_cols=62  Identities=15%  Similarity=0.069  Sum_probs=43.2

Q ss_pred             eEEEeCCEEeccCCCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~~~   63 (68)
                      +.|+|+|..+.......... ......|.|.+++..|+|.|+|.|.|..|..     ...+.|.|.+.
T Consensus       149 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~  216 (316)
T 3vh8_G          149 FFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP  216 (316)
T ss_dssp             EEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS
T ss_pred             EEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC
Confidence            67999998875321111111 1234679999999999999999999998842     45566777653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.90  E-value=5.1e-09  Score=57.68  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCC-cceeEEEEEEEEcCCc
Q psy7044          27 KLSIVDILRKNSGVYRIKAENAS-GKDEADVEITVLILKE   65 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a~n~~-g~~~~~~~l~V~~~p~   65 (68)
                      .|.|.+++..|+|.|+|.+.|.. +.....+.|.|..+|.
T Consensus        72 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~  111 (208)
T 3r4d_A           72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVT  111 (208)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCC
T ss_pred             eEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCC
Confidence            69999999999999999999995 5667888899987644

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.90  E-value=1e-08  Score=58.68  Aligned_cols=58  Identities=7%  Similarity=0.062  Sum_probs=43.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcC---CCCCCCEE--EEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVD---ILRKNSGV--YRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~---~~~~d~G~--Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++..    .+.....  .|.+..   ++..|+|.  |+|.|.|..|.....+.|.|...|.
T Consensus        38 v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~  100 (265)
T 2oz4_A           38 VHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  100 (265)
T ss_dssp             EEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             EEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCC
Confidence            789999999874    2332232  344443   37788885  9999999999999999999987654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.90  E-value=3.8e-09  Score=60.42  Aligned_cols=50  Identities=8%  Similarity=-0.032  Sum_probs=38.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      .++.+........|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|.+.|
T Consensus       197 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          197 KRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            57777766777889999999999999999999976533 556788887654

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.90  E-value=1.8e-08  Score=51.27  Aligned_cols=46  Identities=9%  Similarity=0.056  Sum_probs=34.5

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITV   60 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V   60 (68)
                      .|+.+........|.|.+++.+|+|.|.|.|.|.... -.....|.|
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~L~V  106 (108)
T 1jhl_L           60 SRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNEYPWTFGGGTKLEI  106 (108)
T ss_dssp             TTEEEEESSSEEEEEECSCCTTCCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             ceEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEE
Confidence            5777765556778999999999999999999997532 233445555

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.90  E-value=5.3e-09  Score=59.66  Aligned_cols=50  Identities=12%  Similarity=0.107  Sum_probs=37.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~~p   64 (68)
                      .++.+........|.|.+++.+|+|.|.|.|.|..+.   ....+.|.|.+.|
T Consensus        63 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           63 DRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC---
T ss_pred             CcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCC
Confidence            5777776667789999999999999999999997653   3345677777654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.90  E-value=3.9e-09  Score=57.34  Aligned_cols=48  Identities=21%  Similarity=0.314  Sum_probs=38.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|+|..+...          .+.|.|.+++..|+|.|+|.|.|..+....  .|.|.
T Consensus        37 i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~--~l~V~   84 (176)
T 1f2q_A           37 TKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQVNESEPV--YLEVF   84 (176)
T ss_dssp             CEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTTSSCCCCE--EEEEE
T ss_pred             EEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcCCccccccE--EEEEe
Confidence            6899999998732          347999999999999999999998775544  44444

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.89  E-value=6.3e-09  Score=53.57  Aligned_cols=42  Identities=19%  Similarity=0.103  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      ...|.|.+++.+|+|.|.|.+.+........+.|.|...|.+
T Consensus        73 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~~p  114 (115)
T 2or7_A           73 NVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP  114 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEECCTTSCEEEEEEEEEESCC--
T ss_pred             eEEEEEccCCHHHCEEEEEEEECCCceeEEEEEEEEcCCCCC
Confidence            457999999999999999999987666678888888766543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.89  E-value=4.9e-09  Score=60.03  Aligned_cols=49  Identities=18%  Similarity=0.277  Sum_probs=38.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|..+.....          .+   .++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus       217 i~W~~~~~~~~~~g~----------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p  265 (265)
T 2oz4_A          217 LKCLKDGTFPLPIGE----------SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP  265 (265)
T ss_dssp             EEEEETTTEECCTTS----------CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEECCcccCCCCc----------EE---EeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence            679999874332221          11   37789999999999999999999999998753

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.89  E-value=9.1e-09  Score=59.60  Aligned_cols=51  Identities=6%  Similarity=-0.017  Sum_probs=37.1

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILK   64 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p   64 (68)
                      ..|+.+....+...|.|.+++.+|+|.|.|.|.|..+. ....+.|.|...|
T Consensus        70 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~  121 (276)
T 3auv_A           70 PSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGG  121 (276)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC----
T ss_pred             CCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCC
Confidence            35777776666778999999999999999999998764 3334566666543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.88  E-value=1.3e-09  Score=60.53  Aligned_cols=55  Identities=7%  Similarity=0.016  Sum_probs=40.5

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|+|||.++..+...  ... .++    .+.|.|.++..+|+|.|+|.|.|..+....++.
T Consensus       148 v~W~k~g~~l~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          148 VTWEADGTPITQGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             EEEEETTEEECTTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             EEEEcCCcccCCCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            7899999999742110  011 121    245999999999999999999999987776654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.88  E-value=1e-09  Score=68.77  Aligned_cols=40  Identities=20%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCcC
Q psy7044          27 KLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKEN   66 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~~   66 (68)
                      .|.|.+++..|+|.|+|.+.|..|.. ...+.|.|..+|..
T Consensus       433 ~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~  473 (581)
T 3o3u_N          433 SLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGK  473 (581)
T ss_dssp             CEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCC
T ss_pred             eEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCC
Confidence            69999999999999999999999987 88899999886654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.88  E-value=6.4e-09  Score=58.96  Aligned_cols=61  Identities=11%  Similarity=0.095  Sum_probs=43.8

Q ss_pred             CeEEEe--CCEEec------------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEE
Q psy7044           1 MFDIFC--PRSQVR------------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVL   61 (68)
Q Consensus         1 ~~~W~k--~g~~l~------------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~   61 (68)
                      .+.|+|  +|..+.            ...++.+........|.|.+++.+|+|.|.|.|.|..+.. .....|.|.
T Consensus       166 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          166 NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            378999  565431            1356666545556789999999999999999999975533 445566665

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.88  E-value=3e-10  Score=56.64  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=30.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCC-CCCCCEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDI-LRKNSGVYRIKAEN   47 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~-~~~d~G~Y~c~a~n   47 (68)
                      ++|+|||.+|..+         ....|.|.++ +.+|+|.|+|.|.+
T Consensus        29 i~W~kdg~~l~~~---------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           29 LKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CEEEETTEECTTC---------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             EEEEECCEECcCC---------CCCEEEECccCccCcCEEEEEEEcc
Confidence            6899999999743         2236999995 88999999999876

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.88  E-value=1.1e-08  Score=58.33  Aligned_cols=48  Identities=13%  Similarity=0.058  Sum_probs=37.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .|+.+....+...|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|..
T Consensus        98 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L           98 DRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             CceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeC
Confidence            57777666677799999999999999999999987633 2335666654

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.88  E-value=9.4e-09  Score=57.02  Aligned_cols=48  Identities=13%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-c--eeEEEEEEEE
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-K--DEADVEITVL   61 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~--~~~~~~l~V~   61 (68)
                      ..++.+....+...|.|.+++.+|+|.|.|.|.|..+ .  ....+.|.|.
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~  107 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVL  107 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEc
Confidence            3677777666778999999999999999999997322 2  1334566664

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.88  E-value=7.7e-09  Score=57.71  Aligned_cols=48  Identities=13%  Similarity=0.083  Sum_probs=36.0

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc----eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK----DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~----~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..+.    ....+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           66 GRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            56666543  34578999999999999999999998742    22356777765

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.87  E-value=1.8e-09  Score=63.05  Aligned_cols=41  Identities=20%  Similarity=0.275  Sum_probs=34.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEE-cCCcceeEEEEEEEEcCCc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAE-NASGKDEADVEITVLILKE   65 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~-n~~g~~~~~~~l~V~~~p~   65 (68)
                      ...|.|.+++.+|+|.|+|.|. |..|.....+.|.|...|.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~  119 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQ  119 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCE
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCc
Confidence            3569999999999999999886 5667778888888887774

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.87  E-value=2.6e-10  Score=63.31  Aligned_cols=57  Identities=7%  Similarity=-0.028  Sum_probs=40.5

Q ss_pred             eEEEeCCEEeccCCCEEE--EE-eCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEI--VN-VPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~--~~-~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|||.++..+.....  .. .++    .+.|.|.+++.+|+|.|+|.|.|..........+
T Consensus       146 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i  209 (213)
T 3d9a_L          146 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  209 (213)
T ss_dssp             EEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence            789999999975411111  00 111    3489999999999999999999999876444443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.87  E-value=1.7e-09  Score=60.01  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=40.9

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~~   63 (68)
                      +.|+|+|..+...... ..........|.|.+++++|+|.|+|.|.|..+     ..+..+.|.|.+.
T Consensus        38 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~  105 (201)
T 1nkr_A           38 FLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGL  105 (201)
T ss_dssp             EEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECS
T ss_pred             EEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeecc
Confidence            6899999766421110 001111246799999999999999999997632     3345667777754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.87  E-value=7.7e-09  Score=62.49  Aligned_cols=49  Identities=10%  Similarity=0.055  Sum_probs=38.9

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      ..++.+....+...|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus        63 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~  112 (438)
T 1qgc_4           63 PDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKR  112 (438)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECC
T ss_pred             cCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecC
Confidence            357777766677899999999999999999999998843 4446666653

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.87  E-value=1.1e-09  Score=60.30  Aligned_cols=40  Identities=10%  Similarity=0.131  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEcCC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLILK   64 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~p   64 (68)
                      ...|.|.+++.+|+|.|.|.|.|..|.... ...+.+..+|
T Consensus        82 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~  122 (225)
T 4fmk_A           82 DATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQP  122 (225)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             cEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCC
Confidence            356999999999999999999999886644 4445554444

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.87  E-value=8.6e-09  Score=58.46  Aligned_cols=41  Identities=20%  Similarity=0.292  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|..+|.
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~  121 (248)
T 3pv7_A           81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA  121 (248)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCE
T ss_pred             cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCc
Confidence            34599999999999999999999999988999999988774

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.87  E-value=4.7e-09  Score=61.36  Aligned_cols=52  Identities=21%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             CCEEEE-EeCCeEEEEEcCCCCCCCEEEEEE-EEcCCcceeEEEEEEEEcCCcC
Q psy7044          15 GNVEIV-NVPYNTKLSIVDILRKNSGVYRIK-AENASGKDEADVEITVLILKEN   66 (68)
Q Consensus        15 ~~~~~~-~~~~~~~l~I~~~~~~d~G~Y~c~-a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .|+.+. .......|.|.+++..|+|.|+|. +.|..|.....+.|.|..+|..
T Consensus        80 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~  133 (331)
T 3u83_A           80 ERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN  133 (331)
T ss_dssp             TTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE
T ss_pred             CceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc
Confidence            455443 122345799999999999999998 6677888899999999987753

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.86  E-value=3.9e-10  Score=66.03  Aligned_cols=62  Identities=8%  Similarity=0.037  Sum_probs=33.5

Q ss_pred             eEEEeCCEEeccCCCEEEE-EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-----eeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIV-NVPYNTKLSIVDILRKNSGVYRIKAENASGK-----DEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~-~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-----~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|.++......... .......|.|.+++  |+|.|+|.|.|..+.     .+..+.|.|.++|+
T Consensus       249 ~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p~  316 (316)
T 3vh8_G          249 YHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNPS  316 (316)
T ss_dssp             EEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC-------
T ss_pred             EEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCCC
Confidence            6899999876521111111 11123689999999  999999999998773     46678888888874

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.86  E-value=2.2e-08  Score=58.56  Aligned_cols=62  Identities=11%  Similarity=0.007  Sum_probs=44.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~p~~   66 (68)
                      +.|+|||.+|..+ ++.+. .+..+.|.|.++++.| |.|+|.|.|..+..  ...+.|.+..+|+.
T Consensus        43 i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~~-g~Y~C~a~~~g~~~~~~~~~~l~v~~~P~~  106 (303)
T 1i1r_A           43 IVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASLN-IQLTCNILTFGQLEQNVYGITIISGLPPEK  106 (303)
T ss_dssp             EEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCSE-EEEEEEEEETTTEEEEEEEEEEEEECCCCC
T ss_pred             eEEEECCEECChh-heeee-CCcEEEEEEcCcCCCc-eEEEEecccCCCcceEEEEEEEeccCCCCC
Confidence            7899999999743 44443 3446789999999985 99999998853222  23466777777754

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.86  E-value=2.4e-08  Score=52.05  Aligned_cols=50  Identities=10%  Similarity=0.056  Sum_probs=37.0

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC-c-ceeEEEEEEEEcC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS-G-KDEADVEITVLIL   63 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g-~~~~~~~l~V~~~   63 (68)
                      ..|+.+........|.|.+++.+|+|.|.|.+.|.. . .-.....|.|.+.
T Consensus        59 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~fg~gt~L~V~~~  110 (120)
T 1mqk_L           59 PSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHYGTPPLTFGGGTKLEIKRE  110 (120)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSSCCBCCCEEEEEC--
T ss_pred             CceEEEeccCCEEEEEECCCCHHHCEEEEEEEEeCCCceEECCCeEEEEecC
Confidence            357777666667789999999999999999999864 2 2344567777654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.85  E-value=2.5e-09  Score=54.70  Aligned_cols=58  Identities=12%  Similarity=0.145  Sum_probs=39.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc----ceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG----KDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g----~~~~~~~l~V~~   62 (68)
                      +.|+|+|..+.. .  ..........|.|.+++.+|+|.|.|.+.|...    ..+..+.|.|.+
T Consensus        35 ~~w~k~g~~~~~-~--~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~~~~~s~~Sdpl~L~V~~   96 (105)
T 2vsd_A           35 VQLWLNGTLRFD-K--EKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELVLTI   96 (105)
T ss_dssp             EEEEETTEEEEE-E--EECTTCSEEEEEEECCSGGGCEEEEEEEEEETTEEECCCCCCEEECCC-
T ss_pred             EEEEECCcccee-e--eccCCCCEEEEEECCCCHHHCeEEEEEEEcCCCCcccCCCCCEEEEEEE
Confidence            579999987642 1  111233457899999999999999999999642    224446666654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.85  E-value=1.1e-09  Score=65.23  Aligned_cols=55  Identities=20%  Similarity=0.273  Sum_probs=44.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      .+.|+|+|..+.        .  ....|.|.+++.+|+|.|+|.|.|..+.....+.|.|...|.
T Consensus       127 ~v~W~~~~~~~~--------~--~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~  181 (363)
T 1wio_A          127 SVQCRSPRGKNI--------Q--GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK  181 (363)
T ss_dssp             CEEEECSSSCEE--------E--ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC
T ss_pred             eEEEEcCCCccc--------c--cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC
Confidence            378999875432        1  224799999999999999999999988888888888887664

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.84  E-value=1.9e-09  Score=61.99  Aligned_cols=59  Identities=12%  Similarity=0.001  Sum_probs=45.2

Q ss_pred             CeEEEeC-CEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044           1 MFDIFCP-RSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~-g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .+.|+++ +.++....++.+...   ..|.|.+++..|+|.|+|.|.|..|.. ...+.|.|..
T Consensus       121 ~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          121 GVSLVRVRGRPLMRHTNYSFSPW---HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             SEEEEEGGGCCCCSSCCEECCSS---SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             eEEEEecCCCccccCCcccccCC---ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            3789997 667665555543222   239999999999999999999998865 4478888886

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.84  E-value=1.2e-08  Score=57.89  Aligned_cols=50  Identities=8%  Similarity=-0.029  Sum_probs=37.8

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLIL   63 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~   63 (68)
                      ..|+.+....+...|.|.+++.+|+|.|.|.|.|..+. ....+.|.|...
T Consensus        64 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  114 (247)
T 1svz_A           64 PDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGG  114 (247)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             CCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECC
Confidence            35777766666778999999999999999999998764 233466777654

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.84  E-value=5.5e-09  Score=53.97  Aligned_cols=42  Identities=12%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEEcCCcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVLILKEN   66 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~~~p~~   66 (68)
                      ...|.|.+++.+|+|.|.|.+.|..+.  ....+.|.|.++|..
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~~  123 (124)
T 1neu_A           80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVPT  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC----
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCCCC
Confidence            457999999999999999999998885  477899999998764

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.84  E-value=2.3e-08  Score=56.58  Aligned_cols=56  Identities=14%  Similarity=0.125  Sum_probs=39.1

Q ss_pred             CCEEeccC---CCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCCc----ceeEEEEEEEEc
Q psy7044           7 PRSQVRSE---GNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENASG----KDEADVEITVLI   62 (68)
Q Consensus         7 ~g~~l~~~---~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g----~~~~~~~l~V~~   62 (68)
                      ++..+...   .|+.+.. ......|.|.+++.+|+|.|.|.|.|..+    .....+.|.|..
T Consensus        54 ~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           54 SKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             SCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             CCceecCcccCCcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEec
Confidence            54444432   5666654 34567899999999999999999998754    223445677764

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.83  E-value=2.9e-08  Score=53.12  Aligned_cols=65  Identities=14%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             eEEEeC---CEEe----ccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc---ceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCP---RSQV----RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG---KDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~---g~~l----~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g---~~~~~~~l~V~~~p~~   66 (68)
                      +.|++.   |+.+    ...+|+.+........|+|.+++.+|+|.|.|.+.+..+   .-.....|.|.+.|..
T Consensus        49 v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~fg~GT~L~V~~~p~~  123 (134)
T 3kg5_A           49 VSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTL  123 (134)
T ss_dssp             CEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECTTTCCEEECCCEEEEEECC---
T ss_pred             EEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcCCCCceEECCCEEEEEecCCCH
Confidence            679987   4322    234678777666678899999999999999999998743   2345678888887754

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.83  E-value=4e-09  Score=61.27  Aligned_cols=41  Identities=24%  Similarity=0.351  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcC-CcceeEEEEEEEEcCCc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENA-SGKDEADVEITVLILKE   65 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~-~g~~~~~~~l~V~~~p~   65 (68)
                      ...|.|.+++.+|+|.|+|.|.|. .|.....+.+.+...|.
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~  114 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPT  114 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCE
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccc
Confidence            457999999999999999999986 55667778887776553

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.83  E-value=2.4e-08  Score=56.76  Aligned_cols=51  Identities=12%  Similarity=0.072  Sum_probs=37.5

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      ..|+.+........|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|..+|
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           59 PSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCC
Confidence            357777666667789999999999999999999986632 334567776654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.82  E-value=1.1e-09  Score=62.40  Aligned_cols=54  Identities=7%  Similarity=0.018  Sum_probs=38.6

Q ss_pred             eEEEeCCEEeccC--CCEEEEEe-C----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           2 FDIFCPRSQVRSE--GNVEIVNV-P----YNTKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         2 ~~W~k~g~~l~~~--~~~~~~~~-~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      +.|+|||.++..+  ........ +    ..+.|.|.++..+|+|.|+|.|.|........
T Consensus       188 v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  248 (254)
T 2c1o_A          188 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIV  248 (254)
T ss_dssp             EEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred             EEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCCcce
Confidence            7899999998754  11111101 1    13579999999999999999999999875433

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.82  E-value=1.9e-09  Score=59.18  Aligned_cols=45  Identities=16%  Similarity=0.277  Sum_probs=35.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +.|+|+|..+......    ......|.|.+++.+|+|.|+|.|.|..+
T Consensus       124 ~~w~k~g~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          124 FALYKEGDPAPYKNPE----RWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEEEECCCCTTSCCCC----EEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EEEEECCCcCcceecC----CCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            6899999988642221    12235689999999999999999999875

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.82  E-value=1.1e-09  Score=60.89  Aligned_cols=55  Identities=7%  Similarity=-0.034  Sum_probs=38.6

Q ss_pred             eEEEeCCEEeccCCCE--EEE-EeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044           2 FDIFCPRSQVRSEGNV--EIV-NVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~-~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      +.|+|||.++..+...  ... ..++    .+.|.|.++..+|+|.|+|.|.|.........
T Consensus       145 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  206 (210)
T 1lk3_L          145 VKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVK  206 (210)
T ss_dssp             EEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEEE
T ss_pred             EEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeeee
Confidence            6899999998743011  011 0111    24799999999999999999999988654433

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.82  E-value=1.4e-08  Score=57.53  Aligned_cols=49  Identities=14%  Similarity=0.057  Sum_probs=36.9

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVLIL   63 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~~~   63 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..+.  ....+.|.|...
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           68 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSC
T ss_pred             CcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecc
Confidence            57776653  34678999999999999999999998432  234457777754

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.82  E-value=4.6e-08  Score=51.40  Aligned_cols=63  Identities=13%  Similarity=-0.057  Sum_probs=41.8

Q ss_pred             CeEEEeCC----EEeccCCCEE--EEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcC
Q psy7044           1 MFDIFCPR----SQVRSEGNVE--IVNVP--YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLIL   63 (68)
Q Consensus         1 ~~~W~k~g----~~l~~~~~~~--~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~   63 (68)
                      .++|-|.|    .+|.......  +...+  ....|.|.++...|+|.|+|.|.|..|.. +....|.|.+.
T Consensus        46 nVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g~ieSHs~ti~V~~~  117 (122)
T 1xau_A           46 NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVRER  117 (122)
T ss_dssp             CEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             cEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCCceeeeEEEEEEEee
Confidence            47898866    4554322221  22112  34589999999999999999999999966 44455666553

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.82  E-value=1.4e-08  Score=58.67  Aligned_cols=51  Identities=8%  Similarity=-0.054  Sum_probs=39.1

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILK   64 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p   64 (68)
                      ..|+.+........|.|.+++.+|+|.|.|.+.|..+. ....+.|.|...|
T Consensus        69 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~  120 (264)
T 2gjj_A           69 PDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGG  120 (264)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-
T ss_pred             CccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCC
Confidence            36777766566779999999999999999999998763 2344677777654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.81  E-value=2.8e-08  Score=57.13  Aligned_cols=50  Identities=12%  Similarity=0.078  Sum_probs=37.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc-----eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK-----DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-----~~~~~~l~V~~~p   64 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..|.     ....+.|.|...|
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  122 (256)
T 1nqb_A           66 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI  122 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC
T ss_pred             CeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccc
Confidence            57776653  34678999999999999999999999773     2234566665544

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.81  E-value=7.2e-09  Score=55.67  Aligned_cols=52  Identities=19%  Similarity=0.180  Sum_probs=38.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      .+.|+|+|.++.....          .+.|.+++..|+|.|+|.|.|..+..  .+.|.|...|
T Consensus        36 ~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~~~~~s~--~~~l~v~~~~   87 (170)
T 3ry4_A           36 SIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQTSLSD--PVHLTVLFEW   87 (170)
T ss_dssp             CEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEETTSBCCC--CEEEEEECCS
T ss_pred             eEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEeCCCceE--eEEEEEECCc
Confidence            3789999999975322          35677899999999999999866554  4555565543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.80  E-value=1.6e-08  Score=61.13  Aligned_cols=49  Identities=14%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             CCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEc
Q psy7044          14 EGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLI   62 (68)
Q Consensus        14 ~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~   62 (68)
                      ..++.+...  .+...|.|.+++.+|+|.|+|.|.|..|     .....+.|.|..
T Consensus       283 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~  338 (438)
T 1qgc_4          283 KGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSA  338 (438)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECS
T ss_pred             CCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEec
Confidence            356766554  3466899999999999999999999655     223445666653

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.80  E-value=1.7e-08  Score=51.60  Aligned_cols=51  Identities=16%  Similarity=0.311  Sum_probs=35.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC-c-ceeEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS-G-KDEADVEITVLILKE   65 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g-~~~~~~~l~V~~~p~   65 (68)
                      +|+.+...  .+...|.|.+++.+|+|.|.|.+.+.. | .....+.|.|...|.
T Consensus        55 ~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~g~~~~~~~~v~v~V~p~  109 (110)
T 2q87_A           55 GRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFPA  109 (110)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTSCCBCCCSEEEEEEEC--
T ss_pred             CCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEecCccCccCCccEEEEEEEecC
Confidence            56666532  345789999999999999999999986 5 233445555555554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.79  E-value=1.4e-08  Score=56.25  Aligned_cols=50  Identities=22%  Similarity=0.303  Sum_probs=36.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCccee----EEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDE----ADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~----~~~~l~V~~~p   64 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..+...    ..+.|.|.+.|
T Consensus        69 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~  124 (214)
T 2zg1_A           69 GRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI  124 (214)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC
T ss_pred             CceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC
Confidence            45554321  2345799999999999999999999875332    46788888754

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.79  E-value=1.4e-08  Score=56.40  Aligned_cols=47  Identities=11%  Similarity=0.094  Sum_probs=34.0

Q ss_pred             CCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          14 EGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        14 ~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      ..|+.+...  .+...|.|.+++.+|+|.|.|.|.|.. .....+.|.|.
T Consensus        64 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~  112 (210)
T 3d9a_H           64 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGD-YWGQGTLVTVS  112 (210)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSS-CBCCCEEEEEC
T ss_pred             CceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCc-ccccceEEEec
Confidence            357776543  245689999999999999999999974 22233556665

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.79  E-value=1e-08  Score=53.45  Aligned_cols=36  Identities=14%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITV   60 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V   60 (68)
                      ...|.|.+++.+|+|.|.|.+.+ ..|...+.+.|.|
T Consensus        92 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  128 (128)
T 3r0n_A           92 DATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV  128 (128)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEEC
Confidence            44899999999999999998664 6788888888765

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.79  E-value=1.8e-09  Score=65.73  Aligned_cols=57  Identities=12%  Similarity=0.084  Sum_probs=40.6

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|+|.++...... .....+    ..+.|.|.+++..|+|.|+|.|.|..|.......+
T Consensus       276 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v  337 (444)
T 1igt_B          276 ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTI  337 (444)
T ss_dssp             EEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEE
Confidence            6899999998643221 111111    23579999999999999999999999977433333

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.79  E-value=4.1e-08  Score=57.04  Aligned_cols=50  Identities=14%  Similarity=0.183  Sum_probs=36.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc-----eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK-----DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-----~~~~~~l~V~~~p   64 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|.     ....+.|.|...|
T Consensus        92 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  148 (282)
T 1qok_A           92 GKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGG  148 (282)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC--
T ss_pred             CcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCC
Confidence            57766553  34578999999999999999999999871     1234577777654

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.79  E-value=1.5e-08  Score=53.52  Aligned_cols=50  Identities=20%  Similarity=0.193  Sum_probs=40.2

Q ss_pred             CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEEcCC
Q psy7044          15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~~~p   64 (68)
                      +|+.+..  ......|.|.+++.+|+|.|.|.+.|..+..    ...+.|.|.++|
T Consensus        62 ~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           62 CRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             CcEEEEEcCCCCEEEEEECCCChhHCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            4666653  2346789999999999999999999998865    566899998765

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.79  E-value=4.5e-08  Score=56.16  Aligned_cols=48  Identities=21%  Similarity=0.111  Sum_probs=35.6

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcC--CcceeEEEEEEEEc
Q psy7044          15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENA--SGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~--~g~~~~~~~l~V~~   62 (68)
                      +|+.+... .+...|.|.+++.+|+|.|.|.+.|.  .+.......|.|.+
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLE  138 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEES
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEec
Confidence            56666542 33578999999999999999999984  44445556777765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.78  E-value=2.5e-08  Score=60.59  Aligned_cols=59  Identities=8%  Similarity=0.065  Sum_probs=45.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEE--EEEcCCCCCCCE--EEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTK--LSIVDILRKNSG--VYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~--l~I~~~~~~d~G--~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++|.++..  ++  ....+...  +.+ +++..|+|  .|+|.|.|..|.....+.|.|...|.
T Consensus       223 ~~W~~~~~~~~~--~~--~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~  285 (450)
T 1z7z_I          223 VHLALGDQRLNP--TV--TYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA  285 (450)
T ss_dssp             EEEEETTEECCC--EE--EEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred             EEEeCCCEeCCc--eE--EecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCC
Confidence            689999999874  33  22333222  233 78999999  99999999999999999999988543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.78  E-value=9.5e-09  Score=58.60  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVL   61 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~   61 (68)
                      ..|.|.+++.+|+|.|+|.|.|..+..  ...+.|.|.
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            579999999999999999999987654  455666664

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.78  E-value=1.2e-09  Score=59.59  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ...|.|.+++..|+|.|+|.+.|..|.
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~   93 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKEE   93 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEEE
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCCc
Confidence            556999999999999999999998763

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.77  E-value=9.2e-09  Score=59.22  Aligned_cols=59  Identities=12%  Similarity=0.063  Sum_probs=41.9

Q ss_pred             eEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~~   62 (68)
                      +.|+|+|..+... .+.  ........|.|.++++.|+|.|+|.+.|..+.  .+..+.|.|.+
T Consensus        37 ~~w~k~g~~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           37 YQLHFEGSLFAVDRPKP--PERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             EEEEETTEEEEEECCSS--CTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             EEEEECCCccccccccc--cCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeec
Confidence            6899999887521 000  01223567999999999999999999997663  34567777765

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.77  E-value=2.8e-08  Score=58.09  Aligned_cols=51  Identities=10%  Similarity=0.042  Sum_probs=37.5

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILK   64 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p   64 (68)
                      ..++.+........|.|.+++.+|+|.|.|.|.|..... .....|.|.+.+
T Consensus       223 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~  274 (291)
T 2gki_A          223 PDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHH  274 (291)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC-
T ss_pred             CCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeE
Confidence            357776656667789999999999999999999965422 334566666554

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.77  E-value=1.5e-08  Score=58.35  Aligned_cols=50  Identities=10%  Similarity=0.008  Sum_probs=35.8

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLIL   63 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~   63 (68)
                      ..|+.+....+...|.|.+++.+|+|.|.|.+.|..+. ....+.|.|...
T Consensus        78 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  128 (268)
T 1x9q_A           78 PDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSS  128 (268)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC----
T ss_pred             cccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccC
Confidence            35777766666778999999999999999999998653 233456666543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.76  E-value=3.6e-08  Score=55.90  Aligned_cols=49  Identities=10%  Similarity=0.105  Sum_probs=37.7

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      ..++.+........|.|.+++.+|+|.|.|.|.|..+.. .....|.|..
T Consensus        62 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           62 PSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEEC
Confidence            357777666777899999999999999999999987743 3345666655

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.76  E-value=3.8e-08  Score=50.51  Aligned_cols=48  Identities=27%  Similarity=0.335  Sum_probs=34.4

Q ss_pred             CCCEEEEE---eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEE
Q psy7044          14 EGNVEIVN---VPYNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVL   61 (68)
Q Consensus        14 ~~~~~~~~---~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~   61 (68)
                      ..|+.+..   ......|.|.+++.+|+|.|.|.+.|..|..    .....|.|.
T Consensus        56 ~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~fg~gT~L~V~  110 (113)
T 1h5b_A           56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             ETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECSSSSSSCEECCCEEEEEE
T ss_pred             CCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecCCCCcEEEECCCcEEEEE
Confidence            35666543   2346689999999999999999999987621    234456555

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.76  E-value=8.7e-09  Score=57.57  Aligned_cols=59  Identities=8%  Similarity=0.053  Sum_probs=37.9

Q ss_pred             CeEEEe---CCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEc
Q psy7044           1 MFDIFC---PRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLI   62 (68)
Q Consensus         1 ~~~W~k---~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~   62 (68)
                      .+.|++   ||..+..+.++...  . ...|.|.+++.+|+|.|+|.|.|..+.... .+.|.|..
T Consensus        39 ~v~w~~~~~~g~~~~~~~~~~~~--~-~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~  101 (213)
T 2x1w_L           39 NVSLCARYPEKRFVPDGNRISWD--S-KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG  101 (213)
T ss_dssp             CEEEEEETTTEEECCCSSSCEEE--T-TTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECB
T ss_pred             EEEEEhhcCCCccccCCCccccc--C-CccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeC
Confidence            368987   47777655444332  1 235999999999999999999996554433 26666643

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.76  E-value=6.6e-09  Score=57.64  Aligned_cols=54  Identities=7%  Similarity=0.044  Sum_probs=38.6

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      +.|+|||.++..+...  .....++    .+.|.|..+..+|+|.|+|.|.|..+..+.+
T Consensus       149 v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          149 VDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             EEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            7899999999753211  0111111    2469999999999999999999998765444

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.75  E-value=6.7e-09  Score=57.67  Aligned_cols=55  Identities=4%  Similarity=-0.002  Sum_probs=36.1

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY---NTKLSIVDILRKNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      +.|+|||.++..+...  .......   .+.|.|......|+|.|+|.|.|+.+..+.++
T Consensus       155 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          155 VAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            7899999999752111  1111111   23488999988999999999999998776554

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.75  E-value=3.7e-09  Score=58.90  Aligned_cols=57  Identities=5%  Similarity=-0.008  Sum_probs=39.8

Q ss_pred             eEEEeCCEEeccCCCEE--EE-EeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVE--IV-NVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~--~~-~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|||.++..+....  .. ..++    .+.|.|..+..+|+|.|+|.|.|..........+
T Consensus       148 v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i  211 (216)
T 2xzc_L          148 VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  211 (216)
T ss_dssp             EEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence            78999999987431111  11 0111    2479999999999999999999999876544443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.75  E-value=6e-08  Score=54.59  Aligned_cols=48  Identities=10%  Similarity=0.087  Sum_probs=36.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc-----c---eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG-----K---DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~---~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|     .   ....+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             CceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEeccc
Confidence            57776653  3467899999999999999999999875     2   22346777775

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.75  E-value=1e-08  Score=56.74  Aligned_cols=53  Identities=9%  Similarity=0.084  Sum_probs=36.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V   60 (68)
                      +.|+|+|..+.. .+     ....+.|.|..+..+|+|.|+|.|.|..+..  ++.+.|.|
T Consensus       159 v~W~~~~~~~~~-~~-----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          159 FSWTGNALSPLD-PE-----TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             EEEESSTTSSSC-SS-----CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             EEEeCCCCccCC-CC-----ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            689999866432 22     1334679999999999999999999987654  45555443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.75  E-value=1.8e-08  Score=55.78  Aligned_cols=45  Identities=22%  Similarity=0.111  Sum_probs=33.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCC-CCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRK-NSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~-d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|+|+|.++..+.           .|.|....+. |+|.|+|.|.|..|..+..+.
T Consensus       142 i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          142 FRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             EEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence            68999998875322           3555444454 899999999999998866543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.74  E-value=3.4e-08  Score=56.41  Aligned_cols=47  Identities=11%  Similarity=0.080  Sum_probs=35.7

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      ..++.+........|.|.+++.+|+|.|.|.|.|..+.. .....|.|
T Consensus       208 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V  255 (256)
T 3juy_B          208 SDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKLER  255 (256)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred             CCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence            357777666777889999999999999999999965532 33455544

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.74  E-value=5.3e-08  Score=51.03  Aligned_cols=50  Identities=8%  Similarity=0.017  Sum_probs=38.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p   64 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|.... -.....|.|.+.+
T Consensus        64 ~r~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~g  114 (126)
T 4ffy_L           64 ARFSGSGSETDFTLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKGGG  114 (126)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEEC--
T ss_pred             CcEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCcEECCCEEEEEecCC
Confidence            5777776667789999999999999999999987543 3445778887654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.74  E-value=4e-08  Score=56.87  Aligned_cols=50  Identities=14%  Similarity=0.032  Sum_probs=35.0

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC---cc--eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS---GK--DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~---g~--~~~~~~l~V~~~p   64 (68)
                      .++.+...  .....|.|.+++.+|+|.|.|.|.|..   +.  -.....|.|...|
T Consensus       200 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~  256 (276)
T 3auv_A          200 GRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSAS  256 (276)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred             CcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence            57766553  355689999999999999999999983   21  2344677776544

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=1.7e-07  Score=49.42  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcc--ee----EEEEEEEEcCCcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGK--DE----ADVEITVLILKEN   66 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~----~~~~l~V~~~p~~   66 (68)
                      ...|.|.+++.+|+|.|.|.+.|..+.  ..    ..+.|.|.+.|..
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s~  125 (136)
T 2d9c_A           78 DFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSA  125 (136)
T ss_dssp             BCCEEESSCCTTTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCCC
T ss_pred             EEEEEECCCCHHHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCCC
Confidence            457999999999999999999987541  12    4578888887653

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.73  E-value=5.8e-09  Score=58.54  Aligned_cols=55  Identities=13%  Similarity=0.062  Sum_probs=39.6

Q ss_pred             eEEEeCCEEeccCCCEE--EEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044           2 FDIFCPRSQVRSEGNVE--IVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~--~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      +.|+|||.++..+....  ....+    ..+.|.|..+..+|+|.|+|.|.|+.+..+.++
T Consensus       169 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          169 VAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             EEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             EEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            78999999987431100  00111    235799999999999999999999998765544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.73  E-value=1.6e-08  Score=55.41  Aligned_cols=39  Identities=10%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLIL   63 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~   63 (68)
                      ...|.|.+++.+|+|.|.|.+.|..+.... ...+.+..+
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~  117 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVP  117 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeee
Confidence            346999999999999999999998775544 444444443

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.73  E-value=6.2e-08  Score=52.47  Aligned_cols=53  Identities=8%  Similarity=0.023  Sum_probs=36.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCCcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILKENI   67 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p~~~   67 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|.... -.....|.|.+++..|
T Consensus        75 ~Rfs~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~~~~~~~  128 (146)
T 2yc1_B           75 ARFTGSGSGTDFTLTISSLEPEDFAIYYCQQYRYSPRTFGQGTKVEIKRAAAEQ  128 (146)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC------
T ss_pred             CCeEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCeECCCEEEEEeCCcccc
Confidence            5777766666778999999999999999999886431 2344677777665443

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.73  E-value=1.5e-07  Score=48.05  Aligned_cols=35  Identities=6%  Similarity=0.058  Sum_probs=29.7

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      ..|+.+........|.|.+++.+|+|.|.|.+.|.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           61 PSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCcEEEeccCCEEEEEECCCChhhCEEEEEEEeeC
Confidence            35777766566778999999999999999999885

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.72  E-value=8.3e-10  Score=65.76  Aligned_cols=62  Identities=13%  Similarity=0.049  Sum_probs=48.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCE-EEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSG-VYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|++++..+......  ........|.|.+++..|+| .|+|.|.|..|..+..+.|.|..+|.
T Consensus       190 i~W~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~  252 (347)
T 2ifg_A          190 AGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPAS  252 (347)
T ss_dssp             CCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEE
T ss_pred             EEEEcCCceeeccccc--ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCe
Confidence            6799998765422110  12344678999999999999 99999999999998888888876664

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.72  E-value=6.7e-10  Score=61.70  Aligned_cols=53  Identities=8%  Similarity=-0.047  Sum_probs=37.8

Q ss_pred             eEEEeCCEEeccCCCEE--EEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRSEGNVE--IVNVPY---NTKLSIVDILRKNSGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~--~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|+|||.++..+....  ....++   .+.|.|.++..+|+|.|+|.|.|..+....
T Consensus       147 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          147 VTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             EEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             EEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            78999999987432110  000111   245999999999999999999999987443

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.71  E-value=4.8e-08  Score=55.73  Aligned_cols=49  Identities=6%  Similarity=-0.009  Sum_probs=38.1

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLIL   63 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~   63 (68)
                      .++.+........|.|.+++.+|+|.|.|.|.|..... .....|.|.+.
T Consensus       201 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~  250 (257)
T 3gkz_A          201 ARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRA  250 (257)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred             CCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence            56766666677889999999999999999999865533 45567777654

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.71  E-value=2e-08  Score=52.45  Aligned_cols=39  Identities=15%  Similarity=0.332  Sum_probs=32.3

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEc-CCcceeEEEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAEN-ASGKDEADVEITVLIL   63 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n-~~g~~~~~~~l~V~~~   63 (68)
                      ...|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|++.
T Consensus        79 ~~sL~I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE~  118 (123)
T 4gjt_B           79 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLEH  118 (123)
T ss_dssp             BCCEEEESCCSSSCSEEEEEEEESSSCEEEEEEEEEC---
T ss_pred             EEEEEECCCChHHCEEEEEEEEECCCCeEEeEEEEEEEEC
Confidence            45799999999999999998876 6788899999999875

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.69  E-value=3.9e-08  Score=58.27  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+++|..+.. ........  ...|.|.++++.|+|.|+|.   ..|...+.+.|.|.++|+..
T Consensus        39 i~W~~~~~~~~~-~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~V~~pP~~P   98 (325)
T 1n26_A           39 VHWVLRKPAAGS-HPSRWAGM--GRRLLLRSVQLHDSGNYSCY---RAGRPAGTVHLLVDVPPEEP   98 (325)
T ss_dssp             EEEEEECSSSSC-CCEEEEEE--SSEEEECSCCGGGCEEEEEE---SSSSCSCEEEEEECCCCCCC
T ss_pred             EEEEECCccCCc-cccccccc--cceEEecccchhhCeEeEEE---eCCEEeeeEEEEeccCCCCC
Confidence            689998876532 22222222  24799999999999999998   37888889999999888653

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.69  E-value=3.6e-08  Score=50.18  Aligned_cols=34  Identities=12%  Similarity=0.205  Sum_probs=28.3

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      ...|.|.+++.+|+|.|.|.+.|..+.....+.+
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~  101 (110)
T 1ncn_A           68 SWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQ  101 (110)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             CEEEEEcCCChHHCEEEEEEEEcCCCCceEEEEE
Confidence            3579999999999999999999998876554433

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.69  E-value=1.5e-08  Score=56.20  Aligned_cols=56  Identities=14%  Similarity=0.074  Sum_probs=40.1

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|+|||.++..+...  .....++    .+.|.|..+...|+|.|+|.|.|+.+....++.
T Consensus       145 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          145 VAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             EEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            6899999998642110  0111111    257999999999999999999999987766653

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.69  E-value=4.9e-08  Score=54.94  Aligned_cols=50  Identities=12%  Similarity=0.066  Sum_probs=33.1

Q ss_pred             CCEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEEcCC
Q psy7044          15 GNVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~~~p   64 (68)
                      .++.+.. ......|.|.+++.+|+|.|.|.|.|..|..     ...+.|.|...|
T Consensus        61 ~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  116 (238)
T 2p1y_A           61 DGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSA  116 (238)
T ss_dssp             TTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCC
T ss_pred             ceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccC
Confidence            4665543 2335689999999999999999999987631     234567776654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.69  E-value=7.8e-08  Score=54.47  Aligned_cols=36  Identities=17%  Similarity=0.151  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVL   61 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~   61 (68)
                      +.|.|.....+|.|.|+|.|.|..+.  ....+.|.|.
T Consensus       188 s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V~  225 (248)
T 3pv7_A          188 SCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAA  225 (248)
T ss_dssp             EEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC---
T ss_pred             EEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEEc
Confidence            56999999999999999999999996  4556667763

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.68  E-value=1.6e-07  Score=53.10  Aligned_cols=48  Identities=17%  Similarity=0.032  Sum_probs=35.0

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcC----CcceeEEEEEEEEc
Q psy7044          15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENA----SGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~----~g~~~~~~~l~V~~   62 (68)
                      .|+.+... .+...|.|.+++.+|+|.|.|.+.+.    .+.....+.|.|..
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE  116 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEec
Confidence            67766543 34568999999999999999999953    33444556677764

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.68  E-value=2.1e-07  Score=48.47  Aligned_cols=50  Identities=6%  Similarity=0.004  Sum_probs=36.4

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLIL   63 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~   63 (68)
                      ..|+.+........|.|.+++.+|+|.|.|.+.|... .-.....|.|.+.
T Consensus        61 ~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~l~v~~~  111 (119)
T 2e27_L           61 SSRFSGSGSGRDYSFSISNLEPEDAATYYCLQYDNFTWTFGGGTKLEIKRA  111 (119)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEECGGGCCEECCCEEEEEEC-
T ss_pred             CCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEeCC
Confidence            3577776666677899999999999999999998632 1234456666654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.67  E-value=1.4e-08  Score=56.64  Aligned_cols=51  Identities=14%  Similarity=0.137  Sum_probs=36.0

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|+|.++..... .......    ..+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus        39 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           39 FSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             EEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             EEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            789999988752110 0001111    12479999999999999999999999964

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.67  E-value=1.2e-08  Score=57.12  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=31.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|+|||.+|...       ......|.|.++++.|+|.|+|.+.|.
T Consensus        32 i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~   71 (204)
T 1sy6_A           32 ITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQN   71 (204)
T ss_dssp             EEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSS
T ss_pred             EEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCC
Confidence            7899999998632       123357999999999999999997553

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.67  E-value=7.1e-08  Score=53.92  Aligned_cols=48  Identities=15%  Similarity=0.062  Sum_probs=35.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|     .....+.|.|..
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             CceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            57766543  3467899999999999999999999875     223345666654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.67  E-value=5.1e-08  Score=54.85  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .++.+..  ......|.|.+++.+|+|.|.|.|.|..
T Consensus       186 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          186 GRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             TTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            4665542  2345789999999999999999999984

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.67  E-value=7.3e-08  Score=49.18  Aligned_cols=48  Identities=13%  Similarity=0.099  Sum_probs=34.3

Q ss_pred             eEEEeCCEEec------------cCCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVR------------SEGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus         2 ~~W~k~g~~l~------------~~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      +.|+|++..+.            ..+|+.+..  ......|.|.+++.+|+|.|.|.+.|..
T Consensus        34 v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   95 (109)
T 1pew_A           34 VQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDAR   95 (109)
T ss_dssp             CEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEeCC
Confidence            67998762110            135776653  3446789999999999999999999853

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.67  E-value=1.8e-09  Score=60.14  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      ...|.|.+++..|+|.|+|.+.|. +.....+.|.|..+
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~-~~~~~~~~l~V~~~  108 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQ-DFDSAAVSLQVAAP  108 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEEC-CCCCCCCCCCCCBC
T ss_pred             eEEEEECCcccccCEEEEEEEEeC-CCceEEEEEEEEcC
Confidence            457999999999999999999986 44556666666655

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.66  E-value=1.6e-08  Score=56.64  Aligned_cols=57  Identities=7%  Similarity=0.030  Sum_probs=39.9

Q ss_pred             eEEEeCCEEeccCC--CEEEEE-eCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEG--NVEIVN-VPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~--~~~~~~-~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|||.++..+.  ...... .++    .+.|.|.....+|+|.|+|.|+|+......+..+
T Consensus       169 v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  232 (237)
T 3sob_L          169 VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  232 (237)
T ss_dssp             EEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             EEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence            78999999987421  000000 111    3569999999999999999999999876555444

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.66  E-value=1.2e-08  Score=57.14  Aligned_cols=56  Identities=5%  Similarity=-0.007  Sum_probs=38.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+++|.++... .......++    .+.|.|.++...| |.|+|.|.|..|.......|.
T Consensus       161 v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~  220 (222)
T 1q9r_B          161 VTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV  220 (222)
T ss_dssp             EEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEecCCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence            6899999876421 111111121    2469999999999 999999999999876665543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.66  E-value=6.8e-08  Score=56.19  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=36.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~~p   64 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|..+.   -...+.|.|...|
T Consensus       200 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~  252 (280)
T 3fku_X          200 ERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQP  252 (280)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC---
T ss_pred             CCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceEECCCEEEEECCCC
Confidence            5777776667788999999999999999999998732   2344567665443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.65  E-value=3e-07  Score=51.65  Aligned_cols=48  Identities=13%  Similarity=0.059  Sum_probs=36.4

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..+.   ....+.|.|.+
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             CcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecC
Confidence            57776643  34678999999999999999999998663   23345777765

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.65  E-value=5.3e-08  Score=55.74  Aligned_cols=41  Identities=20%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEcCC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLILK   64 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~~p   64 (68)
                      ....|.|.+++.+|+|.|.|.|.|..|..  .....|.|.+.+
T Consensus       208 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~~~  250 (256)
T 3tf7_C          208 EDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLELE  250 (256)
T ss_dssp             SBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEECGG
T ss_pred             CeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEEccc
Confidence            35589999999999999999999998854  445677777653

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.65  E-value=3.7e-08  Score=54.69  Aligned_cols=47  Identities=9%  Similarity=0.114  Sum_probs=34.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+++|.+|. +       ...  .|.+.. .+.|+|.|+|.|.|.+|.......+.
T Consensus       132 ~~W~~~g~~l~-~-------~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~  178 (182)
T 1hnf_A          132 LNLYQDGKHLK-L-------SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS  178 (182)
T ss_dssp             EEEEESSCEEE-E-------ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEECCEECC-C-------CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence            68999999882 1       111  233332 57899999999999999988877664

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.64  E-value=1.4e-07  Score=48.05  Aligned_cols=46  Identities=22%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             eEEEeCC--E----EeccCCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044           2 FDIFCPR--S----QVRSEGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus         2 ~~W~k~g--~----~l~~~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +.|+++.  .    .+....|+.+...  .....|.|.+++.+|+|.|.|.+.|
T Consensus        34 v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           34 TNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            6799863  2    2334467765432  3467899999999999999999998

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.64  E-value=2.9e-08  Score=54.71  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=34.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|+|.+|..        .. ...|.+..  ..|+|.|+|.|.|..|.......+
T Consensus       132 i~W~~~~~~l~~--------~~-~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i  177 (180)
T 2dru_A          132 LKLYQGKEHLRS--------LR-QKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  177 (180)
T ss_dssp             EEEEETTEEEEE--------ES-SSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEEEECCeECcC--------CC-CCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence            689999998861        11 12455533  789999999999999988766543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.64  E-value=6.4e-08  Score=55.26  Aligned_cols=50  Identities=8%  Similarity=0.008  Sum_probs=38.1

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC------------CcceeEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA------------SGKDEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~------------~g~~~~~~~l~V~~~p   64 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|.            .+.....+.|.|...|
T Consensus        72 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~  135 (256)
T 3juy_B           72 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGG  135 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCc
Confidence            47776633  34678999999999999999999997            4444556778887653

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.63  E-value=3e-07  Score=51.73  Aligned_cols=48  Identities=15%  Similarity=0.066  Sum_probs=35.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc------ceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG------KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g------~~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|      .....+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  121 (223)
T 1dee_B           66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS  121 (223)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECS
T ss_pred             CeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEcc
Confidence            57776543  2467899999999999999999999864      122345777764

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.63  E-value=1.7e-08  Score=56.78  Aligned_cols=51  Identities=12%  Similarity=0.069  Sum_probs=36.5

Q ss_pred             eEEEeCCEEeccCCCEEEEE-eC----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN-VP----YNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~-~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|+|.++.......... .+    ..+.|.|.+++.+|+|.|+|.|.|..+..
T Consensus        47 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           47 ISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             EEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             EEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            78999998876321110000 01    13579999999999999999999998854

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.63  E-value=2e-08  Score=53.66  Aligned_cols=65  Identities=11%  Similarity=0.121  Sum_probs=47.1

Q ss_pred             eEEEeCCEEecc--CC-CEEEEE-------------eCCeEEEEEcCCCC-CCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS--EG-NVEIVN-------------VPYNTKLSIVDILR-KNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~-~~~~~~-------------~~~~~~l~I~~~~~-~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|.++|..+..  +. ......             ..+.++|.|.+++. +|+|.|+|.+.+......+.+.|.|...+
T Consensus        38 V~W~~~~~~i~~~~G~~~~~~q~~~~~~a~l~~~~l~~GnaSL~i~~v~~~sD~G~YtC~v~~~~~~~~~~i~Lkv~~~~  117 (127)
T 2jjs_C           38 VKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKYRVVS  117 (127)
T ss_dssp             EEEEETTEEEEEEEGGGTEEECCGGGTTCBCCGGGGGGTBCCEEEEHHHHHTSCEEEEEEEEETTEEEEEEEEEEECCC-
T ss_pred             EEEEECCeEeEeeCCceeeccccccccceEechhhhccCcEEEEEcccccccCCcEEEEEEEeCCceEEEEEEEEEEecc
Confidence            689999987653  21 111110             11336899999999 79999999999999988999999988765


Q ss_pred             cC
Q psy7044          65 EN   66 (68)
Q Consensus        65 ~~   66 (68)
                      .+
T Consensus       118 ~~  119 (127)
T 2jjs_C          118 WS  119 (127)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.63  E-value=2.4e-08  Score=58.06  Aligned_cols=62  Identities=13%  Similarity=0.110  Sum_probs=40.2

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~~   63 (68)
                      +.|+|+|..+....... .........|.|.+++++|+|.|+|.|.|..+     ..+..+.|.|.+.
T Consensus        37 ~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~  104 (257)
T 1b6u_A           37 FLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGL  104 (257)
T ss_dssp             EEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECS
T ss_pred             EEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccC
Confidence            68999987553110000 00012346799999999999999999997532     2355677777753

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.62  E-value=1e-08  Score=59.60  Aligned_cols=62  Identities=10%  Similarity=0.087  Sum_probs=41.8

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~~p~   65 (68)
                      +.|+|+|..+....... .........|.|.+++  |+|.|+|.|.|...     ..+..+.|.|.+.|.
T Consensus       137 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          137 YHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             EEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             EEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            68999998765322111 1111235689999998  99999999998642     335567888888764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.62  E-value=1.7e-07  Score=53.18  Aligned_cols=60  Identities=15%  Similarity=0.124  Sum_probs=41.1

Q ss_pred             eEEEe-CCEEecc---CCCEEEEEeC---CeEEEEEcCCCC--CCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFC-PRSQVRS---EGNVEIVNVP---YNTKLSIVDILR--KNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k-~g~~l~~---~~~~~~~~~~---~~~~l~I~~~~~--~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|++ ||.++..   ....  ...+   ..+.|.|.....  .|.|.|+|.|.|..|.......+.|.+.
T Consensus       160 v~W~~~~g~~l~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~~  228 (232)
T 1dn0_B          160 FSWKYKNNSDISSTRGFPSV--LRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIAE  228 (232)
T ss_dssp             EEEEETTSCEECCEEECCCE--EETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC---
T ss_pred             EEEEcCCCCceeeEEECCcc--ccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCCC
Confidence            68999 9998863   0000  0111   134699998887  8999999999999999888777776653

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.62  E-value=2.7e-07  Score=52.61  Aligned_cols=49  Identities=10%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC----cceeEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS----GKDEADVEITVLIL   63 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~----g~~~~~~~l~V~~~   63 (68)
                      .|+.+...  .....|.|.+++.+|+|.|.|.|.|..    +.....+.|.|.+.
T Consensus        73 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           73 SRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             ccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            46666543  346689999999999999999999973    22334566777664

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.61  E-value=9.9e-08  Score=54.09  Aligned_cols=33  Identities=12%  Similarity=0.212  Sum_probs=27.2

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .++.+...  .....|.|.+++.+|+|.|.|.|.|
T Consensus       197 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          197 GKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            56666543  4456899999999999999999998

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.61  E-value=1.9e-07  Score=47.82  Aligned_cols=47  Identities=19%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             eEEEeC--CE----EeccCCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCP--RS----QVRSEGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~--g~----~l~~~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|+|+  +.    .+....|+.+...  .....|.|.+++.+|+|.|.|.+.|.
T Consensus        34 v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   88 (111)
T 2ywz_A           34 TTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYS   88 (111)
T ss_dssp             EEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEcC
Confidence            679985  32    3334467765432  34678999999999999999999993

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.61  E-value=1.5e-07  Score=47.93  Aligned_cols=35  Identities=9%  Similarity=0.049  Sum_probs=28.2

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|..
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   94 (108)
T 1qfw_M           60 DRFTGSGSATDFTLTISSVQAEDFADYHCGQTYNH   94 (108)
T ss_dssp             TTEECCBCSSEEEEEESSCCTTCCSEEEEEECSSS
T ss_pred             CcEEEEcCCCEEEEEECCCChhhCEEEEEEEccCC
Confidence            46665444456789999999999999999999863

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.61  E-value=8.4e-08  Score=54.08  Aligned_cols=48  Identities=13%  Similarity=0.075  Sum_probs=35.4

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc------c---eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG------K---DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g------~---~~~~~~l~V~~   62 (68)
                      +|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|      .   ....+.|.|..
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~  125 (228)
T 3bae_H           67 SRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSS  125 (228)
T ss_dssp             GGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECS
T ss_pred             CcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecC
Confidence            46666543  2457899999999999999999999875      1   12336777764

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.60  E-value=2.9e-07  Score=46.76  Aligned_cols=36  Identities=11%  Similarity=0.080  Sum_probs=30.1

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ..|+.+....+...|.|.+++.+|+|.|.|.+.|..
T Consensus        59 ~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   94 (107)
T 1i8k_A           59 PSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFNV   94 (107)
T ss_dssp             CTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCEEEEccCCEEEEEECCCCHHHCEEEEEEEeeCC
Confidence            357777666667789999999999999999998863

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.60  E-value=7.3e-08  Score=50.57  Aligned_cols=52  Identities=21%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEcCCcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLILKEN   66 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~~p~~   66 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.+....   ......|.|.+.|+.
T Consensus        75 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~~~~  131 (132)
T 1nko_A           75 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHR  131 (132)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEEECCC--
T ss_pred             ccEEEeCCCCCCceEEEEcccCcccCeeEEEEEEcCCCcccccCCceEEEecccCCC
Confidence            46655321  24568999999999999999999986521   134678888887754

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.60  E-value=4.6e-07  Score=51.09  Aligned_cols=48  Identities=13%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcC---CcceeEEEEEEEEc
Q psy7044          15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENA---SGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~---~g~~~~~~~l~V~~   62 (68)
                      .|+.+... .+...|.|.+++.+|+|.|.|.+.+.   .......+.|.|..
T Consensus        63 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  114 (240)
T 3q5y_A           63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLE  114 (240)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEES
T ss_pred             CeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEec
Confidence            57766543 34678999999999999999999843   22334445666663

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.60  E-value=2.6e-07  Score=51.52  Aligned_cols=47  Identities=19%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcce---eEEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKD---EADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~---~~~~~l~V~   61 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..+..   ...+.|.|.
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  119 (220)
T 1pz5_B           68 GRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVS  119 (220)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEEC
T ss_pred             CcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEc
Confidence            57766543  345689999999999999999999986532   234566665

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.59  E-value=2.3e-08  Score=65.08  Aligned_cols=64  Identities=16%  Similarity=0.128  Sum_probs=43.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+++|.++.......+.  .+...|.|.+++..|+|.|.|.|.|..+     ...+...|.|..+|.+.
T Consensus       564 v~W~~~~~~l~~~~~~~~~--~~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~~~~~~l~V~v~P~~~  632 (663)
T 1olz_A          564 VFWKFQNGVLKAESPKYGL--MGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPV  632 (663)
T ss_dssp             EEEEESSSBCCCCSSSBCC--TTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEEC-----
T ss_pred             EEEEECCeeccccCcceEE--ecCCeEEEEecCcccCeEEEEEEEECccCCCceEEEEEEEEEEEeCCccC
Confidence            6899999987633221111  1234699999999999999999999952     23567888888877653

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.59  E-value=2e-07  Score=56.99  Aligned_cols=48  Identities=8%  Similarity=0.047  Sum_probs=36.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc------------ceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG------------KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g------------~~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..|            .....+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~  127 (457)
T 1hzh_H           66 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSS  127 (457)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECS
T ss_pred             CceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecC
Confidence            57766543  3567899999999999999999999976            233456677764

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.58  E-value=6e-07  Score=46.05  Aligned_cols=35  Identities=11%  Similarity=0.098  Sum_probs=29.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|..
T Consensus        66 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  100 (114)
T 1eeq_A           66 DRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSH  100 (114)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCEEEeecCCEEEEEECCCCcccCEEEEEEEeeCC
Confidence            57777655667789999999999999999998863

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.58  E-value=2.8e-07  Score=47.08  Aligned_cols=34  Identities=12%  Similarity=0.041  Sum_probs=29.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|.
T Consensus        64 ~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           64 VRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEEccCCEEEEEECCCCcccCEEEEEEEecC
Confidence            5777766666778999999999999999999885

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.58  E-value=2.6e-07  Score=56.24  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=36.2

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..+.   ....+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (444)
T 1igt_B           66 GRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSS  118 (444)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECS
T ss_pred             CceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecC
Confidence            57776543  34678999999999999999999998764   23345677763

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.58  E-value=1e-07  Score=53.28  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=35.0

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|.   ....+.|.|..
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             GGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             CcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence            46666543  24578999999999999999999997532   22346777764

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.58  E-value=5.5e-08  Score=53.23  Aligned_cols=47  Identities=13%  Similarity=0.193  Sum_probs=34.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+|||.+|....+.         .|.+.  ...|+|.|+|.|.|.+|.....+.|.
T Consensus       122 i~W~~~~~~l~~~~~~---------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          122 LKLYQGKEHLRSLRQK---------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             EEEEETTEEEEEESSS---------EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEECCEECcCCcce---------EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence            6899999998743221         23333  37899999999999999988776653

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.57  E-value=2.1e-07  Score=52.98  Aligned_cols=35  Identities=14%  Similarity=0.112  Sum_probs=28.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+...  .....|.|.+++.+|+|.|.|.|.|..
T Consensus       200 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          200 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            36766654  346679999999999999999999974

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.57  E-value=5.5e-08  Score=53.87  Aligned_cols=45  Identities=9%  Similarity=0.090  Sum_probs=31.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      +.|+|+|.++...... .....  ....|.|.+++  |+|.|+|.|.+..
T Consensus       138 ~~w~k~g~~~~~~~~~-~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          138 YHLSREGEAHERRLPA-GPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEETTCSSCEEEEC-EEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEEEECCcccCccccc-ccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            6899999877532111 11112  24679999998  9999999999764

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.57  E-value=2.5e-07  Score=52.22  Aligned_cols=48  Identities=10%  Similarity=0.022  Sum_probs=35.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..+. ....+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~  116 (227)
T 1mju_H           66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSA  116 (227)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECS
T ss_pred             CcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcC
Confidence            57766543  35678999999999999999999997432 22345677764

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.57  E-value=5.1e-07  Score=48.66  Aligned_cols=49  Identities=8%  Similarity=0.042  Sum_probs=36.8

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      ..|+.+........|+|.+++.+|+|.|.|.+.+....-.....|.|..
T Consensus        58 ~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~~~~~~~~fg~gt~L~V~~  106 (143)
T 3u6r_L           58 PARFSGSGSGTDFTLTISNLEPEDFAVYYCQQRSDWVTFGGGTKVEIKA  106 (143)
T ss_dssp             CTTEEEEEETTEEEEEECSCCGGGCEEEEEEECSSBCEECCCEEEEEC-
T ss_pred             cCcEeEEccCCEEEEEEccCcccCCEEEEEEEecCCCEECCCEEEEECC
Confidence            3577776666778999999999999999999987653334446677654

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.57  E-value=1.5e-07  Score=53.84  Aligned_cols=48  Identities=17%  Similarity=0.117  Sum_probs=34.7

Q ss_pred             CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEEc
Q psy7044          15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~~   62 (68)
                      .++.+..  ......|.|.+++.+|+|.|.|.|.|..+..    ...+.|.|.+
T Consensus        63 ~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           63 NGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             TTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             CCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            4555532  2346789999999999999999999987622    2345677765

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.57  E-value=4.7e-07  Score=51.47  Aligned_cols=50  Identities=14%  Similarity=0.215  Sum_probs=36.4

Q ss_pred             CCCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCc-------ceeEEEEEEEEcC
Q psy7044          14 EGNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASG-------KDEADVEITVLIL   63 (68)
Q Consensus        14 ~~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g-------~~~~~~~l~V~~~   63 (68)
                      ..|+.+....  +...|.|.+++.+|+|.|.|.+.|...       .....+.|.|...
T Consensus        66 ~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~  124 (242)
T 1hxm_B           66 SGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDK  124 (242)
T ss_dssp             TTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESS
T ss_pred             CCeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEccc
Confidence            3577665433  467899999999999999999998741       1123467888763

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.57  E-value=2.7e-07  Score=53.50  Aligned_cols=48  Identities=13%  Similarity=0.044  Sum_probs=35.1

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc---eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK---DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~---~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..+.   ....+.|.|..
T Consensus        72 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           72 DKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             CcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence            57766543  34678999999999999999999997541   12345677764

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.56  E-value=8.8e-07  Score=46.42  Aligned_cols=52  Identities=13%  Similarity=0.202  Sum_probs=40.1

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .|+.+...  .+...|+|.+++.+|+|.|.|.+.+........+.|.|...|.+
T Consensus        62 ~R~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~~~~~~~~v~L~V~~~~~~  115 (124)
T 2nms_A           62 DRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVT  115 (124)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             CCEEEEEcCcCCEEEEEEeCCCHHHCEEEEEEEEcCCCCccEEEEEEEeCCCcC
Confidence            45665533  34578999999999999999999887666677899999887754

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.56  E-value=6.3e-07  Score=50.18  Aligned_cols=49  Identities=20%  Similarity=0.132  Sum_probs=36.5

Q ss_pred             CCCEEEEEe---CCeEEEEEcCCCCCCCEEEEEEEEcCCcc-----------eeEEEEEEEEc
Q psy7044          14 EGNVEIVNV---PYNTKLSIVDILRKNSGVYRIKAENASGK-----------DEADVEITVLI   62 (68)
Q Consensus        14 ~~~~~~~~~---~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-----------~~~~~~l~V~~   62 (68)
                      ..|+.+...   .+...|.|.+++.+|+|.|.|.+.|..+.           ....+.|.|..
T Consensus        56 ~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~  118 (207)
T 1ypz_E           56 NGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEP  118 (207)
T ss_dssp             ETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEEC
T ss_pred             CCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEcc
Confidence            367777654   45678999999999999999999987531           12346777775

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.55  E-value=3.5e-08  Score=54.65  Aligned_cols=56  Identities=11%  Similarity=0.047  Sum_probs=38.4

Q ss_pred             eEEEeCCEEeccCC--CEEEEE-eCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEG--NVEIVN-VPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~--~~~~~~-~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|+|||.++..+.  ...... .++    .+.|.|......|+|.|+|.|+|+.........
T Consensus       146 v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~~  208 (213)
T 3r06_A          146 VKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVKT  208 (213)
T ss_dssp             EEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEE
T ss_pred             EEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEEe
Confidence            68999999997421  100110 111    246889999999999999999999876554443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.55  E-value=8.3e-09  Score=57.97  Aligned_cols=48  Identities=6%  Similarity=0.053  Sum_probs=26.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .++.+....+...|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|..
T Consensus        82 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  130 (233)
T 3bqu_C           82 SRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKR  130 (233)
T ss_dssp             TTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---C
T ss_pred             ccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeC
Confidence            34443333344589999999999999999999987643 2233455554

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.54  E-value=3e-07  Score=52.37  Aligned_cols=48  Identities=15%  Similarity=0.101  Sum_probs=36.5

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .|+.+....  +...|.|.+++.+|+|.|.|.|.|..+.. ...+.|.|.+
T Consensus        67 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           67 GKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             CcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence            566665433  36679999999999999999999977654 4556677764

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.54  E-value=2.2e-07  Score=47.26  Aligned_cols=45  Identities=18%  Similarity=0.347  Sum_probs=35.4

Q ss_pred             CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044          16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus        16 ~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      |+.+.  .....|.|.+++.+|+|.|.|.+.+.. .....+.|.|.++
T Consensus        65 R~~~~--~~~~sL~I~~v~~~DsG~Y~C~v~~~~-~~~~~~~L~V~dp  109 (110)
T 2ptt_A           65 RVYLE--ENNGALHISNVRKEDKGTYYMRVLRET-ENELKITLEVFDP  109 (110)
T ss_dssp             TEEEC--TTTCCEEESSCCGGGCEEEEEEEESSS-BCCEEEEEEEECC
T ss_pred             cEEEe--CCCccEEECCCCcccCeEEEEEEEcCC-CcEEEEEEEEEcc
Confidence            55442  244579999999999999999999876 4566889998864

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.53  E-value=2e-08  Score=57.01  Aligned_cols=57  Identities=5%  Similarity=-0.079  Sum_probs=39.1

Q ss_pred             eEEEeCCEEe-ccCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQV-RSEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l-~~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+++|..+ ...........++    .+.|.|.+++..|.|.|+|.|.|..+.......|
T Consensus        48 v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v  109 (231)
T 2w59_A           48 VTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSV  109 (231)
T ss_dssp             EEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSSCEEEEE
T ss_pred             EEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCCceEEEE
Confidence            6899999887 4222221111121    2479999999999999999999998765444333

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.53  E-value=1.8e-07  Score=52.98  Aligned_cols=35  Identities=11%  Similarity=0.175  Sum_probs=28.4

Q ss_pred             CCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          14 EGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        14 ~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      ..++.+..  ......|.|.+++.+|+|.|.|.|.|.
T Consensus       192 ~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          192 KGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             SSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            35666654  244678999999999999999999996

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.52  E-value=2.2e-08  Score=56.59  Aligned_cols=61  Identities=5%  Similarity=-0.077  Sum_probs=42.7

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVP---YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+++|..+..  ...+.  ..+   ..+.|.|..+..+| |.|+|.|.|..+.......+.+.++|.
T Consensus       155 v~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~  220 (227)
T 1mju_H          155 LTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI  220 (227)
T ss_dssp             EEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred             EEEecCCCcCCcEECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence            689999987531  11111  111   13579999999988 999999999998877777777766664

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.51  E-value=4.7e-07  Score=52.49  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=30.0

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           66 GRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTY  103 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSS
T ss_pred             CceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCC
Confidence            57766553  3567899999999999999999999876

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.51  E-value=6.2e-07  Score=46.89  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcc------eeEEEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGK------DEADVEITVLIL   63 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~------~~~~~~l~V~~~   63 (68)
                      ...|.|.+++.+|+|.|.|.+.|....      -.....|.|.+.
T Consensus        73 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~fg~GT~L~V~~~  117 (127)
T 2jju_A           73 DFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAK  117 (127)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEECCSSSCEEEEECCCEEEEEEC-
T ss_pred             EEEEEECCCCHHHCEEEEEEEEcCCCCccceEEeCCCeEEEEeec
Confidence            557999999999999999999986431      123467777764

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.50  E-value=5.8e-07  Score=45.96  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=29.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|..
T Consensus        63 ~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   97 (111)
T 1i3g_L           63 DRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSSY   97 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSS
T ss_pred             CcEEEEcCCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            57777666667789999999999999999998863

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.50  E-value=1.7e-06  Score=45.90  Aligned_cols=51  Identities=22%  Similarity=0.318  Sum_probs=38.3

Q ss_pred             CCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCcc----eeEEEEEEEEcCC
Q psy7044          14 EGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASGK----DEADVEITVLILK   64 (68)
Q Consensus        14 ~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~----~~~~~~l~V~~~p   64 (68)
                      .+|+.+..  ......|.|.+++.+|+|.|.|.+.+....    ....+.|.|.+.+
T Consensus        69 ~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~  125 (134)
T 3bik_B           69 DARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERI  125 (134)
T ss_dssp             CTTEEEEECTTSSEEEEEECSCCGGGCEEEEEEEEECSSSCEEEECCCEEEEEECCC
T ss_pred             CCCEEEEecCCCCEEEEEECCCChHHCEEEEEEEEeCCCCceEEEcCCEEEEEeCCC
Confidence            35777653  344668999999999999999999886542    2446788888754

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.50  E-value=4.9e-07  Score=51.93  Aligned_cols=47  Identities=13%  Similarity=-0.026  Sum_probs=33.5

Q ss_pred             CEEEEE-eCCeEEEEEcCCCCCCCEEEEEEEEcCC----cceeEEEEEEEEc
Q psy7044          16 NVEIVN-VPYNTKLSIVDILRKNSGVYRIKAENAS----GKDEADVEITVLI   62 (68)
Q Consensus        16 ~~~~~~-~~~~~~l~I~~~~~~d~G~Y~c~a~n~~----g~~~~~~~l~V~~   62 (68)
                      |+.+.. ..+...|.|.+++.+|+|.|.|.+.|..    +.....+.|.|..
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  141 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLE  141 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEES
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcc
Confidence            554443 2346789999999999999999999753    2333445677765

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.49  E-value=1.9e-07  Score=48.73  Aligned_cols=43  Identities=16%  Similarity=0.298  Sum_probs=35.7

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCCcC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILKEN   66 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p~~   66 (68)
                      ....|.|.+++..|+|.|.|.+.|..+ .....+.|.|.+++..
T Consensus        71 ~~~sL~I~nv~~~DsG~Y~c~v~~~~~~~~~~~~~L~V~~~~~~  114 (121)
T 2edo_A           71 QSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPK  114 (121)
T ss_dssp             TTCCEEESSCCGGGCSEEEEEEEETTTEEEECCEECEEECCSCC
T ss_pred             CCceEEEeCCCHHHCeEEEEEEEcCCCcEEEEEEEEEEECCCCC
Confidence            344799999999999999999998776 5577889999986543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.49  E-value=2.4e-07  Score=51.80  Aligned_cols=47  Identities=6%  Similarity=-0.036  Sum_probs=35.4

Q ss_pred             eEEEeCCEEec----------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVR----------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~----------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      +.|+++|.++.          .+..+.+     .+.|.|..+...|+|.|+|.|.|+.+...
T Consensus       158 v~W~~~g~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          158 VTWSESGQGVTARNFPPSQDASGDLYTT-----SSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             EEESCCSTTCEEEECCCEECSSSSCEEE-----EEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEEECCEECceEEcCceeeCCCCcEEE-----EEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            68999998763          1222222     23699999999999999999999987654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.48  E-value=7.7e-08  Score=56.54  Aligned_cols=55  Identities=5%  Similarity=-0.001  Sum_probs=39.8

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|+|||.++..+...  .... ++    .+.|.|..+...|+|.|+|.|.|..|.....+.
T Consensus        43 v~W~k~g~~l~~~~~~~~~~~~-~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  103 (323)
T 2wqr_A           43 ITWLEDGQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK  103 (323)
T ss_dssp             EEEEETTEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEECCEEcccceecCCcCcc-CCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeee
Confidence            7899999999754321  1222 32    246889888888999999999999987665543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.48  E-value=6e-07  Score=55.26  Aligned_cols=48  Identities=15%  Similarity=0.180  Sum_probs=35.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcc------eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGK------DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~------~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|..|.      ....+.|.|.+
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  122 (475)
T 1iga_A           67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSS  122 (475)
T ss_pred             CceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEecc
Confidence            45655433  34568999999999999999999998862      23456777764

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.48  E-value=2.1e-07  Score=53.04  Aligned_cols=54  Identities=7%  Similarity=-0.047  Sum_probs=37.9

Q ss_pred             eEEEeCCEEeccCCCEE--EE-EeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           2 FDIFCPRSQVRSEGNVE--IV-NVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~--~~-~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      +.|+|||.++..+....  .. ..++    .+.|.|..+..+|+|.|+|.|.|........
T Consensus       184 v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p~~  244 (252)
T 3bkj_L          184 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIV  244 (252)
T ss_dssp             EEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEE
T ss_pred             EEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCCee
Confidence            78999999987430110  00 1111    2469999999999999999999998765333

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.48  E-value=6.6e-07  Score=46.31  Aligned_cols=50  Identities=12%  Similarity=0.036  Sum_probs=37.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p   64 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.+.... -.....|.|.+.|
T Consensus        62 ~R~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~~~fg~gt~L~V~~~~  112 (120)
T 1oaq_L           62 ARFSGSLIGNKAALTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQP  112 (120)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTEEEECCCEEEEECC--
T ss_pred             CceEEecCCCeEEEEECCCChhhCeEEEEEEccCCCcEECCCEEEEEcCCC
Confidence            5777766666778999999999999999999987542 2344577787655

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.47  E-value=7.4e-07  Score=50.09  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=37.3

Q ss_pred             eEEEe-CCEEecc---CCCEEEEEeC---CeEEEEEcCCCC--CCCEEEEEEEEcCCcceeEEE
Q psy7044           2 FDIFC-PRSQVRS---EGNVEIVNVP---YNTKLSIVDILR--KNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus         2 ~~W~k-~g~~l~~---~~~~~~~~~~---~~~~l~I~~~~~--~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      +.|++ ||.++..   ....  ....   ..+.|.|.....  .|.|.|+|.|.|..|......
T Consensus       160 v~W~~~~g~~l~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          160 FSWKYKNNSDISSTRGFPSV--LRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EEEEETTSCBCSCEEECCCE--EETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EEeEccCCCccceeEECCcc--ccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            68999 9988863   0000  0011   134689988876  899999999999999876654

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.47  E-value=1.3e-06  Score=44.94  Aligned_cols=47  Identities=17%  Similarity=0.157  Sum_probs=34.4

Q ss_pred             eEEEeCC--EE----eccCCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCPR--SQ----VRSEGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~g--~~----l~~~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|+|+.  ..    +....|+.+...  .....|.|.+++.+|+|.|.|.+.|.
T Consensus        34 v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   88 (113)
T 1sq2_N           34 TCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   88 (113)
T ss_dssp             EEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEeC
Confidence            6898862  21    223457765432  34678999999999999999999984

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.47  E-value=1.5e-06  Score=44.42  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=29.5

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.|..
T Consensus        65 ~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   99 (113)
T 1dlf_L           65 DRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHV   99 (113)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             CCEEEEccCCEEEEEECCCChHHCEEEEEEEecCC
Confidence            57776656667789999999999999999998763

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.46  E-value=5.6e-07  Score=50.61  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=27.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .++.+...  .....|.|.+++.+|+|.|.|.|.+.
T Consensus       185 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          185 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             ccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            46666543  44678999999999999999999953

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.46  E-value=1.8e-07  Score=53.50  Aligned_cols=39  Identities=15%  Similarity=0.199  Sum_probs=31.3

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCc---ceeEEEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASG---KDEADVEITVLIL   63 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g---~~~~~~~l~V~~~   63 (68)
                      ...|.|.+++.+|+|.|.|.+.|..+   .....+.|.|.+.
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           78 NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             CCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             eEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence            45799999999999999999999887   3445567777764

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.46  E-value=1.5e-06  Score=48.50  Aligned_cols=47  Identities=13%  Similarity=0.123  Sum_probs=34.7

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC--cceeEEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS--GKDEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~--g~~~~~~~l~V~   61 (68)
                      +|+.+...  .+...|.|.+++.+|+|.|.|.+.|..  ......+.|.|.
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H           68 GRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVS  118 (221)
T ss_dssp             TSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred             ccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEe
Confidence            56766543  356689999999999999999999974  233444566665

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.46  E-value=3.4e-07  Score=51.42  Aligned_cols=50  Identities=4%  Similarity=-0.035  Sum_probs=35.4

Q ss_pred             eEEEeCCEEec--cCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVR--SEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~--~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      +.|+++|.++.  ..... . ..++    .+.|.|......|.|.|+|.|.|..|..+
T Consensus       157 v~W~~~~~~~~~~~~~~~-~-~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          157 VTWGKSGKDITTVNFPPA-L-ASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEESCCCSSCEEEECCCE-E-CSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEecCCEecceEecCce-E-CCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            68999997652  11111 1 1111    23599999999999999999999999765

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.45  E-value=7.3e-07  Score=50.84  Aligned_cols=48  Identities=15%  Similarity=0.134  Sum_probs=36.7

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC----CcceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA----SGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~----~g~~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|.    .+.....+.|.|.+
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           68 GKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            56666543  34667999999999999999999998    44445567777775

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.45  E-value=2e-06  Score=44.11  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=28.6

Q ss_pred             CCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          14 EGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        14 ~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .+|+.+..  ..+...|.|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           62 QGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             TTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEEecCCCEEEEEEccCChHHCEEEEEEEeCC
Confidence            36777654  345678999999999999999999984

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.45  E-value=7.9e-07  Score=51.47  Aligned_cols=48  Identities=15%  Similarity=0.102  Sum_probs=34.6

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCc------ceeEEEEEEEEc
Q psy7044          15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASG------KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g------~~~~~~~l~V~~   62 (68)
                      .|+.+... .+...|.|.+++.+|+|.|.|.+.|..|      .....+.|.|..
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  142 (279)
T 2wbj_D           88 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTE  142 (279)
T ss_dssp             SSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEES
T ss_pred             CcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEec
Confidence            56766542 3567899999999999999999999532      112335677765

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.44  E-value=1.4e-06  Score=49.34  Aligned_cols=48  Identities=15%  Similarity=0.090  Sum_probs=33.6

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCCc---c--eeEEEEEEEEc
Q psy7044          15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENASG---K--DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~g---~--~~~~~~l~V~~   62 (68)
                      .|+.+... .+...|.|.+++.+|+|.|.|.+.|..+   .  ....+.|.|..
T Consensus        60 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  113 (238)
T 1bec_A           60 DGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLE  113 (238)
T ss_dssp             TTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEES
T ss_pred             ceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEec
Confidence            45555432 3457899999999999999999999853   1  12334566765

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.43  E-value=9.9e-07  Score=45.23  Aligned_cols=49  Identities=16%  Similarity=0.100  Sum_probs=34.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLIL   63 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~   63 (68)
                      .|+.+....  ....|.|.+++.+|+|.|.|.+.+.... -.....|.|.+.
T Consensus        64 ~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~  115 (116)
T 3bj9_1           64 PRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSTHVFGSGTQLTVLSA  115 (116)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSSCCEECCCEEEEEESC
T ss_pred             CcEEEEecCCCceEEEEECCCChhHCEEEEEEEeCCCCcEECCCEEEEEecC
Confidence            466665433  3458999999999999999999876432 234566777653

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.43  E-value=2.3e-07  Score=47.41  Aligned_cols=62  Identities=15%  Similarity=0.130  Sum_probs=40.3

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~~   63 (68)
                      +.|+|+|..+..  ..............|.|..++..|+|.|+|...|..+  ..+....|.|.+.
T Consensus        39 f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sdpl~L~Vtg~  104 (106)
T 3kgr_A           39 FRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLELLVKEA  104 (106)
T ss_dssp             EEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECC
T ss_pred             EEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEEeeCCCcccCCCCCEEEEEeCC
Confidence            578888864421  1111111112246799999999999999999998754  2355677777764

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.42  E-value=8.6e-07  Score=46.84  Aligned_cols=51  Identities=18%  Similarity=0.129  Sum_probs=37.3

Q ss_pred             eEEEeC--CE----EeccCCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCP--RS----QVRSEGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~--g~----~l~~~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|+  |.    .+....|+.+...  .....|.|.+++.+|+|.|.|.+.|..+..
T Consensus        34 v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~   92 (126)
T 3moq_A           34 TGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVFFAE   92 (126)
T ss_dssp             EEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEEEETT
T ss_pred             EEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEcCCCC
Confidence            579984  32    2334467765433  356789999999999999999999987643

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.41  E-value=2.1e-07  Score=51.79  Aligned_cols=53  Identities=13%  Similarity=0.114  Sum_probs=31.7

Q ss_pred             eEEEeCCEEeccCC-CEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRSEG-NVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|+|+|.++.... .......++    .+.|.|......|+|.|+|.|.|..+....
T Consensus        39 v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~   96 (207)
T 1l6x_A           39 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI   96 (207)
T ss_dssp             EEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE
T ss_pred             EEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcce
Confidence            68999999886421 000111111    123444444444599999999999987533

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.41  E-value=9.9e-07  Score=49.96  Aligned_cols=48  Identities=19%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEE--cCCc----ceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAE--NASG----KDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~--n~~g----~~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.  |..+    .....+.|.|..
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  120 (232)
T 1dn0_B           65 SRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSS  120 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECS
T ss_pred             CeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEcc
Confidence            57776543  346689999999999999999998  4312    122345777765

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.41  E-value=5.2e-08  Score=54.07  Aligned_cols=52  Identities=4%  Similarity=-0.027  Sum_probs=36.0

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVP---YNTKLSIVDILRKNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      +.|+++|.++..  ...+  ...+   ..+.|.|..+..+| |.|+|.|.|..|......
T Consensus       152 v~W~~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          152 VTWNSGSLSSGVHTFPAV--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             EEEGGGTBCTTEEECCCE--EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEEeeCCcccceEEcCCc--cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence            689999986531  1111  1111   13569999998877 999999999999876543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.41  E-value=9.4e-07  Score=50.14  Aligned_cols=35  Identities=9%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             CCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          14 EGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        14 ~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      ..++.+...  .....|.|.+++.+|+|.|.|.|.|.
T Consensus       186 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          186 KSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             TTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             cCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            356666543  34578999999999999999999984

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.40  E-value=1.3e-06  Score=44.71  Aligned_cols=58  Identities=10%  Similarity=0.025  Sum_probs=40.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~~   62 (68)
                      +.|+|+|..+..   -..........|.|..++..|+|.|.|...+..+-  .+....|.|.+
T Consensus        42 f~l~k~g~~~~~---~~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sdpl~L~VtG  101 (102)
T 4esk_A           42 VRLEKDGSTFME---KSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKVIK  101 (102)
T ss_dssp             EEEEETTEEEEE---EECCSSCSEEEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             EEEEECCccccc---cccCCCCcceEEEeCcCCcccCeeEEEEEeCCCccccCcCCEEEEEEe
Confidence            578999876531   11111235678999999999999999999988762  24456676654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.39  E-value=4.2e-08  Score=54.70  Aligned_cols=55  Identities=7%  Similarity=0.004  Sum_probs=35.1

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVPY---NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+|+|.++..  .....  ..+.   .+.|.|.... .|.|.|+|.|.|+.|.......|.
T Consensus       158 v~W~~~g~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i~  217 (219)
T 1c1e_H          158 VTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKIV  217 (219)
T ss_dssp             EEEGGGTBCTTEEECCCEE--SSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEeCCcccceEecCCcc--cCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEecC
Confidence            689999987531  11111  1111   2468995444 466999999999999876665543

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.38  E-value=3.3e-06  Score=44.89  Aligned_cols=51  Identities=10%  Similarity=0.041  Sum_probs=38.9

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEEEcCC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG-KDEADVEITVLILK   64 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V~~~p   64 (68)
                      .+|+.+....+...|+|.+++.+|+|.|.|.+.+... .-.....|.|.+.+
T Consensus        64 ~~Rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~~  115 (137)
T 3bdb_A           64 DSRFSMTVNDQKFDLNIIGAREDDGGEYFCGEVEGIIIKFTSGTRLQFEGSN  115 (137)
T ss_dssp             CTTEEEEESSSBEEEEEESCCSTTCEEEEEEEECSSCEEEEEEEEECCCCCC
T ss_pred             CCcEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCeEEECCCEEEEEECCC
Confidence            3577776555667899999999999999999998643 23556777777654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.37  E-value=2.9e-08  Score=60.37  Aligned_cols=48  Identities=13%  Similarity=0.126  Sum_probs=35.8

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.|.|..+.....+.|.|..
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~  114 (434)
T 1igy_B           65 DKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSS  114 (434)
T ss_dssp             TTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECC
T ss_pred             ccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEcc
Confidence            46655332  2345799999999999999999999766555666777763

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.37  E-value=1.6e-07  Score=55.15  Aligned_cols=56  Identities=7%  Similarity=-0.057  Sum_probs=36.8

Q ss_pred             eEEEeCC-EEeccCCCEEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPR-SQVRSEGNVEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g-~~l~~~~~~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|+|++ ..+...........+    ..+.|.|.+++.+|+|.|+|.|.|..+.......
T Consensus       149 i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~  209 (323)
T 2wqr_A          149 LTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRS  209 (323)
T ss_dssp             EEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEE
T ss_pred             EEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeE
Confidence            6899974 555432222211111    2347999999999999999999999865433333

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=98.37  E-value=1.6e-06  Score=51.90  Aligned_cols=47  Identities=13%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      ++|+|||.++..          ....|.|......|+|.|+|.+.|..|....+..+
T Consensus        38 YqWyKDG~~IsG----------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~V   84 (304)
T 3shs_A           38 YTWTKDDQPHEN----------NTATLTVADATSENAGSYKVTVQDTDTMTSVESEV   84 (304)
T ss_dssp             EEEEETTEECSC----------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCC
T ss_pred             EEEEECCccccC----------CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeE
Confidence            689999999763          12268999999999999999999998866544333

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.36  E-value=2.6e-06  Score=48.71  Aligned_cols=47  Identities=15%  Similarity=0.123  Sum_probs=34.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC----CcceeEEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA----SGKDEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~----~g~~~~~~~l~V~   61 (68)
                      +|+.+...  .+...|.|.+++.+|+|.|.|.+.|.    .+.....+.|.|.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~  118 (253)
T 3liz_H           66 GRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVS  118 (253)
T ss_dssp             TTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEEC
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEe
Confidence            46665543  35677999999999999999999987    3333444567665

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.36  E-value=6.9e-07  Score=50.46  Aligned_cols=52  Identities=10%  Similarity=0.116  Sum_probs=36.5

Q ss_pred             eEEEeCCEEeccCCCEEEEE-------eCC----eEEEEEcCCCCCC-CEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN-------VPY----NTKLSIVDILRKN-SGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~-------~~~----~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~   53 (68)
                      +.|+|||.+|....+.....       .++    .+.|.|.....+| .|.|+|.|.|+.....
T Consensus       159 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          159 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            68999999997432111000       011    1358999998888 9999999999988654

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.35  E-value=1.8e-07  Score=49.19  Aligned_cols=51  Identities=12%  Similarity=0.037  Sum_probs=36.1

Q ss_pred             CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044          15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus        15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +|+.+..  ..+...|.|.+++.+|+|.|.|.+.+..+.......|.|...|+
T Consensus        66 ~Rf~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~~~~~~~~~~~~t~l~v~~~~~  118 (126)
T 2h32_A           66 PRFSGSKDVARNRGYLSISELQPEDEAMYYCAMGARSSEKEEREREWEEEMEP  118 (126)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSCCCCCCTTCC-------
T ss_pred             CCEEEEEeCCCCeEEEEECCCChhHCEEEEEEEEcCCCCcceeEEEeeccCCC
Confidence            4676653  24567899999999999999999999998877777777765443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.35  E-value=5e-07  Score=50.94  Aligned_cols=51  Identities=12%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             eEEEeCCEEeccCCCEE---EEEeCCe----EEEEEcCCCCCC-CEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVE---IVNVPYN----TKLSIVDILRKN-SGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~---~~~~~~~----~~l~I~~~~~~d-~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|||.+|....+..   ....++.    +.|.|......| .|.|+|.|.|+....
T Consensus       156 v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          156 LSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             EEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             EEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence            67999999997432211   1222332    359999999998 779999999998754

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.34  E-value=2.5e-07  Score=53.03  Aligned_cols=51  Identities=16%  Similarity=0.157  Sum_probs=35.7

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|++.++..... ......+    ..+.|.|.+++.+|+|.|.|.|.|..|..
T Consensus        53 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           53 FSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             EEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             EEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            789999977652210 0001011    23579999999999999999999999964

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.34  E-value=2.2e-07  Score=52.08  Aligned_cols=51  Identities=8%  Similarity=0.001  Sum_probs=29.6

Q ss_pred             eEEEeCCEEeccCCCEEE--E-EeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEI--V-NVP----YNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~--~-~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|||.++..+.....  . ..+    ..+.|.|..+..+|+|.|+|.|.|+....
T Consensus       168 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  225 (233)
T 3bqu_C          168 VKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  225 (233)
T ss_dssp             EEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---C
T ss_pred             EEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCCc
Confidence            789999998864301100  0 011    12479999999999999999999987653

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.34  E-value=2.6e-07  Score=52.56  Aligned_cols=57  Identities=12%  Similarity=0.053  Sum_probs=37.2

Q ss_pred             eEEEeCCE-EeccCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRS-QVRSEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~-~l~~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+++|. ++.......+...++    .+.|.|..+.. | |.|+|.|.|..+.......+.+
T Consensus       166 v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          166 IHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            68999987 664221000111222    25799988775 5 9999999999998766666555

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.33  E-value=1.8e-06  Score=45.37  Aligned_cols=58  Identities=10%  Similarity=0.025  Sum_probs=38.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~~   62 (68)
                      +.|+|+|..+..   ...........+.|.+++..|+|.|+|...+..+-  .+....|.|.+
T Consensus        42 f~L~k~g~~~~~---~~~~~~~~~a~f~i~~vt~~daG~Y~C~y~~~~~wS~~Sdpl~L~Vtg  101 (118)
T 4ety_A           42 VRLEKDGSTFME---KSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKVIK  101 (118)
T ss_dssp             EEEEETTEEEEE---EECCSSSSEEEEEECSCCGGGCEEEEEEEEC----CEECCCEEEEEEC
T ss_pred             EEEEECCcCccc---cccCCCCcceEEEeCccCccCCeEEEEEeeCCCccccccCCEEEEEEE
Confidence            578899986541   11111234678999999999999999999987763  24456777765

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=98.32  E-value=1.6e-06  Score=44.82  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=33.6

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCcc--eeEEEEEEEEcC
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASGK--DEADVEITVLIL   63 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~--~~~~~~l~V~~~   63 (68)
                      ....+|.|.+++.+|+|.|.|.+....+.  ....+.|.|.++
T Consensus        69 ~~~~SL~I~nl~~~DsG~Y~c~i~~~~~~~~~~~~~~L~V~~~  111 (111)
T 2pkd_A           69 GPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRR  111 (111)
T ss_dssp             TTTCCEEECSCCGGGCEEEEEEEEESSTTSEEEEEEEEEEECC
T ss_pred             CCCEEEEECCCCHHHCEEEEEEEEeCCCCceEEEEEEEEEEcC
Confidence            34567999999999999999999877763  567888888763

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.31  E-value=4e-06  Score=43.93  Aligned_cols=50  Identities=14%  Similarity=0.033  Sum_probs=38.2

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc---ceeEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG---KDEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g---~~~~~~~l~V~~~p   64 (68)
                      +|+.+........|.|.+++.+|+|.|.|.+.+...   .-.....|.|.+.+
T Consensus        61 ~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~~~~~~~~~~~fG~GT~l~V~~~~  113 (123)
T 3t0v_A           61 DRFSGSKSGTSASLAISGLRSEDEADYYCLSWDDSLNGWVFGGGTKVTVLDAA  113 (123)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEECCCC
T ss_pred             CCEEEEccCCEEEEEECCCCHHHCEEEEEEEEcCCCCceEECCCEEEEEccCC
Confidence            577776666778999999999999999999988653   22345677776654

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.31  E-value=3.1e-06  Score=52.95  Aligned_cols=61  Identities=10%  Similarity=0.085  Sum_probs=41.3

Q ss_pred             eEEEeCCEEeccCCCE--E-EEEeCCe-----EEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNV--E-IVNVPYN-----TKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~-~~~~~~~-----~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.|+|||.++......  . +...++.     +.|.|......|.|.|+|.|.|+....  .....|.|..
T Consensus       435 v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~  505 (512)
T 1zvo_C          435 LMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY  505 (512)
T ss_pred             EEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence            6899999999753211  1 1222332     568888888888999999999998764  3444555544

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.31  E-value=4e-06  Score=43.73  Aligned_cols=61  Identities=15%  Similarity=0.082  Sum_probs=43.0

Q ss_pred             eEEEeCC----EEeccCCCEEEEEeCCe--EEEEEcCCCCCCCEEEEEEEEcCCcceeE-EEEEEEEcC
Q psy7044           2 FDIFCPR----SQVRSEGNVEIVNVPYN--TKLSIVDILRKNSGVYRIKAENASGKDEA-DVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g----~~l~~~~~~~~~~~~~~--~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-~~~l~V~~~   63 (68)
                      ++|-|-+    .+|..... .....++.  -.|.+.++-.+|+|.|+|.|.+..|..+. +..+.|.+.
T Consensus        44 VtWcKln~~~c~~L~~~~q-~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~ieSHsvtI~Vt~~  111 (120)
T 2aw2_A           44 VTWCKLNGTTCVKLEDRQT-SWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDV  111 (120)
T ss_dssp             EEEEEECSSCEEECCSSCE-EEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECG
T ss_pred             eEEEecCCceEEECccccc-cceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcEEeeEEEEEEEec
Confidence            6887754    67764222 33333442  36999999999999999999999997644 566666553

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.31  E-value=2.8e-07  Score=45.52  Aligned_cols=48  Identities=15%  Similarity=0.174  Sum_probs=29.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+|++..+...         ....|.+.+...+++|.|.|.+.|..+.......|
T Consensus        20 i~W~k~~~~i~~~---------~~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~s~LqV   67 (79)
T 1xiw_B           20 ITWVEGTVGTLLS---------DITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQV   67 (79)
T ss_dssp             EEEEEECCCEEEG---------GGTEEEEEEGGGCCEEEEEEC--------CEEEEE
T ss_pred             EEEEECCcccccc---------cCCeEEeccCcCCCCeEEEecCCCCCCcccEEEEE
Confidence            6899998876521         12367888889999999999999999976554443

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.29  E-value=3.5e-07  Score=51.85  Aligned_cols=51  Identities=12%  Similarity=0.015  Sum_probs=36.9

Q ss_pred             eEEEeCCEEeccCCCEE---EEE--------eC-C----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVE---IVN--------VP-Y----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~---~~~--------~~-~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|||.+|..+....   ...        .+ +    .+.|.|......|.|.|+|.|.|.....
T Consensus       152 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          152 IRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             EEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             EEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            78999999997543211   111        12 2    2568899888889999999999999864

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.29  E-value=2.3e-06  Score=48.41  Aligned_cols=47  Identities=13%  Similarity=0.186  Sum_probs=33.3

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC--Cc--ceeEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA--SG--KDEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~--~g--~~~~~~~l~V~   61 (68)
                      .|+.+....  +...|.|.+++.+|+|.|.|.+.|.  ..  .....+.|.|.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~  118 (230)
T 1ypz_F           66 KKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVI  118 (230)
T ss_dssp             SEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEe
Confidence            556655322  5678999999999999999999985  11  12234577776

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.29  E-value=4.4e-07  Score=51.93  Aligned_cols=54  Identities=4%  Similarity=-0.016  Sum_probs=39.2

Q ss_pred             eEEEeCCEEecc--------CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRS--------EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~--------~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+++|..+..        ...+.+     .+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus       158 v~W~~~~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          158 VTWNSGSLSSGVHTFPAVLQSDLYTL-----SSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             EEEGGGTBCTTEEECCCEEETTEEEE-----EEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEeCCeecceEeCCccccCCeEEE-----EEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            689999974310        111111     2579999999999 99999999999987777666544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.28  E-value=3.2e-06  Score=48.58  Aligned_cols=34  Identities=15%  Similarity=0.273  Sum_probs=27.4

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .++.+...  .....|.|.+++.+|+|.|.|.|.|.
T Consensus       219 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          219 GRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            56666543  23578999999999999999999985

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=97.61  E-value=9.6e-08  Score=48.87  Aligned_cols=35  Identities=26%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             CCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+..  ......|.|.+++.+|+|.|.|.+.|..
T Consensus        58 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   94 (110)
T 1u3h_A           58 GRFTIFFNKREKKLSLHIADSQPGDSATYFCAASANS   94 (110)
Confidence            4555543  2334689999999999999999999863

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=98.28  E-value=4.5e-06  Score=43.43  Aligned_cols=51  Identities=14%  Similarity=0.063  Sum_probs=34.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC--c--ceeEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS--G--KDEADVEITVLILKE   65 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~--g--~~~~~~~l~V~~~p~   65 (68)
                      +|+.+...  .+...|.|.+++.+|+|.|.|.+.+..  +  .-.....|.|...|+
T Consensus        68 ~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~~~~~fg~GT~L~V~~~~~  124 (124)
T 1dlf_H           68 GRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIYYHYPWFAYWGQGTLVTVSAEPR  124 (124)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEBTTBSSCCCCCCCEEEEEC----
T ss_pred             CcEEEEEcCCCCEEEEEECCCCHHHCEEEEEEEEeCCCcccceECCCEEEEEecCCC
Confidence            46776654  456789999999999999999998751  1  123445777776663

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.28  E-value=4.9e-06  Score=47.48  Aligned_cols=48  Identities=10%  Similarity=0.074  Sum_probs=32.5

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCCCEEEEEEEEcCC---cceeEEEEEEEEc
Q psy7044          15 GNVEIVNV-PYNTKLSIVDILRKNSGVYRIKAENAS---GKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~-~~~~~l~I~~~~~~d~G~Y~c~a~n~~---g~~~~~~~l~V~~   62 (68)
                      .|+.+... .+...|.|.+++.+|+|.|.|.+.|..   ......+.|.|..
T Consensus        64 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  115 (252)
T 1oga_E           64 EGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTE  115 (252)
T ss_dssp             TTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             CcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEec
Confidence            46655421 234679999999999999999999972   1222334566654

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.27  E-value=5.7e-06  Score=42.17  Aligned_cols=36  Identities=11%  Similarity=0.176  Sum_probs=29.8

Q ss_pred             CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          14 EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        14 ~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .+|+.+....+...|.|.+++.+|+|.|.|.+.|..
T Consensus        64 ~~R~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~   99 (111)
T 2qhl_A           64 DSRFSMTVNDQKFDLNIIGTREDDGGEYFCGEVEGN   99 (111)
T ss_dssp             CTTEEEEESSSBEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCcEEEEEcCCeEEEEECCCChhHCEEEEEEEccCC
Confidence            357777655566789999999999999999999853

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.27  E-value=1.9e-06  Score=54.04  Aligned_cols=51  Identities=4%  Similarity=0.010  Sum_probs=36.4

Q ss_pred             eEEEeCCEEeccC-CCEEEEEe------CC----eEEEEEcCCC-CCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSE-GNVEIVNV------PY----NTKLSIVDIL-RKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~-~~~~~~~~------~~----~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|++||.+|... .++.+...      .+    .+.|.|.+++ .++.|.|+|.|+|..+..
T Consensus       505 i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          505 LSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             EEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             EEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence            7899999999743 34433211      11    3579999998 555899999999997543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.27  E-value=3.1e-07  Score=51.11  Aligned_cols=51  Identities=8%  Similarity=0.057  Sum_probs=34.3

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|||.++....... ....++    .+.|.|......|.|.|+|.|.|.....
T Consensus       143 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~~  198 (207)
T 2vol_A          143 VEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHN  198 (207)
T ss_dssp             EEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSGG
T ss_pred             EEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCCC
Confidence            78999999986321111 112222    2347777777778999999999998754

>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand swapping; 2.00A {Homo sapiens} PDB: 3i85_A

Probab=98.27  E-value=2.6e-06  Score=43.59  Aligned_cols=38  Identities=8%  Similarity=-0.011  Sum_probs=27.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      ..|+|||+.|+...     .....+.+.|.  ...|+|.|.|+..
T Consensus        41 ~~W~kng~~L~~~~-----~~~~~t~y~Id--~~~dSGeY~Cvf~   78 (98)
T 3i84_A           41 HRWLKGGVVLKEDA-----LPGQKTEFKVD--SDDQWGEYSCVFL   78 (98)
T ss_dssp             EEEEETTEEEEEEC-----CCCSEEEEEEC--GGGCCEEEEEEEE
T ss_pred             CEEeECCEECcccc-----CCCCccEEEEe--ccccCEeEEEEEC
Confidence            37999999997431     12234567775  6789999999964

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.26  E-value=1.6e-07  Score=57.45  Aligned_cols=57  Identities=4%  Similarity=-0.026  Sum_probs=37.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|+|+|.++.....-.....++    .+.|.|.++..+| |.|+|.|.|..+.......|.
T Consensus       166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~  226 (457)
T 1hzh_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAE  226 (457)
T ss_dssp             EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEec
Confidence            68999996543110001111111    2479999999999 999999999988766555444

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.26  E-value=1.7e-06  Score=44.51  Aligned_cols=25  Identities=12%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ...|.|.+++.+|+|.|.|.+.|..
T Consensus        77 ~~~L~I~~v~~~DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           77 DFSIRISNVTPEDAGTYYCVKFQKG  101 (120)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEECC
T ss_pred             eEEEEECCCCHHHCEEEEEEEEcCC
Confidence            4579999999999999999999875

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.25  E-value=2.4e-06  Score=43.81  Aligned_cols=43  Identities=21%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEcCCcC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLILKEN   66 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~~p~~   66 (68)
                      +...|.|.+++.+|+|.|.|.+.....  .....+.|.|...|.+
T Consensus        71 ~~~sL~I~~v~~~Dsg~Y~C~v~~~~~~~~~~~~v~L~V~~~~~~  115 (116)
T 3bia_X           71 GEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALVP  115 (116)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECSSSSCCEEEEEEEEEECC---
T ss_pred             CEEEEEEccCChhHCEEEEEEEEcCCcccceEEEEEEEEecCCCC
Confidence            345799999999999999999986432  3356788888776643

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.25  E-value=6.9e-07  Score=51.02  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=29.6

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCc-----ceeEEEEEEEEcCCcC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASG-----KDEADVEITVLILKEN   66 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g-----~~~~~~~l~V~~~p~~   66 (68)
                      ....|.|.+++.+|+|.|.|.|.+..+     .-.....|.|.+.+..
T Consensus       207 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg~GT~l~v~~~~~~  254 (259)
T 3omz_A          207 KSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTVEPRSQH  254 (259)
T ss_dssp             TBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEECCCEEEEEEC----
T ss_pred             CEEEEEECCCChhHCEEEEEEEeCccCCCCceEECCCCEEEEeeCccc
Confidence            345799999999999999999986432     2234567778776543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.24  E-value=1.9e-06  Score=49.68  Aligned_cols=34  Identities=6%  Similarity=0.051  Sum_probs=27.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .++.+...  .....|.|.+++.+|+|.|.|.|.|.
T Consensus       204 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          204 NKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            45655432  34678999999999999999999996

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.23  E-value=8.2e-07  Score=49.49  Aligned_cols=54  Identities=6%  Similarity=-0.068  Sum_probs=35.7

Q ss_pred             eEEEeCCEEec--cCCCEEEEE--eCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVR--SEGNVEIVN--VPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~--~~~~~~~~~--~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|++++.++.  ...... ..  ....+.|.|.++..+| |.|+|.|.|..|..+.++.
T Consensus       159 v~W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          159 VKWNYGALSSGVRTVSSVL-QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             EEEGGGTCCTTEEECCCEE-ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EEEecCCcccceEEcCCcc-cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            68999987411  011111 00  0013579999998867 9999999999998776654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.23  E-value=1e-06  Score=51.43  Aligned_cols=48  Identities=15%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC-cc----eeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS-GK----DEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~-g~----~~~~~~l~V~~   62 (68)
                      .|+.+...  .+...|.|.+++.+|+|.|.|.+.|.. |.    ....+.|.|..
T Consensus        88 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~  142 (291)
T 2gki_A           88 GKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSS  142 (291)
T ss_dssp             TTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC
T ss_pred             CCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEec
Confidence            45555432  346789999999999999999999985 21    11234666665

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.23  E-value=1.4e-06  Score=49.76  Aligned_cols=46  Identities=11%  Similarity=-0.052  Sum_probs=31.5

Q ss_pred             CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc------ceeEEEEEEEEc
Q psy7044          16 NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG------KDEADVEITVLI   62 (68)
Q Consensus        16 ~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g------~~~~~~~l~V~~   62 (68)
                      |+.+....... |.|.+++.+|+|.|.|.+.|..+      .....+.|.|..
T Consensus        65 R~~~~~~~~~~-L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~  116 (253)
T 3to4_D           65 DYLATRVTDTE-LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLE  116 (253)
T ss_dssp             EEEEECCSSSC-CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEES
T ss_pred             cEEEEeCCCCe-EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEec
Confidence            44444333333 99999999999999999998765      223344666664

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.22  E-value=1.3e-06  Score=50.79  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=34.7

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC---------CcceeEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA---------SGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~---------~g~~~~~~~l~V~~   62 (68)
                      .|+.+...  .....|.|.+++.+|+|.|.|.+.|.         .......+.|.|..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~  124 (280)
T 3fku_X           66 GRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSS  124 (280)
T ss_dssp             TTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcC
Confidence            46666532  34578999999999999999999997         22334455666665

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.22  E-value=7.3e-07  Score=52.84  Aligned_cols=49  Identities=6%  Similarity=0.045  Sum_probs=35.1

Q ss_pred             CeEEEeCCEEecc---------CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           1 MFDIFCPRSQVRS---------EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         1 ~~~W~k~g~~l~~---------~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      .+.|+|+|.++..         +..+.+     .+.|.|.+++.+| |.|+|.|.|..|.....
T Consensus       153 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~  210 (344)
T 1za6_B          153 TVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  210 (344)
T ss_dssp             CEEETTTTBCTTEEECCCEECTTSCEEE-----EEEEEEETTHHHH-BCEEEEEEEGGGTEEEE
T ss_pred             EEEEecCCccCceeECCCeECCCCCEEE-----EEEEEEcHHHcCC-CcEEEEEEeCCCCccce
Confidence            3789999976421         112211     2479999999888 99999999999975433

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.21  E-value=2.6e-07  Score=51.38  Aligned_cols=51  Identities=6%  Similarity=-0.001  Sum_probs=33.5

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|+|||.++........ ...++    .+.|.|......|.|.|+|.|.|.....
T Consensus       143 v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~  198 (207)
T 1l6x_A          143 VEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN  198 (207)
T ss_dssp             EEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred             EEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcCC
Confidence            789999999863211111 12222    1346676666678999999999998754

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.19  E-value=7.6e-06  Score=43.52  Aligned_cols=50  Identities=12%  Similarity=-0.004  Sum_probs=35.9

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-eeEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-DEADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-~~~~~~l~V~~~p   64 (68)
                      .|+.+........|.|.+++.+|+|.|.|.+.+.... -.....|.|.+.+
T Consensus        67 ~Rf~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~fg~GT~L~V~~~~  117 (135)
T 1p4b_L           67 ARFSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGGG  117 (135)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEECCCEEEEEC---
T ss_pred             CCEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCCEECCCEEEEEEcCC
Confidence            5777766666778999999999999999999876431 1334567776543

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.18  E-value=1.2e-06  Score=53.86  Aligned_cols=35  Identities=9%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEIT   59 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      .+.|.|.+++..|+|.|+|.|.|..|.......|.
T Consensus       308 ~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~  342 (475)
T 1iga_A          308 SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLS  342 (475)
T ss_pred             EEEEEEchHHhccCCcEEEEEEcCCCCCceEEEee
Confidence            35799999999999999999999999875555553

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.18  E-value=2.9e-06  Score=47.84  Aligned_cols=52  Identities=10%  Similarity=0.116  Sum_probs=36.0

Q ss_pred             eEEEeCCEEeccCCCEEEEE-------eCC----eEEEEEcCCCCCC-CEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSEGNVEIVN-------VPY----NTKLSIVDILRKN-SGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~-------~~~----~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~   53 (68)
                      +.|+|||.+|..+.+.....       .++    .+.|.|.....+| .|.|+|.|.|......
T Consensus       158 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          158 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             EEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            68999999997432211000       111    2458999888888 9999999999877543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.18  E-value=6.5e-07  Score=50.41  Aligned_cols=56  Identities=4%  Similarity=0.023  Sum_probs=36.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP---YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      +.|+++|.++.......+...+   ..+.|.|..+..+| |.|+|.|.|..|.......+
T Consensus       164 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          164 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             EEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            6899998764211111111111   13569999988866 99999999999987665543

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.17  E-value=9.2e-06  Score=41.62  Aligned_cols=36  Identities=14%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +|+.+....+...|.|.+++.+|+|.|.|.+.+...
T Consensus        65 ~R~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~  100 (115)
T 2otu_A           65 DRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIK  100 (115)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEECCT
T ss_pred             CCEEEEccCCEEEEEECCCChhHCEEEEEEEecCCC
Confidence            577776666677899999999999999999987643

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.15  E-value=2.3e-06  Score=49.07  Aligned_cols=53  Identities=9%  Similarity=0.098  Sum_probs=35.9

Q ss_pred             eEEEeCCEEeccCCCEEE---E----EeCC----eEEEEEcCCCCCC-CEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRSEGNVEI---V----NVPY----NTKLSIVDILRKN-SGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~---~----~~~~----~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|+|||.++..+.....   .    ..++    .+.|.|.....+| .|.|+|.|.|+......
T Consensus       183 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~~  247 (270)
T 3qib_D          183 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEND  247 (270)
T ss_dssp             EEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTTS
T ss_pred             EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCcc
Confidence            689999999974221100   0    0011    2468898888888 99999999999885543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	68
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	9e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-06
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	6e-05
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	6e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	3e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	8e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.001
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.001
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.002
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.003

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 9e-07
 Identities = 10/51 (19%), Positives = 26/51 (50%)

Query: 11  VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
             +EG V +      +  ++    +++ GVY +  +N  G+D+ ++ + V+
Sbjct: 79  CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 5  FCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
             R Q++   ++++ N    +KL+I+   +++ G Y +  EN  G  +A V +TV+
Sbjct: 35 MKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 91

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.7 bits (84), Expect = 2e-05
 Identities = 8/37 (21%), Positives = 15/37 (40%)

Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           ++ L I  +   + G Y  +A N  G    +  + V
Sbjct: 52 TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 4e-05
 Identities = 8/41 (19%), Positives = 15/41 (36%)

Query: 21 NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
              +  L +      N+G Y + A N  G+  A +    +
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 6e-05
 Identities = 9/43 (20%), Positives = 23/43 (53%)

Query: 19 IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
           +    +++L+I ++ + +   Y   AEN +G+ +A + + V 
Sbjct: 56 HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 98

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 6e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%)

Query: 13  SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
            +             L I ++  +++G Y   A N+ G       +TVL
Sbjct: 61  LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL 61
          +  L +  ++  + G Y    EN  G       + V+
Sbjct: 61 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 3e-04
 Identities = 10/60 (16%), Positives = 22/60 (36%)

Query: 1   MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           +         ++   + +  +  Y  +L I D     +G YR +       D ++  +TV
Sbjct: 47  VDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 3e-04
 Identities = 9/61 (14%), Positives = 15/61 (24%)

Query: 1  MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          + +    R                   L        N+G Y + A+N  G     +    
Sbjct: 37 LHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96

Query: 61 L 61
          L
Sbjct: 97 L 97

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 32.9 bits (74), Expect = 5e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
             +L    ++ ++SG+Y+  AEN  G   A  E+TV
Sbjct: 51 SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 5e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 5   FCPRSQVRSEGNVEIVNVPYNTKLSIVDILRK-NSGVYRIKAENASGKDEADVEITV 60
                   SE    + +    ++L I ++  + + G YR    ++ G D+A + + V
Sbjct: 44  EDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 32.6 bits (73), Expect = 8e-04
 Identities = 10/60 (16%), Positives = 23/60 (38%)

Query: 1  MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          +        +++            +  L+I  +   + G Y ++A+N+ G  E  V + V
Sbjct: 32 VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 32.5 bits (73), Expect = 9e-04
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 28 LSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
          L I ++  ++ G Y  +AEN  G+D     I +
Sbjct: 57 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (72), Expect = 0.001
 Identities = 8/49 (16%), Positives = 18/49 (36%)

Query: 12  RSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
           + +   E  +  Y  ++ I+      +G YR +       D    ++ V
Sbjct: 54  QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.4 bits (72), Expect = 0.001
 Identities = 8/63 (12%), Positives = 21/63 (33%)

Query: 1   MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
                      +            ++ ++   + RK++G Y        G++  +V I +
Sbjct: 40  GSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

Query: 61  LIL 63
            +L
Sbjct: 100 TVL 102

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 31.8 bits (71), Expect = 0.001
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 32 DILRKNSGVYRIKAENASGKDEADVEITV 60
           +   + G Y +  EN+ GK EA+  +T+
Sbjct: 61 SVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 31.9 bits (71), Expect = 0.002
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 25  NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
              L I ++   + G Y     + S ++EA VE+ V
Sbjct: 80  KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 31.4 bits (70), Expect = 0.002
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 32 DILRKNSGVYRIKAENASGKDEADVEITV 60
          ++   +   Y  KA N+ G+     E+ V
Sbjct: 71 EVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (69), Expect = 0.003
 Identities = 8/63 (12%), Positives = 22/63 (34%)

Query: 1   MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV 60
                      +   + E       T ++   + R+++G Y        G    +V++ +
Sbjct: 43  GDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

Query: 61  LIL 63
           ++L
Sbjct: 103 IVL 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	68
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.81
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.8
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.78
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.78
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.77
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.76
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.7
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.68
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.65
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.63
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.62
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.62
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.61
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.6
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.58
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.58
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.58
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.56
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.55
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d2avga1	110	Cardiac myosin binding protein C, different domain	99.54
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.54
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.52
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.49
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.48
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.47
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.47
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.47
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.44
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.44
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.42
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.42
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.41
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.4
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.4
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.4
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.38
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.37
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.35
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.33
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.29
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.26
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.22
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.18
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.14
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.14
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.03
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.02
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.99
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.99
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.86
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.66
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.45
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.38
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.32
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.22
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.17
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.15
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.09
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.08
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	98.03
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.95
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.88
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.87
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.82
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.81
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.81
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.75
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.73
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.7
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.68
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.66
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.61
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.59
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.57
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.55
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.53
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.53
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.51
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.5
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.49
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.49
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.48
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.48
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.45
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.45
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.44
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.44
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.43
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.43
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.39
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.37
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.37
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.37
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.34
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.34
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.34
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.33
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.31
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.3
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.3
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.3
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.3
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.29
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.27
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.27
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.27
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.27
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.26
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.24
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.24
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.23
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.2
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.18
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.17
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.14
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.12
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.12
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.11
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.11
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.11
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.06
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.05
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.05
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.04
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.04
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.03
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.02
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.01
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.0
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.0
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.0
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.0
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.99
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.95
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.95
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.94
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.92
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.9
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.87
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.83
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.81
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.8
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	96.78
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.76
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.73
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.67
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.56
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.46
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.41
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.36
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.33
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.3
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.3
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.29
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.27
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.26
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.23
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.22
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.2
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.15
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.07
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.01
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.94
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	95.92
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	95.81
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	95.81
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	95.81
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.66
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	95.55
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	95.41
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	95.4
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.38
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	95.36
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.14
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	95.12
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	95.12
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.04
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	95.02
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	95.0
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	94.99
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	94.99
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	94.8
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	94.77
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	94.44
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	94.4
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.14
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	94.13
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	94.09
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.97
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	93.96
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	93.91
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	93.71
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.66
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	93.65
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	93.62
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	93.6
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	93.55
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	93.34
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.33
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	93.24
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	93.23
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	93.21
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	92.81
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	92.71
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	92.64
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	92.64
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	92.52
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	92.38
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.28
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	92.21
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	92.19
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	92.18
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	91.93
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	91.74
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	91.7
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	91.68
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	91.64
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	91.58
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	91.57
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	91.5
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.44
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	91.4
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	91.33
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	91.28
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	91.23
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	91.17
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	91.05
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.05
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	90.93
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	90.68
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	90.61
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	90.56
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	90.43
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	90.32
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	90.31
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	90.07
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	89.81
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	89.67
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	89.52
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.91
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	88.9
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	88.82
d2d9qb1	94	Granulocyte colony-stimulating factor (GC-SF) rece	88.76
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	88.44
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.44
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.31
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	88.11
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	88.0
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	87.58
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	87.19
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	86.06
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	85.95
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	83.99
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	83.2
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	83.01
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	82.77
d1wgoa_	123	VPS10 domain-containing receptor SorCS2 {Human (Ho	81.19
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	80.31

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.7e-21  Score=98.33  Aligned_cols=66  Identities=23%  Similarity=0.335  Sum_probs=62.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|||.+|..+.++++...++.+.|.|.+++..|+|.|+|.|.|..|.+++++.|.|.++|++.
T Consensus        32 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          32 CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             EEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSCC
T ss_pred             EEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecCCCc
Confidence            789999999998899999988889999999999999999999999999999999999999998764

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.9e-20  Score=93.15  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=57.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC----CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP----YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN   68 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~----~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~~   68 (68)
                      +.|+|||++|..+.++.+....    ..+.|.|.+++++|+|.|+|.|.|.+|.+++++.|.|.++|.+++
T Consensus        34 v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~P~~  104 (105)
T d1wwca_          34 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVD  104 (105)
T ss_dssp             EEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCCCCSC
T ss_pred             EEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCCCCCC
Confidence            7899999999877776554322    235799999999999999999999999999999999999999874

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=4.2e-20  Score=93.21  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|||.+|..+.++.+....+.+.|.|.+++.+|+|.|+|.|.|..|.+.+.+.|.|.+.|.|
T Consensus        33 v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~~P   97 (97)
T d1koaa1          33 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP   97 (97)
T ss_dssp             EEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEECSCCC
T ss_pred             EEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEeecCCC
Confidence            78999999999888888877778889999999999999999999999999999999999987764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.9e-19  Score=91.18  Aligned_cols=64  Identities=19%  Similarity=0.228  Sum_probs=55.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-----CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-----PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-----~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~   65 (68)
                      +.|+|||++|..+.+..+...     ...+.|.|.++++.|+|.|+|.|+|.+|.+++++.|.|.++|+
T Consensus        33 i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~  101 (103)
T d1wwbx_          33 LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             EEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCCC
Confidence            789999999997776654322     1246799999999999999999999999999999999999997

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.78  E-value=2.9e-18  Score=86.45  Aligned_cols=62  Identities=15%  Similarity=0.131  Sum_probs=54.9

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      ++|+|||.+|..+.++.+ ...++.+.|.|.+++..|+|.|+|.|.|..|.+.+.+.|.|..+
T Consensus        36 v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~~k   98 (98)
T d1g1ca_          36 CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK   98 (98)
T ss_dssp             EEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEEEC
Confidence            789999999998777654 44567889999999999999999999999999999999999764

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=88.80  Aligned_cols=66  Identities=14%  Similarity=0.086  Sum_probs=56.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC-------CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP-------YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENI   67 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~-------~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~   67 (68)
                      +.|+|||++|..+.++......       ..+.|.|.++++.|+|.|+|.|.|.+|.+++.+.|.|.++|-..
T Consensus        32 v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P~~~  104 (107)
T d1he7a_          32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEF  104 (107)
T ss_dssp             EEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTTSC
T ss_pred             EEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCCCCc
Confidence            6899999999877766554322       23679999999999999999999999999999999999999554

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.76  E-value=5.4e-18  Score=85.96  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|||.+|..+.++.+.... +.+.|.|.+++..|+|.|+|.|.|.+|..++++.|.|..
T Consensus        40 v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          40 VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEEEE
Confidence            6899999999988888886654 478899999999999999999999999999999999863

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=7.7e-19  Score=87.65  Aligned_cols=61  Identities=18%  Similarity=0.379  Sum_probs=56.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|++||.+|..+.++.+......+.|.|.+++..|+|.|+|.|.|..|..++.+.|.|.
T Consensus        30 ~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          30 TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEECC
T ss_pred             eEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEEE
Confidence            4789999999998888888888889999999999999999999999999999999999875

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=1.9e-18  Score=86.38  Aligned_cols=60  Identities=23%  Similarity=0.227  Sum_probs=56.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|||.++..+.++.+...++.+.|.|.+++++|+|.|+|.|.|..|.+++.+.|.|.
T Consensus        34 v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          34 ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEEC
Confidence            689999999998888888888889999999999999999999999999999999999873

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=6.2e-17  Score=80.49  Aligned_cols=56  Identities=25%  Similarity=0.372  Sum_probs=50.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|||.+|..+.++.+..    +.|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus        33 v~W~k~g~~i~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          33 VRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEEETTEECCCCSSEEEET----TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeeccccccceeeeee----eeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            78999999999888876642    369999999999999999999999999999999885

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=4.6e-17  Score=82.12  Aligned_cols=62  Identities=16%  Similarity=0.257  Sum_probs=51.1

Q ss_pred             eEEEeCCEEeccCCC--EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGN--VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~--~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|++||.+|.....  .........+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.++
T Consensus        37 i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~K  100 (100)
T d1qz1a3          37 MSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK  100 (100)
T ss_dssp             EEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEEEC
Confidence            789999999975432  22233455678999999999999999999999999999999999875

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.69  E-value=1.4e-17  Score=83.90  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|||.+|....++. .....+.+.|.|.+++.+|+|.|+|.|.|..|..++++.|.|+
T Consensus        37 i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Vl   97 (97)
T d3dara1          37 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV   97 (97)
T ss_dssp             EEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEEC
Confidence            78999999998654332 2333445689999999999999999999999999999999884

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=82.47  Aligned_cols=48  Identities=19%  Similarity=0.454  Sum_probs=43.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .++.+....+.+.|.|.++.++|+|.|+|.|.|.+|.+++.+.|.|.|
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence            356777788889999999999999999999999999999999999975

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=5.8e-16  Score=76.84  Aligned_cols=55  Identities=16%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+|||.+|.. .++.+.  ++  .|.|.++++.|+|.|+|.|.|..|.....+.|.|
T Consensus        34 ~v~W~~~~~~i~~-~~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          34 NVVWSHNAKPLSG-GRATVT--DS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             CCEEEETTEECCS-SSEEEE--TT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCccCcc-ccEEEe--ee--eEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            3789999999974 555543  22  5999999999999999999999999999998887

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.4e-16  Score=78.97  Aligned_cols=62  Identities=13%  Similarity=0.252  Sum_probs=53.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~V~~~p~   65 (68)
                      +.|+|+|++|..+.+..+.  ...+.|.|.++++.|+|.|+|.|.|..|... ..+.|.|..+|.
T Consensus        34 v~W~~~~~~l~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~Ps   96 (96)
T d1l6za2          34 IQWLFNSQSLQLTERMTLS--QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPS   96 (96)
T ss_dssp             EEEEETTEECCCCTTEEEE--TTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSCC
T ss_pred             EEEEEeeeecccccceecc--CCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCCC
Confidence            6899999999988887764  3445799999999999999999999999774 568999998884

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1e-15  Score=75.81  Aligned_cols=62  Identities=18%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCC--eEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPY--NTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~--~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      .+.|+|||.+|....+..+.....  .+.|.|.++++.|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus        27 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~G   91 (91)
T d1rhfa1          27 DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG   91 (91)
T ss_dssp             CEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEEC
T ss_pred             eEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEEC
Confidence            478999999998776666655444  4579999999999999999999999976 5578888753

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.5e-15  Score=74.55  Aligned_cols=59  Identities=10%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             CeEEEeCCEEeccCC--CEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           1 MFDIFCPRSQVRSEG--NVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      .+.|+|||.++..+.  ++.+...++.+.|.|.+++.+|+|.|+|.|.|    ..+++.|.|.++
T Consensus        30 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~a~l~V~~k   90 (90)
T d1x44a1          30 NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLK   90 (90)
T ss_dssp             CCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEECC
T ss_pred             eEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----ceEEEEEEEEEC
Confidence            368999999997554  47777778889999999999999999999977    456677877653

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.62  E-value=5.1e-16  Score=77.99  Aligned_cols=61  Identities=21%  Similarity=0.340  Sum_probs=48.4

Q ss_pred             CeEEEeCCEEeccCCC--EEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGN--VEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~--~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~V~   61 (68)
                      .+.|+|||.++.....  +........+.|.|.+++++|+|.|+|.|.|.+|... .++.|.|+
T Consensus        34 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          34 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             CCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            3789999999975443  3333334456899999999999999999999999865 57888885

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.61  E-value=6.1e-17  Score=80.55  Aligned_cols=58  Identities=14%  Similarity=0.057  Sum_probs=50.2

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .+.|+|||.+|..++++.+...++.+.|.|.+++.+|+|.|+|.|.|..    +++.|.|.+
T Consensus        31 ~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~sa~l~V~e   88 (89)
T d1tiua_          31 HGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK----SAANLKVKE   88 (89)
T ss_dssp             CCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB----CCEEEEEEC
T ss_pred             EEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE----EEEEEEEEE
Confidence            3689999999998999999988889999999999999999999987754    456676654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=75.48  Aligned_cols=58  Identities=9%  Similarity=0.103  Sum_probs=48.0

Q ss_pred             CeEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .+.|+|||.+|..+ .++.+...++.+.|.|.+++..|+|.|+|.|.|    ..+++.|.|.+
T Consensus        36 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n----~~~s~~l~V~E   94 (94)
T d1pd6a_          36 EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFVKE   94 (94)
T ss_dssp             CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT----EEECCEEEEEC
T ss_pred             eEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee----EEEEEEEEEEC
Confidence            37899999999754 567788888889999999999999999999977    45566777754

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.7e-15  Score=74.76  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEEcCCc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVLILKE   65 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~~~p~   65 (68)
                      .+.|+|||++|..+.+.... .++  .|.|.+++.+|+|.|+|.|.|..|..    ...+.|.|.+.+.
T Consensus        36 ~i~W~kdg~~l~~~~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~vt~~i~~~v~~~~~  101 (103)
T d1iray2          36 KLQWYKDCKPLLLDNIHFSG-VKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK  101 (103)
T ss_dssp             CCEEEETTEECCCCSSSEEE-ETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCC
T ss_pred             EEEEEECCccccCCCcEEEe-cCC--EEEEcccccccCcEEEEEEEECcCCEEEEEEEEEEEEECCCCC
Confidence            37899999999865443222 232  69999999999999999999988754    4456666766544

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-14  Score=73.24  Aligned_cols=59  Identities=19%  Similarity=0.299  Sum_probs=49.2

Q ss_pred             eEEEeCCEEe----c--cCCCEEEEEeCCeEEEEEcCCC-CCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQV----R--SEGNVEIVNVPYNTKLSIVDIL-RKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l----~--~~~~~~~~~~~~~~~l~I~~~~-~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|++..+    .  ...++.+......+.|.|.+++ .+|+|.|+|.|.|.+|.+++.+.|.|
T Consensus        35 i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          35 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            6899976322    2  2356788888889999999998 47999999999999999999999987

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-16  Score=79.73  Aligned_cols=61  Identities=18%  Similarity=0.095  Sum_probs=48.4

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|+|+|.++..  ..+.++....  ..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++.
T Consensus        35 i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~~~   97 (101)
T d1iray1          35 ITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENE   97 (101)
T ss_dssp             EEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEeCC
Confidence            789999976542  2222233332  379999999999999999999999999999999999863

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=4.3e-15  Score=73.93  Aligned_cols=59  Identities=17%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|+|.++....+..+....+ +.|.|.++++.|+|.|+|.|.|..|.......|.|.
T Consensus        33 v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          33 IIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI   91 (92)
T ss_dssp             EEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             EEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEEE
Confidence            78999999998665444443333 359999999999999999999999987777766664

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.5e-15  Score=72.85  Aligned_cols=56  Identities=7%  Similarity=-0.010  Sum_probs=47.3

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .++|++++.++.   .  ....+..+.|.|.++++.|+|.|+|.|.|..|..+.++.|.|+
T Consensus        35 ~v~W~~~~~~~~---~--~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          35 SVQWRGLDTSLG---A--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEESSTTTTC---C--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeeeeee---e--eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEEC
Confidence            378999887663   1  2335667899999999999999999999999999999999885

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3.6e-14  Score=70.95  Aligned_cols=61  Identities=18%  Similarity=0.383  Sum_probs=48.7

Q ss_pred             eEEEe-CCEEec-cCCCEEEE-EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044           2 FDIFC-PRSQVR-SEGNVEIV-NVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k-~g~~l~-~~~~~~~~-~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      +.|+| +|..+. ...++.+. .....+.|.|.+++.+|+|.|+|.|.|..|.. ++++.|.|.+
T Consensus        33 v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~q   97 (97)
T d1epfa1          33 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ   97 (97)
T ss_dssp             EEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEC
T ss_pred             EEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEEC
Confidence            78999 566665 34566654 34567899999999999999999999999965 5778888863

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-15  Score=78.45  Aligned_cols=65  Identities=12%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             eEEEeCCEEec---cCCCEEEEEe------CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044           2 FDIFCPRSQVR---SEGNVEIVNV------PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus         2 ~~W~k~g~~l~---~~~~~~~~~~------~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      +.|+|++....   ...++.+...      ...+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.++|..
T Consensus        35 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          35 IKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             EEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCS
T ss_pred             EEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCCCc
Confidence            68999875432   2334433221      12457999999999999999999999999999999999987653

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.4e-14  Score=72.97  Aligned_cols=62  Identities=19%  Similarity=0.173  Sum_probs=47.7

Q ss_pred             eEEEeCCEEec-c--CCCEEEEEe------CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVR-S--EGNVEIVNV------PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~-~--~~~~~~~~~------~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|++.... .  ..++.....      ...+.|.|.+++.+|+|.|+|.|.|..|.+++.+.|.|.+.
T Consensus        39 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          39 VKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence            68999986443 1  233333221      12467999999999999999999999999999999999864

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.4e-15  Score=74.16  Aligned_cols=54  Identities=13%  Similarity=0.095  Sum_probs=45.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|+|+|..+..+. ...  ..  ..|+|.+++.+|+|.|+|.|.|..|..++++.|.|
T Consensus        35 v~W~k~~~~~~~~~-~~~--~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          35 LVWTRLHNGKLPSR-AMD--FN--GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEEEEGGGBCCCTT-EEE--ET--TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEecCCceeeccc-cEe--ec--eEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            68999998887443 222  22  36999999999999999999999999999999887

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.4e-14  Score=69.49  Aligned_cols=57  Identities=16%  Similarity=0.143  Sum_probs=48.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|++++..+..+   ........+.|.|.++++.|+|.|+|.|.|..|..+.++.|.|.
T Consensus        33 i~W~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          33 FSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EEEEETTCCCCSS---EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecCccceee---eeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEEE
Confidence            6899988766532   23445677899999999999999999999999999999999986

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-14  Score=69.96  Aligned_cols=53  Identities=21%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|++++..+..+          ...|.|.+++++|+|.|+|.|.|..|..+..+.|.|...|
T Consensus        31 i~W~~~~~~~~~~----------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          31 VQCRSPRGKNIQG----------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEECTTCCEEEE----------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECCC
T ss_pred             eEEEeecccceee----------eeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEecC
Confidence            6798876554321          2368999999999999999999999999999999999876

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.8e-14  Score=71.04  Aligned_cols=62  Identities=16%  Similarity=0.191  Sum_probs=45.8

Q ss_pred             eEEEeCCEEeccCCCEE--------EEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE--EEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVE--------IVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA--DVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~--------~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~--~~~l~V~~~   63 (68)
                      +.|+|+|.++.......        .......+.|.|.+++..|+|.|+|.|.|.+|.+..  .+.|.|.+.
T Consensus        35 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          35 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL  106 (110)
T ss_dssp             EEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred             EEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEEec
Confidence            78999999987543322        222334557999999999999999999999997754  677777765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.48  E-value=4.4e-14  Score=70.00  Aligned_cols=54  Identities=20%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|++..+...  .    ....+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|.
T Consensus        37 i~W~k~~~~~~~~--~----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          37 IKWRKLDGSQTSK--W----LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEECCSCCSCC--C----SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecccccceE--e----eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            6899977554321  1    1223479999999999999999999999999999999885

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.9e-14  Score=69.05  Aligned_cols=56  Identities=16%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLILKE   65 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~p~   65 (68)
                      +.|+|||+.+....        ..+.|.|.+++.+|+|.|.|.|.|..|.. +..+.|.|.++|.
T Consensus        33 ~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          33 VIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             EEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCCC
Confidence            68999999986422        22469999999999999999999999865 5678999999883

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=1.7e-14  Score=73.25  Aligned_cols=55  Identities=11%  Similarity=-0.045  Sum_probs=41.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADV   56 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~   56 (68)
                      +.|+|||.++......+.........|.|.+++++|+|.|+|.|.|..|..+.++
T Consensus        37 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          37 YRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             EEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            6899999877533222222233445799999999999999999999999877653

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.47  E-value=1.4e-14  Score=71.96  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=41.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEA   54 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|++||.+|....... ......+.|.|.+++.+|+|.|+|.|.|..|...+
T Consensus        35 v~W~~~g~~l~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s   86 (94)
T d1biha1          35 YSWKKDGKSYNWQEHNA-ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASS   86 (94)
T ss_dssp             EEEEESSSBCCTTTTTE-EECTTSCCEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEEEeeeeeeeeeccee-eecccceEEEEeccChhcCeEEEEEEEeCCCEEEE
Confidence            68999999997544322 22344557999999999999999999999997643

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.47  E-value=6.5e-14  Score=70.80  Aligned_cols=37  Identities=27%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .+.|.|.+++.+|+|.|+|.|.|..|.+.+++.|.|+
T Consensus        73 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          73 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            4679999999999999999999999999999999884

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=4.3e-14  Score=70.65  Aligned_cols=57  Identities=14%  Similarity=0.167  Sum_probs=44.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~   59 (68)
                      +.|+|||.+|....+..+.... .+.|.|..+...|+|.|+|.|.|..|... ..+.|.
T Consensus        39 v~W~~ng~~i~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          39 YRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEETTEECCCSTTSSEEEET-TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEeeeeccCCCCceEEeee-eeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            6899999999765444344333 35789999999999999999999999763 456654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-13  Score=68.04  Aligned_cols=49  Identities=20%  Similarity=0.275  Sum_probs=40.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|+|+|..+.....             +.++++.|+|.|+|.|.|.+|..+..+.|.|..+
T Consensus        36 v~W~k~g~~~~~~~~-------------~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          36 LKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             EEEEETTTEECCTTS-------------CEECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEeeccceeeee-------------eeccccCCCCEEEEEEEcCCCEEEEEEEEEEECC
Confidence            789999987764332             3457899999999999999999999999998753

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.44  E-value=1.7e-13  Score=67.66  Aligned_cols=54  Identities=19%  Similarity=0.120  Sum_probs=43.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~~   63 (68)
                      +.|+|||+++..        ......|.|.+++++|+|.|.|.|.|..|.. +..+.|.|.++
T Consensus        33 ~~W~k~g~~~~~--------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          33 VTFFQNGKSKKF--------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EEEEETTEEEEE--------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             EEEEeecccccc--------cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            689999998752        1223479999999999999999999999976 45688888663

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-14  Score=73.93  Aligned_cols=63  Identities=17%  Similarity=0.221  Sum_probs=50.0

Q ss_pred             eEEEeCCEEeccC--CCEEEEEe--CC--eEEEEEcCCCCCC-CEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSE--GNVEIVNV--PY--NTKLSIVDILRKN-SGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~--~~~~~~~~--~~--~~~l~I~~~~~~d-~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      +.|++++.++...  .++.+...  ..  .+.|.|.+++..| +|.|+|.|.|.+|.+++.+.|.|...+
T Consensus        39 v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          39 IAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             EEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             EEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            6799999998743  44544322  22  3579999999999 799999999999999999999987543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-13  Score=68.26  Aligned_cols=62  Identities=15%  Similarity=0.021  Sum_probs=45.7

Q ss_pred             eEEEeCCEEecc-C--CCEEEEEeCC--eEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRS-E--GNVEIVNVPY--NTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~-~--~~~~~~~~~~--~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~V~~~   63 (68)
                      +.|+|++.++.. .  ..........  ...|.|.+++.+|+|.|+|.|.|..|... .++.|.|.+.
T Consensus        36 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~ev  103 (104)
T d2aw2a1          36 VTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDV  103 (104)
T ss_dssp             EEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECG
T ss_pred             EEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEEEC
Confidence            789999876532 1  2222222222  34699999999999999999999999864 5789988763

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7e-15  Score=73.06  Aligned_cols=58  Identities=14%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCE-EEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSG-VYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|+++|.++.....  .........|.|.+++..|.| .|+|.|.|..|.+++++.|.|
T Consensus        33 ~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          33 QAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCC
T ss_pred             EEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            3689999988764222  122455678999999999999 699999999999999988875

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.2e-14  Score=69.44  Aligned_cols=37  Identities=19%  Similarity=0.415  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCccee-EEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDE-ADVEITV   60 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-~~~~l~V   60 (68)
                      ..+.|.|.++.++|+|.|+|.|.|..|... ..+.|.|
T Consensus        58 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          58 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            356799999999999999999999999874 4478887

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=67.55  Aligned_cols=53  Identities=19%  Similarity=0.149  Sum_probs=42.6

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V~~   62 (68)
                      +.|+|||+++...      .  ....|.|.+++++|+|.|.|.|.|..|.. +..+.|.|.+
T Consensus        35 ~~W~kng~~~~~~------~--~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          35 VTYLQNGKDRKYF------H--HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EEEEETTEEEEEE------E--ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEccccccee------c--cccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            6899999987621      1  12368999999999999999999999965 4568888875

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.3e-15  Score=74.56  Aligned_cols=60  Identities=15%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             eEEEeCCEEeccCCCEEEE-------EeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEE--EEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIV-------NVPYNTKLSIVDILRKNSGVYRIKAENASGKDEAD--VEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~-------~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~--~~l~V~   61 (68)
                      +.|+|+|.++....+....       .....+.|.|.+++..|+|.|+|.|.|.+|...++  +.|.|.
T Consensus        35 v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v~  103 (104)
T d1nbqa2          35 YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV  103 (104)
T ss_dssp             EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred             EEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEEEEEEEEEE
Confidence            6899999998754332211       11234579999999999999999999999988665  444443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=7.3e-13  Score=66.90  Aligned_cols=58  Identities=21%  Similarity=0.116  Sum_probs=45.0

Q ss_pred             eEEEeCCEEeccCCCEEE---EEeC---------CeEEEEEcCCCCCCCE-EEEEEEEcCCcceeEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEI---VNVP---------YNTKLSIVDILRKNSG-VYRIKAENASGKDEADVEIT   59 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~---~~~~---------~~~~l~I~~~~~~d~G-~Y~c~a~n~~g~~~~~~~l~   59 (68)
                      +.|++||.++........   ....         ..+.|.|.+++..|.| .|+|.|.|.+|.+++.+.|.
T Consensus        34 i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          34 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             EEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            789999999975432211   1111         1357999999999999 59999999999999999886

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2e-13  Score=68.02  Aligned_cols=57  Identities=14%  Similarity=0.130  Sum_probs=43.4

Q ss_pred             eEEEeCCEEeccC-CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSE-GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~-~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+++|.++... .++.+.   ....|.|.++++.|+|.|+|.|.|..|..+....|.+.
T Consensus        28 v~W~~~g~~l~~~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l~~~   85 (92)
T d1olza1          28 VFWKFQNGVLKAESPKYGLM---GRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKH   85 (92)
T ss_dssp             EEEEESSSBCCCCSSSBCCT---TTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEE
T ss_pred             eeeecCcccceeeeeeeecc---eeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEEEEE
Confidence            6799999998743 333321   12359999999999999999999999988766655543

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.4e-13  Score=65.26  Aligned_cols=50  Identities=10%  Similarity=0.112  Sum_probs=36.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      +.|+|||.+|....       ..  .+.|.....+|+|.|+|.|+|.+|.. +..+.|.|
T Consensus        34 i~W~k~g~~i~~~~-------~~--~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          34 IVWWRGTTKIGGPA-------PS--PSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEEETTEECSCSE-------ES--SEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEECCEECCCCC-------Cc--ceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            68999999997422       11  23455566779999999999999965 44677765

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.1e-13  Score=65.92  Aligned_cols=47  Identities=11%  Similarity=0.057  Sum_probs=36.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      +.|+|+|.++....+.... ..  ..|.|.+++.+|+|.|+|.|.|..+.
T Consensus        39 i~W~k~~~~l~~~~~~~~~-~~--~~L~I~~v~~~D~G~Y~C~a~n~~~~   85 (93)
T d1n26a1          39 VHWVLRKPAAGSHPSRWAG-MG--RRLLLRSVQLHDSGNYSCYRAGRPAG   85 (93)
T ss_dssp             EEEEEECSSSSCCCEEEEE-ES--SEEEECSCCGGGCEEEEEESSSSCSC
T ss_pred             EEEEEccccccceeeEEec-CC--CEEEECCCChhcCEEEEEEECCcccc
Confidence            6899999999865544332 22  37999999999999999999887643

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=66.43  Aligned_cols=59  Identities=7%  Similarity=0.053  Sum_probs=46.4

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLIL   63 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~   63 (68)
                      +.|++++.+|.....   ......+.|.|..+..+|.|.|+|.|+|..|....+..+.+.++
T Consensus        39 v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~p   97 (103)
T d1iama1          39 VVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAP   97 (103)
T ss_dssp             EEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCC
T ss_pred             EEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcCC
Confidence            679999999974221   11223568999999999999999999999999888887777643

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.3e-11  Score=61.84  Aligned_cols=58  Identities=22%  Similarity=0.378  Sum_probs=44.0

Q ss_pred             eEEEeCCEEecc----------CCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRS----------EGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~----------~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.|+|++..+..          ..+..+  . ...+|.|.+++.+|+|.|+|.+.|..|..  +..+.|.|.+
T Consensus        29 I~W~~~~~~i~~~~~~~~~~~~~~~~~~--~-~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~E   98 (98)
T d1hnga1          29 VRWERGSTLVAEFKRKMKPFLKSGAFEI--L-ANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILE   98 (98)
T ss_dssp             EEEEETTEEEEEEETTSCCEESSTTEEE--C-TTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred             eeeeccccceeEEccCCccccCCCeEEE--C-CCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEEC
Confidence            789999987741          112221  1 22359999999999999999999999976  6778888875

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.1e-13  Score=67.09  Aligned_cols=35  Identities=17%  Similarity=0.460  Sum_probs=30.5

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|.|.+++.+|+|.|+|.|.|+.|.....+.|.|
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             ceEEEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            36999999999999999999999998877666554

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-11  Score=61.02  Aligned_cols=56  Identities=13%  Similarity=0.084  Sum_probs=40.1

Q ss_pred             CeEEEeCCEEeccC------------CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           1 MFDIFCPRSQVRSE------------GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         1 ~~~W~k~g~~l~~~------------~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      .+.|++++..+..-            .+..  .......|.|.+++.+|+|.|+|.|.|..+..+  +.|.|
T Consensus        25 ~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~--~~l~V   92 (93)
T d1ccza1          25 EVLWKKQKDKVAELENSEFRAFSSFKNRVY--LDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK--FFLYV   92 (93)
T ss_dssp             CEEEEETTEEEEEEETTEEEECGGGTTSEE--ECTTTCCEEECSCCGGGCEEEEEECTTCCSCEE--EEEEE
T ss_pred             EEEEEEeccccceeeecceeeCCCccceEE--EcCCeeEEEEEecChhhCEEEEEEEECCCcEEE--EEEEE
Confidence            37899999876411            1222  223345799999999999999999999887655  55555

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.4e-12  Score=64.75  Aligned_cols=61  Identities=5%  Similarity=-0.113  Sum_probs=43.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|||++|.......+...  ...+.|.|.....+|.|.|+|.|+|..|.......+.+.+
T Consensus        37 i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~~s~   99 (106)
T d1zxqa1          37 LFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSA   99 (106)
T ss_dssp             EEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTCCEEEEECC
T ss_pred             EEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCCeeEecccC
Confidence            689999999974322111111  1245688888888899999999999999887777666644

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1.1e-10  Score=59.85  Aligned_cols=45  Identities=27%  Similarity=0.164  Sum_probs=40.8

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcCCC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKENIN   68 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~~~   68 (68)
                      +...|.|.+++.+|+|.|.|.+.|..+..+..+.|.|.+++-.|+
T Consensus        79 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~~  123 (126)
T d1pkoa_          79 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWIN  123 (126)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTTSS
T ss_pred             CeEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEEeC
Confidence            357899999999999999999999999999999999999877663

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.03  E-value=1.8e-11  Score=62.54  Aligned_cols=60  Identities=15%  Similarity=0.086  Sum_probs=42.0

Q ss_pred             eEEEeCCEEeccCCCE-----EEEEeCCeEEEEEcCCCCCCCE---EEEEEEEcCCcceeEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNV-----EIVNVPYNTKLSIVDILRKNSG---VYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-----~~~~~~~~~~l~I~~~~~~d~G---~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      +.|+|+|..+....+.     .+.. .....|.|.+++..|+|   .|.|.|.|.+|.+.....+.+..
T Consensus        35 v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~~~~~~i~  102 (111)
T d1biha2          35 ITWKKRLSGADPNADVTDFDRRITA-GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIK  102 (111)
T ss_dssp             EEEEEEETTSCGGGCCCCCCTTEEE-CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEEC
T ss_pred             EEEEeCCccccccccceeeeeeecc-ccccccEEeeeEeeccCCceEEEEEEEeCCCCceEEEEEEEeC
Confidence            6899998776432211     1121 22346999999998877   79999999999998876665554

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.02  E-value=1.6e-10  Score=56.30  Aligned_cols=48  Identities=21%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|+|||..+....          ..|.|.+++..|+|.|.|.|.|..+.+.  +.|.|.
T Consensus        37 ~~w~~~g~~~~~~~----------~~l~i~~v~~~dsG~Y~C~a~ns~~S~~--v~l~V~   84 (85)
T d2fcba1          37 IQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLTVL   84 (85)
T ss_dssp             CEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEECTTSBCCCC--EEEEEE
T ss_pred             EEeecccccccccc----------cceEEeeccccCCcEEEEECCCCccccc--EEEEEE
Confidence            57999999987432          2588999999999999999999876554  445553

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=7e-10  Score=53.62  Aligned_cols=48  Identities=21%  Similarity=0.313  Sum_probs=37.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      +.|++||..+....          ..|.|.+++..|+|.|.|.|.|..+.+.  +.|.|.
T Consensus        34 ~~~~~~~~~~~~~~----------~~l~i~~v~~~d~G~Y~C~a~~s~~S~~--v~l~V~   81 (82)
T d1f2qa1          34 TKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKCQHQQVNESEP--VYLEVF   81 (82)
T ss_dssp             CEEEETTEECSCCS----------SEEEECSCCGGGCEEEEEECTTSSCCCC--EEEEEE
T ss_pred             eeeeeeeeeeeccc----------ceeEECCCChhhCCcEEEEecCCCCccc--EEEEEE
Confidence            45899998887422          3599999999999999999999876554  455553

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.99  E-value=7.1e-10  Score=53.82  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=33.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      +.|++||..+....          ..|.|.+++..|+|.|+|.|.|..+.+.
T Consensus        38 ~~~~~~~~~~~~~~----------~~l~i~~~~~~d~G~Y~C~a~~s~~S~~   79 (84)
T d1fnla1          38 TQWFHNESLISSQA----------SSYFIDAATVNDSGEYRCQTNLSTLSDP   79 (84)
T ss_dssp             CEEEETTEEEESSC----------SEEEESSCCGGGCEEEEEECSSSCCCCC
T ss_pred             EEEeeeceeeeecc----------eeeEecCCcccCCEEEEEEccCCCcccc
Confidence            46899998876322          3699999999999999999998766543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=3.2e-09  Score=52.64  Aligned_cols=35  Identities=20%  Similarity=0.471  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +.|.|.+++.+|+|.|.|.|.|..|.....+.|.|
T Consensus        65 ~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEE
T ss_pred             CEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEE
Confidence            36999999999999999999999998776655544

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-08  Score=50.68  Aligned_cols=37  Identities=19%  Similarity=0.484  Sum_probs=34.0

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      ...|.|.+++.+|+|.|.|.+.|..|..+..+.|.|.
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            4579999999999999999999999999999999885

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=1.8e-07  Score=47.09  Aligned_cols=39  Identities=13%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCc--ceeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASG--KDEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g--~~~~~~~l~V~~   62 (68)
                      +...|.|.+++..|+|.|.|.+.+..+  .....+.|.|.+
T Consensus        79 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~e  119 (119)
T d1neua_          79 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE  119 (119)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC
T ss_pred             CEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEEC
Confidence            345799999999999999999998654  445668888865

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5e-07  Score=45.41  Aligned_cols=52  Identities=21%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCCcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILKEN   66 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p~~   66 (68)
                      .+..+...  .+...|.|.+++.+|+|.|.|.+..........+.|.|.+.+..
T Consensus        61 ~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~~~  114 (116)
T d1xeda_          61 GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHHHH  114 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEECCCCC
T ss_pred             CCccEeeeCCCCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEECCCcc
Confidence            34444433  34568999999999999999988655555567789999987653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.6e-06  Score=42.88  Aligned_cols=50  Identities=10%  Similarity=0.030  Sum_probs=34.2

Q ss_pred             eEEEeCCEEec------------cCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVR------------SEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~------------~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|.+++..+.            -..++.... .+..+|.|.+++.+|+|.|.|.+.+..+..
T Consensus        30 v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          30 IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             EEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEEEEEECCTTS
T ss_pred             EEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEEEEEEeCCCCC
Confidence            56888776542            013444432 344579999999999999999998765543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.2e-06  Score=39.65  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=28.2

Q ss_pred             EEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044           3 DIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus         3 ~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+|+|+.|++...     .+....+.|..  .+++|+|.|+--
T Consensus        32 rW~K~gkvl~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2          32 RWLKGGVVLKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEESSSEEEECTTC-----CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred             EEeeCCEEccccCC-----CCCceEEEEec--CCCCceEEEEEc
Confidence            59999999985422     34456788875  779999999854

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=3.5e-07  Score=45.93  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCc-ceeEEEEEEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASG-KDEADVEITV   60 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g-~~~~~~~l~V   60 (68)
                      .+|.|.+++.+|+|.|+|.+.+..+ ..++.+.|.|
T Consensus        71 gSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             ccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            4699999999999999999998875 5677788776

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.5e-05  Score=39.61  Aligned_cols=63  Identities=14%  Similarity=0.146  Sum_probs=38.7

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcc-------eeEEEEEEEEcCC
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVP---YNTKLSIVDILRKNSGVYRIKAENASGK-------DEADVEITVLILK   64 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-------~~~~~~l~V~~~p   64 (68)
                      +.|++++.++....... .....   ..+.|.+.-...++...|+|.|+|..+.       .+....|.|...|
T Consensus        36 i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          36 IDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             EEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            67999999876211000 00001   1245777755555666899999999765       3445668887766

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.6e-06  Score=42.64  Aligned_cols=60  Identities=12%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.|+|+|........ ..........+.|.+++..|+|.|.|...+..+..  +....|.|.|
T Consensus        34 f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~VTd   95 (95)
T d1olla1          34 YQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   95 (95)
T ss_dssp             EEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEES
T ss_pred             EEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEEeC
Confidence            567888764321000 00012334679999999999999999998876632  4456676654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.3e-06  Score=42.71  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=25.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      ...|.|.+++.+|+|.|.|.+.+.    +..+.|.|
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE----EEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEecC----CeEEEEEC
Confidence            346999999999999999998653    45556554

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=7.8e-06  Score=40.48  Aligned_cols=45  Identities=13%  Similarity=0.324  Sum_probs=34.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      +.+.+...   .+|.|+.+.+.|+|.|.+.+.|.-|..  ..++.|.|.+
T Consensus        55 ~~y~i~~n---GtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~E  101 (101)
T d1hnfa1          55 DTYKLFKN---GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE  101 (101)
T ss_dssp             TTEEECTT---SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEEC
T ss_pred             ceEEEccC---CcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEeeC
Confidence            44554332   369999999999999999999999976  5567777653

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.2e-05  Score=39.66  Aligned_cols=39  Identities=21%  Similarity=0.398  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEc--CCcc---eeEEEEEEEE
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAEN--ASGK---DEADVEITVL   61 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n--~~g~---~~~~~~l~V~   61 (68)
                      .+...|.|.+++.+|+|.|.|.+..  +.|.   ....+.|.|.
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          66 SDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             CCeEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            3445799999999999999999863  3343   2556777765

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.4e-06  Score=41.48  Aligned_cols=36  Identities=14%  Similarity=0.208  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITV   60 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V   60 (68)
                      ...+.|.+++..|+|.|.|...|.....  +....|.|
T Consensus        61 ~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          61 DPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             CCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             eEEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            3468999999999999999999987633  33455554

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.87  E-value=2.7e-05  Score=38.71  Aligned_cols=46  Identities=7%  Similarity=0.004  Sum_probs=34.1

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +++..........|.|.+++.+|+|.|-|.+.+....-.....|+|
T Consensus        59 ~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~~~~~FG~GT~LtV  104 (106)
T d1a0ql1          59 SRFRGSGSGRDYSFSISNLEPEDIATYYCLQYYNLRTFGGGTKLEI  104 (106)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSCEECCCEEEEE
T ss_pred             cceEeecCCCEeeeEehhhcccCCEeEEEEEeCCCCeECCCeEEEE
Confidence            5677777777889999999999999999987654443333445544

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=0.00017  Score=35.98  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=34.8

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVLIL   63 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~~~   63 (68)
                      .++.+....  ....|.|.+++.+|+|.|-|.+....+..    .....|.|.++
T Consensus        60 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~~~~FG~GT~L~V~~k  114 (114)
T d3bp5a1          60 ARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTER  114 (114)
T ss_dssp             TTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECSSSSCCCEECCCEEEEEECC
T ss_pred             CcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeCCCCcceEECcCeEEEEEEC
Confidence            566665543  34679999999999999999887554322    34567777664

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.81  E-value=9e-05  Score=37.31  Aligned_cols=50  Identities=18%  Similarity=0.136  Sum_probs=37.1

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcce---eEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKD---EADVEITVLILK   64 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~---~~~~~l~V~~~p   64 (68)
                      .++.+........|.|.+++.+|+|.|-|.+.-.....   .....|+|.+.|
T Consensus        61 ~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~~~~~~~~FG~GT~LtVlg~p  113 (114)
T d2rhea_          61 DRFSASKSGTSASLAISGLESEDEADYYCAAWNDSLDEPGFGGGTKLTVLGQP  113 (114)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEECSCC
T ss_pred             CcceecCCCCeeeeEecccCcccCceEEEeecCCCCCCCEECCCeEEEECCCc
Confidence            46666666778899999999999999999876432221   245688888766

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.81  E-value=4.1e-05  Score=38.22  Aligned_cols=29  Identities=14%  Similarity=0.059  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      .....|.|.+++.+|+|.|-|.+....+.
T Consensus        71 ~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~   99 (114)
T d2ak4d1          71 TSSFNFTITASQVVDSAVYFCALSGFYNT   99 (114)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEECSBTT
T ss_pred             CCEEEEeecccccccCCCceEeCCCCCCC
Confidence            34678999999999999999988776553

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.7e-05  Score=36.76  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .++.+...  .+...|.|.+++.+|+|.|.|.+.....
T Consensus        57 ~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v~~~~~   94 (108)
T d1hkfa_          57 SRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSD   94 (108)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECTTT
T ss_pred             eeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEEecCCC
Confidence            45554433  4567899999999999999998875444

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=9.9e-05  Score=36.95  Aligned_cols=46  Identities=17%  Similarity=0.083  Sum_probs=31.9

Q ss_pred             EEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcc-----eeEEEEEEEEcC
Q psy7044          18 EIVNVPYNTKLSIVDILRKNSGVYRIKAENASGK-----DEADVEITVLIL   63 (68)
Q Consensus        18 ~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-----~~~~~~l~V~~~   63 (68)
                      ..........|.|.+++.+|+|.|-|.++.....     -.....|.|.|+
T Consensus        67 ~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~~~~~~~~~fG~GT~L~V~dp  117 (117)
T d1dqta_          67 SGTFNESRVNLTIQGLRAVDTGLYLCKVELMYPPPYFVGMGNGTQIYVIDP  117 (117)
T ss_dssp             EEEEETTEEEEEECSCCGGGCEEEEEEEEEEESSSCEEEECSCEEEECCCC
T ss_pred             EEeCCCCEEEEEhhcCccccCEeEEEEEecCcCCCceeEECCCEEEEEECC
Confidence            3455566788999999999999999988632221     133456666653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.70  E-value=0.00011  Score=36.77  Aligned_cols=46  Identities=11%  Similarity=0.094  Sum_probs=32.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      +++..........|.|.+++.+|+|.|-|.+.+..-.-.....|+|
T Consensus        66 ~~~s~~~s~~~~~L~I~~l~~~Dsa~YyCA~~~~~~~FG~GT~LtV  111 (113)
T d1q9ra1          66 DRFTGSGSGTDFTLTITSVQAEDLAVYYCKQSYNLRTFGGGTKLEI  111 (113)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSCEECCCEEEEE
T ss_pred             ccEEEeCCCCeEeEEecccccCCCeEEEecccCCCCEECCCEEEEE
Confidence            5667777777788999999999999999976533222233344444

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.68  E-value=0.00012  Score=36.63  Aligned_cols=46  Identities=17%  Similarity=0.228  Sum_probs=32.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCcceeE----EEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASGKDEA----DVEITV   60 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~----~~~l~V   60 (68)
                      +|+.+....  ....|+|.+++.+|+|.|-|.+....+....    ...|.|
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~~~~FG~GT~L~V  114 (116)
T d1tvda_          63 GRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLIFGKGTRVTV  114 (116)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTTTCCEEECCCEEEEE
T ss_pred             eEEEEEecCceeEEeeeecCccccccccceeeEecCCCCceeEECcCEEEEE
Confidence            466654432  3467999999999999999988766554432    245655

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=0.00013  Score=35.95  Aligned_cols=33  Identities=9%  Similarity=0.029  Sum_probs=26.9

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .++..........|.|.+++.+|+|.|-|.+..
T Consensus        58 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          58 VRFSGSGSGTSYSLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ceEEEecCCCEEEEEecccCcccCCeEEEEecC
Confidence            456666666778899999999999999996643

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.61  E-value=0.00011  Score=36.44  Aligned_cols=39  Identities=13%  Similarity=0.151  Sum_probs=27.7

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEE
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVL   61 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~   61 (68)
                      .....|.|.+++.+|+|.|-|.+....+..    .....|.|.
T Consensus        66 ~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~~~FG~GT~L~V~  108 (110)
T d2esvd1          66 RKSSTLILPHATLRDTAVYYCIVVRSSNTGKLIFGQGTTLQVK  108 (110)
T ss_dssp             CSEEEEEESSCCGGGCEEEEEEEEESCSSCCCCCCCCEEEEEE
T ss_pred             CCeeeehhcccccCCceEEEEEEeCCCCCCccEECCCEEEEEE
Confidence            456789999999999999999876443322    233456664

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.59  E-value=0.00012  Score=36.23  Aligned_cols=33  Identities=12%  Similarity=0.105  Sum_probs=27.5

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .++......+...|.|.+++.+|+|.|-|.+.+
T Consensus        60 ~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          60 SRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             cceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            566666667778899999999999999997654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00013  Score=36.41  Aligned_cols=32  Identities=22%  Similarity=0.180  Sum_probs=27.4

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .++.+........|.|.+++.+|+|.|-|.+.
T Consensus        66 ~rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~   97 (114)
T d1akjd_          66 QRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL   97 (114)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cEEEEECCCCChhcEEccCCCCCCEEEeEeEc
Confidence            46677777777889999999999999999765

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.57  E-value=0.00023  Score=35.35  Aligned_cols=36  Identities=11%  Similarity=0.120  Sum_probs=29.4

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .++..........|.|.+++.+|+|.|-|.+.+..+
T Consensus        62 ~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~~~   97 (112)
T d1lgva1          62 DRFSGSKSGNSASLTISGLQAEDEADYYCSSYDGSS   97 (112)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             ccEEEECCCCEeeEEeCcCccccCEEEEEeeecCCC
Confidence            456666667788899999999999999998876544

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=7.2e-05  Score=36.61  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      +...|.|.+++.+|+|.|.|.++...+.
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~  104 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEISDSN  104 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC-CC
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeCCCC
Confidence            4557999999999999999999765443

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.53  E-value=0.00031  Score=34.41  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=28.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .+...........|.|.+++.+|+|.|-|.+...
T Consensus        57 ~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          57 QRFSSSTSGTTVTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEECCCCCccCceEcCcchhHCceEEeeecCC
Confidence            4666677777889999999999999999976643

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.53  E-value=0.00024  Score=35.11  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=28.5

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .++..........|.|.+++.+|+|.|-|.+.+.
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQANS   93 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcceecccCCEEEEEEcccCcCCCEEEEEEcCCC
Confidence            5777777777889999999999999999976543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.51  E-value=0.0002  Score=35.42  Aligned_cols=33  Identities=12%  Similarity=0.072  Sum_probs=27.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +++..........|.|.+++.+|+|.|-|.+.+
T Consensus        61 ~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          61 DRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             cceeeecCCCEEEEEehHheecccEEEeeecCC
Confidence            466777677778999999999999999997653

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.50  E-value=0.00051  Score=34.28  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=32.8

Q ss_pred             eEEEeC------CEEeccCCCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044           2 FDIFCP------RSQVRSEGNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus         2 ~~W~k~------g~~l~~~~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      +.|++.      ...+..+.++......  ....|.|.+++.+|+|.|-|.+.-..
T Consensus        33 i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          33 TCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             EEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             eEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCC
Confidence            568872      2334444566554332  35689999999999999999776543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4e-05  Score=38.39  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      +...|.|.+++.+|+|.|.|.++..-
T Consensus        81 ~~~sL~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          81 KNCTLSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEECCCChHHCEEEEEEEEeCC
Confidence            35679999999999999999987543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.49  E-value=0.00025  Score=35.23  Aligned_cols=34  Identities=9%  Similarity=0.051  Sum_probs=28.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +++..........|.|.+++.+|+|.|-|.+...
T Consensus        61 ~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          61 DRFSGSKSGTSATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             cceeeeCCCCEeeeEEeeeccccCcceEEeecCC
Confidence            5677777777789999999999999999987644

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.48  E-value=0.00035  Score=34.43  Aligned_cols=33  Identities=9%  Similarity=0.062  Sum_probs=27.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      ++..+........|.|.+++.+|+|.|-|.+..
T Consensus        60 ~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          60 DRFTGSGSATDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ceEEeeccCCeeecEEHhheecCCceEEEEecC
Confidence            566676677788899999999999999997653

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=0.00029  Score=35.13  Aligned_cols=33  Identities=9%  Similarity=0.044  Sum_probs=28.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .++.+........|.|.+++.+|+|.|-|.+..
T Consensus        62 ~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          62 ARFSGSLIGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             eeeeecccccceeeecCCCCccccEeEEEEccc
Confidence            567777677788999999999999999998764

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.45  E-value=0.00055  Score=33.36  Aligned_cols=51  Identities=16%  Similarity=0.185  Sum_probs=33.0

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||.++..+...  ...+.++ .+.+..-.+...+...|+|.+..+....
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~~   90 (98)
T d1d5mb1          37 VRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS   90 (98)
T ss_dssp             EEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCSS
T ss_pred             EEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCCC
Confidence            7899999998643111  1223333 3444445566788889999999876644

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.45  E-value=0.00032  Score=34.61  Aligned_cols=33  Identities=9%  Similarity=0.025  Sum_probs=27.9

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +++..........|.|.+++.+|+|.|-|.+..
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          59 SRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             CceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            467777667778899999999999999997664

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.44  E-value=0.00018  Score=35.79  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcceeE-----EEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDEA-----DVEITVL   61 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~-----~~~l~V~   61 (68)
                      ....|+|.+++.+|+|.|-|.+....+....     ...|.|.
T Consensus        70 ~~~sL~i~~~~~~Dsg~Y~Ca~~~~~~~~~~~~FG~GT~L~V~  112 (114)
T d2cdea1          70 KQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVW  112 (114)
T ss_dssp             SEEEEEECSCCGGGCSEEEEEEECSCTTTCCEEECCCEEEEEE
T ss_pred             cccccEEcccChhhCcccceeeecCCCCcCEeEECCCCEEEEE
Confidence            4567999999999999999998875443221     2466665

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.44  E-value=0.00013  Score=36.20  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=27.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +++.+...+....|.|.+++.+|+|.|-|.+..
T Consensus        60 ~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          60 SRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             TTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             cccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            567766566678899999999999999997654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00038  Score=34.45  Aligned_cols=32  Identities=13%  Similarity=0.237  Sum_probs=24.3

Q ss_pred             CEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          16 NVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        16 ~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      |+.+...  .+...|+|.+++.+|+|.|-|.+.-
T Consensus        64 R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQ   97 (113)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eEEEEEECCCCEEEEEEccCCcccCceEEEEEEC
Confidence            5555443  3456799999999999999997643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.43  E-value=0.00039  Score=34.39  Aligned_cols=33  Identities=6%  Similarity=0.057  Sum_probs=27.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +++..........|.|.+++.+|+|.|-|.+..
T Consensus        62 ~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          62 SRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            567777777778899999999999999997654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.39  E-value=0.00035  Score=34.66  Aligned_cols=34  Identities=9%  Similarity=-0.018  Sum_probs=27.1

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .+...........|.|.+++.+|+|.|-|.+.+.
T Consensus        60 ~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          60 KRFSGSRSGSDYSLTISSLESEDFADYYCLQYAS   93 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CceEecccCCEEEEEEhhhcccCCeEEEEecCcC
Confidence            4556665666778999999999999999976543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.37  E-value=0.00056  Score=33.99  Aligned_cols=34  Identities=9%  Similarity=0.054  Sum_probs=28.1

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +++..........|+|.+++.+|+|.|-|.+...
T Consensus        64 ~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          64 ARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEecCCCchhcccccccccCCceEEEEECCC
Confidence            5677666667788999999999999999976544

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.37  E-value=0.00051  Score=33.91  Aligned_cols=34  Identities=12%  Similarity=0.130  Sum_probs=28.0

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +++..........|.|.+++.+|+|.|-|.+...
T Consensus        60 ~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          60 SRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceeecccCCEEEccccccCCcCCEEEEeeeccC
Confidence            4676666677789999999999999999976543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.37  E-value=0.00038  Score=34.41  Aligned_cols=33  Identities=12%  Similarity=0.078  Sum_probs=27.5

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .++..........|.|.+++.+|+|.|-|.+..
T Consensus        60 ~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          60 DRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            566766666778899999999999999997653

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.34  E-value=0.00038  Score=34.40  Aligned_cols=34  Identities=9%  Similarity=0.020  Sum_probs=27.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .++..........|.|.+++.+|+|.|-|.+.+.
T Consensus        60 ~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          60 SRFSGSGSGTEFTLTISTLRPEDFATYYCQQLHF   93 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSB
T ss_pred             cceEEeccCCEEEEEeccceeCcCceEEEEECcC
Confidence            4666666667789999999999999999966543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0001  Score=35.93  Aligned_cols=51  Identities=6%  Similarity=0.025  Sum_probs=29.3

Q ss_pred             CeEEEeCCEEeccC--CCEEE-EEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           1 MFDIFCPRSQVRSE--GNVEI-VNVPY-NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         1 ~~~W~k~g~~l~~~--~~~~~-~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      .++|++||+++..+  ..... .+.++ .+....-.+...+...|+|.+..+...
T Consensus        33 ~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~sl~   87 (94)
T d1de4a1          33 TMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPGLD   87 (94)
T ss_dssp             EEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTTSS
T ss_pred             EEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence            37899999998632  11122 22232 222222233345667899999987543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.34  E-value=0.0009  Score=33.21  Aligned_cols=35  Identities=11%  Similarity=0.047  Sum_probs=28.9

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ++...........|.|.+++.+|+|.|-|.+....
T Consensus        59 ~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~~~   93 (109)
T d1w72l1          59 ERFSGSNSGNMATLTISRVEAGDEADYYCQVWDSR   93 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             eeEeeecCCCccceEEeeeccCCCEEEEEEecCCC
Confidence            46666667778899999999999999999876543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.33  E-value=0.00025  Score=35.13  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=27.5

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      ...|+|.+++.+|+|.|-|.+.......  .....|+|+|
T Consensus        72 ~~~L~i~~~~~~Dsa~YyCa~~~~~~~~~FG~GT~LtVld  111 (111)
T d2esve1          72 YSTLKVQPAELEDSGVYFCASSQDRDTQYFGPGTRLTVLE  111 (111)
T ss_dssp             SEEEEESSCCGGGCEEEEEEEESSSSSCEECCCEEEEEES
T ss_pred             EEEEEECCcccCCCceEEEeeeCCCCccEECCCeEEEEeC
Confidence            4689999999999999999766433322  3446666664

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00018  Score=36.39  Aligned_cols=47  Identities=11%  Similarity=0.026  Sum_probs=32.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~   61 (68)
                      .++..........|.|.+++.+|+|.|-|.+....-.-.....|+|.
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~~~~~FG~GT~LtV~  106 (119)
T d1f3rb2          60 SRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK  106 (119)
T ss_dssp             TTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred             eeecccCCCCEEEEEcccCccCCCeEEEeeccCCCCeECCCeEEEEe
Confidence            45666656667789999999999999999876533222333455554

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00084  Score=32.65  Aligned_cols=50  Identities=6%  Similarity=0.114  Sum_probs=29.5

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPY-NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|++||+++........ ...++ .+....-.+...+.+.|+|.+.-+.-.
T Consensus        37 V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~sl~   88 (99)
T d1lk2b_          37 IQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMA   88 (99)
T ss_dssp             EEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTTSS
T ss_pred             EEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCCCC
Confidence            789999999874332222 22222 222222233456677899999876654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.30  E-value=0.00057  Score=34.06  Aligned_cols=33  Identities=12%  Similarity=0.105  Sum_probs=26.9

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +++..........|.|.+++.+|+|.|-|...+
T Consensus        66 ~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          66 DRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             TTEEEEECSSEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCeeeeccCCcccCccCCCCcccCEEEEEEECC
Confidence            566666666678999999999999999996554

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.30  E-value=0.0007  Score=33.56  Aligned_cols=34  Identities=12%  Similarity=0.121  Sum_probs=26.4

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .+...........|.|.+++.+|+|.|-|.+.+.
T Consensus        60 ~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          60 SRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             TTEEEEESSSEEEEEECSCCTTCCSEEEEEECSS
T ss_pred             ccccccCCCCEEEeEeeeeEeccceEEEEeeCCC
Confidence            3455555556678999999999999999976654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.30  E-value=0.00033  Score=33.74  Aligned_cols=34  Identities=18%  Similarity=0.104  Sum_probs=25.8

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +++.....  .....|.|.+++.+|+|.|-|.+...
T Consensus        44 ~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          44 GRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            45555433  33568999999999999999988754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.29  E-value=0.001  Score=32.87  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=27.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +|+.+........|.|.+++.+|+|.|-|.+.-
T Consensus        58 ~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          58 ERFSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             ceeeecCCCCEeeeeEcCccccCCceEEEEeec
Confidence            467777667778899999999999999997763

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.27  E-value=0.00047  Score=34.25  Aligned_cols=38  Identities=32%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVL   61 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~   61 (68)
                      ..+.|.|.+++.+|+|.|-|.+....+..    .....|+|.
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~~~FG~GT~L~V~  110 (113)
T d1h5ba_          69 RYSTLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVM  110 (113)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEECSSSSSSCEECCCEEEEEE
T ss_pred             ceeEEEECCCCHhHCEEEEEEecCCCCCCeeEECcCEEEEEE
Confidence            45679999999999999999887655432    233567665

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.27  E-value=0.00034  Score=34.66  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce---eEEEEEEEEc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD---EADVEITVLI   62 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~---~~~~~l~V~~   62 (68)
                      ...|+|.+++.+|+|.|-|.+.-..+..   .....|+|.|
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~~FG~GT~LtV~d  112 (112)
T d1kgce1          72 VSTLKIQRTQQEDSAVYLCASSLGQAYEQYFGPGTRLTVTE  112 (112)
T ss_dssp             CEEEEESSCCGGGCEEEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             EEEEEECCCCcCCCEEEEEeeeCCCCCCcEECcCEEEEEeC
Confidence            4689999999999999999775322211   2346677764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00023  Score=35.00  Aligned_cols=51  Identities=6%  Similarity=0.068  Sum_probs=29.7

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||.++...... ...+.++ .+....-.+..++.+.|+|.+.-+....
T Consensus        38 v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~   90 (100)
T d1k5nb_          38 VDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQ   90 (100)
T ss_dssp             EEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTTCSS
T ss_pred             EEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCCCCC
Confidence            6899999999642211 1222333 2222222334566779999998876543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.27  E-value=0.00027  Score=34.71  Aligned_cols=25  Identities=24%  Similarity=0.195  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .....|.|.+++.+|+|.|-|.+.-
T Consensus        68 ~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          68 EKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             GGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             CCeeEeEeccCCCCCceeEeeeecC
Confidence            3456899999999999999998763

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.26  E-value=0.00028  Score=35.01  Aligned_cols=35  Identities=17%  Similarity=0.111  Sum_probs=26.2

Q ss_pred             CEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          16 NVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        16 ~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      ++.+...  .....|.|.+++.+|+|.|-|.+.-..+
T Consensus        61 ~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~   97 (115)
T d1fo0a_          61 HYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYG   97 (115)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECCCT
T ss_pred             ceEEEEeccCCEEEEEECCCCccccccccceeecCCC
Confidence            4444433  3467899999999999999998775544

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.24  E-value=0.00097  Score=32.84  Aligned_cols=29  Identities=10%  Similarity=0.008  Sum_probs=23.8

Q ss_pred             EEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          19 IVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        19 ~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .........|.|.+++.+|+|.|-|.+..
T Consensus        67 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          67 SRPSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            34455678899999999999999997654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.24  E-value=0.00071  Score=33.74  Aligned_cols=40  Identities=15%  Similarity=0.242  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEEc
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVLI   62 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~~   62 (68)
                      .....|.|.+++.+|+|.|-|.+....+..  .....|+|..
T Consensus        68 ~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~FG~GT~LtV~~  109 (115)
T d1ogad1          68 RKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKP  109 (115)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEEEECTTSSEEECCCEEEEEEC
T ss_pred             cceeeeeecCCCccceeeEcccccCCCCCcEECCCEEEEEec
Confidence            346789999999999999999887555432  3456777763

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.00054  Score=33.71  Aligned_cols=32  Identities=9%  Similarity=0.106  Sum_probs=27.0

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .++..........|.|.+++.+|+|.|-|.+.
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          59 ARFSGSGSGTDFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CceeeecCCCEEEeEECCcChhhCCCcccccc
Confidence            56777767777899999999999999999654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00031  Score=34.24  Aligned_cols=43  Identities=14%  Similarity=0.036  Sum_probs=30.0

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|+|+|....  ...  ........+.|.+++..|+|.|+|.-...
T Consensus        36 f~L~k~g~~~~--~~~--~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          36 FSLAKEGELSL--PQH--QSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EEEEETTCSSC--CSE--EECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             EEEEECCcccc--eEE--cCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            56788885322  111  22344578999999999999999987644

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.18  E-value=0.00066  Score=33.66  Aligned_cols=32  Identities=16%  Similarity=0.153  Sum_probs=27.0

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .++..........|.|.+++.+|+|.|-|.+.
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          60 SRFSGSGSGTQFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCEEEeccCCEEEEEEccccccCCeeEEEeee
Confidence            46666666777889999999999999999765

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.00026  Score=34.20  Aligned_cols=47  Identities=17%  Similarity=0.099  Sum_probs=29.3

Q ss_pred             eEEEeCCEEeccCCCEEEE-EeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEIV-NVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~-~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||.++..+ ..... ..++    .+.|.|.   ..+...|+|.+.-+....
T Consensus        34 v~W~~ng~~~~~~-~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~sL~~   85 (91)
T d3frua1          34 FRFLRNGLASGSG-NCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEGLAQ   85 (91)
T ss_dssp             EEEEETTEECCCC-EEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTSSS
T ss_pred             EEEEECCEeCCcc-CccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCCCCC
Confidence            7899999988643 22222 2222    2346665   345678999998776543

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=0.0007  Score=33.47  Aligned_cols=39  Identities=13%  Similarity=0.136  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcc-----eeEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGK-----DEADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~-----~~~~~~l~V~~   62 (68)
                      ....|.|.+++.+|+|.|-|.+....+.     -..-..|+|+|
T Consensus        70 ~~~~L~I~~~~~~Dsa~YyCA~~~~~~~~~~~~FG~GT~LtVld  113 (113)
T d2ntsp1          70 SRSEMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLTVVE  113 (113)
T ss_dssp             SCEEEEECSCCGGGCEEEEEEEESSSCSSCCCEECCCEEEEEES
T ss_pred             CeeEEEECCCCcccceeeeeeeeCCCCCCcEeEECCCeEEEEEC
Confidence            3568999999999999999987743321     12334666654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=0.00053  Score=33.96  Aligned_cols=39  Identities=10%  Similarity=0.080  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEEc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVLI   62 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~~   62 (68)
                      ....|.|.+++.+|+|.|-|.+....+..    .....|.|.|
T Consensus        71 ~~~~L~i~~~~~~Dsa~YyCa~~~~~~~~~~~FG~GT~L~V~d  113 (113)
T d1j8he1          71 ERFSLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTVVE  113 (113)
T ss_dssp             TBCEEEESSCCGGGCEEEEEEEECTTSSSCCEEBCCEEEEEES
T ss_pred             cEeeeEeccCccCCcccEEeeEccCCCCCcCEECCCEEEEEeC
Confidence            35679999999999999999876432221    2335677664

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.14  E-value=0.00051  Score=34.10  Aligned_cols=34  Identities=12%  Similarity=0.041  Sum_probs=26.9

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .+...........|.|.+++.+|+|.|-|.+.+.
T Consensus        64 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          64 VRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             TTEEEECSSSEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CcEEEecCCCEEEEEEcccccccCccEEEeecCC
Confidence            3555555556788999999999999999976643

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00022  Score=34.59  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      +.|+|+|....    ...........+.|.+++..|+|.|+|.-
T Consensus        34 f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          34 FLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             EEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             EEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEe
Confidence            45666654221    12222345678999999999999999974

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.12  E-value=0.0015  Score=32.42  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=26.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +++..........|.|.+++.+|+|.|-|...+
T Consensus        65 ~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          65 DRFTGSGSGTDFTLKISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             ceEEeeCCCCEEEEEECccccCcCEeEEEEcCC
Confidence            566666666777899999999999999996543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.11  E-value=0.00024  Score=35.40  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVL   61 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~   61 (68)
                      ....|.|.+++.+|+|.|-|.+......-  .....|.|.
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~~FG~GT~L~V~  110 (115)
T d1i9ea_          71 SSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL  110 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred             CEEEEecccccccccceecccccCCCCCCEECCCEEEEEe
Confidence            34579999999999999999876443221  234677776

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.11  E-value=0.0009  Score=33.09  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .....|.|.+++.+|+|.|-|.+....+
T Consensus        69 ~~~~~L~i~~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          69 SGRSTLYIAASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEESSS
T ss_pred             CCEEEeeeecCCCCCCcEEeEeEecCCC
Confidence            3467899999999999999998875544

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.11  E-value=0.0027  Score=31.36  Aligned_cols=46  Identities=20%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             eEEEeC--CE----EeccCCCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044           2 FDIFCP--RS----QVRSEGNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus         2 ~~W~k~--g~----~l~~~~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +.|++.  |.    .+....++.....  .....|+|.+++.+|+|.|-|.+..
T Consensus        34 ~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          34 TGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            468762  22    2333456655433  2346899999999999999998854

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00079  Score=33.50  Aligned_cols=28  Identities=11%  Similarity=0.101  Sum_probs=22.9

Q ss_pred             EeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          21 NVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        21 ~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      ...+...|+|.+++.+|+|.|-|.++..
T Consensus        72 ~~~~~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          72 LGNESVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             ECSSEEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             CCCCeEEEEECCCCcccCeEEEEEEecc
Confidence            3445667999999999999999987653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.06  E-value=0.0015  Score=31.65  Aligned_cols=51  Identities=16%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC-eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY-NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|++||+++..+...  ...+.++ .+....-.+...+...|+|.+..+....
T Consensus        35 v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~~   88 (97)
T d1uvqb1          35 VRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS   88 (97)
T ss_dssp             EEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCSS
T ss_pred             EEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCCC
Confidence            7899999988643111  1223333 3333333445677789999998876654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.05  E-value=0.00062  Score=33.43  Aligned_cols=48  Identities=6%  Similarity=-0.018  Sum_probs=29.1

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|++||+++..+...  .+...++    .+.|.+..   .+...|+|.+..+.-..
T Consensus        38 v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sl~~   91 (101)
T d1fnga1          38 VTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWGLEE   91 (101)
T ss_dssp             EEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTCSS
T ss_pred             EEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECCCCC
Confidence            7899999998743110  1222232    24566654   34457999998876543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.0026  Score=31.60  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=26.8

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+...  .+...|+|.+++.+|+|.|-|.......
T Consensus        59 gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          59 GKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHPPN   96 (110)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             cEEEEEEECCCCEEEEEECccccCCCEEEEEEEeCCCC
Confidence            35666543  3456799999999999999998755444

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.04  E-value=0.00091  Score=33.24  Aligned_cols=38  Identities=16%  Similarity=0.072  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCccee-----EEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGKDE-----ADVEITVL   61 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~-----~~~~l~V~   61 (68)
                      ....|.|.+++.+|+|.|-|.+....+...     ....|.|.
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~~~~~FG~GT~L~V~  113 (115)
T d1lp9e1          71 SSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVV  113 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEECSSSSCEEEECCCEEEEEE
T ss_pred             CeEEeeccccccccCccceEEEEcCCCCcCeeEECCCEEEEEE
Confidence            345699999999999999998766544222     22466664

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.04  E-value=0.0014  Score=33.04  Aligned_cols=33  Identities=15%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+...  .....|.|.+++.+|+|.|-|.+..
T Consensus        67 ~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          67 GKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             TSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceeEEeeeccccceeecccccccccCcEEEEeeeC
Confidence            46776654  3456799999999999999998654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.03  E-value=0.00049  Score=33.76  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||+++..+...  ...+.++    .+.|.+.   ..+...|+|.+..+.-..
T Consensus        36 v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl~~   89 (100)
T d1muja1          36 ITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCKVEHWGLEE   89 (100)
T ss_dssp             EEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECTTSSS
T ss_pred             EEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEEEEEEEECCCCC
Confidence            7899999988632111  1222232    2345554   456678999999876543

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00028  Score=34.70  Aligned_cols=52  Identities=6%  Similarity=-0.011  Sum_probs=33.7

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      ++|++||.++..+.. ......++    .+.|.|...+-.....|+|.+..+....+
T Consensus        40 v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~   96 (104)
T d1o0va1          40 ITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFE   96 (104)
T ss_dssp             EEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEE
T ss_pred             EEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEE
Confidence            789999999874321 12222332    24578876555556779999999865443

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.01  E-value=0.00077  Score=33.44  Aligned_cols=25  Identities=8%  Similarity=0.066  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ...|.|.+++.+|+|.|-|.+....
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~~~~   96 (115)
T d1j8hd1          72 SFHLTKPSAHMSDAAEYFCAVSESP   96 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEESST
T ss_pred             EEEEeeccccccCCccceeeecCCC
Confidence            4469999999999999999887653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.00  E-value=0.00063  Score=33.27  Aligned_cols=47  Identities=11%  Similarity=0.053  Sum_probs=28.3

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|++||+++..+...  ...+.++    .+.|.+..   .+...|+|.+..+...
T Consensus        38 v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~sl~   90 (99)
T d1uvqa1          38 ITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWGLD   90 (99)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTTSS
T ss_pred             EEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence            7899999998642110  1122232    23466654   4455799999887543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.00  E-value=0.00048  Score=34.16  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEE
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      ...|.|.+++.+|+|.|-|.+.
T Consensus        78 ~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          78 RPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             SCEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEeecccCCCCCcEEEEeEc
Confidence            4579999999999999999764

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.00  E-value=0.00084  Score=33.25  Aligned_cols=38  Identities=13%  Similarity=0.204  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce---eEEEEEEEEc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD---EADVEITVLI   62 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~---~~~~~l~V~~   62 (68)
                      ...|.|.+++.+|+|.|-|.+....+..   ..-..|+|.+
T Consensus        71 ~~~L~I~~~~~~DSa~YyCa~~~~~~~~~~FG~GT~LtV~~  111 (114)
T d1ogae1          71 SFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTE  111 (114)
T ss_dssp             BCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             eEEEEECcCCcCCceeEEEeeccCCCCccEECCCEEEEECC
Confidence            4579999999999999999776544322   3346777763

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.00  E-value=0.00038  Score=34.62  Aligned_cols=38  Identities=16%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce---eEEEEEEEEc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD---EADVEITVLI   62 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~---~~~~~l~V~~   62 (68)
                      ...|.|.+++.+|+|.|-|.+....+..   .....|+|+|
T Consensus        73 ~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~~FG~GT~LtV~e  113 (113)
T d1nfdb1          73 HSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLE  113 (113)
T ss_dssp             CEEEECCSCCGGGCEEECEEEESSSCSCCEECCCEEEEEES
T ss_pred             eEEEEecccCcCCceeEEEEeecCCCCccEECCCeEEEEEC
Confidence            5689999999999999999876544432   2345666654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00037  Score=34.81  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=29.8

Q ss_pred             eCCeEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEEcC
Q psy7044          22 VPYNTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVLIL   63 (68)
Q Consensus        22 ~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~~~   63 (68)
                      ......|.|.+++.+|+|.|-|.+.......     .....|.|.|+
T Consensus        71 ~~~~~~L~I~~l~~~Dsa~YyCa~~~~~~~~~~~~fG~GT~L~V~d~  117 (118)
T d1i8lc_          71 SGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGAQIYVIDP  117 (118)
T ss_dssp             CSSEEEEEECSCCGGGCEEEEEEEEEEESSSCEEEECCCEEEECCCC
T ss_pred             CCCEEEEEeeccccCCCEEEEEeEecccCCCceeEECCCEEEEEEcC
Confidence            3456789999999999999999887543221     33456666664

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0024  Score=30.59  Aligned_cols=51  Identities=8%  Similarity=0.042  Sum_probs=29.5

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CC-eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PY-NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~-~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||+++........... ++ .+....-.+...+...|+|.+.-+....
T Consensus        34 v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl~~   86 (94)
T d1t7va1          34 VHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSLAQ   86 (94)
T ss_dssp             EEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTCSS
T ss_pred             EEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCCCC
Confidence            789999998874322222222 22 2222233334555668999998876543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.95  E-value=0.0018  Score=31.54  Aligned_cols=49  Identities=10%  Similarity=0.049  Sum_probs=30.4

Q ss_pred             eEEEeCCEEeccCCC-E-EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSEGN-V-EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~-~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      ++|++||+.+..+.. . ...+.++    .+.|.|.   .++...|+|.++.+....-
T Consensus        36 v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~~p   90 (98)
T d1hdmb1          36 ITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAPEP   90 (98)
T ss_dssp             EEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSSSC
T ss_pred             EEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCCCC
Confidence            789999999864321 1 1222332    2346654   4455689999999876543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.94  E-value=0.0021  Score=31.82  Aligned_cols=31  Identities=16%  Similarity=0.109  Sum_probs=26.0

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .++..........|.|.+++.+|+|.|-|..
T Consensus        65 ~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          65 DRFSGSGSGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             TTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CcEEeecCCCEEEEEECCccccCCceEEEEe
Confidence            4666666677788999999999999999943

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00072  Score=33.01  Aligned_cols=51  Identities=8%  Similarity=0.043  Sum_probs=32.5

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      |+|++||+++..+...  .....++    .+.|.|...+-.....|+|.+..+....
T Consensus        39 v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   95 (102)
T d1q0xl2          39 VDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS   95 (102)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred             EEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccE
Confidence            7899999988632110  1122222    2457787666566789999999876543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.90  E-value=0.002  Score=31.63  Aligned_cols=38  Identities=24%  Similarity=0.210  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEE
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITV   60 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V   60 (68)
                      .....|.|.+++.+|+|.|-|.+.-.....  .....|+|
T Consensus        69 ~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~~FG~GT~LtV  108 (111)
T d1bd2d1          69 AKHLSLHIVPSQPGDSAVYFCAAMEGAQKLVFGQGTRLTI  108 (111)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEESSTTCEEECCCEEEEE
T ss_pred             CCEEEEEECCCcccccEEEEeeccCCCCCcEeCCCEEEEE
Confidence            346789999999999999999876322221  22346665

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0008  Score=33.84  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      ....|.|.+++.+|+|.|-|.+.
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEe
Confidence            45689999999999999999765

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.87  E-value=0.0013  Score=32.45  Aligned_cols=35  Identities=11%  Similarity=0.092  Sum_probs=26.4

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      +++.....  .....|.|.+++.+|+|.|-|.+.+..
T Consensus        61 ~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~~   97 (111)
T d1cd0a_          61 DRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDAR   97 (111)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CceeEeecCCCCccccccccCCcccCcEEEEeeccCC
Confidence            45555433  446789999999999999999876543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.83  E-value=0.00092  Score=33.04  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce----eEEEEEEEEc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD----EADVEITVLI   62 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~----~~~~~l~V~~   62 (68)
                      ...|.|.+++.+|+|.|-|.+....+..    ..-..|+|+|
T Consensus        71 ~~~L~I~~~~~~DsavYyCA~~~~~~~~~~~FG~GT~LtVle  112 (112)
T d2bnub1          71 DFPLRLLSAAPSQTSVYFCASSYVGNTGELFFGEGSRLTVLE  112 (112)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEES
T ss_pred             EEEEEECCCCHHHCEEEEEeecCCCCCCccEECCCEEEEEeC
Confidence            4579999999999999999776433322    2335666654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.81  E-value=0.001  Score=32.85  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcce-----eEEEEEEEEc
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKD-----EADVEITVLI   62 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-----~~~~~l~V~~   62 (68)
                      ...|.|.+++.+|+|.|-|.+....+..     .....|+|.|
T Consensus        70 ~~~L~i~~~~~~Dsa~YyCA~~~~~~~~~~~~FG~GT~LtV~d  112 (112)
T d2cdeb1          70 HFPLTLESARPSHTSQYLCASSENIGTAYEQYFGPGTRLTVTE  112 (112)
T ss_dssp             BCCEEBSSCCTTTCSEEEEEEECSSSSCCBCCCCCCEEEEEES
T ss_pred             ceEeeeccccccccccEEEEEecCCCCcCeeEECCCeEEEEcC
Confidence            4569999999999999999887554322     2234566654

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.80  E-value=0.0032  Score=31.32  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=25.9

Q ss_pred             CCEEEEEeC-CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVP-YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~-~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .++.+.... ....|.|.+++.+|+|.|-|.+.-..
T Consensus        65 ~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          65 DKFLINHASPTLSTLTVTSAHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             TTEEEEECSSSEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             ccceeeccccccccccccccccccCceEEEEEecCC
Confidence            355554333 35679999999999999999876443

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0038  Score=30.00  Aligned_cols=51  Identities=4%  Similarity=-0.026  Sum_probs=32.2

Q ss_pred             eEEEeCCEEeccCCCEEEEEe-CC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNV-PY----NTKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~-~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      +.|++||.++........... ++    .+.|.+.   ..+...|+|.++.+.......
T Consensus        34 V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          34 LSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             EEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEEE
T ss_pred             EEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcEE
Confidence            789999998874322111111 12    2356665   345679999999988765544

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0017  Score=31.10  Aligned_cols=46  Identities=15%  Similarity=0.085  Sum_probs=24.5

Q ss_pred             eEEEeCCEE-eccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEE
Q psy7044           2 FDIFCPRSQ-VRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITV   60 (68)
Q Consensus         2 ~~W~k~g~~-l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V   60 (68)
                      |.|.||+.. +..        +++  .|+|.--...|+|.|+|.  + .|.-=....|.+
T Consensus        36 I~W~kd~~se~~~--------~Gn--tltV~VkE~~~aGnYTCh--k-~g~~Lnht~lLi   82 (87)
T d3d85d1          36 ITWTLDQSSEVLG--------SGK--TLTIQVKEFGDAGQYTCH--K-GGEVLSHSLLLL   82 (87)
T ss_dssp             CEEEETTCCCCCE--------ESS--EEEEEECSGGGCEEEEEE--E-TTEEEEEEEEEE
T ss_pred             cEEeeCCcccccc--------CCC--EEEEEEEeccCCcceeEe--C-CCcEeeeEEEEE
Confidence            678888643 221        111  244443345799999995  3 354433333333

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.73  E-value=0.00086  Score=33.04  Aligned_cols=32  Identities=9%  Similarity=0.089  Sum_probs=25.7

Q ss_pred             CCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .++..........|.|.+++.+|+|.|-|.+.
T Consensus        60 ~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          60 SRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             TTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             CCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            45555556667889999999999999999654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.67  E-value=0.00068  Score=33.09  Aligned_cols=46  Identities=9%  Similarity=-0.089  Sum_probs=27.7

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      +.|+|+|..... .............+.|..+...|+|.|+|.-...
T Consensus        36 f~L~k~g~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          36 YHLSREGEAHER-RLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             EEEEETTCSSCE-EEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             EEEEECCCcccc-EEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            457777743221 0111122344566788888889999999975543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.56  E-value=0.011  Score=29.42  Aligned_cols=33  Identities=15%  Similarity=0.110  Sum_probs=25.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      +++.+...  .+...|.|.+++.+|+|.|-|....
T Consensus        62 ~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          62 DNFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccceeeccccccceecccccccccCCceeecCccc
Confidence            46655543  3467899999999999999997654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.46  E-value=0.013  Score=28.54  Aligned_cols=53  Identities=9%  Similarity=0.001  Sum_probs=32.7

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      +.|++||..+........ ...++    .+.|.|..   ++...|+|.+.-+.-.......
T Consensus        37 V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l~~p~~~~   94 (103)
T d1hdma1          37 VNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPDRYTAIAY   94 (103)
T ss_dssp             EEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTTTEEEEEE
T ss_pred             EEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCCCCCEEEE
Confidence            789999998864333322 23333    23466654   3455799999988665544443

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.41  E-value=0.0028  Score=30.15  Aligned_cols=47  Identities=4%  Similarity=0.034  Sum_probs=26.8

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +.|.+||..+...........+..+.+.+......|  .|+|.+..+..
T Consensus        32 v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~--~yTC~V~H~~~   78 (86)
T d1hxma2          32 INLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSN--SVTCSVQHDNK   78 (86)
T ss_dssp             EEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTT--TCEEEEEETTE
T ss_pred             EEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCC--EEEEEEEECCc
Confidence            689999998764332222212223344444444444  59999987643

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.0034  Score=30.38  Aligned_cols=60  Identities=13%  Similarity=-0.020  Sum_probs=38.2

Q ss_pred             CeEEEe-CC---EEeccCCCEE--EEEeCC--eEEEEEcCCCCCCCEEEEEEEEcCCcce-eEEEEEEE
Q psy7044           1 MFDIFC-PR---SQVRSEGNVE--IVNVPY--NTKLSIVDILRKNSGVYRIKAENASGKD-EADVEITV   60 (68)
Q Consensus         1 ~~~W~k-~g---~~l~~~~~~~--~~~~~~--~~~l~I~~~~~~d~G~Y~c~a~n~~g~~-~~~~~l~V   60 (68)
                      .++|-| +|   .+|..+....  ....++  .-.|.+..+-.+|.|.|+|.|--..|-. +.++.+.|
T Consensus        35 nVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          35 NVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             CEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            367855 44   3554333322  222233  3479999999999999999998888754 44455544

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0067  Score=29.27  Aligned_cols=26  Identities=15%  Similarity=0.093  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ....+.|.+++..|+|.|+|.-....
T Consensus        58 ~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          58 SRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             CEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             eEEEEEeeecccCCCeEEEEeeEcCC
Confidence            34679999999999999999865443

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.005  Score=30.06  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=24.5

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCC-CCCCCEEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDI-LRKNSGVYRIK   44 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~-~~~d~G~Y~c~   44 (68)
                      .+.|.++++.+.....         ..|...+. +..++|.|.|.
T Consensus        28 ~I~Wkkn~~~i~g~~~---------~~L~L~~FSE~e~SGyY~C~   63 (100)
T d1jbja2          28 NLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCY   63 (100)
T ss_dssp             TCEEEETTEEECSCCC---------SEEEEESCCTTTSCEEEEEE
T ss_pred             ceEEeeccccCCCCCC---------cEEEEccccccccCcceEEe
Confidence            3789999999984321         13555564 45799999995

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00068  Score=33.07  Aligned_cols=50  Identities=12%  Similarity=0.058  Sum_probs=30.6

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      +.|++||.++..+...  .....++    .+.|.|...+-.....|+|.+..+...
T Consensus        39 v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1rzfl2          39 VAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST   94 (102)
T ss_dssp             EEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             EEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            7899999998743110  1122222    245777655444456799999987644

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.29  E-value=0.0036  Score=31.24  Aligned_cols=51  Identities=12%  Similarity=0.063  Sum_probs=30.8

Q ss_pred             eEEEeCCEEeccCCCEE-EEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVE-IVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~-~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||.++....... ....++    .+.|.|...+-.....|+|.+..+.-..
T Consensus        53 v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l~~  108 (119)
T d1igtb3          53 ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  108 (119)
T ss_dssp             EEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             EEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCCCC
Confidence            67999999886432111 122222    2456665444345677999999876543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.27  E-value=0.0046  Score=30.97  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      ....|.|.+++.+|+|.|-|.+.
T Consensus        77 ~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          77 STSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             TEEEEEECSCCGGGCSEEEEEEC
T ss_pred             ccccccccccccccceeEEEEEc
Confidence            45789999999999999999664

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.00067  Score=33.36  Aligned_cols=51  Identities=6%  Similarity=0.019  Sum_probs=33.2

Q ss_pred             eEEEeCCEEeccCCCE---EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV---EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~---~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|++||+++..+...   .....++    .+.|.|...+-.....|+|.+..+....
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          38 VQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             EEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             EEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            7899999998643211   1122222    2468887666667778999999876644

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.23  E-value=0.0048  Score=31.03  Aligned_cols=49  Identities=10%  Similarity=0.048  Sum_probs=29.7

Q ss_pred             eEEEeCCEEeccCCC----EEEE---EeCC----eEEEEEcCCCCCCCE-EEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGN----VEIV---NVPY----NTKLSIVDILRKNSG-VYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~----~~~~---~~~~----~~~l~I~~~~~~d~G-~Y~c~a~n~~g   50 (68)
                      ++|++||+++..+..    ....   ..++    .+.|.|....-.+.| .|+|.++....
T Consensus        39 v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          39 LSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             EEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             EEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEECCC
Confidence            789999998863210    0000   0111    256888766655655 79999987654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.22  E-value=0.00016  Score=35.63  Aligned_cols=51  Identities=6%  Similarity=-0.072  Sum_probs=30.3

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY---NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|.+||+++......  .....+.   .+.|.|...+-.+...|+|.+..+....
T Consensus        39 v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          39 VTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             EEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             EEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            7899999998742110  1111122   2345555444445667999999887654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0033  Score=30.77  Aligned_cols=56  Identities=11%  Similarity=0.052  Sum_probs=33.1

Q ss_pred             eEEEeCCEEeccCCC--EEEEEeCC---eEEEEEcCCCCC--CCEEEEEEEEcCCcceeEEEE
Q psy7044           2 FDIFCPRSQVRSEGN--VEIVNVPY---NTKLSIVDILRK--NSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~--~~~~~~~~---~~~l~I~~~~~~--d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      ++|.++|..+.....  -.....+.   .+.|.|...+-.  ....|+|.+..+.+.....+.
T Consensus        40 v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~~v~  102 (105)
T d1dn0b2          40 FSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVP  102 (105)
T ss_dssp             EEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEE
T ss_pred             EEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEeEEe
Confidence            789999976653210  01122222   246777755543  235899999999887665543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.15  E-value=0.0015  Score=32.25  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          23 PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        23 ~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .....|.|.+++.+|+|.|-|.+.-
T Consensus        66 ~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          66 RKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             SSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             CCeeEEEEeecccccceeEeeeEec
Confidence            3456799999999999999997654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.0039  Score=30.48  Aligned_cols=50  Identities=8%  Similarity=0.034  Sum_probs=31.0

Q ss_pred             eEEEeCCEEeccCCCEEEE----EeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEIV----NVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~----~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||+++..+. ....    ..++    .+.|.|...+-.....|+|.+..+....
T Consensus        39 v~W~~ng~~~~~~~-~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          39 VKWKIDGSERQNGV-LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             EEEEETTEEECTTE-EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EEEEECCEEccCCe-EeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            78999999986321 1111    1111    2457777555445678999999766543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.01  E-value=0.0012  Score=31.90  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044          24 YNTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus        24 ~~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ....|.|.+++.+|+|.|-|.+....|.
T Consensus        62 ~~~~L~I~~~~~~Dsa~YyCA~~~~~g~   89 (96)
T d1ymmd1          62 KSSSLLITASRAADTASYFCATDTTSGT   89 (96)
T ss_dssp             TBCCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred             eecccCcCCCCcccCEEEeEeEecCCCC
Confidence            3457999999999999999988766654

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.00096  Score=32.51  Aligned_cols=50  Identities=8%  Similarity=0.020  Sum_probs=30.5

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|++||+++..... ......++    .+.|.|...+-.....|+|.+..+...
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~l~   91 (101)
T d1cqka_          37 VEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH   91 (101)
T ss_dssp             EEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            789999998763111 01122222    345777655545567899999877543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0098  Score=28.94  Aligned_cols=52  Identities=6%  Similarity=0.031  Sum_probs=31.7

Q ss_pred             eEEEeCCEEeccCCCEEE--E-EeCC----eEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSEGNVEI--V-NVPY----NTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~--~-~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      ++|++||.++........  . ..++    .+.|.|....-.....|+|.+..+....-
T Consensus        39 v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~~p   97 (107)
T d1c5cl2          39 VQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP   97 (107)
T ss_dssp             EEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             EEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCCCc
Confidence            789999998763211110  0 1111    24677876554556689999998776543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.003  Score=30.39  Aligned_cols=48  Identities=2%  Similarity=-0.083  Sum_probs=28.1

Q ss_pred             CeEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           1 MFDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      .++|++||+++..+...  ...+.++    .+.|.+.   ..+...|+|.++-+...
T Consensus        33 ~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~~L~   86 (95)
T d1k5na1          33 TLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHEGLP   86 (95)
T ss_dssp             EEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTTCS
T ss_pred             EEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEECcCC
Confidence            37899999998753211  1222222    1235554   34445799999876543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0031  Score=30.80  Aligned_cols=49  Identities=6%  Similarity=-0.029  Sum_probs=31.0

Q ss_pred             eEEEeCCEEeccCCCEEE--E----EeCC----eEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNVEI--V----NVPY----NTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~--~----~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +.|++||+++..+.....  .    ..++    .+.|.|....-.....|+|.+..+..
T Consensus        39 v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~sl   97 (108)
T d1ow0a2          39 VRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL   97 (108)
T ss_dssp             EEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             EEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCCC
Confidence            789999999874322210  0    0111    24577775555557789999988764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0035  Score=29.78  Aligned_cols=46  Identities=2%  Similarity=-0.191  Sum_probs=26.9

Q ss_pred             eEEEeCCEEeccCCCE--EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGNV--EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~--~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      ++|++||+.+..+...  ...+.++    .+.|.|...+   ...|+|.+.-+.-
T Consensus        34 v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~---~~~ytC~V~H~~L   85 (89)
T d2mhaa1          34 LTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGK---EQYYTCHVYHQGL   85 (89)
T ss_dssp             EEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEESST---TTTCEEEEECSSC
T ss_pred             EEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecCcC---CCEEEEEEEECCC
Confidence            6899999998743221  1122222    2346666433   3469999876543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.66  E-value=0.0057  Score=29.94  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      ...|.|.+++.+|+|.|-|.+....
T Consensus        71 ~~~L~i~~~~~~Dsa~YyCA~~~~~   95 (110)
T d1ac6a_          71 SFHLQKASVQESDSAVYYCALSGGN   95 (110)
T ss_dssp             BCCEEEEEECGGGCEEEEEEEEETT
T ss_pred             EEeeeecCcCcCCCcccceeecCCC
Confidence            4679999999999999999876543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=95.55  E-value=0.0084  Score=28.62  Aligned_cols=48  Identities=4%  Similarity=-0.015  Sum_probs=27.8

Q ss_pred             CeEEEeCCEEeccCCCE--EE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           1 MFDIFCPRSQVRSEGNV--EI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~--~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      .++|++||..+..+...  .. .+.++    .+.|.+.   ..+...|+|.++-+...
T Consensus        33 ~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~~~   87 (94)
T d1hyrc1          33 TLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSGNH   87 (94)
T ss_dssp             EEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETTEE
T ss_pred             EEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECCCC
Confidence            37899999998754321  11 22222    2335555   34445799999876543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=95.41  E-value=0.0026  Score=30.75  Aligned_cols=48  Identities=8%  Similarity=0.068  Sum_probs=29.0

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|++||..+...... ...+.++    .+.|.|..   .|...|+|.+..+....
T Consensus        35 v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sL~~   87 (96)
T d2h26a1          35 VMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSSLEG   87 (96)
T ss_dssp             EEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGGGTT
T ss_pred             EEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCCCCC
Confidence            7899999987642111 1222232    23466664   44557999998877543

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.014  Score=27.84  Aligned_cols=50  Identities=10%  Similarity=0.147  Sum_probs=31.7

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEc
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLI   62 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~   62 (68)
                      .+.|+++|..+.....       ...+|-+=+.-.+-.|.|.|.+.     ...+..|.|..
T Consensus        35 ~i~W~kdg~~i~~~~~-------~~ktlnLG~~~~DPRGiY~C~g~-----~~~s~~LQVYY   84 (86)
T d1jbja1          35 TIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGA-----KETSNPLQVYY   84 (86)
T ss_dssp             CEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEES-----SCEEEEEEEEC
T ss_pred             EEEEecCCceeccccc-------ccceeecCCcccCCCcceEcCCC-----cccCccEEEEE
Confidence            3789999998763211       11135566677888999999643     33334566654

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0022  Score=31.09  Aligned_cols=51  Identities=6%  Similarity=0.006  Sum_probs=31.1

Q ss_pred             CeEEEeCCEEeccCCC-EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           1 MFDIFCPRSQVRSEGN-VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~-~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      .++|++||.+...... ......++    .+.|.|........-.|+|.+..+...
T Consensus        37 ~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l~   92 (102)
T d1l6xa2          37 AVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH   92 (102)
T ss_dssp             EEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCCC
Confidence            3789999998763110 01122222    345777765555566799999987653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.36  E-value=0.0072  Score=29.51  Aligned_cols=50  Identities=8%  Similarity=-0.044  Sum_probs=29.5

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCccee
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKDE   53 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~   53 (68)
                      ++|++||..+...... .....++    .+.|.|......  ..|+|.+..+.....
T Consensus        43 v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~~ytC~V~H~s~~~~   97 (107)
T d1hxmb2          43 IHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLD--KEHRCIVRHENNKNG   97 (107)
T ss_dssp             EEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGG--SCEEEEEEETTSGGG
T ss_pred             EEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCC--CeEEEEEEECCCCCC
Confidence            7899999877632111 0111222    245777654432  369999998776543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0083  Score=28.82  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      ..+.|.+++..|+|.|+|.-...
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1          57 GQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEEecCHHHCCeEEEEEeCC
Confidence            47999999999999999986543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.046  Score=26.27  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             EEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044          28 LSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus        28 l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      ++|.+....+.|.|.|.|... |..
T Consensus        61 f~I~~~~~~~~g~y~C~a~~~-g~~   84 (95)
T d1fltx_          61 FIISNATYKEIGLLTCEATVN-GHL   84 (95)
T ss_dssp             EEESSCCGGGCEEEEEEEEET-TEE
T ss_pred             EEEeCCCcccCeEEEEEEEEC-CEE
Confidence            789999999999999999755 433

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0074  Score=28.51  Aligned_cols=37  Identities=14%  Similarity=0.192  Sum_probs=25.1

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      ++|+++|..+..      - .....+|-+=+.-.+-.|.|.|.+
T Consensus        31 i~W~kdg~~i~~------~-~~~~ktlnLG~~~~DPRG~Y~C~~   67 (81)
T d1sy6a1          31 ITWFKDGKMIGF------L-TEDKKKWNLGSNAKDPRGMYQCKG   67 (81)
T ss_dssp             EEEEETTEEEEE------E-ESSCCCEEEEEGGGCCEEEEEEES
T ss_pred             EEEecCCeEeec------c-cCCcceeecCCcccCCCcceEcCC
Confidence            689999987652      0 111224566667788899999964

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.04  E-value=0.029  Score=28.17  Aligned_cols=36  Identities=11%  Similarity=0.242  Sum_probs=26.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|......+
T Consensus        66 gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~~~~  103 (117)
T d1iqdb1          66 GSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPDPDA  103 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSS
T ss_pred             eeeeeecccccceEEEeecccCcCcceEEEEeEcCCCe
Confidence            566666543  344699999999999999997655443

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.02  E-value=0.0032  Score=30.54  Aligned_cols=49  Identities=8%  Similarity=-0.041  Sum_probs=28.7

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      ++|++||.+...... ......++    .+.|.|...+-...-.|+|.+..+..
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~l   91 (102)
T d1igtb4          38 VEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL   91 (102)
T ss_dssp             EEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             EEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            789999987652110 00111222    24577765544456679999987664

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.00  E-value=0.0019  Score=31.42  Aligned_cols=51  Identities=8%  Similarity=-0.050  Sum_probs=30.6

Q ss_pred             eEEEeCCEEecc--CCCEEEEEeCC---eEEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044           2 FDIFCPRSQVRS--EGNVEIVNVPY---NTKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus         2 ~~W~k~g~~l~~--~~~~~~~~~~~---~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      |.|.++|.....  ....  ...+.   .+.|.|...... .|.|+|.+..+.+.....
T Consensus        39 v~W~~~~~~~~~~~~~~~--~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   94 (101)
T d1kcvh2          39 VAWNEGALSSGVLTVSAV--LQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTAAD   94 (101)
T ss_dssp             EEEGGGTCCTTEEECCCE--EETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEEEE
T ss_pred             EEEecCCCcccceeeeee--cCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCeeeE
Confidence            689888854321  1111  11111   356888766653 578999999887765443

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0063  Score=28.27  Aligned_cols=49  Identities=14%  Similarity=0.180  Sum_probs=24.8

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVEI   58 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l   58 (68)
                      .+.|++++..+..+.         ...|-+=+.-.+-.|.|.|.+.......+.+.+|
T Consensus        19 si~W~k~~~~~~~~~---------~k~lnLG~~~~DPRG~Y~C~~~e~~~~k~~~lQV   67 (74)
T d1xiwb_          19 SITWVEGTVGTLLSD---------ITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQV   67 (74)
T ss_dssp             CEEEEEECCCEEEGG---------GTEEEEEEGGGCCEEEEEEC--------CEEEEE
T ss_pred             eeEEecCCcccccCC---------ccEeecCCcccCCCcceEeCCcccccccCccEEE
Confidence            368988864322111         1235566677888999999766444444444443

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.99  E-value=0.0033  Score=30.49  Aligned_cols=50  Identities=6%  Similarity=-0.014  Sum_probs=30.7

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|++||+++...... .....++    .+.|.|...+-.....|+|.+.-+...
T Consensus        38 v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~~   92 (102)
T d1i1ca2          38 TEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE   92 (102)
T ss_dssp             EEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             EEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCCC
Confidence            7899999987531100 0111222    245777766556667899999887554

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.80  E-value=0.0022  Score=31.24  Aligned_cols=29  Identities=7%  Similarity=0.133  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcceeEE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGKDEAD   55 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~   55 (68)
                      +.|.|...+-. .+.|+|.+..+.+.....
T Consensus        66 S~L~v~~~~w~-~~~ytC~V~H~~~~~~v~   94 (102)
T d1mjuh2          66 SSVTVTSSTWP-SQSITCNVAHPASSTKVD   94 (102)
T ss_dssp             EEEEECTTTTT-TSCCEEEEEEGGGTEEEE
T ss_pred             EEEEEehhHcC-CceEEEEEEECCCCEEEE
Confidence            56888877663 568999999987765443

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.77  E-value=0.043  Score=26.22  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      ...+.|.+++..|+|.|+|.-...
T Consensus        56 ~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          56 KANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             EEEEEEcccCcccCeEEEEEEEcC
Confidence            356999999999999999986543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.035  Score=26.60  Aligned_cols=43  Identities=14%  Similarity=0.139  Sum_probs=28.3

Q ss_pred             eEEEeCCEEeccCCC-EEEEEeCCeEEEEEcCCCC-CCCEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGN-VEIVNVPYNTKLSIVDILR-KNSGVYRIKAE   46 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~-~~~~~~~~~~~l~I~~~~~-~d~G~Y~c~a~   46 (68)
                      +.|.+++..+..... ..+....  ..|...+.+. .++|.|.|.+.
T Consensus        25 i~W~~n~~~~~~~~~~~~~~~~~--~~l~L~dfSe~e~sGyY~C~~~   69 (91)
T d1xiwa_          25 ILWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSELEQSGYYVCYPR   69 (91)
T ss_dssp             EEEEETTEEESSSCSCTTEEEET--TEEEETTCCHHHHCEEEEEEET
T ss_pred             eeeeeccccccCCCccccccccc--ceEEecccCccccCceEEEEcC
Confidence            789999999874321 1111111  2477788766 79999999874

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.02  Score=27.56  Aligned_cols=51  Identities=4%  Similarity=-0.010  Sum_probs=30.4

Q ss_pred             eEEEeCCEEeccCC-CEEEEEeC---CeEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEG-NVEIVNVP---YNTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-~~~~~~~~---~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|.+||..+.... .......+   ..+.|.|...+-...-.|+|.+.......
T Consensus        39 v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~~   93 (102)
T d2fbjh2          39 VTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV   93 (102)
T ss_dssp             EEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCCC
Confidence            56888886543110 00111111   13568888887777788999998766543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.14  E-value=0.1  Score=26.00  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=25.3

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|...-.
T Consensus        65 gR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          65 GRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARNLI  100 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ecceeecccchhhhhccccccccccceEEEeeeecC
Confidence            566665432  3456999999999999999965433

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.13  E-value=0.098  Score=25.51  Aligned_cols=36  Identities=11%  Similarity=0.125  Sum_probs=22.4

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+..+  .+...|.|.+++.+|++.|-|......+
T Consensus        53 ~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~~~~~   90 (103)
T d1oari_          53 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARMWYYG   90 (103)
T ss_dssp             TTEEEEC----CEEEEEECCC---CCSEEEEEEEECSS
T ss_pred             eceEEeccccccEEEeeeeeccccccEEEEeEEECCCC
Confidence            46655432  3344699999999999999997655544

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.09  E-value=0.0064  Score=29.46  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=28.3

Q ss_pred             eEEEeCCEEeccCC-CEEEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044           2 FDIFCPRSQVRSEG-NVEIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus         2 ~~W~k~g~~l~~~~-~~~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      ++|++||.++.... .......++    .+.|.|...+-...-.|+|.+..+.-.
T Consensus        37 v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~l~   91 (103)
T d1i1ca1          37 FSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP   91 (103)
T ss_dssp             EEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             EEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCCCC
Confidence            67999998876321 001122222    234655543333455699999987654

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.97  E-value=0.03  Score=28.10  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=24.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|+|.+++.+|++.|-|.+.
T Consensus        66 gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          66 GKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEEEEECGGGCEEEEEEEC
T ss_pred             ccceeecccccceeeeeecccCccceeEEEEEEe
Confidence            466665433  34469999999999999999654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.96  E-value=0.073  Score=26.52  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=23.3

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|..
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEec
Confidence            466665433  3346999999999999999943

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.011  Score=28.56  Aligned_cols=51  Identities=14%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             eEEEeCCEEeccCCCE-EEEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNV-EIVNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~-~~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|.++|.++...... .....++    .+.|.|....-...-.|+|.+..+....
T Consensus        39 ~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   94 (105)
T d1l6xa1          39 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (105)
T ss_dssp             EEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             EEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCCCC
Confidence            5799999988642110 1111222    2356666554345568999999887653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.71  E-value=0.07  Score=27.19  Aligned_cols=33  Identities=9%  Similarity=0.116  Sum_probs=24.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|....
T Consensus        67 ~Rftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          67 TRLTITKDTSKNQVVLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecceecccccccEEEcccccCCcccceEEEEEEec
Confidence            466665433  345699999999999999996553

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.66  E-value=0.087  Score=26.57  Aligned_cols=34  Identities=12%  Similarity=0.176  Sum_probs=25.0

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+  .+.-.|.|.+++.+|++.|-|.....
T Consensus        66 gR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          66 GRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHEY  101 (123)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEEEecCcccccccceeeeccCcccceeEEecCC
Confidence            46666543  23446999999999999999966543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.65  E-value=0.073  Score=26.94  Aligned_cols=33  Identities=15%  Similarity=0.228  Sum_probs=24.5

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|....
T Consensus        65 gR~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          65 GRLTISLDNAKNTLYLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             TTEEEEEEC--CEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eeEEEEecCCceEEEEEEeccCcccCceeEEEeec
Confidence            467665443  234599999999999999996543

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=93.62  E-value=0.012  Score=28.37  Aligned_cols=46  Identities=4%  Similarity=-0.015  Sum_probs=24.7

Q ss_pred             eEEEeCCEEecc----CCC-EE-EEEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044           2 FDIFCPRSQVRS----EGN-VE-IVNVPY----NTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus         2 ~~W~k~g~~l~~----~~~-~~-~~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      +.|++||+++..    +.. .. ..+.++    .+.|.|.   ..+-..|+|.++-...
T Consensus        33 v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          33 IRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVD---GGLEHVYSCRVKGIAT   88 (98)
T ss_dssp             EEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEEC---TTCGGGEEEEEEEGGG
T ss_pred             EEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEEC---CCCCCEEEEEEEeCCC
Confidence            789999876531    110 00 111222    2346665   3445679999875544

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.046  Score=26.18  Aligned_cols=51  Identities=4%  Similarity=-0.077  Sum_probs=29.6

Q ss_pred             eEEEeCCEEeccCCCEEE-EEeCC----eEEEEEcCCCCCCCEEEEEEEEcCCcce
Q psy7044           2 FDIFCPRSQVRSEGNVEI-VNVPY----NTKLSIVDILRKNSGVYRIKAENASGKD   52 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~-~~~~~----~~~l~I~~~~~~d~G~Y~c~a~n~~g~~   52 (68)
                      +.|++++.+......... ...++    .+.|.|...+-.....|+|.+.......
T Consensus        37 ~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~l~~   92 (103)
T d1fp5a1          37 LTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR   92 (103)
T ss_dssp             EEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSSCSS
T ss_pred             EEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCC
Confidence            468888877653221111 22222    3456665444445778999999876544

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=93.55  E-value=0.16  Score=25.54  Aligned_cols=32  Identities=9%  Similarity=0.179  Sum_probs=24.6

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|...
T Consensus        67 ~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          67 SRLTVSKDTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EeeEEecccCCcEEEcceecccccccceEEEEEe
Confidence            467665543  34579999999999999999643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.34  E-value=0.19  Score=25.10  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+  .+...|.|.+++.+|++.|-|.+.-.
T Consensus        64 gR~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~~~   99 (119)
T d1kxvc_          64 GRFTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSLR   99 (119)
T ss_dssp             TTEEEEECSSTTEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             cceEEecccCCcceecccccCCcCCcceEeeeeccc
Confidence            46766543  23457999999999999999965543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.33  E-value=0.11  Score=25.97  Aligned_cols=36  Identities=11%  Similarity=0.121  Sum_probs=26.2

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|......+
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYG  103 (118)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             eeEEEeecCccceeeccccccCCCcceEEEeeEecCCC
Confidence            466665432  334699999999999999997665444

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.24  E-value=0.18  Score=25.29  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=24.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|...
T Consensus        66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeeEEeccccceeEEeeeeecccccceEEEEEEe
Confidence            467666543  34579999999999999999654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.23  E-value=0.099  Score=26.32  Aligned_cols=33  Identities=12%  Similarity=0.259  Sum_probs=24.9

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|...-
T Consensus        67 gR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEET
T ss_pred             EeeEEeccCCcceeeecccccCCCcceEEEEeecC
Confidence            566666543  234699999999999999996653

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.21  E-value=0.077  Score=26.58  Aligned_cols=33  Identities=9%  Similarity=0.166  Sum_probs=24.4

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+  .+...|.|.+++.+|++.|-|....
T Consensus        67 gRft~s~d~s~~~~~L~i~~l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          67 SRLTITKDASKKQVVLTLTNLDPVDTATYYCARTS  101 (120)
T ss_dssp             SSEEEECCTTTTEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             cccceecccccceeeeeEEeeeeccceEEeeEecC
Confidence            46665433  2345799999999999999996543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=92.81  E-value=0.25  Score=24.63  Aligned_cols=33  Identities=12%  Similarity=0.247  Sum_probs=24.6

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|....
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSREN  101 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEecC
Confidence            466665432  345699999999999999996543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.71  E-value=0.26  Score=24.52  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=26.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+..+  .+...|.+.+++.+|++.|-|......+
T Consensus        66 gR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~~~~~  103 (117)
T d1jpth1          66 DRATISADNSKNTAYLQMNSLRAEDTAVYYCARDTAAY  103 (117)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eeEEEEeccccceEEecccccCCCCceEEEEeecCCCc
Confidence            46666544  3345699999999999999997655443

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.64  E-value=0.11  Score=26.07  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=24.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+  .+...|.|.+++.+|++.|-|....
T Consensus        66 gR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEB
T ss_pred             cceEEEeecCCceeeecccccCcCcceEEEeEeec
Confidence            46666543  2345699999999999999997543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=92.64  E-value=0.28  Score=24.70  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=25.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|.....
T Consensus        66 gR~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr~~~  101 (126)
T d1dfbh1          66 GRFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGRD  101 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             cceEEeccCCCcEEEeeeeeeccCcceEEEEEeccC
Confidence            466665543  3456999999999999999976543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=92.52  E-value=0.14  Score=25.92  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=25.9

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+..+.  +..-|.|.+++.+|++.|-|......
T Consensus        66 gR~Tis~D~s~~t~yL~~~~L~~eDTA~YYCAr~~~~  102 (127)
T d2fb4h1          66 GRFTISRNDSKNTLFLQMDSLRPEDTGVYFCARDGGH  102 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             ceEEEeccCCccEEEeeeeeeeecceeEEEEEEecCC
Confidence            466665543  34569999999999999999765433

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=92.38  E-value=0.18  Score=25.76  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=30.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCcce--eEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASGKD--EADVEITVL   61 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~--~~~~~l~V~   61 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|......+.+  ..-..|+|.
T Consensus        66 gRfTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~~~~~~d~WGqGT~VTVs  116 (135)
T d1ieha_          66 GRFTISRDNAKNTLYLQMNSLKSEDTAVYYCAKYSGGALDAWGQGTQVTVS  116 (135)
T ss_dssp             TTEEEEECTTTCCEEEEEESCCSSSCEEEEEEEBSSSSBCCCSCCEEEEEC
T ss_pred             EeEEEeccCCCceeEecEeeeCcccceeeEEEEecCCccceeCCCEEEEEE
Confidence            466665543  23469999999999999999765444332  233455553

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.28  E-value=0.14  Score=25.56  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=24.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+  .+...|.|.+++.+|++.|-|....
T Consensus        65 gRftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          65 GKATLTSDKSSNTAYLELSSLTSEDSAVYYCARSS   99 (117)
T ss_dssp             TCEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEEeccCceeEeecccccCCCcceEEEEeecc
Confidence            46666543  3345699999999999999996443

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.21  E-value=0.18  Score=25.57  Aligned_cols=33  Identities=12%  Similarity=0.253  Sum_probs=25.2

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +...|.+.+++.+|++.|-|....
T Consensus        65 gR~tis~D~s~~tv~L~~~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          65 GRVTFTADQATSTAYMELTNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeEEeccCCccEEEEEeeccCCCCcEEEEEEeec
Confidence            477666543  345699999999999999997654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=92.19  E-value=0.25  Score=24.81  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=25.2

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+  .+...|.+.+++.+|++.|-|....
T Consensus        65 gR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          65 GRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATR   99 (124)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cccEEecccccceeeceeccccCCcceEEEEeecc
Confidence            56766544  3445699999999999999996643

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.18  E-value=0.16  Score=25.35  Aligned_cols=32  Identities=13%  Similarity=0.195  Sum_probs=24.3

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|...
T Consensus        65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceeeccccccccCcceEEEEecc
Confidence            467665543  34579999999999999999543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.93  E-value=0.097  Score=26.04  Aligned_cols=30  Identities=17%  Similarity=0.239  Sum_probs=23.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIK   44 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~   44 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|.
T Consensus        66 gRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA   97 (114)
T d1indh1          66 GRFTISRDNAQNNLYLQLNSLRSEDTALYFCA   97 (114)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeEEEeccCccceeeeeeeeeccCcccEEEEC
Confidence            466665443  344699999999999999995

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=91.74  E-value=0.21  Score=24.96  Aligned_cols=30  Identities=17%  Similarity=0.207  Sum_probs=23.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIK   44 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~   44 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|.
T Consensus        65 gRftiS~D~s~nt~~L~i~~l~~eDtA~YYCA   96 (120)
T d1dn0b1          65 SRVTISVDTSKNQFSLKLSSVTAADTAVYYCA   96 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeeEEeccCchheecccccccccccccEEEEE
Confidence            467766532  345699999999999999994

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.70  E-value=0.13  Score=25.97  Aligned_cols=33  Identities=15%  Similarity=0.284  Sum_probs=24.8

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+  .+...|.|.+++.+|++.|-|.+.-
T Consensus        71 gR~tis~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          71 GRFAVSRDNAKNTVNLQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             cceeEeccCCceEEEEeeecccccceeEEEEEEEe
Confidence            36666543  3445699999999999999997653

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.68  E-value=0.15  Score=25.45  Aligned_cols=34  Identities=9%  Similarity=0.092  Sum_probs=24.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-| |....
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYC-Ar~~~  101 (119)
T d1eapb1          66 VKATLTADQSSSTAYMQLNSLTSEDSAVYFC-KRSYY  101 (119)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEE-EECCC
T ss_pred             cceEEEcccCcceEEeeeecccCCcceEEEE-EEecc
Confidence            466665432  34569999999999999999 44333

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=91.64  E-value=0.36  Score=23.71  Aligned_cols=32  Identities=13%  Similarity=0.171  Sum_probs=24.3

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|...
T Consensus        68 gR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          68 DRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceeccccccceeEecccCCCHhHCEEEEEEEc
Confidence            367666543  34569999999999999999643

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.58  E-value=0.014  Score=28.20  Aligned_cols=28  Identities=4%  Similarity=0.098  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCCCEEEEEEEEcCCcceeE
Q psy7044          26 TKLSIVDILRKNSGVYRIKAENASGKDEA   54 (68)
Q Consensus        26 ~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~   54 (68)
                      +.|.|...... ...|+|.+..+.+....
T Consensus        67 S~L~v~~~~w~-~~~ytC~V~H~~~~~~v   94 (103)
T d1c5ch2          67 SVVTVPSSSLG-TQTYICNVNHKPSNTKV   94 (103)
T ss_dssp             EEEEEEGGGGG-TCCCEEEEEEGGGTEEE
T ss_pred             EEEEECccccC-CCeEEEEEEeCCCCEEE
Confidence            46888765543 46799999998876543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.57  E-value=0.4  Score=24.17  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+.  +.-.|.+.+++.+|++.|-|.....
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          66 GRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYE  101 (128)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEEeecCCCceEEeeeeeccccCceEEEEeEEec
Confidence            577776543  3456999999999999999976543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=91.50  E-value=0.3  Score=24.27  Aligned_cols=33  Identities=12%  Similarity=0.142  Sum_probs=24.4

Q ss_pred             CEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          16 NVEIVNV--PYNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        16 ~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      |+.+..+  .+.-.|.|.+++.+|++.|-|.....
T Consensus        66 R~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~~~  100 (116)
T d1a2yb_          66 RLSISKDNSKSQVFLKMNSLHTDDTARYYCARERD  100 (116)
T ss_dssp             GEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             cceEeccCCCceEEcceeeeeeccceEEEEEEeCC
Confidence            5666543  23456999999999999999975543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.44  E-value=0.28  Score=24.38  Aligned_cols=31  Identities=13%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|..
T Consensus        66 ~R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          66 AKTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence            366665443  3456999999999999999954

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.40  E-value=0.38  Score=23.89  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=23.9

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|..
T Consensus        66 gRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          66 GKATLTADRSSSIVYLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeccCccceeeecccccCCCcceEEEEee
Confidence            477666543  3456999999999999999954

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=91.33  E-value=0.23  Score=24.36  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=23.5

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|..
T Consensus        58 gR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          58 GRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             TCEEEEECTTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred             cceEEecCCceeEEEEeecCCCcccceeeeEec
Confidence            466665432  3456999999999999999954

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.28  E-value=0.42  Score=23.86  Aligned_cols=34  Identities=12%  Similarity=0.214  Sum_probs=25.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+.  +..-|.|.+++.+|++.|-|.....
T Consensus        66 gRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~~~  101 (122)
T d1bz7b1          66 GRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGT  101 (122)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             eeEEEeccCCccEeEeeeeeecccCceEEEeecCCC
Confidence            466665442  3456999999999999999976543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=91.23  E-value=0.23  Score=24.81  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=24.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|....
T Consensus        66 gR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          66 DKATLTVDRSSTTAYIELVRLTSNDSAVYYCARED  100 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             hcceeeeccCcceEEccccccCCCcceEEEeeecC
Confidence            466665433  344699999999999999997653

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.17  E-value=0.45  Score=23.90  Aligned_cols=33  Identities=9%  Similarity=0.156  Sum_probs=25.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|....
T Consensus        66 gRftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             cceEEeccCccceEeeeeeccCCccceeEeEeecc
Confidence            467665443  345699999999999999997654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.05  E-value=0.16  Score=25.34  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=24.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|...
T Consensus        66 gRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          66 GRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            477665543  34569999999999999999654

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.05  E-value=0.13  Score=25.74  Aligned_cols=30  Identities=13%  Similarity=0.172  Sum_probs=23.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIK   44 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~   44 (68)
                      .|+.+..+.  +.-.|.+.+++.+|++.|-|.
T Consensus        66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          66 GRFAFSLETSASTAYLQINSLKNEDTATYFCA   97 (118)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeeEEEecCCceeEEeeeeecccCcceEEEEe
Confidence            466665433  345699999999999999994

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=90.93  E-value=0.18  Score=25.35  Aligned_cols=32  Identities=6%  Similarity=0.196  Sum_probs=23.6

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+  .+.-.|.|.+++.+|++.|-|...
T Consensus        67 ~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          67 SRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEccccccceeEEcceeecccccceEEeeccc
Confidence            35655443  234569999999999999999654

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=90.68  E-value=0.45  Score=24.07  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=24.3

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+  .+.-.|.+.+++.+|++.|-|...
T Consensus        68 gR~tiS~D~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          68 GRFTISRDDSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEecccccceeecceeccccCCceEEEEecc
Confidence            46666544  344569999999999999999654

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.61  E-value=0.22  Score=25.25  Aligned_cols=32  Identities=13%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +.-.|.+.+++.+|++.|-|...
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          66 GRVSITADESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceEEeeeeecCCCccEEEEEEEe
Confidence            466665443  33459999999999999999643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=90.56  E-value=0.12  Score=26.00  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=23.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+.  +.-.|.|.+++.+|++.|-|..
T Consensus        66 gRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr   98 (121)
T d2p49b1          66 GRFTISRDKGKNTVYLQMDSLKPEDTATYYCAA   98 (121)
T ss_dssp             TTEEEECTTSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EeEEEeecCCceEEEEEeeeccccceeEEeeec
Confidence            366665432  2346999999999999999964

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.43  E-value=0.54  Score=23.64  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=25.6

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+.  +...|.+.+++.+|++.|-|.....
T Consensus        66 gR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          66 GRITITADRSTSTAYLELNSLRPEDTAVYYCAREGT  101 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             eeEEEeccCccceEeeeecccCcccceEEEEeeccc
Confidence            466665443  3456999999999999999976543

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.32  E-value=0.57  Score=23.74  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=26.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENAS   49 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~   49 (68)
                      .|+.+..+.  +...|.+.+++.+|++.|-|......
T Consensus        65 gR~tis~D~s~~t~~L~~~~L~~eDtA~YYCAr~~~~  101 (133)
T d1rzfh1          65 GRVTISADESTRTVYLHLRGLRSDDTAVYYCASNSIA  101 (133)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEECC
T ss_pred             ccEEEEeccCcceeEEeeccCCCCCCEEEEeeeccCC
Confidence            577766543  34579999999999999999655443

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.31  E-value=0.13  Score=25.69  Aligned_cols=32  Identities=13%  Similarity=0.132  Sum_probs=23.9

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+  .+.-.|.+.+++.+|++.|-|...
T Consensus        66 gR~tisrD~s~~t~~L~~~sL~~eDTAvYYCAr~   99 (117)
T d1b2wh1          66 DRFTISRDKSKNTLYLQMNSLRPEDTAVYYCARG   99 (117)
T ss_dssp             TTEEEECCTTTTEEEEEECSCCGGGCEEEECCEE
T ss_pred             eeEEEEeccccceEEeeeccccCCcceEEEEccc
Confidence            46666543  334569999999999999999644

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.07  E-value=0.34  Score=24.31  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=25.1

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|....
T Consensus        66 ~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          66 DKAILTADRSSNTAFMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeEEecccCcceEeeeeeccCcccceEEEEeeeC
Confidence            467665443  345699999999999999996553

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.81  E-value=0.5  Score=23.73  Aligned_cols=31  Identities=13%  Similarity=0.216  Sum_probs=24.2

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+  .+...|.+.+++.+|++.|-|..
T Consensus        65 gRfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          65 GKATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            57766544  34557999999999999999964

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.67  E-value=0.57  Score=23.47  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=24.6

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +.-.|.+.+++.+|++.|-|...
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          66 GKATLTADKSSSTAYMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEC
T ss_pred             eeEEEEccCCcceEEecccccCCCcceEEEeccc
Confidence            477665543  34569999999999999999643

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.52  E-value=0.23  Score=24.69  Aligned_cols=31  Identities=10%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+.  +...|.+.+++.+|++.|-|..
T Consensus        66 gR~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeeEecccccceeEecccccCCCCceEEEEcc
Confidence            467765443  3456999999999999999953

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.91  E-value=0.21  Score=24.91  Aligned_cols=31  Identities=10%  Similarity=0.241  Sum_probs=23.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+  .+...|.|.+++.+|++.|-|..
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          66 GKATMTVDKSSSTAYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEecccCcceEeecccccccCcceeeeEEE
Confidence            46666543  33456999999999999999943

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.90  E-value=0.21  Score=24.83  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=24.7

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENASG   50 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~~g   50 (68)
                      .|+.+..+.  +.-.|.+.+++.+|++.|-|......+
T Consensus        65 gR~tis~D~s~~tv~L~~~~L~~eDTAvYyCAr~~~~~  102 (116)
T d1fn4b1          65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGG  102 (116)
T ss_dssp             TTBCCEEEGGGTEEECCEESCCCCCCEEEEEEEECSSS
T ss_pred             ceEEEccccccchhhcceeccCCCCCEEEEEEeecCCC
Confidence            355444332  344699999999999999996554433

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=88.82  E-value=0.74  Score=22.90  Aligned_cols=33  Identities=15%  Similarity=0.240  Sum_probs=24.5

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+  .+.-.|.|.+++.+|++.|-|....
T Consensus        68 gRftiS~D~s~n~~~L~~~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          68 GRFTISRDDSKRRVYLQMNTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEB
T ss_pred             ecceeecccccceeccceeeccCCCceEEEeeEec
Confidence            36666543  2345699999999999999996543

>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.18  Score=24.23  Aligned_cols=57  Identities=5%  Similarity=-0.152  Sum_probs=36.6

Q ss_pred             CeEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEE
Q psy7044           1 MFDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAENASGKDEADVE   57 (68)
Q Consensus         1 ~~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~   57 (68)
                      .+-|.-++..++.+...........++++|.+.+...+-.+.+...+..-+.-..++
T Consensus        35 ~I~Wkl~~~~vP~~rq~~~~~~~~~SsVt~p~l~~~~a~LtC~v~~~g~~Qi~d~~E   91 (94)
T d2d9qb1          35 QILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVE   91 (94)
T ss_dssp             CCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEEEEEEE
T ss_pred             eEEEEECCEECCCcceeEEecCcEEEEEEecccccCcccEEEEEEeCCceEEEEeeE
Confidence            367999988876321111122233688999999999888888877665544433333

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=88.44  E-value=0.35  Score=24.21  Aligned_cols=34  Identities=15%  Similarity=0.163  Sum_probs=25.0

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEcC
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAENA   48 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n~   48 (68)
                      .|+.+..+.  +...|.+.+++.+|++.|-|.....
T Consensus        68 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHD  103 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             ecceeeeecccceeccceeeeccCcceEEEEEecCC
Confidence            466665433  3456999999999999999975443

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.44  E-value=0.6  Score=23.48  Aligned_cols=31  Identities=10%  Similarity=0.163  Sum_probs=23.6

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKA   45 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a   45 (68)
                      .|+.+..+.  +.-.|.+.+++.+|++.|-|..
T Consensus        66 gR~tiS~D~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          66 DRVTFTADTSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ccceEecccCceEEEEEEEccCCCCceEEEEEe
Confidence            466666543  3456999999999999999953

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=88.31  E-value=0.38  Score=23.94  Aligned_cols=32  Identities=6%  Similarity=0.122  Sum_probs=23.9

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|...
T Consensus        66 gR~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          66 DKARLTVDTSSSTAYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEecCccceEEecccccCCCcceEEEEeee
Confidence            466665432  34569999999999999999654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.11  E-value=0.38  Score=24.02  Aligned_cols=32  Identities=9%  Similarity=0.206  Sum_probs=24.4

Q ss_pred             CCEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNV--PYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+  .+.-.|.+.+++.+|++.|-|...
T Consensus        66 gRftiS~D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          66 GRATLTVDTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEecCcceEEeccccccCCCcceEEEEEEc
Confidence            56666543  345579999999999999999654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=88.00  E-value=0.45  Score=23.68  Aligned_cols=32  Identities=9%  Similarity=0.146  Sum_probs=24.4

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|.+.+++.+|++.|-|...
T Consensus        66 gR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          66 SRISITRDTSKNQFFLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEecccccceeeccccccccCCceEEEEeEe
Confidence            467666543  34569999999999999999543

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.024  Score=27.18  Aligned_cols=16  Identities=13%  Similarity=0.200  Sum_probs=11.9

Q ss_pred             CCEEEEEEEEcCCcce
Q psy7044          37 NSGVYRIKAENASGKD   52 (68)
Q Consensus        37 d~G~Y~c~a~n~~g~~   52 (68)
                      ..-.|+|.+..+....
T Consensus        76 ~g~~ftC~V~H~~~~~   91 (101)
T d1ow0a1          76 HGKTFTCTAAYPESKT   91 (101)
T ss_dssp             HTCEEEEEECCSSCSS
T ss_pred             CCCeEEEEEEeCCCCC
Confidence            3679999999776543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=87.19  E-value=0.37  Score=24.26  Aligned_cols=31  Identities=10%  Similarity=0.144  Sum_probs=23.1

Q ss_pred             CEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          16 NVEIVNV--PYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        16 ~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      |+.+..+  .+...|.|.+++.+|++.|-|...
T Consensus        67 R~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          67 RLSITRDTSKNQFFLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             TBCCEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeecccccceeecceeccccccceEEEeeee
Confidence            5544433  344679999999999999999643

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=86.06  E-value=0.83  Score=22.65  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=24.2

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEEc
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAEN   47 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~n   47 (68)
                      .|+.+..+.  +...|.|.+++.+|++.|-|...-
T Consensus        65 gR~tiSrD~s~nt~~L~i~~l~~eDtA~YyCAr~~   99 (118)
T d1lo4h1          65 GRFTISRDIVRNILTLQMSRLRSEDTAIYYCARGT   99 (118)
T ss_dssp             TTBEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEeccccceeeeeccccccCCcceEEEecccC
Confidence            356665432  345699999999999999996543

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=85.95  E-value=0.68  Score=23.16  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=23.8

Q ss_pred             CCEEEEEeC--CeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          15 GNVEIVNVP--YNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        15 ~~~~~~~~~--~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      .|+.+..+.  +...|.+.+++.+|++.|-|...
T Consensus        66 gR~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          66 GQVTMSADRSTNTAHLQWSSLKPSDTALYYCARL   99 (124)
T ss_dssp             TTCEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             eeEEEeecCCCcEEEEeeeccccccceEEEEeec
Confidence            466555443  34579999999999999999543

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.99  E-value=1.4  Score=21.23  Aligned_cols=43  Identities=12%  Similarity=0.016  Sum_probs=33.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      +-|..|++.++. +.++.-+ +..+++++.+++...+-.|.|.+.
T Consensus        42 I~Wkl~~~~~P~-~qy~~ln-~T~~Svtl~~l~~~~a~L~C~~l~   84 (100)
T d1i1ra1          42 IVWKTNHFTIPK-EQYTIIN-RTASSVTFTDIASLNIQLTCNILT   84 (100)
T ss_dssp             EEEEETTEECCG-GGCEEEE-TTEEEEEECSCCCSEEEEEEEEEE
T ss_pred             EEEEECCEECCc-hheEccC-CcEEEEEEccccCCcceeEEEEee
Confidence            679999999984 5565544 456679999999998888877653

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.20  E-value=0.64  Score=23.18  Aligned_cols=31  Identities=10%  Similarity=0.127  Sum_probs=22.7

Q ss_pred             CEEEEEe--CCeEEEEEcCCCCCCCEEEEEEEE
Q psy7044          16 NVEIVNV--PYNTKLSIVDILRKNSGVYRIKAE   46 (68)
Q Consensus        16 ~~~~~~~--~~~~~l~I~~~~~~d~G~Y~c~a~   46 (68)
                      |+.+..+  .+.-.|.+.+++.+|++.|-|...
T Consensus        69 R~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          69 RFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             TBCCEECTTTSEEEEEEESCCGGGCEECEEEEE
T ss_pred             eeEEccccccceeeceecccCCCcceEEEEecc
Confidence            4555433  234459999999999999999654

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=83.01  E-value=0.035  Score=27.07  Aligned_cols=25  Identities=8%  Similarity=0.041  Sum_probs=15.0

Q ss_pred             EEEEcCCCCCCCEEEEEEEEcCCcc
Q psy7044          27 KLSIVDILRKNSGVYRIKAENASGK   51 (68)
Q Consensus        27 ~l~I~~~~~~d~G~Y~c~a~n~~g~   51 (68)
                      .|.|...+-...-.|+|.+..+...
T Consensus        74 ~L~v~~~~W~~~~~ytC~V~H~~l~   98 (111)
T d1pfca_          74 RLKVDTDAWNNGESFTCSVMHEALP   98 (111)
T ss_dssp             EECCCSSCCHHHHCCEEEEEETTTT
T ss_pred             EEEECHHHhCCCCEEEEEEEeCCCC
Confidence            3444433322356699999987543

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=82.77  E-value=0.093  Score=23.66  Aligned_cols=34  Identities=12%  Similarity=0.240  Sum_probs=22.3

Q ss_pred             eEEEeCCEEeccCCCEEEEEeCCeEEEEEcCCCCCCCEEEEEE
Q psy7044           2 FDIFCPRSQVRSEGNVEIVNVPYNTKLSIVDILRKNSGVYRIK   44 (68)
Q Consensus         2 ~~W~k~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~c~   44 (68)
                      +.|++++..+....+         .+|-+=+.-.+-.|.|.|.
T Consensus        19 I~w~k~~~~~~~~~~---------ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2          19 ITLLQGTAGQEVSDN---------KTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             CEEEEECCCCBSSSS---------SBBCCBCSTTCCEEEEECC
T ss_pred             EEEccCccccccCCC---------cEEeCCCcccCCCcceECC
Confidence            689998654432211         1355666778889999993

>d1wgoa_ b.1.3.1 (A:) VPS10 domain-containing receptor SorCS2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PKD domain
family: PKD domain
domain: VPS10 domain-containing receptor SorCS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.19  E-value=0.71  Score=22.98  Aligned_cols=30  Identities=37%  Similarity=0.536  Sum_probs=22.3

Q ss_pred             CCCCEEEEEE--EEcCCcceeEEEEEEEEcCC
Q psy7044          35 RKNSGVYRIK--AENASGKDEADVEITVLILK   64 (68)
Q Consensus        35 ~~d~G~Y~c~--a~n~~g~~~~~~~l~V~~~p   64 (68)
                      -...|.|.+.  |.|..|.+.+...|.|..++
T Consensus        90 Y~~~G~Y~V~ltv~n~~gsdtat~~I~V~~P~  121 (123)
T d1wgoa_          90 YESPGIYRVSVRAENTAGHDEAVLFVQVSGPS  121 (123)
T ss_dssp             CSSCSCEEEEEEEECSSCEEEEEEEECBCCSS
T ss_pred             EEeCCeEEEEEEEEcCCCceEEEEEEEECCCC
Confidence            4578888776  66999988887777776654

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=1.6  Score=19.39  Aligned_cols=40  Identities=13%  Similarity=0.225  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCCCCEEEEEEEEcCCcceeEEEEEEEEcCC
Q psy7044          25 NTKLSIVDILRKNSGVYRIKAENASGKDEADVEITVLILK   64 (68)
Q Consensus        25 ~~~l~I~~~~~~d~G~Y~c~a~n~~g~~~~~~~l~V~~~p   64 (68)
                      ...+.|.+++....=.|++.|.|..|....+-.+.+.-.|
T Consensus        56 ~~~~~v~~L~p~t~Y~~rV~A~n~~G~s~~S~~~~~~T~p   95 (96)
T d1x5xa1          56 DLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP   95 (96)
T ss_dssp             CSEEEEESCCSSCEEEEEEEEECSSCEEEECCCEEEECCC
T ss_pred             CCEEEECCCCCCCEEEEEEEEEcCCcEeCCCCCEEEEeCc
Confidence            3467888998888888888999999965544444443333