Psyllid ID: psy7058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF
Secondary Structure (PSIPRED)
ccEEEEccccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccc
Coil and Loop (DISEMBL)
mgllattsadqtariwntEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWnietgevdkeysghqKAITSLAFCDF
Flexible Loop (DISEMBL)
mgllattsadqtariwntEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETgevdkeysghqKAITSLAFCDF
Low Complexity Region (SEG)
MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF
Disordered region (IsUnstruct)
***********TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF***
Disordered Region (DISOPRED)
MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF
Disordered Region (DISEMBL)
MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF
Disordered Region (DISPRO)
*GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q803V5	326	Target of rapamycin compl	yes	N/A	0.964	0.251	0.561	1e-22
Q5I0B4	326	Target of rapamycin compl	yes	N/A	0.964	0.251	0.561	3e-22
Q6PA72	326	Target of rapamycin compl	N/A	N/A	0.964	0.251	0.561	3e-22
Q9BVC4	326	Target of rapamycin compl	yes	N/A	0.964	0.251	0.539	3e-21
Q17QU5	326	Target of rapamycin compl	yes	N/A	0.964	0.251	0.539	3e-21
Q9DCJ1	326	Target of rapamycin compl	yes	N/A	0.964	0.251	0.539	4e-21
Q9Z2K5	326	Target of rapamycin compl	yes	N/A	0.964	0.251	0.539	4e-21
Q29HG9	315	Protein LST8 homolog OS=D	yes	N/A	0.952	0.257	0.634	2e-20
Q9W328	313	Protein LST8 homolog OS=D	yes	N/A	0.952	0.258	0.597	3e-19
Q54D08	304	Protein LST8 homolog OS=D	yes	N/A	0.964	0.269	0.518	6e-19

>sp|Q803V5|LST8_DANRE Target of rapamycin complex subunit lst8 OS=Danio rerio GN=mlst8 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 7/89 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
           LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD AF+ DS++++TASSD +
Sbjct: 234 LLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCAFSGDSQYIVTASSDNL 293

Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
           ARLW +ETGE+ +EYSGHQKA+  LAF D
Sbjct: 294 ARLWCVETGEIKREYSGHQKAVVCLAFND 322

Danio rerio (taxid: 7955)

>sp|Q5I0B4|LST8_XENTR Target of rapamycin complex subunit lst8 OS=Xenopus tropicalis GN=mlst8 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 7/89 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
           LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD AF+ DS++++TASSD +
Sbjct: 234 LLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCAFSGDSQYIVTASSDNL 293

Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
           ARLW +ETGE+ +EYSGHQKA+  LAF D
Sbjct: 294 ARLWCVETGEIKREYSGHQKAVVCLAFND 322

Xenopus tropicalis (taxid: 8364)

>sp|Q6PA72|LST8_XENLA Target of rapamycin complex subunit lst8 OS=Xenopus laevis GN=mlst8 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 66/89 (74%), Gaps = 7/89 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
           LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD AF+ DS++++TASSD +
Sbjct: 234 LLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCAFSGDSQYIVTASSDNL 293

Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
           ARLW +ETGE+ +EYSGHQKA+  LAF D
Sbjct: 294 ARLWCVETGEIKREYSGHQKAVVCLAFND 322

Xenopus laevis (taxid: 8355)

>sp|Q9BVC4|LST8_HUMAN Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8 PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 7/89 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
           LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct: 234 LLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
           ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct: 294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Homo sapiens (taxid: 9606)

>sp|Q17QU5|LST8_BOVIN Target of rapamycin complex subunit LST8 OS=Bos taurus GN=MLST8 PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 7/89 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
           LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct: 234 LLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
           ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct: 294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Bos taurus (taxid: 9913)

>sp|Q9DCJ1|LST8_MOUSE Target of rapamycin complex subunit LST8 OS=Mus musculus GN=Mlst8 PE=1 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 7/89 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
           LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct: 234 LLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
           ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct: 294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-422'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Mus musculus (taxid: 10090)

>sp|Q9Z2K5|LST8_RAT Target of rapamycin complex subunit LST8 OS=Rattus norvegicus GN=Mlst8 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 7/89 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
           LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct: 234 LLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
           ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct: 294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

Subunit of both mTORC1 and mTORC2, which regulates cell growth and survival in response to nutrient and hormonal signals. mTORC1 is activated in response to growth factors or amino acids. Growth factor-stimulated mTORC1 activation involves a AKT1-mediated phosphorylation of TSC1-TSC2, which leads to the activation of the RHEB GTPase that potently activates the protein kinase activity of mTORC1. Amino acid-signaling to mTORC1 requires its relocalization to the lysosomes mediated by the Ragulator complex and the Rag GTPases. Activated mTORC1 up-regulates protein synthesis by phosphorylating key regulators of mRNA translation and ribosome synthesis. mTORC1 phosphorylates EIF4EBP1 and releases it from inhibiting the elongation initiation factor 4E (eiF4E). mTORC1 phosphorylates and activates S6K1 at 'Thr-389', which then promotes protein synthesis by phosphorylating PDCD4 and targeting it for degradation. Within mTORC1, LST8 interacts directly with MTOR and enhances its kinase activity. In nutrient-poor conditions, stabilizes the MTOR-RPTOR interaction and favors RPTOR-mediated inhibition of MTOR activity. mTORC2 is also activated by growth factors, but seems to be nutrient-insensitive. mTORC2 seems to function upstream of Rho GTPases to regulate the actin cytoskeleton, probably by activating one or more Rho-type guanine nucleotide exchange factors. mTORC2 promotes the serum-induced formation of stress-fibers or F-actin. mTORC2 plays a critical role in AKT1 'Ser-473' phosphorylation, which may facilitate the phosphorylation of the activation loop of AKT1 on 'Thr-308' by PDK1 which is a prerequisite for full activation. mTORC2 regulates the phosphorylation of SGK1 at 'Ser-421'. mTORC2 also modulates the phosphorylation of PRKCA on 'Ser-657'.

Rattus norvegicus (taxid: 10116)

>sp|Q29HG9|LST8_DROPS Protein LST8 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15597 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 1/82 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTS D TA +W T DFS  REL   N  WVWDAAF+ DSK+L TASSDGVARLW +E
Sbjct: 227 LLLTTSGDGTACLWKTSDFSKWRELCIENY-WVWDAAFSADSKWLFTASSDGVARLWKLE 285

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           T    +EY+GH KAIT+L+F D
Sbjct: 286 TKTPTREYTGHTKAITALSFKD 307

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9W328|LST8_DROME Protein LST8 homolog OS=Drosophila melanogaster GN=CG3004 PE=2 SV=2

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 1/82 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTS D T  IW T+DFS  REL   N  WVWDAAF+ DSK+L TASSDG+ARLW ++
Sbjct: 228 LLLTTSGDGTVCIWKTDDFSKWRELCIENY-WVWDAAFSADSKWLFTASSDGIARLWKLQ 286

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           T    ++Y+GH KAIT+L+F D
Sbjct: 287 TKSSIRDYTGHTKAITALSFKD 308

Drosophila melanogaster (taxid: 7227)

>sp|Q54D08|LST8_DICDI Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LLAT SAD T +IWNT+ F++V+ L   +QRWVWD AF+ DS +L+T SSD ++RLW++ 
Sbjct: 221 LLATCSADHTVKIWNTKKFNVVQTL-NGHQRWVWDCAFSNDSAYLVTGSSDHLSRLWDLH 279

Query: 63  TGEVDKEYSGHQKAITSLAFCDF 85
            G+  K YSGH KA+ ++A  D 
Sbjct: 280 QGDAVKTYSGHIKAVNAVALNDL 302

Plays a role in regulation of adenylate cyclase and protein kinase B (PKB) activation during aggregation. Involved in both chemotaxis and signal relay.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
242006179	320	WD-repeat protein YNL006W, putative [Ped	0.964	0.256	0.682	3e-26
225712316	365	LTS8 homolog [Lepeophtheirus salmonis]	0.964	0.224	0.646	1e-25
270013561	309	hypothetical protein TcasGA2_TC012179 [T	0.952	0.262	0.679	2e-25
91089925	315	PREDICTED: similar to G protein beta sub	0.952	0.257	0.679	3e-25
244790043	311	MTOR associated protein, LST8 homolog [A	0.964	0.263	0.670	3e-25
380025568	320	PREDICTED: target of rapamycin complex s	0.964	0.256	0.670	5e-25
48120544	320	PREDICTED: target of rapamycin complex s	0.964	0.256	0.670	5e-25
383854265	320	PREDICTED: target of rapamycin complex s	0.964	0.256	0.670	6e-25
350411142	320	PREDICTED: target of rapamycin complex s	0.964	0.256	0.670	6e-25
340714552	320	PREDICTED: target of rapamycin complex s	0.964	0.256	0.670	7e-25

>gi|242006179|ref|XP_002423931.1| WD-repeat protein YNL006W, putative [Pediculus humanus corporis] gi|212507201|gb|EEB11193.1| WD-repeat protein YNL006W, putative [Pediculus humanus corporis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/82 (68%), Positives = 70/82 (85%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTSADQTAR+W T DFSL +EL    QRWVW AA ++DS+++LTASSDG+ARLWN+E
Sbjct: 235 LLVTTSADQTARVWKTADFSLYQELKLEGQRWVWKAALSVDSQYILTASSDGIARLWNVE 294

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           TG+V ++Y+GHQKAIT+LAF D
Sbjct: 295 TGKVKRDYNGHQKAITALAFRD 316

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225712316|gb|ACO12004.1| LTS8 homolog [Lepeophtheirus salmonis]

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/82 (64%), Positives = 70/82 (85%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           +LATTSADQT+++WNT+D+SL +EL   NQRWVWD AF+LDS++L TASSD +ARLW++E
Sbjct: 279 ILATTSADQTSKLWNTDDYSLKKELKVDNQRWVWDLAFSLDSQYLFTASSDNLARLWSLE 338

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
            G+V +EY+GHQ A+T LAF D
Sbjct: 339 KGKVVREYTGHQNALTCLAFRD 360

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013561|gb|EFA10009.1| hypothetical protein TcasGA2_TC012179 [Tribolium castaneum]

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/81 (67%), Positives = 68/81 (83%)

Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           L TTSADQTA+IWNT DFSL +EL   NQRWVWDAAF+ DS+++ TASSD  A++WNIE 
Sbjct: 226 LVTTSADQTAKIWNTSDFSLRQELKQENQRWVWDAAFSSDSQYVFTASSDYTAKIWNIEK 285

Query: 64  GEVDKEYSGHQKAITSLAFCD 84
           G ++KEY+GHQKA+T+LAF D
Sbjct: 286 GTMEKEYAGHQKAVTALAFRD 306

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089925|ref|XP_972979.1| PREDICTED: similar to G protein beta subunit-like [Tribolium castaneum]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/81 (67%), Positives = 68/81 (83%)

Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           L TTSADQTA+IWNT DFSL +EL   NQRWVWDAAF+ DS+++ TASSD  A++WNIE 
Sbjct: 232 LVTTSADQTAKIWNTSDFSLRQELKQENQRWVWDAAFSSDSQYVFTASSDYTAKIWNIEK 291

Query: 64  GEVDKEYSGHQKAITSLAFCD 84
           G ++KEY+GHQKA+T+LAF D
Sbjct: 292 GTMEKEYAGHQKAVTALAFRD 312

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|244790043|ref|NP_001156436.1| MTOR associated protein, LST8 homolog [Acyrthosiphon pisum] gi|239792846|dbj|BAH72716.1| ACYPI003573 [Acyrthosiphon pisum]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 67/82 (81%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTSADQ+A IW T DFSL +EL    QRWVWD AF+ DS+ LLTASSDG+ARLWNIE
Sbjct: 227 LLVTTSADQSALIWKTSDFSLKQELKDQRQRWVWDTAFSNDSEHLLTASSDGMARLWNIE 286

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           +  +++EY GHQK++T+LAFCD
Sbjct: 287 SDNIEREYEGHQKSLTALAFCD 308

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025568|ref|XP_003696542.1| PREDICTED: target of rapamycin complex subunit lst8-like [Apis florea]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 67/82 (81%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTSADQTAR+W T DFS V+ L    +RWVWDAAF+ DS+++ TASSDGVARLWN+ 
Sbjct: 233 LLVTTSADQTARVWKTTDFSEVQVLQHEAKRWVWDAAFSADSQYIFTASSDGVARLWNVS 292

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           TG V++EY GHQKA+T+LAF D
Sbjct: 293 TGAVEREYQGHQKAVTALAFRD 314

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48120544|ref|XP_393223.1| PREDICTED: target of rapamycin complex subunit lst8-like [Apis mellifera]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 67/82 (81%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTSADQTAR+W T DFS V+ L    +RWVWDAAF+ DS+++ TASSDGVARLWN+ 
Sbjct: 233 LLVTTSADQTARVWKTTDFSEVQVLQHEAKRWVWDAAFSADSQYIFTASSDGVARLWNVS 292

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           TG V++EY GHQKA+T+LAF D
Sbjct: 293 TGAVEREYQGHQKAVTALAFRD 314

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854265|ref|XP_003702642.1| PREDICTED: target of rapamycin complex subunit lst8-like [Megachile rotundata]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 67/82 (81%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTSADQTAR+W T DFS V+ L    +RWVWDAAF+ DS+++ TASSDGVARLWN+ 
Sbjct: 233 LLVTTSADQTARVWKTTDFSEVQVLQHEAKRWVWDAAFSADSQYIFTASSDGVARLWNVS 292

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           TG V++EY GHQKA+T+LAF D
Sbjct: 293 TGTVEREYQGHQKAVTALAFRD 314

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411142|ref|XP_003489252.1| PREDICTED: target of rapamycin complex subunit lst8-like [Bombus impatiens]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 67/82 (81%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTSADQTAR+W T DFS V+ L    +RWVWDAAF+ DS+++ TASSDGVARLWN+ 
Sbjct: 233 LLVTTSADQTARVWKTTDFSEVQVLQHEAKRWVWDAAFSADSQYIFTASSDGVARLWNVS 292

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           TG V++EY GHQKA+T+LAF D
Sbjct: 293 TGVVEREYQGHQKAVTALAFRD 314

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714552|ref|XP_003395791.1| PREDICTED: target of rapamycin complex subunit lst8-like [Bombus terrestris]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 67/82 (81%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LL TTSADQTAR+W T DFS V+ L    +RWVWDAAF+ DS+++ TASSDGVARLWN+ 
Sbjct: 233 LLVTTSADQTARVWKTTDFSEVQVLQHEAKRWVWDAAFSADSQYIFTASSDGVARLWNVS 292

Query: 63  TGEVDKEYSGHQKAITSLAFCD 84
           TG V++EY GHQKA+T+LAF D
Sbjct: 293 TGVVEREYQGHQKAVTALAFRD 314

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
UNIPROTKB|F1NAZ4	327	MLST8 "Uncharacterized protein	0.964	0.250	0.561	2.6e-22
UNIPROTKB|Q5I0B4	326	mlst8 "Target of rapamycin com	0.964	0.251	0.561	2.6e-22
UNIPROTKB|Q6PA72	326	mlst8 "Target of rapamycin com	0.964	0.251	0.561	2.6e-22
ZFIN|ZDB-GENE-030131-6176	326	mlst8 "MTOR associated protein	0.964	0.251	0.561	2.6e-22
UNIPROTKB|Q29HG9	315	GA15597 "Protein LST8 homolog"	0.952	0.257	0.634	7e-22
UNIPROTKB|Q17QU5	326	MLST8 "Target of rapamycin com	0.964	0.251	0.539	3e-21
UNIPROTKB|Q9BVC4	326	MLST8 "Target of rapamycin com	0.964	0.251	0.539	3e-21
UNIPROTKB|F1RFA8	330	MLST8 "Uncharacterized protein	0.964	0.248	0.539	3e-21
MGI|MGI:1929514	326	Mlst8 "MTOR associated protein	0.964	0.251	0.539	3e-21
RGD|69242	326	Mlst8 "MTOR associated protein	0.964	0.251	0.539	3e-21

UNIPROTKB|F1NAZ4 MLST8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/89 (56%), Positives = 66/89 (74%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD AF+ DS++++TASSD +
Sbjct:   235 LLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCAFSGDSQYIVTASSDNL 294

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EYSGHQKA+  LAF D
Sbjct:   295 ARLWCVETGEIKREYSGHQKAVVCLAFND 323

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

UNIPROTKB|Q5I0B4 mlst8 "Target of rapamycin complex subunit lst8" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/89 (56%), Positives = 66/89 (74%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD AF+ DS++++TASSD +
Sbjct:   234 LLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCAFSGDSQYIVTASSDNL 293

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EYSGHQKA+  LAF D
Sbjct:   294 ARLWCVETGEIKREYSGHQKAVVCLAFND 322

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|Q6PA72 mlst8 "Target of rapamycin complex subunit lst8" [Xenopus laevis (taxid:8355)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/89 (56%), Positives = 66/89 (74%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD AF+ DS++++TASSD +
Sbjct:   234 LLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCAFSGDSQYIVTASSDNL 293

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EYSGHQKA+  LAF D
Sbjct:   294 ARLWCVETGEIKREYSGHQKAVVCLAFND 322

GO:0005737 "cytoplasm" evidence=ISS

ZFIN|ZDB-GENE-030131-6176 mlst8 "MTOR associated protein, LST8 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/89 (56%), Positives = 66/89 (74%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G  ++ W+WD AF+ DS++++TASSD +
Sbjct:   234 LLATCSADQTCKIWRTSNFSLMTELSIKSNNPGETSRGWMWDCAFSGDSQYIVTASSDNL 293

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EYSGHQKA+  LAF D
Sbjct:   294 ARLWCVETGEIKREYSGHQKAVVCLAFND 322

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;ISS

UNIPROTKB|Q29HG9 GA15597 "Protein LST8 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 52/82 (63%), Positives = 60/82 (73%)

Query:     3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
             LL TTS D TA +W T DFS  REL   N  WVWDAAF+ DSK+L TASSDGVARLW +E
Sbjct:   227 LLLTTSGDGTACLWKTSDFSKWRELCIENY-WVWDAAFSADSKWLFTASSDGVARLWKLE 285

Query:    63 TGEVDKEYSGHQKAITSLAFCD 84
             T    +EY+GH KAIT+L+F D
Sbjct:   286 TKTPTREYTGHTKAITALSFKD 307

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q17QU5 MLST8 "Target of rapamycin complex subunit LST8" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct:   234 LLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct:   294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

GO:0005737 "cytoplasm" evidence=ISS

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|Q9BVC4 MLST8 "Target of rapamycin complex subunit LST8" [Homo sapiens (taxid:9606)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct:   234 LLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct:   294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0031295 "T cell costimulation" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0048015 "phosphatidylinositol-mediated signaling" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1RFA8 MLST8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct:   238 LLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNL 297

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct:   298 ARLWCVETGEIKREYGGHQKAVVCLAFND 326

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

MGI|MGI:1929514 Mlst8 "MTOR associated protein, LST8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct:   234 LLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct:   294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0030838 "positive regulation of actin filament polymerization" evidence=IMP

GO:0031931 "TORC1 complex" evidence=ISO

GO:0031932 "TORC2 complex" evidence=ISO

GO:0032008 "positive regulation of TOR signaling cascade" evidence=ISO

GO:0032314 "regulation of Rac GTPase activity" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IMP

RGD|69242 Mlst8 "MTOR associated protein, LST8 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/89 (53%), Positives = 65/89 (73%)

Query:     3 LLATTSADQTARIWNTEDFSLVREL-------GTANQRWVWDAAFTLDSKFLLTASSDGV 55
             LLAT SADQT +IW T +FSL+ EL       G +++ W+W  AF+ DS++++TASSD +
Sbjct:   234 LLATCSADQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNL 293

Query:    56 ARLWNIETGEVDKEYSGHQKAITSLAFCD 84
             ARLW +ETGE+ +EY GHQKA+  LAF D
Sbjct:   294 ARLWCVETGEIKREYGGHQKAVVCLAFND 322

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA;ISO

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IEA;ISO

GO:0032314 "regulation of Rac GTPase activity" evidence=IEA;ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISO

GO:0050731 "positive regulation of peptidyl-tyrosine phosphorylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54D08	LST8_DICDI	No assigned EC number	0.5180	0.9647	0.2697	yes	N/A
Q17QU5	LST8_BOVIN	No assigned EC number	0.5393	0.9647	0.2515	yes	N/A
Q5I0B4	LST8_XENTR	No assigned EC number	0.5617	0.9647	0.2515	yes	N/A
Q803V5	LST8_DANRE	No assigned EC number	0.5617	0.9647	0.2515	yes	N/A
Q9DCJ1	LST8_MOUSE	No assigned EC number	0.5393	0.9647	0.2515	yes	N/A
Q9W328	LST8_DROME	No assigned EC number	0.5975	0.9529	0.2587	yes	N/A
Q29HG9	LST8_DROPS	No assigned EC number	0.6341	0.9529	0.2571	yes	N/A
O74184	WAT1_SCHPO	No assigned EC number	0.5421	0.9647	0.2611	yes	N/A
Q9Z2K5	LST8_RAT	No assigned EC number	0.5393	0.9647	0.2515	yes	N/A
Q9BVC4	LST8_HUMAN	No assigned EC number	0.5393	0.9647	0.2515	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	85
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 1e-17
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 2   GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
            LLAT S D T ++W+ E   L+R L   +   V D A + D  +L + SSD   RLW++
Sbjct: 22  KLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80

Query: 62  ETGEVDKEYSGHQKAITSLAF 82
           ETGE  +  +GH   ++S+AF
Sbjct: 81  ETGECVRTLTGHTSYVSSVAF 101

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.8 bits (179), Expect = 4e-17
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           +L+++S D+T ++W+ E    +  L   +  WV   AF+ D  F+ ++S DG  +LW++ 
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 63  TGEVDKEYSGHQKAITSLAF 82
           TG+     +GH   + S+AF
Sbjct: 166 TGKCVATLTGHTGEVNSVAF 185

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.8 bits (174), Expect = 2e-16
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
            +A++S D T ++W+      V  L T +   V   AF+ D + LL++SSDG  +LW++ 
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Query: 63  TGEVDKEYSGHQKAITSLAFC 83
           TG+      GH+  + S+AF 
Sbjct: 208 TGKCLGTLRGHENGVNSVAFS 228

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.5 bits (168), Expect = 1e-15
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           L ++S+D T ++W+      +  L   ++  V   AF+ D   L + S DG  R+W++ T
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Query: 64  GEVDKEYSGHQKAITSLAF 82
           GE  +  SGH  ++TSLA+
Sbjct: 251 GECVQTLSGHTNSVTSLAW 269

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.0 bits (164), Expect = 5e-15
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
            LA+ S+D+T R+W+ E    VR L      +V   AF+ D + L ++S D   ++W++E
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 63  TGEVDKEYSGHQKAITSLAF 82
           TG+      GH   + S+AF
Sbjct: 124 TGKCLTTLRGHTDWVNSVAF 143

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 5e-11
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LLA+ S+D T R+W+    S +    + +   V   AF+ D K L + SSDG  RLW++E
Sbjct: 255 LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 63  TGEVDKEYS--GHQKAITSLAFCD 84
           TG++    +  GH+  ++SL+F  
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSP 338

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 5e-10
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
           V   AF+ D K L T S DG  ++W++ETGE+ +   GH   +  +A    
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD 62

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.9 bits (120), Expect = 4e-09
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNI 61
           LLA++S D T ++W+      +      +   V   AF+ D K L + SS DG  +LW++
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 62  ETGEVDKEYSGHQKAITSLAFC 83
            TG+     +GH   ++SLAF 
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFS 207

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.5 bits (119), Expect = 7e-09
 Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           L+A+ S+D T R+W+     L+R   + +   V  ++F+ D   L + SSDG  RLW++ 
Sbjct: 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-SSFSPDGSLLASGSSDGTIRLWDLR 271

Query: 63  TG-EVDKEYSGHQKAITSLAF 82
           +   + +  SGH  ++ S+AF
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAF 292

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.3 bits (113), Expect = 6e-08
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
           LLA+ S D T R+W+      V+ L + +   V   A++ D K L + S+DG  R+W+
Sbjct: 233 LLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 47.4 bits (111), Expect = 7e-08
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           L++  S D T R+W+      ++ L   +   V   +F+ D + + + S+DG  RLW++ 
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSPDGRVVSSGSTDGTVRLWDLS 400

Query: 63  TGEVDKEYSGHQKAITSLAF 82
           TG + +   GH   +TSL F
Sbjct: 401 TGSLLRNLDGHTSRVTSLDF 420

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.8 bits (99), Expect = 3e-06
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 3   LLATTSADQTARIWN-TEDFSLVRELGTANQRWVWDAAF-TLDSKFLLTASS--DGVARL 58
           LL + S+D T ++W+      L++ L   +   V   A  + D   +L ASS  DG  +L
Sbjct: 79  LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138

Query: 59  WNIET-GEVDKEYSGHQKAITSLAF 82
           W++ T G++ +   GH +++TSLAF
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAF 163

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.8 bits (99), Expect = 4e-06
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 2   GLLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLLTA-SSDGVARLW 59
            LLA+ S+D T R+W+ E   L+  L    ++  V   +F+ D   L++  S DG  RLW
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Query: 60  NIETGEVDKEYSGHQKAITSLAFCD 84
           ++ TG+  K   GH   + S++F  
Sbjct: 357 DLRTGKPLKTLEGH-SNVLSVSFSP 380

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF-LLTASSDGVARLWNI 61
           L + +S D T ++W+      +  L       V   AF+ D    + + SSDG  RLW++
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHT-DPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Query: 62  ETGEVDK-EYSGHQKAITSL 80
            TG++ +   SGH  ++ S 
Sbjct: 229 STGKLLRSTLSGHSDSVVSS 248

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           ++++ S D T R+W+    SL+R L       V    F+ D K L + SSD   RLW+++
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442

Query: 63  T 63
           T
Sbjct: 443 T 443

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 20 DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
             L++ L   +   V   AF+ D K+L + S DG  +LW+
Sbjct: 1  SGELLKTL-KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 29 TANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
            +   V   AF+ D   L + S DG  R+W+
Sbjct: 8  KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
KOG0263|consensus	707		99.87
KOG0271|consensus	480		99.87
KOG0272|consensus	459		99.84
KOG0295|consensus	406		99.83
KOG0272|consensus	459		99.83
KOG0302|consensus	440		99.83
KOG0279|consensus	315		99.83
KOG0266|consensus	456		99.82
KOG0286|consensus	343		99.8
KOG0284|consensus	464		99.79
KOG0271|consensus	480		99.79
KOG0264|consensus	422		99.78
KOG0266|consensus	456		99.77
PTZ00421	493	coronin; Provisional	99.77
KOG0284|consensus	464		99.77
KOG0316|consensus	307		99.76
KOG0263|consensus	707		99.76
KOG1273|consensus	405		99.75
KOG0279|consensus	315		99.74
KOG0277|consensus	311		99.73
PTZ00421	493	coronin; Provisional	99.73
KOG0286|consensus	343		99.73
KOG0273|consensus	524		99.72
KOG0283|consensus	712		99.71
KOG2394|consensus	636		99.71
KOG0285|consensus	460		99.71
KOG0315|consensus	311		99.7
KOG0281|consensus	499		99.7
KOG0285|consensus	460		99.7
KOG0273|consensus	524		99.7
KOG0319|consensus	775		99.69
KOG0319|consensus	775		99.69
KOG0645|consensus	312		99.69
KOG0275|consensus	508		99.69
PTZ00420	568	coronin; Provisional	99.68
KOG0291|consensus	893		99.68
KOG0315|consensus	311		99.68
KOG0295|consensus	406		99.67
KOG0294|consensus	362		99.67
KOG0275|consensus	508		99.66
KOG0308|consensus	735		99.66
KOG0276|consensus	794		99.66
KOG0282|consensus	503		99.66
KOG0282|consensus	503		99.65
KOG0291|consensus	893		99.65
KOG0318|consensus	603		99.65
KOG0269|consensus	839		99.65
KOG0276|consensus	794		99.65
PLN00181	793	protein SPA1-RELATED; Provisional	99.64
PTZ00420	568	coronin; Provisional	99.64
KOG0313|consensus	423		99.62
KOG0316|consensus	307		99.62
KOG0281|consensus	499		99.62
KOG0277|consensus	311		99.62
KOG1407|consensus	313		99.62
KOG0289|consensus	506		99.62
KOG0265|consensus	338		99.61
KOG0264|consensus	422		99.61
KOG0265|consensus	338		99.61
KOG0288|consensus	459		99.61
KOG0641|consensus	350		99.61
KOG0647|consensus	347		99.6
KOG0645|consensus	312		99.6
KOG0643|consensus	327		99.6
KOG0643|consensus	327		99.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.59
KOG1332|consensus	299		99.59
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.58
KOG0283|consensus	712		99.57
KOG0269|consensus	839		99.57
KOG0292|consensus	1202		99.57
KOG0296|consensus	399		99.56
KOG0293|consensus	519		99.56
KOG0289|consensus	506		99.55
PLN00181	793	protein SPA1-RELATED; Provisional	99.55
KOG0305|consensus	484		99.55
KOG0270|consensus	463		99.54
KOG0318|consensus	603		99.54
KOG0274|consensus	537		99.54
KOG1007|consensus	370		99.54
KOG0292|consensus	1202		99.53
KOG0274|consensus	537		99.53
KOG0639|consensus	705		99.53
KOG0310|consensus	487		99.53
KOG1539|consensus	910		99.51
KOG0267|consensus	825		99.51
KOG0296|consensus	399		99.51
KOG0278|consensus	334		99.51
KOG0303|consensus	472		99.51
KOG0306|consensus	888		99.5
KOG0293|consensus	519		99.49
KOG0278|consensus	334		99.49
KOG0310|consensus	487		99.49
KOG1034|consensus	385		99.49
KOG0294|consensus	362		99.49
KOG0267|consensus	825		99.48
KOG1446|consensus	311		99.48
KOG0644|consensus	1113		99.48
KOG0646|consensus	476		99.47
KOG0305|consensus	484		99.46
KOG0973|consensus	942		99.46
KOG0772|consensus	641		99.46
KOG0306|consensus	888		99.45
KOG1407|consensus	313		99.45
KOG0313|consensus	423		99.45
KOG2110|consensus	391		99.45
KOG0270|consensus	463		99.45
KOG0646|consensus	476		99.45
KOG1408|consensus	1080		99.44
KOG1034|consensus	385		99.44
KOG1445|consensus	1012		99.44
KOG0647|consensus	347		99.44
KOG0300|consensus	481		99.44
KOG0322|consensus	323		99.44
KOG0290|consensus	364		99.43
KOG0268|consensus	433		99.42
KOG0772|consensus	641		99.41
KOG0299|consensus	479		99.4
KOG0641|consensus	350		99.4
KOG1007|consensus	370		99.39
KOG4283|consensus	397		99.39
KOG0649|consensus	325		99.39
KOG0639|consensus	705		99.39
KOG0299|consensus	479		99.36
KOG0640|consensus	430		99.36
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.36
KOG0302|consensus	440		99.36
KOG0303|consensus	472		99.35
KOG2055|consensus	514		99.35
KOG2096|consensus	420		99.35
KOG4283|consensus	397		99.35
KOG2111|consensus	346		99.34
KOG2111|consensus	346		99.34
KOG1332|consensus	299		99.33
KOG1445|consensus	1012		99.33
KOG0308|consensus	735		99.33
KOG2445|consensus	361		99.32
KOG1408|consensus	1080		99.32
KOG1188|consensus	376		99.31
KOG0973|consensus	942		99.31
KOG1009|consensus	434		99.31
KOG4378|consensus	673		99.31
KOG0640|consensus	430		99.3
KOG0307|consensus	1049		99.3
KOG0771|consensus	398		99.29
KOG1538|consensus	1081		99.29
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.28
KOG0288|consensus	459		99.27
KOG0642|consensus	577		99.27
KOG1063|consensus	764		99.26
KOG1272|consensus	545		99.22
KOG0322|consensus	323		99.22
KOG1274|consensus	933		99.22
KOG1446|consensus	311		99.22
KOG1274|consensus	933		99.21
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.2
KOG4378|consensus	673		99.18
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.18
KOG1063|consensus	764		99.17
KOG1036|consensus	323		99.17
KOG0290|consensus	364		99.16
KOG1524|consensus	737		99.16
KOG0300|consensus	481		99.16
KOG1009|consensus	434		99.16
KOG0301|consensus	745		99.15
KOG1539|consensus	910		99.14
KOG2048|consensus	691		99.14
KOG2394|consensus	636		99.12
KOG2919|consensus	406		99.11
KOG1036|consensus	323		99.11
KOG0268|consensus	433		99.11
KOG2048|consensus	691		99.1
KOG0650|consensus	733		99.1
KOG2445|consensus	361		99.09
KOG1310|consensus	758		99.08
KOG4547|consensus	541		99.06
KOG2919|consensus	406		99.06
KOG0974|consensus	967		99.04
KOG0301|consensus	745		99.04
KOG0280|consensus	339		99.02
KOG4328|consensus	498		99.01
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.0
KOG1524|consensus	737		98.99
KOG4328|consensus	498		98.97
KOG0307|consensus	1049		98.95
KOG1188|consensus	376		98.95
KOG2110|consensus	391		98.95
KOG2106|consensus	626		98.94
COG2319	466	FOG: WD40 repeat [General function prediction only	98.94
KOG3881|consensus	412		98.94
KOG0321|consensus	720		98.93
KOG3881|consensus	412		98.91
KOG0649|consensus	325		98.91
KOG0650|consensus	733		98.9
KOG1273|consensus	405		98.89
KOG2106|consensus	626		98.89
KOG0321|consensus	720		98.87
KOG2139|consensus	445		98.86
KOG4227|consensus	609		98.85
KOG2055|consensus	514		98.82
KOG1963|consensus	792		98.79
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.77
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.77
KOG1272|consensus	545		98.77
COG2319	466	FOG: WD40 repeat [General function prediction only	98.76
KOG3914|consensus	390		98.73
KOG2096|consensus	420		98.73
KOG2321|consensus	703		98.72
KOG0771|consensus	398		98.72
KOG1523|consensus	361		98.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.7
KOG4714|consensus	319		98.68
KOG1310|consensus	758		98.68
KOG1523|consensus	361		98.63
KOG1517|consensus	1387		98.62
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.6
KOG1517|consensus	1387		98.6
KOG2695|consensus	425		98.59
KOG0974|consensus	967		98.59
PRK01742	429	tolB translocation protein TolB; Provisional	98.57
KOG4640|consensus	665		98.53
KOG4532|consensus	344		98.51
PRK01742	429	tolB translocation protein TolB; Provisional	98.5
KOG0644|consensus	1113		98.43
KOG4497|consensus	447		98.43
KOG1587|consensus	555		98.43
KOG0642|consensus	577		98.43
COG4946	668	Uncharacterized protein related to the periplasmic	98.42
KOG2139|consensus	445		98.35
KOG4227|consensus	609		98.35
KOG2066|consensus	846		98.35
KOG1538|consensus	1081		98.33
KOG1587|consensus	555		98.33
KOG1334|consensus	559		98.25
KOG2321|consensus	703		98.24
KOG1240|consensus	1431		98.24
KOG2695|consensus	425		98.24
KOG1645|consensus	463		98.23
PRK03629	429	tolB translocation protein TolB; Provisional	98.22
KOG4547|consensus	541		98.21
PRK02889	427	tolB translocation protein TolB; Provisional	98.21
KOG1064|consensus	2439		98.2
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	98.2
KOG0280|consensus	339		98.19
PRK05137	435	tolB translocation protein TolB; Provisional	98.16
KOG2079|consensus	1206		98.15
KOG4714|consensus	319		98.14
PRK04922	433	tolB translocation protein TolB; Provisional	98.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.1
PRK03629	429	tolB translocation protein TolB; Provisional	98.1
KOG1912|consensus	1062		98.08
KOG1240|consensus	1431		98.08
KOG3621|consensus	726		98.08
PRK05137	435	tolB translocation protein TolB; Provisional	98.07
PRK11028	330	6-phosphogluconolactonase; Provisional	98.06
KOG1275|consensus	1118		98.05
KOG1334|consensus	559		98.04
KOG2315|consensus	566		98.03
KOG2314|consensus	698		98.03
KOG1963|consensus	792		98.03
PRK02889	427	tolB translocation protein TolB; Provisional	97.99
KOG1064|consensus	2439		97.96
PRK04922	433	tolB translocation protein TolB; Provisional	97.94
PRK11028	330	6-phosphogluconolactonase; Provisional	97.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.9
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.9
PRK00178	430	tolB translocation protein TolB; Provisional	97.89
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.86
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.83
KOG3914|consensus	390		97.83
PRK01029	428	tolB translocation protein TolB; Provisional	97.82
KOG4497|consensus	447		97.8
COG4946	668	Uncharacterized protein related to the periplasmic	97.75
PRK04792	448	tolB translocation protein TolB; Provisional	97.74
KOG1912|consensus	1062		97.73
KOG2315|consensus	566		97.72
KOG4532|consensus	344		97.71
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.71
KOG1409|consensus	404		97.7
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.61
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.53
KOG4649|consensus	354		97.51
PRK01029	428	tolB translocation protein TolB; Provisional	97.51
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.5
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.49
KOG0309|consensus	1081		97.48
KOG2041|consensus	1189		97.47
PRK00178	430	tolB translocation protein TolB; Provisional	97.46
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.44
KOG2066|consensus	846		97.44
KOG3621|consensus	726		97.33
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	97.33
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.28
KOG2314|consensus	698		97.22
KOG4190|consensus	1034		97.2
KOG1275|consensus	1118		97.19
KOG4190|consensus	1034		97.13
KOG2395|consensus	644		97.1
PRK04792	448	tolB translocation protein TolB; Provisional	97.1
KOG3617|consensus	1416		97.09
KOG1645|consensus	463		96.98
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.96
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.9
KOG1354|consensus	433		96.85
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.78
KOG1409|consensus	404		96.68
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.68
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.66
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	96.5
KOG2444|consensus	238		96.49
KOG1832|consensus	1516		96.49
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.46
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.43
KOG2444|consensus	238		96.43
KOG1832|consensus	1516		96.42
KOG1354|consensus	433		96.37
COG5167	776	VID27 Protein involved in vacuole import and degra	96.27
KOG2041|consensus	1189		96.24
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.21
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.09
PRK04043	419	tolB translocation protein TolB; Provisional	95.99
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.97
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.96
KOG0882|consensus	558		95.91
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	95.83
KOG0309|consensus	1081		95.81
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.75
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.75
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	95.69
KOG4640|consensus	665		95.6
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	95.4
KOG4499|consensus	310		95.39
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.28
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.26
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	95.19
KOG1008|consensus	783		95.13
KOG0882|consensus	558		95.05
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.87
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.87
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.77
KOG1920|consensus	1265		94.72
PRK02888	635	nitrous-oxide reductase; Validated	94.72
KOG2079|consensus	1206		94.69
KOG3617|consensus	1416		94.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.53
KOG1008|consensus	783		94.49
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.36
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	94.35
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.05
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	93.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.76
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	93.63
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	93.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.58
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	93.5
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.1
KOG3630|consensus	1405		92.98
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	92.69
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.5
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	92.24
KOG2377|consensus	657		92.14
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.05
KOG4460|consensus	741		91.87
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	91.66
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.49
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.47
KOG2247|consensus	615		91.39
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.35
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	90.87
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.66
KOG4499|consensus	310		90.39
KOG4649|consensus	354		90.29
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	90.27
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	90.26
KOG2114|consensus	933		89.88
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	89.65
KOG1920|consensus	1265		89.64
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.85
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	88.55
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	88.49
KOG1916|consensus	1283		88.48
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	87.93
KOG2395|consensus	644		87.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	87.74
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.59
PRK04043	419	tolB translocation protein TolB; Provisional	86.85
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.46
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	84.66
PRK13616	591	lipoprotein LpqB; Provisional	84.23
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.93
PRK13616	591	lipoprotein LpqB; Provisional	83.52
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	82.77
COG3391	381	Uncharacterized conserved protein [Function unknow	82.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.56
KOG2114|consensus	933		81.21
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	80.73
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	80.58

>KOG0263|consensus

Probab=99.87  E-value=1.9e-21  Score=108.00  Aligned_cols=82  Identities=29%  Similarity=0.536  Sum_probs=78.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++++|+.|.++++||+.++..++.+.+ |..+|.+++++|+|.++++|+.|+.|.+||+..++.+..+.+|.+.|.++.
T Consensus       548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  548 NYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS  626 (707)
T ss_pred             cccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence            6799999999999999999999999987 999999999999999999999999999999999999999999999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+.
T Consensus       627 FS~  629 (707)
T KOG0263|consen  627 FSR  629 (707)
T ss_pred             Eec
Confidence            985

>KOG0271|consensus

Probab=99.87  E-value=1.5e-21  Score=102.55  Aligned_cols=84  Identities=32%  Similarity=0.514  Sum_probs=78.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc-ccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD-KEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~v~~   79 (85)
                      |..|++|+-|.++++||..+..+....++ |...+.+++|+|||+.+++|+.||.|++||.++++++ ..+.+|...|++
T Consensus       127 g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~  205 (480)
T KOG0271|consen  127 GSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA  205 (480)
T ss_pred             CceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence            46899999999999999999999999988 8899999999999999999999999999999998766 679999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|.|.
T Consensus       206 Lawep~  211 (480)
T KOG0271|consen  206 LAWEPL  211 (480)
T ss_pred             Eeeccc
Confidence            999873

>KOG0272|consensus

Probab=99.84  E-value=1.4e-20  Score=99.51  Aligned_cols=83  Identities=19%  Similarity=0.326  Sum_probs=79.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |.++++|+.|..-+|||++++..+.-+.+ |..+|..+.|+|+|-.+++|+.|++++|||++..+.+..+.+|...|..+
T Consensus       315 GSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V  393 (459)
T KOG0272|consen  315 GSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV  393 (459)
T ss_pred             CceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence            56789999999999999999999999988 99999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       394 k~~p  397 (459)
T KOG0272|consen  394 KYSP  397 (459)
T ss_pred             Eecc
Confidence            9987

>KOG0295|consensus

Probab=99.83  E-value=1.4e-19  Score=94.49  Aligned_cols=83  Identities=27%  Similarity=0.495  Sum_probs=78.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |+++.++++|++|++||+.++.++.++.+ |...|..++|+|.|++++++.+|+++++||++..++...+..|+.-++++
T Consensus       304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l  382 (406)
T KOG0295|consen  304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL  382 (406)
T ss_pred             ccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence            36889999999999999999999999998 88899999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|+.
T Consensus       383 Dfh~  386 (406)
T KOG0295|consen  383 DFHK  386 (406)
T ss_pred             ecCC
Confidence            8853

>KOG0272|consensus

Probab=99.83  E-value=5.4e-21  Score=101.00  Aligned_cols=84  Identities=31%  Similarity=0.420  Sum_probs=79.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|.+.++||+.++.......+ |...+.+++|.+||..+++|+.|..-++||+++++++..+.+|..+|.++
T Consensus       273 G~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V  351 (459)
T KOG0272|consen  273 GKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSV  351 (459)
T ss_pred             CceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeE
Confidence            68999999999999999999888777766 88899999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|+
T Consensus       352 ~fsPN  356 (459)
T KOG0272|consen  352 AFSPN  356 (459)
T ss_pred             eECCC
Confidence            99985

>KOG0302|consensus

Probab=99.83  E-value=1.1e-19  Score=95.26  Aligned_cols=83  Identities=20%  Similarity=0.345  Sum_probs=70.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCcee--eeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc---cccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSL--VRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG---EVDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~   76 (85)
                      +.+++|+.|+.|++||++.+..  ....+ .|+..|+-+.|+.+..++++|+.+|+++|||+++.   +++..|..|..+
T Consensus       271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p  349 (440)
T KOG0302|consen  271 GVFASCSCDGSIRIWDIRSGPKKAAVSTK-AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP  349 (440)
T ss_pred             ceEEeeecCceEEEEEecCCCccceeEee-ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence            4689999999999999998732  22223 48888999999998889999999999999999854   567789999999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |+++.|+|+
T Consensus       350 ItsieW~p~  358 (440)
T KOG0302|consen  350 ITSIEWHPH  358 (440)
T ss_pred             eeEEEeccc
Confidence            999999985

>KOG0279|consensus

Probab=99.83  E-value=1.4e-19  Score=91.87  Aligned_cols=82  Identities=21%  Similarity=0.373  Sum_probs=75.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..+++++.|+++++||+++.+....+.+ |...++.+.++|||..+++|+.|+.+.+||+++++.+..+. +...|++++
T Consensus       163 p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~  240 (315)
T KOG0279|consen  163 PIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC  240 (315)
T ss_pred             cEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE
Confidence            3588999999999999999888888777 88999999999999999999999999999999999988776 889999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       241 fspn  244 (315)
T KOG0279|consen  241 FSPN  244 (315)
T ss_pred             ecCC
Confidence            9984

>KOG0266|consensus

Probab=99.82  E-value=4.8e-19  Score=96.89  Aligned_cols=83  Identities=34%  Similarity=0.623  Sum_probs=76.2

Q ss_pred             CceeEEeeCCCcEEEeeCC-CceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+++++++.|.++++||+. .+..++.+.+ |...+++++|+|+++.+++|+.|++|++||++.+++...+.+|.+.|.+
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            4579999999999999994 4477777776 9999999999999999999999999999999999999999999999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++|++
T Consensus       294 ~~f~~  298 (456)
T KOG0266|consen  294 LAFSP  298 (456)
T ss_pred             EEECC
Confidence            99986

>KOG0286|consensus

Probab=99.80  E-value=1.6e-18  Score=88.63  Aligned_cols=83  Identities=22%  Similarity=0.418  Sum_probs=79.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.|++++-|.+..+||+++++....+.+ |...|.++.++| +++.+++|+-|+..++||++.+.+.++|.+|+..|+++
T Consensus       157 ~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  157 NHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV  235 (343)
T ss_pred             CceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceE
Confidence            4689999999999999999999999988 888999999999 99999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|.|.
T Consensus       236 ~ffP~  240 (343)
T KOG0286|consen  236 RFFPS  240 (343)
T ss_pred             EEccC
Confidence            99984

>KOG0284|consensus

Probab=99.79  E-value=2.9e-19  Score=94.45  Aligned_cols=82  Identities=29%  Similarity=0.479  Sum_probs=78.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++++++.|..+++||.+++.++.++.. |...|..+.|++++.+|++++.|..++++|++..+.++.+++|+..++++.
T Consensus       235 gLiasgskDnlVKlWDprSg~cl~tlh~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~  313 (464)
T KOG0284|consen  235 GLIASGSKDNLVKLWDPRSGSCLATLHG-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT  313 (464)
T ss_pred             ceeEEccCCceeEeecCCCcchhhhhhh-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec
Confidence            4689999999999999999999999887 888899999999999999999999999999999999999999999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+|
T Consensus       314 WhP  316 (464)
T KOG0284|consen  314 WHP  316 (464)
T ss_pred             ccc
Confidence            988

>KOG0271|consensus

Probab=99.79  E-value=1.5e-18  Score=91.46  Aligned_cols=84  Identities=18%  Similarity=0.456  Sum_probs=80.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.++++++-|..+++||.++++.+..+++ |...+..++|+-|.+++++++.|.++++|++++.+....+.+|.+.|+++
T Consensus       379 ~r~IASaSFDkSVkLW~g~tGk~lasfRG-Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~v  457 (480)
T KOG0271|consen  379 GRYIASASFDKSVKLWDGRTGKFLASFRG-HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAV  457 (480)
T ss_pred             ccEEEEeecccceeeeeCCCcchhhhhhh-ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEE
Confidence            46899999999999999999999999998 88899999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      .|+|.
T Consensus       458 DwspD  462 (480)
T KOG0271|consen  458 DWSPD  462 (480)
T ss_pred             EecCC
Confidence            99984

>KOG0264|consensus

Probab=99.78  E-value=4e-18  Score=90.52  Aligned_cols=83  Identities=19%  Similarity=0.336  Sum_probs=70.4

Q ss_pred             ceeEEeeCCCcEEEeeCCC--ceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCcc-ccccccccccce
Q psy7058           2 GLLATTSADQTARIWNTED--FSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAI   77 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v   77 (85)
                      +++++++.|+.+.+||+++  .++.....+ |...+++++|+| ++..+|+++.|++|.+||+++.+ ++-++.+|...|
T Consensus       241 ~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev  319 (422)
T KOG0264|consen  241 DLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV  319 (422)
T ss_pred             hhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence            4578999999999999995  333344444 889999999999 67788999999999999999864 567889999999


Q ss_pred             eEEEEeCC
Q psy7058          78 TSLAFCDF   85 (85)
Q Consensus        78 ~~~~~~~~   85 (85)
                      ..+.|+|+
T Consensus       320 ~~V~WSPh  327 (422)
T KOG0264|consen  320 FQVEWSPH  327 (422)
T ss_pred             EEEEeCCC
Confidence            99999996

>KOG0266|consensus

Probab=99.77  E-value=1.7e-17  Score=90.93  Aligned_cols=84  Identities=36%  Similarity=0.540  Sum_probs=74.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc--ccccccccccc--
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE--VDKEYSGHQKA--   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~--   76 (85)
                      |+++++|+.|++|++||++++++...+.. |...++.+++++++..+++++.|+.+++||+.++.  +...+..+..+  
T Consensus       258 g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  336 (456)
T KOG0266|consen  258 GNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAP  336 (456)
T ss_pred             CCEEEEecCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCc
Confidence            46899999999999999999999999988 88899999999999999999999999999999988  45666655544  


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      ++++.|+|.
T Consensus       337 ~~~~~fsp~  345 (456)
T KOG0266|consen  337 VTSVQFSPN  345 (456)
T ss_pred             eeEEEECCC
Confidence            899999874

>PTZ00421 coronin; Provisional

Probab=99.77  E-value=2.6e-17  Score=90.76  Aligned_cols=83  Identities=25%  Similarity=0.295  Sum_probs=71.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCce-------eeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFS-------LVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      ++|++++.|+.|++||+.+..       +...+.+ |...|.++.|+|++ ..+++++.|+.|++||+..++....+..|
T Consensus        89 ~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421         89 QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             CEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            579999999999999997642       3444554 77889999999975 68999999999999999999888888889


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      ...|.+++|+|.
T Consensus       168 ~~~V~sla~spd  179 (493)
T PTZ00421        168 SDQITSLEWNLD  179 (493)
T ss_pred             CCceEEEEEECC
Confidence            999999999874

>KOG0284|consensus

Probab=99.77  E-value=3.8e-18  Score=90.31  Aligned_cols=83  Identities=20%  Similarity=0.312  Sum_probs=77.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..+++++.|+.|++||....+....+.+ |...+.+++|+|....+++++.|..|++||.+++.++.++.+|+..|..++
T Consensus       193 skF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  193 SKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             ceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence            3579999999999999998888777776 888899999999999999999999999999999999999999999999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|+
T Consensus       272 f~~n  275 (464)
T KOG0284|consen  272 FNPN  275 (464)
T ss_pred             EcCC
Confidence            9884

>KOG0316|consensus

Probab=99.76  E-value=7.9e-18  Score=84.35  Aligned_cols=83  Identities=25%  Similarity=0.517  Sum_probs=79.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++.++++.|.++++|+...+..+.++.+ |...+..++.+.|...+++++.|+.+.+||+.+++..+.+.+|...|+.+
T Consensus        29 GnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV  107 (307)
T KOG0316|consen   29 GNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV  107 (307)
T ss_pred             CCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence            68999999999999999999999999988 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +||.
T Consensus       108 ~fNe  111 (307)
T KOG0316|consen  108 RFNE  111 (307)
T ss_pred             EecC
Confidence            9985

>KOG0263|consensus

Probab=99.76  E-value=3.4e-18  Score=95.43  Aligned_cols=84  Identities=35%  Similarity=0.524  Sum_probs=77.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |-++|+++.|++.++|......+.+.+.+ |...+.|+.|+|+..++++|+.|.++++||+.++..++.|.+|.++|.++
T Consensus       505 GyYFatas~D~tArLWs~d~~~PlRifag-hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al  583 (707)
T KOG0263|consen  505 GYYFATASHDQTARLWSTDHNKPLRIFAG-HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL  583 (707)
T ss_pred             ceEEEecCCCceeeeeecccCCchhhhcc-cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence            45789999999999999998788777776 87889999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       584 ~~Sp~  588 (707)
T KOG0263|consen  584 AFSPC  588 (707)
T ss_pred             EEcCC
Confidence            99984

>KOG1273|consensus

Probab=99.75  E-value=1.2e-17  Score=86.52  Aligned_cols=82  Identities=22%  Similarity=0.321  Sum_probs=73.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |.+||.|..+|.+.+||+.+....+.+.+ |..+|.+++|+++|+.+++++.|..+.+||+..+.++..+. ...+|..+
T Consensus        35 G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~  112 (405)
T KOG1273|consen   35 GDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGA  112 (405)
T ss_pred             cceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCcccee
Confidence            67899999999999999998886666665 88899999999999999999999999999999999888777 67888888


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|+|
T Consensus       113 q~hp  116 (405)
T KOG1273|consen  113 QWHP  116 (405)
T ss_pred             eecc
Confidence            8877

>KOG0279|consensus

Probab=99.74  E-value=9.6e-17  Score=81.76  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc-cccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v~~   79 (85)
                      |++.++++.|+.+++||+.++++..++.+ |...+.++++++|.+.+++|+.|++|.+|++........... +.+=|.+
T Consensus        75 g~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   75 GNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC  153 (315)
T ss_pred             CceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence            57889999999999999999999888888 888899999999999999999999999999975443322222 2678999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.|+|.
T Consensus       154 vrfsP~  159 (315)
T KOG0279|consen  154 VRFSPN  159 (315)
T ss_pred             EEEcCC
Confidence            999984

>KOG0277|consensus

Probab=99.73  E-value=8.9e-17  Score=81.23  Aligned_cols=84  Identities=21%  Similarity=0.347  Sum_probs=72.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCcc-cccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~   78 (85)
                      ++.+++++.|+.+++||++..-....+.. |...+.++.|+. +...+++++.|+.|+.||+++.+ ++..+.+|+-+|+
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVR  238 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVR  238 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeEEEe-ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEE
Confidence            36789999999999999987655555666 777899999998 77889999999999999999865 5678899999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      .++|||+
T Consensus       239 kvk~Sph  245 (311)
T KOG0277|consen  239 KVKFSPH  245 (311)
T ss_pred             EEecCcc
Confidence            9999995

>PTZ00421 coronin; Provisional

Probab=99.73  E-value=2.2e-16  Score=87.13  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=65.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   76 (85)
                      ++|++++.|+.|++||+.+++....+.. +...+.++.|+|++..+++++.|+.|++||+++++.+..+..|...
T Consensus       139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        139 NVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             CEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence            4789999999999999999888777766 7778999999999999999999999999999999887777777643

>KOG0286|consensus

Probab=99.73  E-value=7.5e-17  Score=82.69  Aligned_cols=83  Identities=20%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc--ccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG--HQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~v~   78 (85)
                      ++.+++|+.|...++||++.+..+..+.+ |...|+.++|.|+|.-+++|++|++.++||++..+.+..+..  ...+|+
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git  277 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT  277 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence            46789999999999999999999999988 888899999999999999999999999999999888777763  235788


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      +++||-
T Consensus       278 Sv~FS~  283 (343)
T KOG0286|consen  278 SVAFSK  283 (343)
T ss_pred             eEEEcc
Confidence            888874

>KOG0273|consensus

Probab=99.72  E-value=9.6e-17  Score=86.30  Aligned_cols=84  Identities=27%  Similarity=0.452  Sum_probs=75.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC---------EEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK---------FLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |.+|++++.|+++++|+.........+.. |...|..+.|+|++.         .+++++.|+++++||+..+.++.+|.
T Consensus       371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~  449 (524)
T KOG0273|consen  371 GSLLASCSDDGTLKIWSMGQSNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM  449 (524)
T ss_pred             CceEEEecCCCeeEeeecCCCcchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence            56899999999999999888888888887 888899999988643         68999999999999999999999999


Q ss_pred             ccccceeEEEEeCC
Q psy7058          72 GHQKAITSLAFCDF   85 (85)
Q Consensus        72 ~~~~~v~~~~~~~~   85 (85)
                      .|+.+|++++|+|.
T Consensus       450 kH~~pVysvafS~~  463 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPN  463 (524)
T ss_pred             cCCCceEEEEecCC
Confidence            99999999999984

>KOG0283|consensus

Probab=99.71  E-value=1.2e-16  Score=89.84  Aligned_cols=81  Identities=25%  Similarity=0.465  Sum_probs=70.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++|+++++|.++++|++...+++..+.  |...|+|++|+| |.++|++|+.|+.++||++...+...-.. -.+.|+++
T Consensus       381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAv  457 (712)
T KOG0283|consen  381 NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAV  457 (712)
T ss_pred             CeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeE
Confidence            689999999999999999888888876  889999999999 88999999999999999998776554333 34788888


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|.|.
T Consensus       458 cy~Pd  462 (712)
T KOG0283|consen  458 CYSPD  462 (712)
T ss_pred             EeccC
Confidence            88874

>KOG2394|consensus

Probab=99.71  E-value=5.7e-17  Score=88.46  Aligned_cols=84  Identities=23%  Similarity=0.358  Sum_probs=76.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++||+.++|+.++|||..+.+....++. +-+.+.|++|+|||+++++|++|-.|.+|.+...+.+..-++|+.=|..+
T Consensus       302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V  380 (636)
T KOG2394|consen  302 GKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV  380 (636)
T ss_pred             CceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence            67899999999999999998887776665 66679999999999999999999999999999999888888999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|.||
T Consensus       381 aFDpy  385 (636)
T KOG2394|consen  381 AFDPY  385 (636)
T ss_pred             eeccc
Confidence            99875

>KOG0285|consensus

Probab=99.71  E-value=2e-16  Score=83.18  Aligned_cols=82  Identities=27%  Similarity=0.419  Sum_probs=77.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +++++|+.|+++++||+.+++...++.+ |...+..+++++...++++++.|+.|+.||+...+.++.+-+|-..|++++
T Consensus       164 ~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~  242 (460)
T KOG0285|consen  164 EWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD  242 (460)
T ss_pred             eeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence            6799999999999999999999988887 888899999999999999999999999999999999999999999999998


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      .+|
T Consensus       243 lhP  245 (460)
T KOG0285|consen  243 LHP  245 (460)
T ss_pred             ccc
Confidence            876

>KOG0315|consensus

Probab=99.70  E-value=5.1e-16  Score=78.41  Aligned_cols=83  Identities=49%  Similarity=0.891  Sum_probs=73.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCc-eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +++|++++.|.++++|++.+. +....+.+ ++..++...|+-|+.++++++.|+.+++|++..++.+..+.+|..+..|
T Consensus       227 ~k~lat~ssdktv~iwn~~~~~kle~~l~g-h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc  305 (311)
T KOG0315|consen  227 VKYLATCSSDKTVKIWNTDDFFKLELVLTG-HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC  305 (311)
T ss_pred             CcEEEeecCCceEEEEecCCceeeEEEeec-CCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence            468999999999999999987 44444444 7789999999999999999999999999999999999999999998888


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++.+.
T Consensus       306 ~~ln~  310 (311)
T KOG0315|consen  306 VALND  310 (311)
T ss_pred             EEeeC
Confidence            87654

>KOG0281|consensus

Probab=99.70  E-value=3.3e-17  Score=86.01  Aligned_cols=80  Identities=26%  Similarity=0.562  Sum_probs=73.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +++++++.|.+|++|++.+++.++.+.+ |...|.|+.+  .++++++|++|.+|++||+..|.+++.+++|++-|+++.
T Consensus       331 kyIVsASgDRTikvW~~st~efvRtl~g-HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciR  407 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR  407 (499)
T ss_pred             ceEEEecCCceEEEEeccceeeehhhhc-ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhee
Confidence            5789999999999999999999999988 8777888766  799999999999999999999999999999999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+.
T Consensus       408 Fd~  410 (499)
T KOG0281|consen  408 FDN  410 (499)
T ss_pred             ecC
Confidence            864

>KOG0285|consensus

Probab=99.70  E-value=3e-16  Score=82.52  Aligned_cols=82  Identities=23%  Similarity=0.392  Sum_probs=76.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..|++|++|..+++||+++...+..+.+ |..++..+.+.|-...+++++.|++|++||++.++...++-.|...+++++
T Consensus       248 dvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~  326 (460)
T KOG0285|consen  248 DVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC  326 (460)
T ss_pred             eeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence            4689999999999999999999999888 889999999999888999999999999999999999988888999999998


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      .+|
T Consensus       327 lhP  329 (460)
T KOG0285|consen  327 LHP  329 (460)
T ss_pred             cCC
Confidence            876

>KOG0273|consensus

Probab=99.70  E-value=4.1e-16  Score=83.95  Aligned_cols=81  Identities=28%  Similarity=0.513  Sum_probs=73.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..+++++.|.++++||+..+.++..+.. |..+|.+++|+|+|+++++|+.|+.|.+|+++.++..+.+. ....|..++
T Consensus       423 ~~l~sas~dstV~lwdv~~gv~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-~~~~Ifel~  500 (524)
T KOG0273|consen  423 LMLASASFDSTVKLWDVESGVPIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-GTGGIFELC  500 (524)
T ss_pred             ceEEEeecCCeEEEEEccCCceeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-CCCeEEEEE
Confidence            4689999999999999999999999876 88999999999999999999999999999999999988887 456688888


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+-
T Consensus       501 Wn~  503 (524)
T KOG0273|consen  501 WNA  503 (524)
T ss_pred             EcC
Confidence            863

>KOG0319|consensus

Probab=99.69  E-value=3.3e-16  Score=87.72  Aligned_cols=82  Identities=33%  Similarity=0.579  Sum_probs=77.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.+++++.|.++++|.+.+..+..++.+ |...|..+.|-.++..+++++.||.+++|++++..++.++.+|++.|..++
T Consensus       518 q~laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  518 QLLATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS  596 (775)
T ss_pred             ceeEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence            4689999999999999999999999998 888999999999999999999999999999999999999999999999988


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      -+|
T Consensus       597 ~~~  599 (775)
T KOG0319|consen  597 VSP  599 (775)
T ss_pred             ecC
Confidence            765

>KOG0319|consensus

Probab=99.69  E-value=5.4e-16  Score=86.87  Aligned_cols=81  Identities=35%  Similarity=0.611  Sum_probs=75.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .+++||++|.+.++|+++.......+.+ |...++++.|++..+.+++++.|++|+||.+.+..+++++.+|...|.-++
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~  554 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS  554 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEeeC-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee
Confidence            4689999999999999998888888888 888899999999999999999999999999999999999999999998887


Q ss_pred             Ee
Q psy7058          82 FC   83 (85)
Q Consensus        82 ~~   83 (85)
                      |-
T Consensus       555 F~  556 (775)
T KOG0319|consen  555 FI  556 (775)
T ss_pred             ee
Confidence            73

>KOG0645|consensus

Probab=99.69  E-value=1.2e-15  Score=77.65  Aligned_cols=85  Identities=26%  Similarity=0.479  Sum_probs=72.7

Q ss_pred             CceeEEeeCCCcEEEeeCCC---ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc--ccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTED---FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG--EVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~   75 (85)
                      |..|++++.|..|++|+...   ..+...+...|...|.+++|+|.|+++++++.|.++.||.-..+  +++.++.+|+.
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn  106 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN  106 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence            44799999999999999884   44555555568889999999999999999999999999986644  57788999999


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .|.+++|++.
T Consensus       107 EVK~Vaws~s  116 (312)
T KOG0645|consen  107 EVKCVAWSAS  116 (312)
T ss_pred             ceeEEEEcCC
Confidence            9999999863

>KOG0275|consensus

Probab=99.69  E-value=4.8e-17  Score=84.96  Aligned_cols=84  Identities=30%  Similarity=0.485  Sum_probs=74.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc-------CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-c
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA-------NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-G   72 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~   72 (85)
                      |++|++|+.||.|.+|+..+++....++-.       +...+.|+.|+.|..++++|+.||.|++|.+.++.+++.|. .
T Consensus       225 gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrA  304 (508)
T KOG0275|consen  225 GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRA  304 (508)
T ss_pred             CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhh
Confidence            689999999999999999998876544321       34679999999999999999999999999999999999987 8


Q ss_pred             cccceeEEEEeC
Q psy7058          73 HQKAITSLAFCD   84 (85)
Q Consensus        73 ~~~~v~~~~~~~   84 (85)
                      |...|.+++|+.
T Consensus       305 HtkGvt~l~FSr  316 (508)
T KOG0275|consen  305 HTKGVTCLSFSR  316 (508)
T ss_pred             hccCeeEEEEcc
Confidence            999999999975

>PTZ00420 coronin; Provisional

Probab=99.68  E-value=2.7e-15  Score=83.88  Aligned_cols=82  Identities=18%  Similarity=0.267  Sum_probs=66.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCce--------eeeeeeccCCCcEEEEEecCCCCE-EEEEcCCCeEEEEEcCCccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFS--------LVRELGTANQRWVWDAAFTLDSKF-LLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      ++|++|+.|+.|++||+.++.        +...+.+ |...|.++.|+|++.. +++++.|+.|++||+++++....+. 
T Consensus        88 ~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-  165 (568)
T PTZ00420         88 EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-  165 (568)
T ss_pred             CEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-
Confidence            578999999999999997642        2223344 7788999999998875 5688999999999999888766665 


Q ss_pred             cccceeEEEEeCC
Q psy7058          73 HQKAITSLAFCDF   85 (85)
Q Consensus        73 ~~~~v~~~~~~~~   85 (85)
                      +...|.+++|+|.
T Consensus       166 ~~~~V~Slswspd  178 (568)
T PTZ00420        166 MPKKLSSLKWNIK  178 (568)
T ss_pred             cCCcEEEEEECCC
Confidence            5678999999873

>KOG0291|consensus

Probab=99.68  E-value=1.1e-15  Score=86.21  Aligned_cols=61  Identities=28%  Similarity=0.442  Sum_probs=50.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |+++++|+.|+.+++||..++-+..++.. |...++.+.|+.++..+++.+.||+|+.||++
T Consensus       362 gq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  362 GQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             CcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence            67899999999999999999888888876 77777777777777777777777777777764

>KOG0315|consensus

Probab=99.68  E-value=1.4e-15  Score=76.82  Aligned_cols=54  Identities=19%  Similarity=0.513  Sum_probs=47.0

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      +...+..+.|..+|++.++|++||+++|||++...+.+.++ +..+|+++..+|+
T Consensus        82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn  135 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN  135 (311)
T ss_pred             cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC
Confidence            44568889999999999999999999999999977777776 6799999988874

>KOG0295|consensus

Probab=99.67  E-value=1.5e-15  Score=79.78  Aligned_cols=83  Identities=19%  Similarity=0.396  Sum_probs=78.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |.+++++++|.+|++|+..++-++..+.+ +...+.-++.+.||.++++++.|.++++|-+.++.+...+..|+.+|-++
T Consensus       205 gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci  283 (406)
T KOG0295|consen  205 GDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECI  283 (406)
T ss_pred             CCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEE
Confidence            56899999999999999999999999998 88889999999999999999999999999999998889999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|.|
T Consensus       284 ~wap  287 (406)
T KOG0295|consen  284 AWAP  287 (406)
T ss_pred             Eecc
Confidence            9977

>KOG0294|consensus

Probab=99.67  E-value=9.2e-16  Score=79.40  Aligned_cols=84  Identities=21%  Similarity=0.263  Sum_probs=76.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC--EEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK--FLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |.++++|+.|.+|++||.++......+.. |.+.|+++.|.+...  +++++++||.|.+|+...-..+..+++|...|+
T Consensus        53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             ceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence            46899999999999999998877777766 788899999998765  899999999999999999999999999999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      .++.+|.
T Consensus       132 ~lsiHPS  138 (362)
T KOG0294|consen  132 DLSIHPS  138 (362)
T ss_pred             eeEecCC
Confidence            9999884

>KOG0275|consensus

Probab=99.66  E-value=4.1e-17  Score=85.20  Aligned_cols=83  Identities=28%  Similarity=0.462  Sum_probs=78.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.+++|+.||.|++|.+.++.+.+++..+|...+.++.|+.|+..+++++.|.++++..+++++++..+++|...|+...
T Consensus       276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence            35899999999999999999999999877888999999999999999999999999999999999999999999999888


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |++
T Consensus       356 ft~  358 (508)
T KOG0275|consen  356 FTD  358 (508)
T ss_pred             EcC
Confidence            875

>KOG0308|consensus

Probab=99.66  E-value=2e-15  Score=83.97  Aligned_cols=82  Identities=22%  Similarity=0.364  Sum_probs=76.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..+++|+..+.+++||-++.+.+..+++ |...|..+..++||..++++++|++|++||+...+++.++..|.+.|.++.
T Consensus       184 t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~  262 (735)
T KOG0308|consen  184 TIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ  262 (735)
T ss_pred             eEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence            4678999999999999999999999997 988999999999999999999999999999999999999999999999887


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      -+|
T Consensus       263 ~~~  265 (735)
T KOG0308|consen  263 SSP  265 (735)
T ss_pred             eCC
Confidence            665

>KOG0276|consensus

Probab=99.66  E-value=8.1e-16  Score=85.43  Aligned_cols=83  Identities=18%  Similarity=0.330  Sum_probs=76.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +.+++++.|+++++|.+....+..++.+ |...++++++-+  |..++++|++|.++++||.++..+++++.+|...|..
T Consensus       154 ntFaS~sLDrTVKVWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~  232 (794)
T KOG0276|consen  154 NTFASASLDRTVKVWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF  232 (794)
T ss_pred             cceeeeeccccEEEEEcCCCCCceeeec-cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence            4689999999999999999999999997 888899999977  4478999999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.|+|.
T Consensus       233 v~fhp~  238 (794)
T KOG0276|consen  233 VFFHPE  238 (794)
T ss_pred             EEecCC
Confidence            999873

>KOG0282|consensus

Probab=99.66  E-value=1.4e-15  Score=82.03  Aligned_cols=82  Identities=27%  Similarity=0.445  Sum_probs=74.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |..+++++-|+.+++||+.+|++..++..  ...+.++.++|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..
T Consensus       270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  270 GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD  347 (503)
T ss_pred             CCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence            46789999999999999999999999875  5568999999988 78899999999999999999999999999999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.|-+
T Consensus       348 i~F~~  352 (503)
T KOG0282|consen  348 ITFVD  352 (503)
T ss_pred             eEEcc
Confidence            98854

>KOG0282|consensus

Probab=99.65  E-value=1.9e-16  Score=85.22  Aligned_cols=83  Identities=29%  Similarity=0.397  Sum_probs=73.5

Q ss_pred             CceeEEeeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +.+|+++++|+.|++|++.. +.+++.+.+ |..+|..++|+.+|..+++++-|+.+++||+.+|++...+. ....+++
T Consensus       227 ~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~c  304 (503)
T KOG0282|consen  227 GHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTC  304 (503)
T ss_pred             eeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCcee
Confidence            35789999999999999987 677777777 99999999999999999999999999999999999998886 4567788


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       305 vkf~pd  310 (503)
T KOG0282|consen  305 VKFHPD  310 (503)
T ss_pred             eecCCC
Confidence            888773

>KOG0291|consensus

Probab=99.65  E-value=3.2e-15  Score=84.39  Aligned_cols=83  Identities=18%  Similarity=0.350  Sum_probs=75.0

Q ss_pred             CceeEEeeCC-CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSAD-QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |++++.++.. |.+.+|++.+..-+.+.++ |...+++++++|||+.+++|++|+.|++||...+-++.+|..|...|+.
T Consensus       319 GDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~  397 (893)
T KOG0291|consen  319 GDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTA  397 (893)
T ss_pred             CCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEE
Confidence            5778877654 7899999998888888777 8888999999999999999999999999999999999999999999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.|+.
T Consensus       398 v~f~~  402 (893)
T KOG0291|consen  398 VQFTA  402 (893)
T ss_pred             EEEEe
Confidence            99863

>KOG0318|consensus

Probab=99.65  E-value=4.1e-15  Score=81.15  Aligned_cols=82  Identities=24%  Similarity=0.334  Sum_probs=74.3

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc---ccccceeE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS---GHQKAITS   79 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~v~~   79 (85)
                      ++++++.|+.+-+|+-+..+-....+. |..-+++++++|||..+++.+.|+.+.+||-++++.+..+.   +|.+.|+.
T Consensus       162 Ri~T~sdDn~v~ffeGPPFKFk~s~r~-HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa  240 (603)
T KOG0318|consen  162 RIATGSDDNTVAFFEGPPFKFKSSFRE-HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA  240 (603)
T ss_pred             EEEeccCCCeEEEeeCCCeeeeecccc-cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence            579999999999999887776666666 77889999999999999999999999999999999888887   89999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       241 lsWsPD  246 (603)
T KOG0318|consen  241 LSWSPD  246 (603)
T ss_pred             EEECCC
Confidence            999984

>KOG0269|consensus

Probab=99.65  E-value=1.1e-15  Score=86.15  Aligned_cols=83  Identities=17%  Similarity=0.346  Sum_probs=73.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCc-cccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETG-EVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~~   79 (85)
                      +.|++|++|+.|++||++..+....+.. ....|.++.|+| .+..|+++.+.|.++.||++.. ++...+.+|.++|.+
T Consensus       147 ~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  147 NILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC  225 (839)
T ss_pred             cEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence            5689999999999999998877777766 556699999999 6788999999999999999876 567889999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.|+|.
T Consensus       226 ~nwhPn  231 (839)
T KOG0269|consen  226 LNWHPN  231 (839)
T ss_pred             EeecCC
Confidence            999984

>KOG0276|consensus

Probab=99.65  E-value=4.9e-15  Score=82.45  Aligned_cols=83  Identities=22%  Similarity=0.402  Sum_probs=77.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc-cccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG-EVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~~~   80 (85)
                      +++++|+.|..|++|+..+++.+..+.. |...|.++..+|.-.+++++++|.+|++|+.... .+.+++.+|..-|.++
T Consensus        68 nWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   68 NWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             ceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            5799999999999999999999999988 9999999999999999999999999999999765 6778999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       147 ~fnPk  151 (794)
T KOG0276|consen  147 AFNPK  151 (794)
T ss_pred             EecCC
Confidence            99984

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.64  E-value=1.5e-14  Score=83.73  Aligned_cols=81  Identities=22%  Similarity=0.501  Sum_probs=69.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++|++++.|+.|++||+.+++....+.. |...|.++.|+| ++..+++++.|+.|++||++++..+..+.. ...+.++
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v  623 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCV  623 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEE
Confidence            5789999999999999998888877766 888899999997 789999999999999999998887777764 3577788


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|++
T Consensus       624 ~~~~  627 (793)
T PLN00181        624 QFPS  627 (793)
T ss_pred             EEeC
Confidence            7753

>PTZ00420 coronin; Provisional

Probab=99.64  E-value=1.4e-14  Score=81.12  Aligned_cols=74  Identities=9%  Similarity=0.208  Sum_probs=63.7

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      .+++++.|+.|++||+++++....+.  +...+.++.|+++|..+++++.|+.|++||+++++.+..+.+|.+.+.
T Consensus       140 iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~  213 (568)
T PTZ00420        140 IMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN  213 (568)
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence            35789999999999999988776664  446799999999999999999999999999999988888888876543

>KOG0313|consensus

Probab=99.62  E-value=4.6e-15  Score=78.30  Aligned_cols=82  Identities=23%  Similarity=0.480  Sum_probs=69.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCce--ee-eeeeccCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCcc-ccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFS--LV-RELGTANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETGE-VDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~   76 (85)
                      .+|++|+.|..+++||.+++.  .+ .++.+ |...|..+.|+|. ..+|++++.|+++++||++..+ ++..+.+|.+.
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK  391 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK  391 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeec-chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence            578999999999999998753  33 33444 8889999999995 4568899999999999999988 88999999999


Q ss_pred             eeEEEEeC
Q psy7058          77 ITSLAFCD   84 (85)
Q Consensus        77 v~~~~~~~   84 (85)
                      |.++.|+.
T Consensus       392 vl~vdW~~  399 (423)
T KOG0313|consen  392 VLSVDWNE  399 (423)
T ss_pred             EEEEeccC
Confidence            99999974

>KOG0316|consensus

Probab=99.62  E-value=9.7e-15  Score=73.51  Aligned_cols=81  Identities=17%  Similarity=0.318  Sum_probs=69.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc--cccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG--EVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~v~~   79 (85)
                      ..+++|+-|..+.+||+.+++..+++.+ |...++.++|+.+...+++++-|..+++||.++.  ++++.+....+.|.+
T Consensus        72 skf~s~GgDk~v~vwDV~TGkv~Rr~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S  150 (307)
T KOG0316|consen   72 SKFASCGGDKAVQVWDVNTGKVDRRFRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS  150 (307)
T ss_pred             cccccCCCCceEEEEEcccCeeeeeccc-ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeE
Confidence            3578999999999999999999999998 8889999999999999999999999999998754  566666666666666


Q ss_pred             EEEe
Q psy7058          80 LAFC   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +..+
T Consensus       151 i~v~  154 (307)
T KOG0316|consen  151 IDVA  154 (307)
T ss_pred             EEec
Confidence            5544

>KOG0281|consensus

Probab=99.62  E-value=1.5e-15  Score=79.97  Aligned_cols=80  Identities=24%  Similarity=0.461  Sum_probs=72.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.+++|.+|++|++||..+-.+.+.+.+ |.+.+.|+.+  +.+.+++|++|.+|++||+++++++.++-.|.+.|..+.
T Consensus       208 ~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr  284 (499)
T KOG0281|consen  208 EKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR  284 (499)
T ss_pred             hhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence            3578999999999999999888888887 8888999887  677999999999999999999999999999999999998


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+.
T Consensus       285 f~n  287 (499)
T KOG0281|consen  285 FSN  287 (499)
T ss_pred             EeC
Confidence            874

>KOG0277|consensus

Probab=99.62  E-value=1.6e-14  Score=73.23  Aligned_cols=83  Identities=22%  Similarity=0.436  Sum_probs=72.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.+++++-|++|++|+..-++.+.++.+ +..-|....|+| .+..+++++.|+++++||++..-....+..|...|.++
T Consensus       118 ~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC  196 (311)
T ss_pred             eeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence            3467889999999999998888888887 888899999999 67889999999999999998766566688999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      .|+.+
T Consensus       197 dw~ky  201 (311)
T KOG0277|consen  197 DWSKY  201 (311)
T ss_pred             ccccc
Confidence            99864

>KOG1407|consensus

Probab=99.62  E-value=3.5e-15  Score=75.79  Aligned_cols=83  Identities=23%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |+++|+|+.|-.+.+||+...-+.+.+.. ...+|..+.|+.+|++++++++|..|-|=++++|..+..++ +..+.+.+
T Consensus       201 GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tV  278 (313)
T KOG1407|consen  201 GRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTV  278 (313)
T ss_pred             CceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeE
Confidence            68999999999999999998888888776 77889999999999999999999999999999999888887 78899999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       279 AWHPk  283 (313)
T KOG1407|consen  279 AWHPK  283 (313)
T ss_pred             EecCC
Confidence            99983

>KOG0289|consensus

Probab=99.62  E-value=2.8e-14  Score=76.60  Aligned_cols=85  Identities=20%  Similarity=0.307  Sum_probs=75.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |++++++++|+.....|.+++......... ..-.+.+..|+|||-.|.+|..|+.++|||+.+......|.+|..+|..
T Consensus       315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~  394 (506)
T KOG0289|consen  315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA  394 (506)
T ss_pred             CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence            679999999999999999999877666542 3345899999999999999999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+.+
T Consensus       395 i~FsEN  400 (506)
T KOG0289|consen  395 ISFSEN  400 (506)
T ss_pred             EEeccC
Confidence            999864

>KOG0265|consensus

Probab=99.61  E-value=6.8e-15  Score=75.79  Aligned_cols=82  Identities=18%  Similarity=0.390  Sum_probs=73.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++.+++.|+++++||+++......+..  .-++.++.|..++..+.+|+-|+.|++||++....+..+.+|.++|+.+.
T Consensus       146 ~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~ls  223 (338)
T KOG0265|consen  146 QLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLS  223 (338)
T ss_pred             eEEEecCCCceEEEEeecccchhhcccc--ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEE
Confidence            4578999999999999998888877764  33589999999999999999999999999999999999999999999998


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      .+|+
T Consensus       224 ls~~  227 (338)
T KOG0265|consen  224 LSRY  227 (338)
T ss_pred             eccC
Confidence            8774

>KOG0264|consensus

Probab=99.61  E-value=7.3e-15  Score=78.45  Aligned_cols=83  Identities=18%  Similarity=0.355  Sum_probs=67.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCcee-eeeeeccCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCc--------------c
Q psy7058           2 GLLATTSADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETG--------------E   65 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~--------------~   65 (85)
                      ..||+|+.|+++.+||+++.+. +..+.. |...|..+.|+|. ...+++.+.|+.+.+||+..-              +
T Consensus       286 ~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE  364 (422)
T KOG0264|consen  286 FILATGSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE  364 (422)
T ss_pred             ceEEeccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence            4689999999999999998754 445555 8889999999995 577889999999999998532              1


Q ss_pred             ccccccccccceeEEEEeCC
Q psy7058          66 VDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        66 ~~~~~~~~~~~v~~~~~~~~   85 (85)
                      .+....+|...|..++|+|+
T Consensus       365 llF~HgGH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  365 LLFIHGGHTAKVSDFSWNPN  384 (422)
T ss_pred             eeEEecCcccccccccCCCC
Confidence            23556689999999999985

>KOG0265|consensus

Probab=99.61  E-value=1.6e-14  Score=74.45  Aligned_cols=80  Identities=23%  Similarity=0.293  Sum_probs=69.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceee-eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLV-RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |..+++++.|..|.+|++...... ..+.+ |.+.|..+.|.++++.+++++.|++++.||+++++..+.+++|..-++.
T Consensus        59 gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs  137 (338)
T KOG0265|consen   59 GSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNS  137 (338)
T ss_pred             CCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeee
Confidence            567999999999999997654443 34444 8899999999999999999999999999999999999999999988887


Q ss_pred             EE
Q psy7058          80 LA   81 (85)
Q Consensus        80 ~~   81 (85)
                      +.
T Consensus       138 ~~  139 (338)
T KOG0265|consen  138 LD  139 (338)
T ss_pred             cC
Confidence            65

>KOG0288|consensus

Probab=99.61  E-value=1.7e-14  Score=76.90  Aligned_cols=84  Identities=23%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc---CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccc--
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA---NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQK--   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--   75 (85)
                      |..|++++.|..+.+.|+++.+....+...   .....+.+.|+|++.++++|+.||.|+||++.++++...+.....  
T Consensus       353 g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~  432 (459)
T KOG0288|consen  353 GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA  432 (459)
T ss_pred             CeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc
Confidence            356788899999999999998887776652   234588999999999999999999999999999998887775544  


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      .|++++|+|
T Consensus       433 aI~s~~W~~  441 (459)
T KOG0288|consen  433 AITSLSWNP  441 (459)
T ss_pred             ceEEEEEcC
Confidence            599999987

>KOG0641|consensus

Probab=99.61  E-value=2e-14  Score=72.27  Aligned_cols=84  Identities=23%  Similarity=0.353  Sum_probs=73.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc------CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA------NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQK   75 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   75 (85)
                      -.+++|++|.+|+.||++-...+..+...      ....+..+++.|.|+++++|..|....+||++.++.++.+-.|..
T Consensus       195 ~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa  274 (350)
T KOG0641|consen  195 AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA  274 (350)
T ss_pred             cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc
Confidence            35789999999999999977777766531      235688999999999999999999999999999999999999999


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .|+++.|+|.
T Consensus       275 dir~vrfsp~  284 (350)
T KOG0641|consen  275 DIRCVRFSPG  284 (350)
T ss_pred             ceeEEEeCCC
Confidence            9999999983

>KOG0647|consensus

Probab=99.60  E-value=1.5e-14  Score=74.67  Aligned_cols=82  Identities=24%  Similarity=0.447  Sum_probs=68.6

Q ss_pred             ceeEEeeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      .++++++-|+++++|++.. +....+....+.+++.+++|+.+|..+++++.|+.+++||+.+++ ..++..|..+|.++
T Consensus        41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~  119 (347)
T KOG0647|consen   41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTC  119 (347)
T ss_pred             ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEE
Confidence            4577999999999999986 344444444488899999999999999999999999999999884 55666799999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|-+
T Consensus       120 ~wv~  123 (347)
T KOG0647|consen  120 HWVP  123 (347)
T ss_pred             EEec
Confidence            8854

>KOG0645|consensus

Probab=99.60  E-value=5.8e-14  Score=71.69  Aligned_cols=83  Identities=27%  Similarity=0.398  Sum_probs=72.9

Q ss_pred             CceeEEeeCCCcEEEeeCCC--ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc---ccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTED--FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG---EVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~   75 (85)
                      |++|++++-|.++.+|.-..  .+++..+.+ |...+.+++|+.+|.+|++++.|+.+-||.+...   .+...++.|.+
T Consensus        73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq  151 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ  151 (312)
T ss_pred             CcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence            67899999999999998653  366777777 8888999999999999999999999999999754   46678889999


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      .|..+.|+|
T Consensus       152 DVK~V~WHP  160 (312)
T KOG0645|consen  152 DVKHVIWHP  160 (312)
T ss_pred             cccEEEEcC
Confidence            999999998

>KOG0643|consensus

Probab=99.60  E-value=6.5e-15  Score=75.09  Aligned_cols=83  Identities=19%  Similarity=0.286  Sum_probs=73.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++.+++|..++.|..||+++++....-...|...|+.++++++..++++++.|.+-++||+.+.+.++++. ...+|++.
T Consensus       159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a  237 (327)
T KOG0643|consen  159 GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA  237 (327)
T ss_pred             CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence            46799999999999999999866655544478889999999999999999999999999999999998887 57789888


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +++|
T Consensus       238 aisP  241 (327)
T KOG0643|consen  238 AISP  241 (327)
T ss_pred             eccc
Confidence            8887

>KOG0643|consensus

Probab=99.60  E-value=4.3e-14  Score=72.18  Aligned_cols=82  Identities=26%  Similarity=0.439  Sum_probs=75.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |.+|.+++.|....+|-..+++.+..+.+ |.+.|+++..+.+.+.+++|+.|.++++||+++++++..++ ...+|..+
T Consensus        22 GDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~   99 (327)
T KOG0643|consen   22 GDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV   99 (327)
T ss_pred             CcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE
Confidence            67899999999999999999999999998 99999999999999999999999999999999999988887 56788888


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|++
T Consensus       100 ~F~~  103 (327)
T KOG0643|consen  100 DFSF  103 (327)
T ss_pred             eecc
Confidence            7764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.59  E-value=1.1e-13  Score=70.61  Aligned_cols=83  Identities=39%  Similarity=0.582  Sum_probs=72.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.++.+++|+..+++....... +...+..+.|.+++..+++++.++.+++|++..++....+..|...+.++
T Consensus        21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~   99 (289)
T cd00200          21 GKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV   99 (289)
T ss_pred             CCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE
Confidence            46789999999999999998776666655 66778899999999999999999999999999888888888888899999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|+|
T Consensus       100 ~~~~  103 (289)
T cd00200         100 AFSP  103 (289)
T ss_pred             EEcC
Confidence            9986

>KOG1332|consensus

Probab=99.59  E-value=4.4e-14  Score=71.37  Aligned_cols=84  Identities=29%  Similarity=0.418  Sum_probs=71.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCc---eeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCcccc--cccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGEVD--KEYSGH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~   73 (85)
                      |.+|++++.|++|+++.+++.   +.+..+.+ |.++++.+.|..  -|.++++++-|+.+.||.-.+++-.  ..+..|
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h  101 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH  101 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence            578999999999999999764   34556666 999999999976  7999999999999999999888533  345678


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      ...|++++|.|+
T Consensus       102 ~~SVNsV~waph  113 (299)
T KOG1332|consen  102 SASVNSVAWAPH  113 (299)
T ss_pred             cccceeeccccc
Confidence            999999999885

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.58  E-value=1.7e-13  Score=69.96  Aligned_cols=82  Identities=33%  Similarity=0.564  Sum_probs=71.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +++++++.++.+++||..+++....+.. +...+.++.|++++.++++++.++.+.+|++.+.+....+..|...+.+++
T Consensus        64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          64 TYLASGSSDKTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             CEEEEEcCCCeEEEEEcCcccceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence            4789999999999999998777777665 666799999999988888888899999999998888888888888999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+|
T Consensus       143 ~~~  145 (289)
T cd00200         143 FSP  145 (289)
T ss_pred             EcC
Confidence            987

>KOG0283|consensus

Probab=99.57  E-value=7e-15  Score=82.92  Aligned_cols=52  Identities=31%  Similarity=0.498  Sum_probs=45.9

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      |...|.++.|+.++ +|++.+.|+++++|++....++..|. |.+-|+|++|+|
T Consensus       368 Ht~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  368 HTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             cchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence            55568889998554 78888999999999999999999998 999999999998

>KOG0269|consensus

Probab=99.57  E-value=1.8e-14  Score=81.42  Aligned_cols=84  Identities=11%  Similarity=0.188  Sum_probs=67.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc-cccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v~~   79 (85)
                      +..++++...|.+.+||++..........+|.+++.++.|+|++.++|+|+.|+.|+||++...+.-..... ...++..
T Consensus       189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~r  268 (839)
T KOG0269|consen  189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGR  268 (839)
T ss_pred             CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeee
Confidence            356889999999999999977655544455999999999999999999999999999999986543322221 3568888


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++|-|
T Consensus       269 VkWRP  273 (839)
T KOG0269|consen  269 VKWRP  273 (839)
T ss_pred             eeecc
Confidence            88876

>KOG0292|consensus

Probab=99.57  E-value=2.6e-14  Score=82.25  Aligned_cols=82  Identities=21%  Similarity=0.370  Sum_probs=78.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++++|+.|-.|++|+..+..+..++.+ |-..|..+.|++.-.+++++++|-+|+||+..+.+++..+.+|...|.|.+
T Consensus        64 plFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   64 PLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             CeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            5689999999999999999999999988 889999999999999999999999999999999999999999999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+|
T Consensus       143 Fhp  145 (1202)
T KOG0292|consen  143 FHP  145 (1202)
T ss_pred             cCC
Confidence            988

>KOG0296|consensus

Probab=99.56  E-value=2.3e-14  Score=75.39  Aligned_cols=80  Identities=29%  Similarity=0.417  Sum_probs=71.4

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      +.|.|+.||+|.+||....+......  |...|..+.|-+ ..++++++.+|.|+.||.++++....+.+|...|.++++
T Consensus       300 L~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l  376 (399)
T KOG0296|consen  300 LAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL  376 (399)
T ss_pred             hhhcccccceEEEEecccchhheecc--CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEE
Confidence            45789999999999998877766655  667799999987 788999999999999999999999999999999999999


Q ss_pred             eCC
Q psy7058          83 CDF   85 (85)
Q Consensus        83 ~~~   85 (85)
                      +|+
T Consensus       377 s~~  379 (399)
T KOG0296|consen  377 SPQ  379 (399)
T ss_pred             cCC
Confidence            874

>KOG0293|consensus

Probab=99.56  E-value=9.3e-15  Score=78.16  Aligned_cols=61  Identities=25%  Similarity=0.418  Sum_probs=56.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      .++++|++|+.|++|+..+++++..+.+ |...+++++|+| +..++|++++||+|+||....
T Consensus       453 ~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  453 KFIASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ceEEecCCCceEEEEEccCCceeEeecC-CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            5789999999999999999999999998 888999999999 567899999999999998754

>KOG0289|consensus

Probab=99.55  E-value=8.3e-14  Score=74.84  Aligned_cols=83  Identities=23%  Similarity=0.351  Sum_probs=71.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc-ccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH-QKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~v~~   79 (85)
                      |-.+.+|..|+.+++||+.++.....+.+ |.++|..+.|+-+|-++++++.|+.|++||++..+...++... ..++.+
T Consensus       359 gLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s  437 (506)
T KOG0289|consen  359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS  437 (506)
T ss_pred             ceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence            34678999999999999999998888888 9999999999999999999999999999999998887777632 235777


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.|.+
T Consensus       438 ~~fD~  442 (506)
T KOG0289|consen  438 LSFDQ  442 (506)
T ss_pred             EEEcC
Confidence            77643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.55  E-value=3.6e-13  Score=78.15  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=68.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEec-CCCCEEEEEcCCCeEEEEEcCCcc-cccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-LDSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~   78 (85)
                      +.+|++++.|+.+++||++++.....+..  ...+.++.|+ +++..+++++.|+.|++||++..+ ....+.+|...|.
T Consensus       588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~  665 (793)
T PLN00181        588 PTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS  665 (793)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence            35789999999999999998888777764  3468899995 479999999999999999998765 4567778999999


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      +++|.+
T Consensus       666 ~v~f~~  671 (793)
T PLN00181        666 YVRFVD  671 (793)
T ss_pred             EEEEeC
Confidence            999864

>KOG0305|consensus

Probab=99.55  E-value=2.1e-14  Score=78.63  Aligned_cols=84  Identities=19%  Similarity=0.275  Sum_probs=75.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..+.+|+.++.|..+|++..+........|...+..+.|++|+.++++|+.|+.+.|||.....+...+..|..+|..++
T Consensus       271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a  350 (484)
T KOG0305|consen  271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA  350 (484)
T ss_pred             ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence            45789999999999999988776663334888899999999999999999999999999988888899999999999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+||
T Consensus       351 wcP~  354 (484)
T KOG0305|consen  351 WCPW  354 (484)
T ss_pred             eCCC
Confidence            9996

>KOG0270|consensus

Probab=99.54  E-value=1.4e-13  Score=73.94  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=65.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.|++|+.|.++++||+.++++...+.. +...|+++.|+| ....+++|+.|+++.+.|.+........-...+.|-.+
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            4689999999999999999999988876 788899999999 56789999999999999999533222222244566666


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       336 ~w~~  339 (463)
T KOG0270|consen  336 AWDP  339 (463)
T ss_pred             EecC
Confidence            6665

>KOG0318|consensus

Probab=99.54  E-value=1.4e-13  Score=75.36  Aligned_cols=71  Identities=23%  Similarity=0.368  Sum_probs=64.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec--cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |+++++.+.|+++.+||-.+++.+..+..  +|.+.|..+.|+||++.+++++.|.+++|||+.+.+..+++.
T Consensus       202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~  274 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP  274 (603)
T ss_pred             CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence            67899999999999999999999988873  488899999999999999999999999999998887766654

>KOG0274|consensus

Probab=99.54  E-value=2.2e-13  Score=76.11  Aligned_cols=79  Identities=27%  Similarity=0.416  Sum_probs=66.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      .+++|+.|.++++|++.++..+..+.+ |..+|.++..+  +..+++|+.|+.|.+|++..++++..+.+|...|.++.+
T Consensus       303 ~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~  379 (537)
T KOG0274|consen  303 LLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV  379 (537)
T ss_pred             eEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence            345667888888888888877777777 88889999885  889999999999999999999999999999999999877


Q ss_pred             eC
Q psy7058          83 CD   84 (85)
Q Consensus        83 ~~   84 (85)
                      .+
T Consensus       380 ~~  381 (537)
T KOG0274|consen  380 DS  381 (537)
T ss_pred             cC
Confidence            54

>KOG1007|consensus

Probab=99.54  E-value=6.5e-14  Score=72.27  Aligned_cols=83  Identities=24%  Similarity=0.434  Sum_probs=70.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCCcc-ccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIETGE-VDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~   79 (85)
                      +.+++. .|+++..||+++.+....+..+|...+..+.++|+.. +++++++|+.|+|||.+..+ ++..+.+|..=|.+
T Consensus       185 nqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  185 NQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA  263 (370)
T ss_pred             ceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence            344444 5789999999999999999888988999999999764 57899999999999998764 66789999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.|+|.
T Consensus       264 VRfn~~  269 (370)
T KOG1007|consen  264 VRFNPE  269 (370)
T ss_pred             EEecCc
Confidence            999873

>KOG0292|consensus

Probab=99.53  E-value=3e-14  Score=82.03  Aligned_cols=82  Identities=15%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .+++++-.+|.|.+||-+.+..+.++.. |.+++..++|+|++.++++|++|..|++|+.++.+++.++.+|-+.|+.+.
T Consensus        22 PwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~  100 (1202)
T KOG0292|consen   22 PWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVF  100 (1202)
T ss_pred             CEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEee
Confidence            4688999999999999999999999887 999999999999999999999999999999999999999999999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |++
T Consensus       101 FHh  103 (1202)
T KOG0292|consen  101 FHH  103 (1202)
T ss_pred             ccC
Confidence            975

>KOG0274|consensus

Probab=99.53  E-value=2.8e-13  Score=75.66  Aligned_cols=80  Identities=20%  Similarity=0.363  Sum_probs=71.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.++++|+.|.++++||..++++...+.+ |...+.++..  ....+++|+.|.+|++|++.++..+..+.+|..+|+++
T Consensus       261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  261 GDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             CCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            36789999999999999999999999997 8888888876  56677888999999999999999999999999999999


Q ss_pred             EEe
Q psy7058          81 AFC   83 (85)
Q Consensus        81 ~~~   83 (85)
                      ..+
T Consensus       338 ~~~  340 (537)
T KOG0274|consen  338 QLD  340 (537)
T ss_pred             Eec
Confidence            865

>KOG0639|consensus

Probab=99.53  E-value=2e-14  Score=78.65  Aligned_cols=81  Identities=20%  Similarity=0.359  Sum_probs=70.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +..+++..||.|.|||+.+...++.+++ |...+.||.++++|..+-+|+.|.++|.||+++++.++... ....|.++.
T Consensus       522 kvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg  599 (705)
T KOG0639|consen  522 KVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLG  599 (705)
T ss_pred             ceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecc
Confidence            4567899999999999999999999988 88889999999999999999999999999999998777665 456666666


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      +.|
T Consensus       600 ~cP  602 (705)
T KOG0639|consen  600 YCP  602 (705)
T ss_pred             cCC
Confidence            555

>KOG0310|consensus

Probab=99.53  E-value=3.9e-14  Score=76.55  Aligned_cols=83  Identities=24%  Similarity=0.388  Sum_probs=72.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+++++|...|.++++|..+...++.+.. |..++..+.|+| +...+++|++|+.+++||+.+.-....+.+|++.|++
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            67899999999999999776566667766 899999999999 4567889999999999999988876688899999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      .+|+|
T Consensus       159 g~~~~  163 (487)
T KOG0310|consen  159 GDISP  163 (487)
T ss_pred             ecccc
Confidence            99987

>KOG1539|consensus

Probab=99.51  E-value=3.7e-14  Score=80.76  Aligned_cols=81  Identities=28%  Similarity=0.405  Sum_probs=71.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      .++.+..|-.|.++|+.+.+.++.+.+ |...|++++|+|||+++++++.|++|++||+.++..+-.+. -..++.+++|
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~f~g-h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~  625 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVREFWG-HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSF  625 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHHhhc-cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEE
Confidence            456777888999999999999999988 88999999999999999999999999999999998876665 5678888888


Q ss_pred             eCC
Q psy7058          83 CDF   85 (85)
Q Consensus        83 ~~~   85 (85)
                      +|.
T Consensus       626 SPn  628 (910)
T KOG1539|consen  626 SPN  628 (910)
T ss_pred             CCC
Confidence            884

>KOG0267|consensus

Probab=99.51  E-value=4.5e-14  Score=79.55  Aligned_cols=84  Identities=20%  Similarity=0.460  Sum_probs=76.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |.+.+.++.|..+++||.+...+...+.. |...+..+.|+|+|.+++.+++|..+++||...++....|..|+..+..+
T Consensus       124 ~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl  202 (825)
T KOG0267|consen  124 GEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL  202 (825)
T ss_pred             eEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence            35678899999999999998888888887 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      .|+|+
T Consensus       203 e~hp~  207 (825)
T KOG0267|consen  203 EFHPL  207 (825)
T ss_pred             ccCch
Confidence            88874

>KOG0296|consensus

Probab=99.51  E-value=5.9e-13  Score=70.24  Aligned_cols=82  Identities=22%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +++++|+.|..-++|+..++.....+.+ |+..|.++.|+.+|.++++|+.+|.|++|...++.....+......+-=+.
T Consensus        77 ~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~  155 (399)
T KOG0296|consen   77 NLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK  155 (399)
T ss_pred             ceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE
Confidence            5789999999999999999998888777 889999999999999999999999999999999887777764445555555


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+|
T Consensus       156 WHp  158 (399)
T KOG0296|consen  156 WHP  158 (399)
T ss_pred             ecc
Confidence            655

>KOG0278|consensus

Probab=99.51  E-value=5.2e-13  Score=67.97  Aligned_cols=83  Identities=20%  Similarity=0.310  Sum_probs=65.8

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccC--------------------------------------CCcEEEEEecCCC
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTAN--------------------------------------QRWVWDAAFTLDS   44 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~   44 (85)
                      -+++++.|+.+++||.++++.+.++...+                                      +..|.+..++|+.
T Consensus       157 ~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  157 CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence            46777899999999999998877764211                                      1234556677777


Q ss_pred             CEEEEEcCCCeEEEEEcCCccccccc-cccccceeEEEEeCC
Q psy7058          45 KFLLTASSDGVARLWNIETGEVDKEY-SGHQKAITSLAFCDF   85 (85)
Q Consensus        45 ~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~   85 (85)
                      ..++.|+.|..++.||..++..+..+ ++|.++|.|++|+|.
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd  278 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD  278 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence            78888888889999999888888876 789999999999984

>KOG0303|consensus

Probab=99.51  E-value=1e-13  Score=73.85  Aligned_cols=71  Identities=25%  Similarity=0.384  Sum_probs=63.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      +.|++++.|..+.+|++.+++....+.  |...|.++.|+.+|..+++.+.|+.|++||.+.++.+..-.+|.
T Consensus       145 NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he  215 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE  215 (472)
T ss_pred             hhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence            457899999999999999999888876  88999999999999999999999999999999998776655554

>KOG0306|consensus

Probab=99.50  E-value=4.7e-13  Score=75.95  Aligned_cols=83  Identities=23%  Similarity=0.413  Sum_probs=78.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|+.+--|.++++|-+.+.+....+.+ |.-|+.++..+||+..++||+.|+.|++|-+.-|.+.+.+-+|.+.|.++
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV  598 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence            57889999999999999999998888888 99999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|-|
T Consensus       599 ~F~P  602 (888)
T KOG0306|consen  599 QFLP  602 (888)
T ss_pred             EEcc
Confidence            9977

>KOG0293|consensus

Probab=99.49  E-value=2e-13  Score=73.24  Aligned_cols=85  Identities=22%  Similarity=0.395  Sum_probs=69.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccC-CCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTAN-QRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |+++++.-.+..+.+||+.....+.++.+.. ...+..-+|.. +..++++|++|+.|+||+..+++++..+.+|...|+
T Consensus       407 ~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN  486 (519)
T KOG0293|consen  407 GKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN  486 (519)
T ss_pred             CcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence            3456666778899999999777777777622 23466667765 558899999999999999999999999999999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       487 cVswNP~  493 (519)
T KOG0293|consen  487 CVSWNPA  493 (519)
T ss_pred             EEecCCC
Confidence            9999983

>KOG0278|consensus

Probab=99.49  E-value=4e-13  Score=68.38  Aligned_cols=66  Identities=17%  Similarity=0.252  Sum_probs=59.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      +.++.|++|..++.||..+++.+.....+|.++|.+++|+|+|...++|++||+|++|....++..
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            357899999999999999999998874458899999999999999999999999999999876644

>KOG0310|consensus

Probab=99.49  E-value=9.6e-13  Score=71.35  Aligned_cols=81  Identities=21%  Similarity=0.343  Sum_probs=67.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCc-cccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETG-EVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~~   79 (85)
                      ..+++|+.|..+++||+.+......+.+ |...+.+.+++| .++++++|+-||.|++||++.. ..+.++. |..+|-.
T Consensus       124 t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~  201 (487)
T KOG0310|consen  124 TMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVES  201 (487)
T ss_pred             eEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceee
Confidence            4578899999999999998886445555 899999999999 4668999999999999999987 5666676 7888877


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+-|
T Consensus       202 vl~lp  206 (487)
T KOG0310|consen  202 VLALP  206 (487)
T ss_pred             EEEcC
Confidence            76644

>KOG1034|consensus

Probab=99.49  E-value=2.4e-13  Score=71.05  Aligned_cols=82  Identities=23%  Similarity=0.325  Sum_probs=72.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCccccccc---cccccce
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEY---SGHQKAI   77 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~v   77 (85)
                      .+++.++.-|.|++.|..+++....+.+ |...|+.+.+.|+. +++++++.|..|++|++++..++..+   .+|.+.|
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            3688899999999999999999988888 88899999999965 67889999999999999999887665   4789999


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      .++.|++
T Consensus       185 LSvD~~~  191 (385)
T KOG1034|consen  185 LSVDFSL  191 (385)
T ss_pred             EEEEEcC
Confidence            9999975

>KOG0294|consensus

Probab=99.49  E-value=6.1e-13  Score=69.22  Aligned_cols=80  Identities=24%  Similarity=0.366  Sum_probs=65.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      .|++|+.||.|.+|++..++.+..++. |...|+.++.+|.+++.++.+.|+.++.|++-.++....++- ...-..+.|
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~-H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w  176 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKA-HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSW  176 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecc-cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEE
Confidence            689999999999999999999999988 777799999999999999999999999999988875544441 122223666


Q ss_pred             eC
Q psy7058          83 CD   84 (85)
Q Consensus        83 ~~   84 (85)
                      +|
T Consensus       177 ~~  178 (362)
T KOG0294|consen  177 SP  178 (362)
T ss_pred             cC
Confidence            55

>KOG0267|consensus

Probab=99.48  E-value=2.4e-14  Score=80.56  Aligned_cols=82  Identities=24%  Similarity=0.441  Sum_probs=75.7

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      +|++|+.+|.|++||+...+.++.+.+ |...+.++.|+|-+.+++.++.|..+.+||++...+...+.+|...+..++|
T Consensus        84 LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l  162 (825)
T KOG0267|consen   84 LLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL  162 (825)
T ss_pred             hhcccccCCceeeeehhhhhhhhhhhc-cccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEee
Confidence            578899999999999999998888877 7778999999999999999999999999999988899999999999999999


Q ss_pred             eCC
Q psy7058          83 CDF   85 (85)
Q Consensus        83 ~~~   85 (85)
                      +|+
T Consensus       163 sP~  165 (825)
T KOG0267|consen  163 SPD  165 (825)
T ss_pred             cCC
Confidence            985

>KOG1446|consensus

Probab=99.48  E-value=1.3e-12  Score=67.72  Aligned_cols=85  Identities=22%  Similarity=0.320  Sum_probs=71.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCC--CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc-cccce
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQ--RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v   77 (85)
                      |+.++.+...+.+++.|..+|.....+.....  ..-...++.||++++++++.||+|.+|++.++.....+.+ +..++
T Consensus       199 GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~  278 (311)
T KOG1446|consen  199 GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV  278 (311)
T ss_pred             CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc
Confidence            67888889999999999999998777765211  1125678999999999999999999999999999888887 68899


Q ss_pred             eEEEEeCC
Q psy7058          78 TSLAFCDF   85 (85)
Q Consensus        78 ~~~~~~~~   85 (85)
                      .++.|+|.
T Consensus       279 ~~~~fnP~  286 (311)
T KOG1446|consen  279 SCVRFNPR  286 (311)
T ss_pred             cccccCCc
Confidence            99999983

>KOG0644|consensus

Probab=99.48  E-value=2.5e-14  Score=81.85  Aligned_cols=83  Identities=25%  Similarity=0.398  Sum_probs=78.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |.++++++.|..+++|...+..+.....+ |...++.++.+.+..++++++-|..|++|.++.+.++..+.+|++.|+++
T Consensus       202 g~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai  280 (1113)
T KOG0644|consen  202 GRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI  280 (1113)
T ss_pred             cceEeecCccceeeeeeccchhhhccCCC-CccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence            56899999999999999999999999888 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       281 afsP  284 (1113)
T KOG0644|consen  281 AFSP  284 (1113)
T ss_pred             ccCc
Confidence            9998

>KOG0646|consensus

Probab=99.47  E-value=1.1e-12  Score=70.92  Aligned_cols=52  Identities=19%  Similarity=0.331  Sum_probs=47.4

Q ss_pred             cEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      .|+|++++-||..+++|+.||.+++||+.+.++++++....++|+.+.++|+
T Consensus       279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            7999999999999999999999999999999999988877889988888653

>KOG0305|consensus

Probab=99.46  E-value=1.1e-12  Score=72.08  Aligned_cols=83  Identities=20%  Similarity=0.235  Sum_probs=70.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEc--CCCeEEEEEcCCccccccccccccce
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTAS--SDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      +.++|+|++|+.+.+||.....+...+.. |...+..++|+| ....||+|+  .|+.|++||...+..+.... ....|
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQV  390 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQV  390 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEec-cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCce
Confidence            46899999999999999987777777777 888899999999 677788764  68999999999998887776 56788


Q ss_pred             eEEEEeCC
Q psy7058          78 TSLAFCDF   85 (85)
Q Consensus        78 ~~~~~~~~   85 (85)
                      ..+.|++.
T Consensus       391 csL~Wsk~  398 (484)
T KOG0305|consen  391 CSLIWSKK  398 (484)
T ss_pred             eeEEEcCC
Confidence            88888763

>KOG0973|consensus

Probab=99.46  E-value=7.4e-13  Score=76.78  Aligned_cols=83  Identities=27%  Similarity=0.415  Sum_probs=72.8

Q ss_pred             CceeEEeeCCCcEEEeeCCC------------------ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTED------------------FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |++||+|+.|+.+.+|+...                  .+....+.+ |...|..++|+|++.++++++.|+.|.+|+.+
T Consensus        81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccc
Confidence            68899999999999998762                  123444555 88889999999999999999999999999999


Q ss_pred             CccccccccccccceeEEEEeC
Q psy7058          63 TGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        63 ~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      +.+.+..+.+|...|..+.|.|
T Consensus       160 tF~~~~vl~~H~s~VKGvs~DP  181 (942)
T KOG0973|consen  160 TFELLKVLRGHQSLVKGVSWDP  181 (942)
T ss_pred             cceeeeeeecccccccceEECC
Confidence            9999999999999999999977

>KOG0772|consensus

Probab=99.46  E-value=5.8e-13  Score=73.11  Aligned_cols=83  Identities=25%  Similarity=0.335  Sum_probs=61.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeee-----ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc---ccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELG-----TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV---DKEYSGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~   73 (85)
                      +.+++++.|+++++||+...+....+.     +...-++....|++++..+++++.||.|.+|+....-.   ...-.+|
T Consensus       282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH  361 (641)
T KOG0772|consen  282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH  361 (641)
T ss_pred             cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc
Confidence            357899999999999998765432221     12334678899999999999999999999999754322   1223356


Q ss_pred             cc--ceeEEEEeC
Q psy7058          74 QK--AITSLAFCD   84 (85)
Q Consensus        74 ~~--~v~~~~~~~   84 (85)
                      ..  .|++++||+
T Consensus       362 ~~g~~Itsi~FS~  374 (641)
T KOG0772|consen  362 LPGQDITSISFSY  374 (641)
T ss_pred             CCCCceeEEEecc
Confidence            55  999999986

>KOG0306|consensus

Probab=99.45  E-value=5.6e-13  Score=75.63  Aligned_cols=83  Identities=23%  Similarity=0.340  Sum_probs=77.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ++++||+.|..+++|-+.-|.+-..+.+ |...|.++.|-|+...+.+++.|+.++.||-..-..++++.+|...|++++
T Consensus       563 klivTgSADKnVKiWGLdFGDCHKS~fA-HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa  641 (888)
T KOG0306|consen  563 KLIVTGSADKNVKIWGLDFGDCHKSFFA-HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA  641 (888)
T ss_pred             CeEEeccCCCceEEeccccchhhhhhhc-ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE
Confidence            5789999999999999999999888887 888899999999999999999999999999999999999999999999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      .+|.
T Consensus       642 v~~~  645 (888)
T KOG0306|consen  642 VSPN  645 (888)
T ss_pred             EcCC
Confidence            8774

>KOG1407|consensus

Probab=99.45  E-value=1.3e-12  Score=66.73  Aligned_cols=80  Identities=16%  Similarity=0.270  Sum_probs=70.1

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      ++...-.|++.+...+..+++..+.. |+....++.|+|+|+++++|+.|..+.+||+...-+++.+.-+.-+|+.++||
T Consensus       162 Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS  240 (313)
T KOG1407|consen  162 FFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS  240 (313)
T ss_pred             EEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence            33344457888888888889999888 88888999999999999999999999999999999999999899999999997


Q ss_pred             C
Q psy7058          84 D   84 (85)
Q Consensus        84 ~   84 (85)
                      .
T Consensus       241 ~  241 (313)
T KOG1407|consen  241 H  241 (313)
T ss_pred             c
Confidence            4

>KOG0313|consensus

Probab=99.45  E-value=4.3e-13  Score=71.08  Aligned_cols=80  Identities=29%  Similarity=0.465  Sum_probs=70.2

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc---ccccccccccceeE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE---VDKEYSGHQKAITS   79 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~v~~   79 (85)
                      .+.+++.|++|+.||+.++.....+..  +..++++..+|...++++|+.|..+++||.+.+.   ..+++-+|+.=|..
T Consensus       273 v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss  350 (423)
T KOG0313|consen  273 VIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS  350 (423)
T ss_pred             ceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence            468999999999999999998888775  4569999999999999999999999999998653   44678899999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.|+|
T Consensus       351 vkwsp  355 (423)
T KOG0313|consen  351 VKWSP  355 (423)
T ss_pred             eecCC
Confidence            99987

>KOG2110|consensus

Probab=99.45  E-value=3.3e-12  Score=67.58  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=66.1

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCe-EEEEEcCCcccccccccc--ccceeEEEEeCC
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGV-ARLWNIETGEVDKEYSGH--QKAITSLAFCDF   85 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~   85 (85)
                      ..|.+.+||+.+.++...+.. |.+.+.+++|+++|.+++++++.|+ ||+|.+.+++.+.+|+-.  .-.|.+++|+|.
T Consensus       151 t~GdV~l~d~~nl~~v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             CCceEEEEEcccceeeeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            357899999999999999986 9999999999999999999999885 899999999998888733  346778888873

>KOG0270|consensus

Probab=99.45  E-value=2.7e-13  Score=72.85  Aligned_cols=85  Identities=20%  Similarity=0.414  Sum_probs=66.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCc---eeeeeee-----------------ccCCCcEEEEEecCC-CCEEEEEcCCCeEEEE
Q psy7058           1 MGLLATTSADQTARIWNTEDF---SLVRELG-----------------TANQRWVWDAAFTLD-SKFLLTASSDGVARLW   59 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~---~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~   59 (85)
                      |+++|.|..+..|.+||+.-.   .+...+.                 ..|...+..+.|+.. ...+++|+.|.+|.+|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            689999999999999998421   1111111                 013444556777774 4678899999999999


Q ss_pred             EcCCccccccccccccceeEEEEeCC
Q psy7058          60 NIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        60 ~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      |+.++++...+..|...|.+++|+|+
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~  297 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPY  297 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCC
Confidence            99999999999999999999999985

>KOG0646|consensus

Probab=99.45  E-value=8.5e-13  Score=71.28  Aligned_cols=82  Identities=20%  Similarity=0.269  Sum_probs=70.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC---------Ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE---------TGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~   71 (85)
                      |.+|+.|.-.+.|++|.+.+|.....+.. |-..|+++.|+.|+.++++++.||.|.+|.+.         +.+++..+.
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~  171 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS  171 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence            45777777999999999999999998876 76779999999999999999999999999874         235677788


Q ss_pred             ccccceeEEEEe
Q psy7058          72 GHQKAITSLAFC   83 (85)
Q Consensus        72 ~~~~~v~~~~~~   83 (85)
                      .|.-+|+++...
T Consensus       172 ~HtlsITDl~ig  183 (476)
T KOG0646|consen  172 DHTLSITDLQIG  183 (476)
T ss_pred             cCcceeEEEEec
Confidence            899999887653

>KOG1408|consensus

Probab=99.44  E-value=3.1e-12  Score=72.90  Aligned_cols=83  Identities=22%  Similarity=0.340  Sum_probs=76.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc--CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA--NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +++++++.|..|++||+.+++....+++.  +.+....+...|.|.++++.+.|+++.++|..++++...+-+|.+.|+.
T Consensus       609 k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG  688 (1080)
T KOG1408|consen  609 KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTG  688 (1080)
T ss_pred             ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheee
Confidence            57899999999999999999999988873  4567889999999999999999999999999999999999999999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.|.+
T Consensus       689 ~kF~n  693 (1080)
T KOG1408|consen  689 VKFLN  693 (1080)
T ss_pred             eeecc
Confidence            99976

>KOG1034|consensus

Probab=99.44  E-value=1.5e-12  Score=68.19  Aligned_cols=62  Identities=24%  Similarity=0.475  Sum_probs=56.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec--cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      +++++++.|..|++|++++..++..+.+  +|...|.++.|++++..+++++.|..+++|++..
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            5899999999999999999999887765  4778899999999999999999999999999973

>KOG1445|consensus

Probab=99.44  E-value=2.2e-13  Score=76.59  Aligned_cols=83  Identities=19%  Similarity=0.301  Sum_probs=69.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCc-------eeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      ++|+.++.|+.|++|.+...       ++...+.. |...|.+++|+| ....+++++.|.+|++||+.+++....+.+|
T Consensus       641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH  719 (1012)
T KOG1445|consen  641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH  719 (1012)
T ss_pred             HHeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence            46899999999999998643       22223333 777899999999 5677889999999999999999999999999


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      .+.|..++|+|.
T Consensus       720 tdqIf~~AWSpd  731 (1012)
T KOG1445|consen  720 TDQIFGIAWSPD  731 (1012)
T ss_pred             cCceeEEEECCC
Confidence            999999999984

>KOG0647|consensus

Probab=99.44  E-value=1.8e-12  Score=67.25  Aligned_cols=69  Identities=13%  Similarity=0.250  Sum_probs=57.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC--EEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK--FLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |..+++++.|+.+++||+.+++. .++.. |..++..+.|.+...  .+++|+-|++|++||.++.+++.++.
T Consensus        84 gskVf~g~~Dk~~k~wDL~S~Q~-~~v~~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~  154 (347)
T KOG0647|consen   84 GSKVFSGGCDKQAKLWDLASGQV-SQVAA-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ  154 (347)
T ss_pred             CceEEeeccCCceEEEEccCCCe-eeeee-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee
Confidence            56789999999999999999855 34444 888999999988655  78999999999999999887766554

>KOG0300|consensus

Probab=99.44  E-value=7.9e-13  Score=69.36  Aligned_cols=82  Identities=24%  Similarity=0.378  Sum_probs=73.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-ccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~   79 (85)
                      |+.+++++-|.+..+||+.+++++..+.+ |...++.++-+|..+++++.+.|.+.++||++... .+..|++|.+.|++
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence            56789999999999999999999999887 88889999999999999999999999999998653 45679999999999


Q ss_pred             EEEe
Q psy7058          80 LAFC   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      ..|+
T Consensus       363 ~vF~  366 (481)
T KOG0300|consen  363 VVFN  366 (481)
T ss_pred             EEEe
Confidence            9886

>KOG0322|consensus

Probab=99.44  E-value=2.4e-12  Score=65.87  Aligned_cols=52  Identities=23%  Similarity=0.149  Sum_probs=48.3

Q ss_pred             cEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      .+..+...||++.+++++.|+.||+|..++++++..+..|...|++++|+|.
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence            3566888999999999999999999999999999999999999999999984

>KOG0290|consensus

Probab=99.43  E-value=4.3e-12  Score=65.77  Aligned_cols=62  Identities=29%  Similarity=0.488  Sum_probs=50.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCcee--eeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSL--VRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   63 (85)
                      +++.+++-|.+..+||+.++..  +.+...+|...+..++|...+ ..|++++.||.+|+||++.
T Consensus       164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~  228 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS  228 (364)
T ss_pred             ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence            5788999999999999998633  333333488899999999854 5789999999999999973

>KOG0268|consensus

Probab=99.42  E-value=4.7e-13  Score=70.79  Aligned_cols=80  Identities=11%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc-cccccccccccceeEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG-EVDKEYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~~~~   81 (85)
                      .|++++.|+.|.+||++...++.++....  .-+.++|+|.+-.+.++++|..++.||++.. .++..+.+|..+|.++.
T Consensus       202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd  279 (433)
T KOG0268|consen  202 ILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD  279 (433)
T ss_pred             heeeeccCCceEEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence            57888899999999999999988877533  3688999998888999999999999999875 56778889999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |||
T Consensus       280 fsp  282 (433)
T KOG0268|consen  280 FSP  282 (433)
T ss_pred             cCC
Confidence            998

>KOG0772|consensus

Probab=99.41  E-value=6e-13  Score=73.06  Aligned_cols=84  Identities=19%  Similarity=0.291  Sum_probs=62.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCc--eeeeeeeccCCC--cEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc-cccccc--c
Q psy7058           1 MGLLATTSADQTARIWNTEDF--SLVRELGTANQR--WVWDAAFTLDSKFLLTASSDGVARLWNIETGEV-DKEYSG--H   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~--~   73 (85)
                      |+++|+|..||.|.+|+..+.  .+...+..+|..  .|+++.|+++|++|++-+.|.++++||+++.+. +....+  .
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t  408 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT  408 (641)
T ss_pred             cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc
Confidence            467899999999999998654  344455555655  799999999999999999999999999997653 333222  1


Q ss_pred             ccceeEEEEeC
Q psy7058          74 QKAITSLAFCD   84 (85)
Q Consensus        74 ~~~v~~~~~~~   84 (85)
                      .-+-+.+.|||
T Consensus       409 ~~~~tdc~FSP  419 (641)
T KOG0772|consen  409 PFPGTDCCFSP  419 (641)
T ss_pred             cCCCCccccCC
Confidence            22445566666

>KOG0299|consensus

Probab=99.40  E-value=1.5e-12  Score=70.36  Aligned_cols=80  Identities=24%  Similarity=0.385  Sum_probs=72.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++|+.|..+.+|+..+.+.+..+.+ |...|.+++|-.....+++++.|+.+++|++.....+.++-+|++.|..+
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            57899999999999999999999998877 88999999998888889999999999999999988888888999888766


Q ss_pred             E
Q psy7058          81 A   81 (85)
Q Consensus        81 ~   81 (85)
                      .
T Consensus       293 d  293 (479)
T KOG0299|consen  293 D  293 (479)
T ss_pred             c
Confidence            4

>KOG0641|consensus

Probab=99.40  E-value=1.4e-11  Score=62.24  Aligned_cols=84  Identities=15%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc----cccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG----EVDKEYSGHQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~   76 (85)
                      |++|++|..|....+||++.+.++.++.. |...|.++.|+|...++++++-|..|++-|++..    .++....+|.+.
T Consensus       243 grll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk  321 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK  321 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence            57899999999999999999999998887 8888999999999999999999999999998632    233445578889


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      +-.+.|+|.
T Consensus       322 ~i~~rwh~~  330 (350)
T KOG0641|consen  322 AIQCRWHPQ  330 (350)
T ss_pred             eEEEEecCc
Confidence            989999874

>KOG1007|consensus

Probab=99.39  E-value=7.8e-12  Score=64.82  Aligned_cols=81  Identities=27%  Similarity=0.544  Sum_probs=63.6

Q ss_pred             eeEEeeCCCcEEEeeCCCcee-eeeeeccCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCc----------------
Q psy7058           3 LLATTSADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETG----------------   64 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~----------------   64 (85)
                      .|++|+.|+.+++||.+..+. +..+.. |...+++++|+|. ..++++++.|..+.++....-                
T Consensus       229 ~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e  307 (370)
T KOG1007|consen  229 ILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE  307 (370)
T ss_pred             EEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence            589999999999999987654 445554 8899999999995 567789999999999865311                


Q ss_pred             -------------cccccccccccceeEEEEeC
Q psy7058          65 -------------EVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        65 -------------~~~~~~~~~~~~v~~~~~~~   84 (85)
                                   ..+.++..|++.|++++|+.
T Consensus       308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSs  340 (370)
T KOG1007|consen  308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSS  340 (370)
T ss_pred             chhhHHhcccccccccccccccccceEEEeecc
Confidence                         12346678999999999973

>KOG4283|consensus

Probab=99.39  E-value=6.8e-12  Score=65.28  Aligned_cols=81  Identities=19%  Similarity=0.391  Sum_probs=69.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCC---CCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD---SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      .+.+++-|.++++||+.+.+....+..  +..|.+-+++|-   ..++++|..+-.|++.|+.++...-.+.+|.+.|.+
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~~F~m--e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAVDFKM--EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             eeecccccceEEEeecccceeeEEeec--CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence            467889999999999999988887774  556888888883   456778888999999999999999999999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      +.|+|.
T Consensus       194 V~Wsp~  199 (397)
T KOG4283|consen  194 VEWSPS  199 (397)
T ss_pred             EEeccC
Confidence            999983

>KOG0649|consensus

Probab=99.39  E-value=6.6e-12  Score=63.85  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=58.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .++.++-|+.++-||+.+++..+.+++ |...+.++........+++|++||++|+||.++++....+.
T Consensus       128 Si~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             cEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            456667899999999999999999998 99999999875566678899999999999999998776654

>KOG0639|consensus

Probab=99.39  E-value=1.5e-12  Score=71.60  Aligned_cols=84  Identities=15%  Similarity=0.307  Sum_probs=68.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+.|++|+...++.+||+....+.-..... .......++.+||.+.+++++.||.|.|||+.+...++.|++|.+.+.|
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGasc  556 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC  556 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCcee
Confidence            567899999999999999866554332221 1233566888999999999999999999999999999999999999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +..++
T Consensus       557 Idis~  561 (705)
T KOG0639|consen  557 IDISK  561 (705)
T ss_pred             EEecC
Confidence            98775

>KOG0299|consensus

Probab=99.36  E-value=1e-11  Score=67.24  Aligned_cols=82  Identities=26%  Similarity=0.349  Sum_probs=69.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceee-eee---------------e-ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLV-REL---------------G-TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~-~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      .++++++.+++|.-|++.+++.. ..+               . ..|...+.++++++|++++++++.|..+.||+..+.
T Consensus       155 ~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~  234 (479)
T KOG0299|consen  155 KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL  234 (479)
T ss_pred             cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCccc
Confidence            46789999999999999877633 111               0 125567899999999999999999999999999999


Q ss_pred             cccccccccccceeEEEEe
Q psy7058          65 EVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus        65 ~~~~~~~~~~~~v~~~~~~   83 (85)
                      +.+..+.+|.+.|.+++|-
T Consensus       235 ehv~~~~ghr~~V~~L~fr  253 (479)
T KOG0299|consen  235 EHVKVFKGHRGAVSSLAFR  253 (479)
T ss_pred             chhhcccccccceeeeeee
Confidence            9999999999999998874

>KOG0640|consensus

Probab=99.36  E-value=1.9e-11  Score=64.12  Aligned_cols=84  Identities=15%  Similarity=0.303  Sum_probs=69.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec--cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-cc-ccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GH-QKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~   76 (85)
                      |++|+.|.....+++||+.+-++...-..  +|...|+++.+++.+++.++++.||.|++||-.+++++.++. .| ...
T Consensus       228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse  307 (430)
T KOG0640|consen  228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE  307 (430)
T ss_pred             CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence            67899999999999999999887655433  467889999999999999999999999999999999988876 33 346


Q ss_pred             eeEEEEeC
Q psy7058          77 ITSLAFCD   84 (85)
Q Consensus        77 v~~~~~~~   84 (85)
                      |.+..|+.
T Consensus       308 vcSa~Ftk  315 (430)
T KOG0640|consen  308 VCSAVFTK  315 (430)
T ss_pred             eeeEEEcc
Confidence            66666643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.36  E-value=1.7e-11  Score=46.16  Aligned_cols=38  Identities=32%  Similarity=0.565  Sum_probs=34.3

Q ss_pred             eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEE
Q psy7058          22 SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN   60 (85)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (85)
                      ++...+.. |...|++++|+|++..+++++.|+.|++||
T Consensus         2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            55667776 888999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0302|consensus

Probab=99.36  E-value=7e-12  Score=66.72  Aligned_cols=59  Identities=19%  Similarity=0.409  Sum_probs=51.0

Q ss_pred             eeEEeeCCCcEEEeeCCCc---eeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcC
Q psy7058           3 LLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   62 (85)
                      +|++|+.||.+++||++..   +++..+.. |..+|+++.|+| +...+++++.|..|.+||+.
T Consensus       316 lLasG~DdGt~~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  316 LLASGGDDGTLSIWDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             eeeecCCCceEEEEEhhhccCCCcceeEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            6899999999999999854   56667766 889999999999 56778888999999999984

>KOG0303|consensus

Probab=99.35  E-value=6.1e-12  Score=67.32  Aligned_cols=81  Identities=28%  Similarity=0.421  Sum_probs=68.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCc-------eeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      +.+|+|+.|.++.+|++...       +++..+.+ |...+-.+.|+|.. +.+++++.|..|.+|++.++..+.++. |
T Consensus        95 ~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-h  172 (472)
T KOG0303|consen   95 CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-H  172 (472)
T ss_pred             ceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-C
Confidence            45899999999999999754       33445555 88889999999964 668899999999999999999998888 9


Q ss_pred             ccceeEEEEeC
Q psy7058          74 QKAITSLAFCD   84 (85)
Q Consensus        74 ~~~v~~~~~~~   84 (85)
                      .+.|.+++||-
T Consensus       173 pd~i~S~sfn~  183 (472)
T KOG0303|consen  173 PDMVYSMSFNR  183 (472)
T ss_pred             CCeEEEEEecc
Confidence            99999999974

>KOG2055|consensus

Probab=99.35  E-value=2.5e-11  Score=65.93  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=67.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC------ccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET------GEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~   74 (85)
                      |+.|++++.+|.|.+||++...+..++.....-.-++++.++++.++++|+..|.|.|||..+      .+++..+.--.
T Consensus       356 sk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt  435 (514)
T KOG2055|consen  356 SKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT  435 (514)
T ss_pred             CcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence            356788888899999999998888887753333357788889999999999999999999653      35666666566


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..|++++|||.
T Consensus       436 t~Itsl~Fn~d  446 (514)
T KOG2055|consen  436 TAITSLQFNHD  446 (514)
T ss_pred             eeeeeeeeCcc
Confidence            78899999873

>KOG2096|consensus

Probab=99.35  E-value=1.3e-11  Score=64.81  Aligned_cols=82  Identities=24%  Similarity=0.407  Sum_probs=68.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC---Cc-----ccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE---TG-----EVDKEYSGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~-----~~~~~~~~~   73 (85)
                      .++.+++.|..|.+|+++ |+.+..+.. ........+++|+|+++++++-..-+++|.+-   .+     ....++.+|
T Consensus       200 k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH  277 (420)
T KOG2096|consen  200 KYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH  277 (420)
T ss_pred             eEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence            578999999999999999 888888776 44446678899999999999999999999863   22     345577899


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      ...|...+|||.
T Consensus       278 ~saV~~~aFsn~  289 (420)
T KOG2096|consen  278 QSAVLAAAFSNS  289 (420)
T ss_pred             hhheeeeeeCCC
Confidence            999999999874

>KOG4283|consensus

Probab=99.35  E-value=3e-11  Score=62.94  Aligned_cols=80  Identities=25%  Similarity=0.403  Sum_probs=64.8

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE-EEEEcCCCeEEEEEcCCc-ccccc-----------
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF-LLTASSDGVARLWNIETG-EVDKE-----------   69 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~~~-----------   69 (85)
                      ++|+|.++-.+++-|+.++.....+.+ |...|..+.|+|...+ +++++.|+.+++||++.. .++..           
T Consensus       160 LiA~gtr~~~VrLCDi~SGs~sH~LsG-Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~  238 (397)
T KOG4283|consen  160 LIAAGTRDVQVRLCDIASGSFSHTLSG-HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI  238 (397)
T ss_pred             EEEEecCCCcEEEEeccCCcceeeecc-ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence            578888999999999999999999988 8889999999997766 678999999999999754 22222           


Q ss_pred             ---ccccccceeEEEEe
Q psy7058          70 ---YSGHQKAITSLAFC   83 (85)
Q Consensus        70 ---~~~~~~~v~~~~~~   83 (85)
                         -..|.+.++.++|+
T Consensus       239 ~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  239 LKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             ccccccccceeeeeeec
Confidence               22466777777775

>KOG2111|consensus

Probab=99.34  E-value=3.1e-11  Score=63.02  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             EeeCCCcEEEeeCCCcee--eeeeeccCCCcEEEEEecCCCCEEEEEcCCCe-EEEEEcCCcccccccc--ccccceeEE
Q psy7058           6 TTSADQTARIWNTEDFSL--VRELGTANQRWVWDAAFTLDSKFLLTASSDGV-ARLWNIETGEVDKEYS--GHQKAITSL   80 (85)
Q Consensus         6 ~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~--~~~~~v~~~   80 (85)
                      .|..-|.+.+-|+...+.  +..+.+ |...|.+++++.+|..+|+++..|+ |||||..++..+.+++  .....|+++
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            445567888888875544  344555 8889999999999999999999985 8999999999998887  345789999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|||+
T Consensus       233 aFSp~  237 (346)
T KOG2111|consen  233 AFSPN  237 (346)
T ss_pred             EeCCC
Confidence            99985

>KOG2111|consensus

Probab=99.34  E-value=3.9e-11  Score=62.69  Aligned_cols=64  Identities=30%  Similarity=0.453  Sum_probs=56.1

Q ss_pred             CceeEEeeCCCc-EEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           1 MGLLATTSADQT-ARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         1 g~~l~~~~~~~~-i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      |.++|+++..|+ |++||+.+++.+..++.+ ....|.+++|+|+..+++..++.|++.||.++..
T Consensus       193 Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  193 GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            578999998886 789999999999888764 3467999999999999999999999999998754

>KOG1332|consensus

Probab=99.33  E-value=1.2e-11  Score=62.86  Aligned_cols=84  Identities=23%  Similarity=0.292  Sum_probs=65.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeee-ccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCc---cccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETG---EVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~   74 (85)
                      |+.|++++.|+.+.+|.-.++.-..... ..|...+++++|.|.  |-.|+.+++||.|.+.+.+..   ...+....|.
T Consensus        70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~  149 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE  149 (299)
T ss_pred             CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence            6789999999999999987763322211 237788999999995  567889999999999998754   2233455789


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      -.|++++|.|
T Consensus       150 ~GvnsVswap  159 (299)
T KOG1332|consen  150 IGVNSVSWAP  159 (299)
T ss_pred             cccceeeecC
Confidence            9999999987

>KOG1445|consensus

Probab=99.33  E-value=1.6e-12  Score=73.24  Aligned_cols=63  Identities=24%  Similarity=0.416  Sum_probs=57.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      +.|++++.|-+|++||+.+++...++.+ |...|..++|+|+|+.+++.+.|+++++|+.++..
T Consensus       691 dvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  691 DVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             hHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            3578999999999999999998888887 88999999999999999999999999999987653

>KOG0308|consensus

Probab=99.33  E-value=1.8e-11  Score=68.79  Aligned_cols=83  Identities=18%  Similarity=0.365  Sum_probs=69.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCcee--eeee--------eccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSL--VREL--------GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .++++|+-|+.|.+||+.++..  +.+.        ..+....+.+++.++.|..+++|+..+.+++||.++.+.+..++
T Consensus       131 ~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr  210 (735)
T KOG0308|consen  131 ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR  210 (735)
T ss_pred             eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee
Confidence            4689999999999999997733  2222        11245678999999999999999999999999999999999999


Q ss_pred             ccccceeEEEEeC
Q psy7058          72 GHQKAITSLAFCD   84 (85)
Q Consensus        72 ~~~~~v~~~~~~~   84 (85)
                      +|.+.|+.+..++
T Consensus       211 GHTdNVr~ll~~d  223 (735)
T KOG0308|consen  211 GHTDNVRVLLVND  223 (735)
T ss_pred             ccccceEEEEEcC
Confidence            9999999887664

>KOG2445|consensus

Probab=99.32  E-value=8.3e-11  Score=61.42  Aligned_cols=83  Identities=19%  Similarity=0.385  Sum_probs=64.7

Q ss_pred             CceeEEeeCCCcEEEeeCCC----ceeeeeeeccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCc---------c
Q psy7058           1 MGLLATTSADQTARIWNTED----FSLVRELGTANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETG---------E   65 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~---------~   65 (85)
                      |+++++|+.|+++++||...    .......+. |.+.|..+.|.+.  |+.+++++.|+++.||.-...         .
T Consensus        25 GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv  103 (361)
T KOG2445|consen   25 GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV  103 (361)
T ss_pred             CceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence            68899999999999999653    344555565 8888999999773  899999999999999986321         1


Q ss_pred             ccccccccccceeEEEEeC
Q psy7058          66 VDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        66 ~~~~~~~~~~~v~~~~~~~   84 (85)
                      ...++......|++++|.|
T Consensus       104 ~~ttl~DsrssV~DV~FaP  122 (361)
T KOG2445|consen  104 RRTTLVDSRSSVTDVKFAP  122 (361)
T ss_pred             EEEEeecCCcceeEEEecc
Confidence            2334555678899999987

>KOG1408|consensus

Probab=99.32  E-value=1.8e-11  Score=69.88  Aligned_cols=80  Identities=19%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeee---------------------------c---------cCCCcEEEEEecCCCCEE
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELG---------------------------T---------ANQRWVWDAAFTLDSKFL   47 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~---------------------------~---------~~~~~~~~~~~~~~~~~~   47 (85)
                      +.+++.|++|++||+..+..-..+.                           .         .....+.+++++|+|+++
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL  474 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL  474 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence            6899999999999987521111100                           0         012347899999999999


Q ss_pred             EEEcCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058          48 LTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus        48 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      ++|+.-|.+++|++.+.+....+..|+..|.|+.|+
T Consensus       475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS  510 (1080)
T KOG1408|consen  475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYS  510 (1080)
T ss_pred             cccCccCceEEEEehhhhhhhheecccceeEEEeec
Confidence            999999999999999999888999999999999986

>KOG1188|consensus

Probab=99.31  E-value=2.8e-11  Score=63.71  Aligned_cols=84  Identities=15%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc-CC-CcEEEEEecCCCCEEEEEc----CCCeEEEEEcCCccc-cccc-ccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA-NQ-RWVWDAAFTLDSKFLLTAS----SDGVARLWNIETGEV-DKEY-SGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~~~~-~~~   73 (85)
                      ..+.+++.||.|++||++......++... ++ .+..+++.+-.+..+++|.    .+-.+.+||+++.+. +..+ ..|
T Consensus        85 h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH  164 (376)
T KOG1188|consen   85 HGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH  164 (376)
T ss_pred             CeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc
Confidence            35789999999999999987655544432 32 4567777766777887775    356899999998765 5544 479


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      .+.|++++|+|.
T Consensus       165 ~DDVT~lrFHP~  176 (376)
T KOG1188|consen  165 NDDVTQLRFHPS  176 (376)
T ss_pred             cCcceeEEecCC
Confidence            999999999985

>KOG0973|consensus

Probab=99.31  E-value=2.1e-11  Score=71.06  Aligned_cols=84  Identities=21%  Similarity=0.368  Sum_probs=66.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc------c
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH------Q   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~   74 (85)
                      +.++++++.|+.|.+|+..+.+....+.+ |...+..+.|.|-|+++++-++|++|++|++.+-.....+.++      .
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~  219 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFELLKVLRG-HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT  219 (942)
T ss_pred             ccEEEEecccceEEEEccccceeeeeeec-ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence            35799999999999999999988888887 8889999999999999999999999999997654333333222      2


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      .-.+-++|||.
T Consensus       220 T~f~RlSWSPD  230 (942)
T KOG0973|consen  220 TFFLRLSWSPD  230 (942)
T ss_pred             ceeeecccCCC
Confidence            23455667763

>KOG1009|consensus

Probab=99.31  E-value=1.5e-11  Score=65.84  Aligned_cols=83  Identities=23%  Similarity=0.452  Sum_probs=69.7

Q ss_pred             CceeEEeeCCCcEEEeeCC--------C--------ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           1 MGLLATTSADQTARIWNTE--------D--------FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      |+.|++|+.++.+.+|...        +        ......+.+ |...+..++|++++.++++++-|..+++||+..+
T Consensus        77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccc
Confidence            5789999999999999765        2        111222333 6677899999999999999999999999999999


Q ss_pred             cccccccccccceeEEEEeC
Q psy7058          65 EVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        65 ~~~~~~~~~~~~v~~~~~~~   84 (85)
                      +....+..|...+..++|.|
T Consensus       156 ~l~~~~~dh~~yvqgvawDp  175 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDP  175 (434)
T ss_pred             eeEeeccccccccceeecch
Confidence            99999999999999999876

>KOG4378|consensus

Probab=99.31  E-value=4.9e-11  Score=65.74  Aligned_cols=80  Identities=19%  Similarity=0.252  Sum_probs=69.7

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-ccccccccccceeEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~~~   81 (85)
                      ++++.+.|..|.+||.+......++.  +..++..++|.++|.+++.|...|.|..||++..+ ++..+..|...|.+++
T Consensus       223 l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  223 LLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             eEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            57899999999999999777766665  56679999999999999999999999999999764 5667788999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |-|
T Consensus       301 fq~  303 (673)
T KOG4378|consen  301 FQP  303 (673)
T ss_pred             eee
Confidence            975

>KOG0640|consensus

Probab=99.30  E-value=7.5e-12  Score=65.55  Aligned_cols=72  Identities=35%  Similarity=0.624  Sum_probs=63.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCC-CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      |+++++++.||.|++||--+..++..+...|. ..|.+..|..+++++++.+.|..+++|.+.+++.+..+-+
T Consensus       273 ~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  273 GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            56789999999999999999999888877654 5688899999999999999999999999999887776653

>KOG0307|consensus

Probab=99.30  E-value=3.5e-12  Score=74.61  Aligned_cols=85  Identities=20%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCcccccccccccc--c
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETGEVDKEYSGHQK--A   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~   76 (85)
                      +++|++|+.+|.|.+||+.+.+....... .....|.+++|+.. .+.+++++.++...|||++..+++..+..+..  .
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~  208 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH  208 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence            36899999999999999998776666532 24567999999985 56688999999999999999888877775544  4


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      +..++|+|.
T Consensus       209 ~S~l~WhP~  217 (1049)
T KOG0307|consen  209 CSVLAWHPD  217 (1049)
T ss_pred             eeeeeeCCC
Confidence            678899884

>KOG0771|consensus

Probab=99.29  E-value=9.2e-12  Score=66.53  Aligned_cols=66  Identities=32%  Similarity=0.444  Sum_probs=57.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK   68 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   68 (85)
                      |..+++++.||.+++|++++.+....... +...|.++.|+|||+.+++.+.| ..++|+..++.++.
T Consensus       156 gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a  221 (398)
T KOG0771|consen  156 GSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA  221 (398)
T ss_pred             CCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence            46899999999999999988877766665 67789999999999999999999 99999999885443

>KOG1538|consensus

Probab=99.29  E-value=3.6e-11  Score=68.43  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=62.0

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      +..+.+||...|.....+++ |...+.+++|+.+|..+++|+.|+.+.+|..+-.. +..+ .|.+.|.||.|+|
T Consensus        32 g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP  103 (1081)
T KOG1538|consen   32 GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNP  103 (1081)
T ss_pred             CCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCc
Confidence            35699999999999999988 99999999999999999999999999999875322 2233 3899999999998

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.28  E-value=1.9e-10  Score=57.43  Aligned_cols=75  Identities=13%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCccccccccccccceeEEE
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS---DGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.|..+..+.+||++ ++.+..+.   ...++.+.|+|+|+++++++.   .|.+.+||+++.+.+.... | ..+..++
T Consensus        77 i~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~  150 (194)
T PF08662_consen   77 IYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVE  150 (194)
T ss_pred             EEccCCcccEEEcCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEE
Confidence            345567789999997 55555554   345789999999999998764   4679999999888877765 3 3478899


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       151 WsPd  154 (194)
T PF08662_consen  151 WSPD  154 (194)
T ss_pred             EcCC
Confidence            9984

>KOG0288|consensus

Probab=99.27  E-value=2.3e-12  Score=69.00  Aligned_cols=81  Identities=28%  Similarity=0.472  Sum_probs=70.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      ..|++++.|..|++|++...+  ....+.+ ..+.++++.+.+++.++++.+.|+.+++|++.+.+...++.+|.+.|.+
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~  266 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTA  266 (459)
T ss_pred             chhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceee
Confidence            468899999999999998665  3444444 5677999999999999999999999999999999999999999999998


Q ss_pred             EEEe
Q psy7058          80 LAFC   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +.|.
T Consensus       267 ak~~  270 (459)
T KOG0288|consen  267 AKFK  270 (459)
T ss_pred             ehhh
Confidence            8764

>KOG0642|consensus

Probab=99.27  E-value=7e-11  Score=65.40  Aligned_cols=82  Identities=22%  Similarity=0.366  Sum_probs=66.9

Q ss_pred             ceeEEeeCCCcEEEeeCCC--------ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc---------
Q psy7058           2 GLLATTSADQTARIWNTED--------FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG---------   64 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------   64 (85)
                      ..|++++.|+.|++|++..        -+++.++.+ |.++|.|+++...+..+++|+.||+|+.|++...         
T Consensus       307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp  385 (577)
T KOG0642|consen  307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP  385 (577)
T ss_pred             CeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc
Confidence            3589999999999999932        245667777 9999999999999999999999999999976522         


Q ss_pred             -cccccccccccceeEEEEeC
Q psy7058          65 -EVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        65 -~~~~~~~~~~~~v~~~~~~~   84 (85)
                       .....+.+|.+.++.+++++
T Consensus       386 ~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  386 SVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             chhccceeccccceeeeeecc
Confidence             12346778999999888875

>KOG1063|consensus

Probab=99.26  E-value=5e-11  Score=67.40  Aligned_cols=84  Identities=24%  Similarity=0.351  Sum_probs=68.6

Q ss_pred             CceeEEeeCCC-----cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc----cccccc
Q psy7058           1 MGLLATTSADQ-----TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE----VDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~   71 (85)
                      |+++++++...     .|++|++.+......+.. |.-.|+.+.|+||++++++.+.|+++.+|......    .....+
T Consensus       537 gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k  615 (764)
T KOG1063|consen  537 GNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK  615 (764)
T ss_pred             CCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccc
Confidence            45677776554     388999999888887777 88899999999999999999999999999875442    222366


Q ss_pred             ccccceeEEEEeCC
Q psy7058          72 GHQKAITSLAFCDF   85 (85)
Q Consensus        72 ~~~~~v~~~~~~~~   85 (85)
                      .|...|.++.|+|.
T Consensus       616 ~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  616 AHTRIIWDCSWSPD  629 (764)
T ss_pred             ccceEEEEcccCcc
Confidence            89999999999984

>KOG1272|consensus

Probab=99.22  E-value=2.4e-11  Score=66.19  Aligned_cols=67  Identities=12%  Similarity=0.238  Sum_probs=59.2

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +-+|...|++.+|.....+++..+.. |.+++.++++.++|.+.+|.+.|..++|||++.-..+.++.
T Consensus       266 ih~GhsnGtVSlWSP~skePLvKiLc-H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  266 IHLGHSNGTVSLWSPNSKEPLVKILC-HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             EEEcCCCceEEecCCCCcchHHHHHh-cCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            45788899999999998888888877 88999999999999999999999999999999776555544

>KOG0322|consensus

Probab=99.22  E-value=2.9e-11  Score=62.04  Aligned_cols=60  Identities=25%  Similarity=0.356  Sum_probs=55.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      ++.+|+++-|+.+++|+.++..+...+.. |...+++++|+|+...++.++.|..|.+|++
T Consensus       263 ~KIlATAGWD~RiRVyswrtl~pLAVLky-Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  263 GKILATAGWDHRIRVYSWRTLNPLAVLKY-HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CcEEeecccCCcEEEEEeccCCchhhhhh-hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            35689999999999999999999988887 8888999999999999999999999999986

>KOG1274|consensus

Probab=99.22  E-value=3.3e-10  Score=65.76  Aligned_cols=81  Identities=21%  Similarity=0.353  Sum_probs=65.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCC-CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |..++....|+.|++|+..+++....+...+. ..+..+.|+|.|.++++++.++.|.+||+.+...    ......|.+
T Consensus       200 ~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~  275 (933)
T KOG1274|consen  200 GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCC  275 (933)
T ss_pred             CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEE
Confidence            34577778899999999999999988877533 3489999999999999999999999999987332    223467778


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|.|+
T Consensus       276 ~aw~p~  281 (933)
T KOG1274|consen  276 EAWKPN  281 (933)
T ss_pred             EecCCC
Confidence            887663

>KOG1446|consensus

Probab=99.22  E-value=6.4e-10  Score=57.99  Aligned_cols=83  Identities=24%  Similarity=0.327  Sum_probs=70.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC--CCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS--DGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |..+++++.|..+++||..+++....+.. +.-.+..++|......+..++.  |..|+..++.+.+.++.|.+|...|+
T Consensus        26 G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~  104 (311)
T KOG1446|consen   26 GLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN  104 (311)
T ss_pred             CCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence            57889999999999999999999988876 3334777888776666665554  78999999999999999999999999


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      .++.+|
T Consensus       105 sL~~sP  110 (311)
T KOG1446|consen  105 SLSVSP  110 (311)
T ss_pred             EEEecC
Confidence            999887

>KOG1274|consensus

Probab=99.21  E-value=4.1e-10  Score=65.39  Aligned_cols=84  Identities=24%  Similarity=0.396  Sum_probs=70.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc--------
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG--------   72 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--------   72 (85)
                      |++++.|+.|-.|++-+..+......+.+ +..++.++.++|.+.++++.+-||.+++|++.++.....+..        
T Consensus       108 g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~  186 (933)
T KOG1274|consen  108 GKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI  186 (933)
T ss_pred             CcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence            57899999999999999988887777777 889999999999999999999999999999998876555432        


Q ss_pred             cccceeEEEEeCC
Q psy7058          73 HQKAITSLAFCDF   85 (85)
Q Consensus        73 ~~~~v~~~~~~~~   85 (85)
                      ....+..++|+|.
T Consensus       187 ~s~i~~~~aW~Pk  199 (933)
T KOG1274|consen  187 LSRICTRLAWHPK  199 (933)
T ss_pred             ccceeeeeeecCC
Confidence            1345567888873

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.20  E-value=9.9e-10  Score=57.21  Aligned_cols=81  Identities=19%  Similarity=0.234  Sum_probs=60.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +..+++++.|+.+++||..+++....+.. +. .+..+.|+|++..+ +++..++.+++||..+++....+..+.. +..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEEC-CC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence            45788999999999999998887777664 32 35679999999876 5667889999999988876655553322 345


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.|+|
T Consensus        78 ~~~~~   82 (300)
T TIGR03866        78 FALHP   82 (300)
T ss_pred             EEECC
Confidence            56654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378|consensus

Probab=99.18  E-value=1.7e-10  Score=63.70  Aligned_cols=81  Identities=15%  Similarity=0.334  Sum_probs=65.7

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +|.+++.+|.+.+||+....+.......|..+...++|+| +..++++.+.|+.|.+||+...+....+. -..+...++
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstva  257 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVA  257 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceee
Confidence            4678999999999999988888877777889999999999 56678899999999999998665544443 345667777


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+|
T Consensus       258 f~~  260 (673)
T KOG4378|consen  258 FSE  260 (673)
T ss_pred             ecC
Confidence            765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.18  E-value=1.3e-09  Score=56.82  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEE-cCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA-SSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      ++.+.++.+.+||..+++.......  ...+.++.|+|++..++++ ..++.|.+||+.+++.+..++.. ...+.++++
T Consensus       223 ~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~  299 (300)
T TIGR03866       223 VALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVR  299 (300)
T ss_pred             EEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeC
Confidence            3344566799999988877655432  3458899999999998876 46899999999999988888754 555888887


Q ss_pred             C
Q psy7058          84 D   84 (85)
Q Consensus        84 ~   84 (85)
                      |
T Consensus       300 ~  300 (300)
T TIGR03866       300 P  300 (300)
T ss_pred             C
Confidence            5

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063|consensus

Probab=99.17  E-value=3.1e-10  Score=64.38  Aligned_cols=84  Identities=21%  Similarity=0.309  Sum_probs=64.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceee-ee--eeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc--ccccc--cccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLV-RE--LGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG--EVDKE--YSGH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~--~~~~   73 (85)
                      |++|++.++|+++.+|........ ..  ....|...|++..|+|++.+++|++.|+.+.+|.....  +.+..  ...+
T Consensus       584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~  663 (764)
T KOG1063|consen  584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF  663 (764)
T ss_pred             CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence            578999999999999987543221 11  12237888999999999999999999999999998877  43333  2346


Q ss_pred             ccceeEEEEeC
Q psy7058          74 QKAITSLAFCD   84 (85)
Q Consensus        74 ~~~v~~~~~~~   84 (85)
                      ..+|+.++|.|
T Consensus       664 ~~aVTAv~~~~  674 (764)
T KOG1063|consen  664 SLAVTAVAYLP  674 (764)
T ss_pred             CCceeeEEeec
Confidence            78888888865

>KOG1036|consensus

Probab=99.17  E-value=1.1e-09  Score=57.09  Aligned_cols=78  Identities=12%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      .+++|+.|+.|+++|+.+++.... . .|..++.++...+....+++|+.|++|++||.+.......+. ....|.++..
T Consensus        67 ~~~~G~~dg~vr~~Dln~~~~~~i-g-th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   67 TIVTGGLDGQVRRYDLNTGNEDQI-G-THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV  143 (323)
T ss_pred             eEEEeccCceEEEEEecCCcceee-c-cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence            467888888888888877665443 2 277889999999988899999999999999999765555555 3347777654


Q ss_pred             e
Q psy7058          83 C   83 (85)
Q Consensus        83 ~   83 (85)
                      +
T Consensus       144 ~  144 (323)
T KOG1036|consen  144 S  144 (323)
T ss_pred             c
Confidence            3

>KOG0290|consensus

Probab=99.16  E-value=6.1e-10  Score=58.06  Aligned_cols=53  Identities=19%  Similarity=0.276  Sum_probs=42.3

Q ss_pred             CCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCcc------ccccccccccceeEEEEeC
Q psy7058          31 NQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGE------VDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        31 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~v~~~~~~~   84 (85)
                      |...|+.++|.| ..+.++++++|....+||+.+.-      ++..+. .++.|+.+.|++
T Consensus       286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS  345 (364)
T ss_pred             CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence            667799999999 56789999999999999997542      333444 567899999985

>KOG1524|consensus

Probab=99.16  E-value=6.8e-10  Score=61.95  Aligned_cols=54  Identities=20%  Similarity=0.292  Sum_probs=47.4

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      |.+-|.++.|++....+++|++|...++||.. |..+..-..|+.+|++++|+|.
T Consensus       185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             cCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence            56678899999999999999999999999985 6667777779999999999984

>KOG0300|consensus

Probab=99.16  E-value=6.9e-10  Score=58.68  Aligned_cols=81  Identities=14%  Similarity=0.309  Sum_probs=64.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCcee-eeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc----ccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE----VDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~   76 (85)
                      ..+++|+.|.++++||++++.. +..+.  ...+++.+.++..+..++...++..|++||+...+    +...-++|..-
T Consensus       369 d~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM  446 (481)
T KOG0300|consen  369 DRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM  446 (481)
T ss_pred             CceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence            4688999999999999998754 45555  35669999999888899999999999999996443    22245588899


Q ss_pred             eeEEEEeC
Q psy7058          77 ITSLAFCD   84 (85)
Q Consensus        77 v~~~~~~~   84 (85)
                      |.|++|..
T Consensus       447 V~c~AW~e  454 (481)
T KOG0300|consen  447 VTCCAWLE  454 (481)
T ss_pred             eeeeeccc
Confidence            99999864

>KOG1009|consensus

Probab=99.16  E-value=1.5e-10  Score=62.12  Aligned_cols=83  Identities=29%  Similarity=0.380  Sum_probs=63.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceee---------eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC--------C-
Q psy7058           2 GLLATTSADQTARIWNTEDFSLV---------RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE--------T-   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~-   63 (85)
                      +++++|+.|..|++|.+.....-         ..+. .|...++.+.|+|+|..+++|++++.+.+|...        . 
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e  105 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE  105 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence            37899999999999988643221         1222 377889999999999999999999999999765        1 


Q ss_pred             -------ccccccccccccceeEEEEeCC
Q psy7058          64 -------GEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        64 -------~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                             -.....+.+|...|+.++|+|.
T Consensus       106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d  134 (434)
T KOG1009|consen  106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPD  134 (434)
T ss_pred             hhhCccceEEEEEecccccchhhhhccCC
Confidence                   0122345578889999999874

>KOG0301|consensus

Probab=99.15  E-value=1.3e-09  Score=61.91  Aligned_cols=75  Identities=19%  Similarity=0.384  Sum_probs=60.1

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++++++|+.|+.|++ +++.+.+..+ |...+.++...++...++++++|++++||+..  .+.+.+......|+++.
T Consensus       192 ~flScsNDg~Ir~w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~  266 (745)
T KOG0301|consen  192 HFLSCSNDGSIRLWDL-DGEVLLEMHG-HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAK  266 (745)
T ss_pred             CeEeecCCceEEEEec-cCceeeeeec-cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEE
Confidence            5789999999999998 6888888887 88889999988888899999999999999986  44444443333555544

>KOG1539|consensus

Probab=99.14  E-value=1.3e-09  Score=63.02  Aligned_cols=81  Identities=12%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.++.|+..|.+.+|++++++.+++++. ....|+++.-+|-=..++.|..+|.|.+++++..+.+.+|+...+.|++++
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS  251 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS  251 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence            4678999999999999999999999998 668899999999889999999999999999999999999995569999999


Q ss_pred             Ee
Q psy7058          82 FC   83 (85)
Q Consensus        82 ~~   83 (85)
                      |.
T Consensus       252 Fr  253 (910)
T KOG1539|consen  252 FR  253 (910)
T ss_pred             ec
Confidence            85

>KOG2048|consensus

Probab=99.14  E-value=1.2e-09  Score=61.85  Aligned_cols=82  Identities=23%  Similarity=0.391  Sum_probs=65.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec-------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT-------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      ..++.|+.|+.|++||+.++........       ....-++++.+-.+ ..+++|++.|.|.+||...+..++.+..|.
T Consensus       167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~  245 (691)
T KOG2048|consen  167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD  245 (691)
T ss_pred             cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh
Confidence            3589999999999999998877662221       12345677776644 468899999999999999999999999999


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..|.+++.++
T Consensus       246 adVl~Lav~~  255 (691)
T KOG2048|consen  246 ADVLALAVAD  255 (691)
T ss_pred             cceeEEEEcC
Confidence            9999988665

>KOG2394|consensus

Probab=99.12  E-value=8.6e-10  Score=61.31  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=48.3

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      ..|+..+|+|||+++++.+.|+.++|||..+.+.+..++.--+...|++|+|.
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence            46888999999999999999999999999998888888877889999999984

>KOG2919|consensus

Probab=99.11  E-value=3.9e-10  Score=59.49  Aligned_cols=85  Identities=13%  Similarity=0.197  Sum_probs=62.8

Q ss_pred             CceeEEeeC-CCcEEEeeCCCc-eeeeeeeccC--CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC-cccccccccccc
Q psy7058           1 MGLLATTSA-DQTARIWNTEDF-SLVRELGTAN--QRWVWDAAFTLDSKFLLTASSDGVARLWNIET-GEVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~-~~~i~~~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~   75 (85)
                      |+.|.+|++ +..|..||++.- .++..+...-  ...-.-....|++.++++|+.+|.|++||++. +.....+..+.+
T Consensus       262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd  341 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD  341 (406)
T ss_pred             cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence            456777764 678999999853 4555555411  12233345577899999999999999999987 676777777888


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .++.++++|.
T Consensus       342 ~vNgvslnP~  351 (406)
T KOG2919|consen  342 TVNGVSLNPI  351 (406)
T ss_pred             cccceecCcc
Confidence            9999998874

>KOG1036|consensus

Probab=99.11  E-value=2.3e-09  Score=55.98  Aligned_cols=79  Identities=23%  Similarity=0.346  Sum_probs=63.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.|++++-|+.+++||+........+.  +..++.+.+|.+ ...+++|+.|+.|+.+|+..++.. .+..|..+|+++.
T Consensus        26 ~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~  101 (323)
T KOG1036|consen   26 SDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIE  101 (323)
T ss_pred             CcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEE
Confidence            567888899999999998775555554  677899999985 567889999999999999877654 4455899999998


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      +++
T Consensus       102 ~~~  104 (323)
T KOG1036|consen  102 YSY  104 (323)
T ss_pred             eec
Confidence            874

>KOG0268|consensus

Probab=99.11  E-value=2.2e-10  Score=61.03  Aligned_cols=80  Identities=13%  Similarity=0.256  Sum_probs=64.0

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-ccccceeEEEE
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSLAF   82 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~   82 (85)
                      +.+++.|..++++|++..+.+......|...+.+++|+|.|+-+++|+-|.+|+||..+.+...-.+- ..-+.|.+++|
T Consensus       244 F~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~  323 (433)
T KOG0268|consen  244 FVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY  323 (433)
T ss_pred             eeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEE
Confidence            57889999999999998766555555588889999999999999999999999999998776443332 12356777777


Q ss_pred             e
Q psy7058          83 C   83 (85)
Q Consensus        83 ~   83 (85)
                      |
T Consensus       324 S  324 (433)
T KOG0268|consen  324 S  324 (433)
T ss_pred             e
Confidence            6

>KOG2048|consensus

Probab=99.10  E-value=3.9e-09  Score=59.86  Aligned_cols=83  Identities=16%  Similarity=0.313  Sum_probs=71.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc--cccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD--KEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~v~   78 (85)
                      |.+|.+.+-+|.|.-||+.+++....+.. ..+.|++++.+|.+..++.+++||.+.++++..++..  ..+.-.++.+.
T Consensus        80 ~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   80 GGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             CCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            46789999999999999999999998887 6778999999999999999999999988888776543  33555678999


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      +++|+|
T Consensus       159 slsw~~  164 (691)
T KOG2048|consen  159 SLSWNP  164 (691)
T ss_pred             EEEecC
Confidence            999987

>KOG0650|consensus

Probab=99.10  E-value=7.1e-10  Score=62.34  Aligned_cols=55  Identities=24%  Similarity=0.450  Sum_probs=50.8

Q ss_pred             cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          30 ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      +|.+.+.++...|.|.++++|+.||++++|.+.++.++.++. ..+.|.+++|+|.
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~  452 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPL  452 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCC
Confidence            488899999999999999999999999999999999999887 5679999999984

>KOG2445|consensus

Probab=99.09  E-value=6.5e-09  Score=54.63  Aligned_cols=83  Identities=22%  Similarity=0.262  Sum_probs=59.7

Q ss_pred             CceeEEeeCCCcEEEeeCCC---------ceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCccccc-
Q psy7058           1 MGLLATTSADQTARIWNTED---------FSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGEVDK-   68 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~-   68 (85)
                      |+.+|+++.|+++.+|.-..         ......+.. ....+.++.|.|  -|-.+++++.||.+|||+..+...+. 
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~  151 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ  151 (361)
T ss_pred             cceEEEEecCCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence            67899999999999997521         122333333 556799999999  47789999999999999986543222 


Q ss_pred             -----ccc-------ccccceeEEEEeC
Q psy7058          69 -----EYS-------GHQKAITSLAFCD   84 (85)
Q Consensus        69 -----~~~-------~~~~~v~~~~~~~   84 (85)
                           .++       .+..+..|+.|+|
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~  179 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNP  179 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeecc
Confidence                 122       3566778888876

>KOG1310|consensus

Probab=99.08  E-value=1.1e-09  Score=61.31  Aligned_cols=63  Identities=19%  Similarity=0.501  Sum_probs=57.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      |.+|++|+.|..+.|||...-+++..+..+|...|.++.|.|  ....+++|..|..|++||+..
T Consensus        62 G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   62 GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            678999999999999999988999999888999999999999  456788999999999999974

>KOG4547|consensus

Probab=99.06  E-value=4.1e-09  Score=58.75  Aligned_cols=77  Identities=26%  Similarity=0.346  Sum_probs=68.3

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      +.+++.|..+.+|+.......+.... .+..+.+++.+||+..+++++  +.|.+||+.+.+.+.+|.+|..+|++++|.
T Consensus       117 iyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~  193 (541)
T KOG4547|consen  117 IYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFT  193 (541)
T ss_pred             eEecCCceeEEEEecccceeeeeecc-CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence            67889999999999998888888776 556689999999999988765  689999999999999999999999999884

>KOG2919|consensus

Probab=99.06  E-value=1.6e-09  Score=57.29  Aligned_cols=83  Identities=22%  Similarity=0.332  Sum_probs=62.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc-CC---CcEEEEEecCCCCEEEEEcCCCeEEEEEc-CCccccccc------
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA-NQ---RWVWDAAFTLDSKFLLTASSDGVARLWNI-ETGEVDKEY------   70 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~------   70 (85)
                      +++++.+++.-|++||..+++....+..- +.   ....+++|+|||..++.| .+.+|++||+ +.++-...+      
T Consensus       124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~  202 (406)
T KOG2919|consen  124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG  202 (406)
T ss_pred             ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence            46788999999999999999988777651 11   235789999999998875 6779999998 555422211      


Q ss_pred             -cccccceeEEEEeCC
Q psy7058          71 -SGHQKAITSLAFCDF   85 (85)
Q Consensus        71 -~~~~~~v~~~~~~~~   85 (85)
                       .+..+.+.+++|+|.
T Consensus       203 k~gq~giisc~a~sP~  218 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPM  218 (406)
T ss_pred             cccccceeeeeeccCC
Confidence             134677888999883

>KOG0974|consensus

Probab=99.04  E-value=5.2e-09  Score=61.52  Aligned_cols=82  Identities=21%  Similarity=0.323  Sum_probs=68.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc-cccccccceeEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK-EYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~v~~~~   81 (85)
                      ++++|+.-+.|.+|+....+....+.+ |.+.+.++.++-+|.++++.++|..+++|++.+.+... ..-+|...+..+.
T Consensus       147 ~i~~gsv~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             EEEeccccccEEEEeccccCCcceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence            467888889999999884444444555 88899999999999999999999999999999888776 5667999999988


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |.|.
T Consensus       226 ~~~n  229 (967)
T KOG0974|consen  226 FLPN  229 (967)
T ss_pred             eccc
Confidence            8764

>KOG0301|consensus

Probab=99.04  E-value=2e-09  Score=61.17  Aligned_cols=75  Identities=33%  Similarity=0.542  Sum_probs=60.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      .+++|+.|.+|++|.-  ++....+.+ |...+..+++-++. .+++++.||.|+.|++ ++.++..+.+|..-+++++.
T Consensus       153 ~~vTgsaDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~  227 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM  227 (745)
T ss_pred             cEEeccCcceeeeccC--Cchhhhhcc-chhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe
Confidence            5788999999999984  667777777 88888888876554 5667889999999999 78888888889998888874

>KOG0280|consensus

Probab=99.02  E-value=1e-08  Score=53.57  Aligned_cols=82  Identities=12%  Similarity=0.117  Sum_probs=60.2

Q ss_pred             ceeEEeeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCC-cccccccccccccee
Q psy7058           2 GLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIET-GEVDKEYSGHQKAIT   78 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~v~   78 (85)
                      +.+.+|+.|+.+.-||++- .+.+..-...|...+.++.-+| .+.++++|+-|-.|++||.++ ++++..-+ ..+.|.
T Consensus       179 nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVW  257 (339)
T KOG0280|consen  179 NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVW  257 (339)
T ss_pred             ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceE
Confidence            5688999999999999993 3333332222555688887776 678999999999999999995 45554443 447777


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      -+.++|
T Consensus       258 Ri~~~p  263 (339)
T KOG0280|consen  258 RIKHHP  263 (339)
T ss_pred             EEEecc
Confidence            777766

>KOG4328|consensus

Probab=99.01  E-value=1.9e-09  Score=58.82  Aligned_cols=61  Identities=33%  Similarity=0.406  Sum_probs=48.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeee--e-eccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRE--L-GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      .++++++.|++.++||++.......  + ...|...|++..|+|++-.+++.+.|..|++||..
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            3689999999999999986543332  1 12377889999999976669999999999999983

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.00  E-value=1.6e-08  Score=50.65  Aligned_cols=64  Identities=16%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC------CCeEEEEEcCCccccc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS------DGVARLWNIETGEVDK   68 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~   68 (85)
                      |++++.++.+   |.+.+||+++.+.+....  +. .+..+.|+|+|++++++..      |..++||+.. |+.+.
T Consensus       112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence            5778887643   569999999888776654  33 3789999999999998764      6778999984 55443

>KOG1524|consensus

Probab=98.99  E-value=1.5e-09  Score=60.67  Aligned_cols=81  Identities=21%  Similarity=0.304  Sum_probs=66.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..++.+++||.+.+.+ +.+.....+.. |...+.+-+|+|+|.-+++.++||.|++|.- +|....++.....+|+|++
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISA-HAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhh-hhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEE
Confidence            3577888899888866 34555555555 8888999999999999999999999999984 5777777777889999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |.|.
T Consensus       153 W~p~  156 (737)
T KOG1524|consen  153 WAPN  156 (737)
T ss_pred             ECCC
Confidence            9874

>KOG4328|consensus

Probab=98.97  E-value=3.1e-09  Score=58.05  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             eEEeeCCCcEEEeeCCCceeee-eeeccCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCccc----cccccccccce
Q psy7058           4 LATTSADQTARIWNTEDFSLVR-ELGTANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETGEV----DKEYSGHQKAI   77 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~v   77 (85)
                      ++.+..-|...+||.++..... .+.. |...|..++++|. ..++++++.|++.+|||+++...    +...-.|...|
T Consensus       294 vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV  372 (498)
T KOG4328|consen  294 VLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV  372 (498)
T ss_pred             EEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence            5566666788999999876633 3333 5668999999995 56689999999999999986532    23334599999


Q ss_pred             eEEEEeCC
Q psy7058          78 TSLAFCDF   85 (85)
Q Consensus        78 ~~~~~~~~   85 (85)
                      ++..|||.
T Consensus       373 ~sAyFSPs  380 (498)
T KOG4328|consen  373 NSAYFSPS  380 (498)
T ss_pred             eeeEEcCC
Confidence            99999984

>KOG0307|consensus

Probab=98.95  E-value=2.9e-09  Score=62.99  Aligned_cols=82  Identities=22%  Similarity=0.341  Sum_probs=66.0

Q ss_pred             eeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           3 LLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         3 ~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      .+++++.|   ..|.+||++......+....|...|.++.|.+.+ .++++++.|+.+.+|+.++++.+..+....+=++
T Consensus       221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~f  300 (1049)
T KOG0307|consen  221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCF  300 (1049)
T ss_pred             eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCccee
Confidence            34555544   3588999987655544444488889999999954 8899999999999999999999999988788888


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      .+.|.|
T Consensus       301 dv~w~p  306 (1049)
T KOG0307|consen  301 DVQWCP  306 (1049)
T ss_pred             eeeecC
Confidence            898876

>KOG1188|consensus

Probab=98.95  E-value=6.9e-09  Score=55.03  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=54.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      ..++++-..+.+++||..+++....+.. ++..++.++|..  ....+.+++.||+|++||++.....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            3578888999999999999999988887 777788888877  4567889999999999999876443

>KOG2110|consensus

Probab=98.95  E-value=2.4e-08  Score=53.45  Aligned_cols=63  Identities=24%  Similarity=0.362  Sum_probs=54.9

Q ss_pred             CceeEEeeCCCc-EEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           1 MGLLATTSADQT-ARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         1 g~~l~~~~~~~~-i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      |.+||+++..|+ |+|+++.+++.+.+++.+ ....|.+++|++++++++..+..++|.+|.+..
T Consensus       185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            678999998886 779999999999998864 345688999999999999999999999998864

>KOG2106|consensus

Probab=98.94  E-value=6.1e-08  Score=54.04  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=41.6

Q ss_pred             CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-ccccc-cccccceeEEEEeC
Q psy7058          32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEY-SGHQKAITSLAFCD   84 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~-~~~~~~v~~~~~~~   84 (85)
                      +.+++.++++|+|.+++.++.|+.|++|.+.... ..... ..+..+|..+.|++
T Consensus       447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~  501 (626)
T KOG2106|consen  447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS  501 (626)
T ss_pred             CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence            5679999999999999999999999999986543 22222 23448899999876

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.94  E-value=5.4e-08  Score=52.00  Aligned_cols=77  Identities=35%  Similarity=0.604  Sum_probs=65.0

Q ss_pred             eeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058           7 TSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus         7 ~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      +..++.+.+|+... ......+.. +...+..+.++|++..++.++. ++.+++|++.....+..+..|...+.+++|+|
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  208 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP  208 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC
Confidence            34488999999987 566666665 7777999999999998888875 99999999998888888888999999999875

>KOG3881|consensus

Probab=98.94  E-value=1.3e-08  Score=54.70  Aligned_cols=67  Identities=10%  Similarity=0.008  Sum_probs=58.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      |++++++...+.+..||.+.++.......+-.+.+.++..+|.++++++++.|+.+||+|+++.+.+
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            5788999999999999999999888744436677999999999999999999999999999885543

>KOG0321|consensus

Probab=98.93  E-value=5.1e-09  Score=59.29  Aligned_cols=82  Identities=21%  Similarity=0.367  Sum_probs=67.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceee-----eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc--cccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLV-----RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE--YSGHQK   75 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~   75 (85)
                      .|+.+..+|.|.++|.....-.     ......|...|..+.|.|....|++.+.|.++++||++..+....  +.+|..
T Consensus        66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~  145 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG  145 (720)
T ss_pred             eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence            5788999999999998754332     112224778899999999777889999999999999999888776  889999


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      .|.+++|.|
T Consensus       146 SvkS~cf~~  154 (720)
T KOG0321|consen  146 SVKSECFMP  154 (720)
T ss_pred             ccchhhhcc
Confidence            999998876

>KOG3881|consensus

Probab=98.91  E-value=2.5e-08  Score=53.71  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=69.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCcee-eeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc-ccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE-YSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~v~~   79 (85)
                      ..++++..-+.+++||.+.+.. +.++.. ...++.++...|++++++++...+.+..||++.++.+.. +.+..+.|++
T Consensus       217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs  295 (412)
T KOG3881|consen  217 YKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS  295 (412)
T ss_pred             ceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence            4689999999999999997644 445544 567799999999999999999999999999999998876 7788888888


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +..+|
T Consensus       296 ih~hp  300 (412)
T KOG3881|consen  296 IHCHP  300 (412)
T ss_pred             EEEcC
Confidence            87766

>KOG0649|consensus

Probab=98.91  E-value=2.7e-08  Score=51.14  Aligned_cols=67  Identities=18%  Similarity=0.457  Sum_probs=47.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccC---------CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTAN---------QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ..+++|+.||++++||.++++.+..+....         ...|-++  .-+..+++.| ....+.+|.++..++...+.
T Consensus       169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCG-gGp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCG-GGPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEec-CCCceeEEeccCCCceEEEe
Confidence            458899999999999999999887765411         1223333  3356677665 44578899999887665554

>KOG0650|consensus

Probab=98.90  E-value=5.4e-08  Score=55.17  Aligned_cols=28  Identities=36%  Similarity=0.419  Sum_probs=24.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELG   28 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~   28 (85)
                      |.+|++|+.||++++|.+.++.++..+.
T Consensus       412 G~wlasGsdDGtvriWEi~TgRcvr~~~  439 (733)
T KOG0650|consen  412 GEWLASGSDDGTVRIWEIATGRCVRTVQ  439 (733)
T ss_pred             cceeeecCCCCcEEEEEeecceEEEEEe
Confidence            6789999999999999998887766654

>KOG1273|consensus

Probab=98.89  E-value=7e-09  Score=54.81  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             EEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          35 VWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      ..++.|++.|.+++.|+.+|.+-|||+.+-...+.+.+|..+|.+++||+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d   76 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRD   76 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCC
Confidence            789999999999999999999999999998888899999999999999873

>KOG2106|consensus

Probab=98.89  E-value=3.7e-08  Score=54.84  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=61.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +++++++.|+.+++|+  ..++.....  ...+..++.|+|.| .++.|...|...+.|..+... .++...+++++.++
T Consensus       381 ~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~ls~v~  454 (626)
T KOG2106|consen  381 NQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNEQLSVVR  454 (626)
T ss_pred             hheeeccCcceEEEcc--CCceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCCceEEEE
Confidence            4689999999999999  444444444  34568999999999 999999999999999988443 44444588999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       455 ysp~  458 (626)
T KOG2106|consen  455 YSPD  458 (626)
T ss_pred             EcCC
Confidence            9984

>KOG0321|consensus

Probab=98.87  E-value=6e-09  Score=59.00  Aligned_cols=62  Identities=26%  Similarity=0.353  Sum_probs=52.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeee--eeccCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRE--LGTANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      ..|++++-|.++++||+........  ..+ |...+.+++|.+. ...|++|+.|+.+.|||++..
T Consensus       113 ~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  113 SLLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             eeEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            3578999999999999998877665  444 8888999999995 566889999999999999743

>KOG2139|consensus

Probab=98.86  E-value=7.3e-08  Score=51.87  Aligned_cols=82  Identities=16%  Similarity=0.247  Sum_probs=56.0

Q ss_pred             ceeEEee-CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTS-ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ..+++++ .|..|.+||..++........ ..+.+.-+.|+||+.+++.+.-|+..++|+..+...-.......+.|...
T Consensus       208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta  286 (445)
T KOG2139|consen  208 TILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA  286 (445)
T ss_pred             CEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence            4456665 456899999998877665533 34558889999999999999999999999665432221121123356666


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      .|+|
T Consensus       287 cWsp  290 (445)
T KOG2139|consen  287 CWSP  290 (445)
T ss_pred             eecC
Confidence            6655

>KOG4227|consensus

Probab=98.85  E-value=3.1e-08  Score=53.93  Aligned_cols=84  Identities=17%  Similarity=0.268  Sum_probs=65.2

Q ss_pred             CceeEEeeCCCcEEEeeCC------CceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc-
Q psy7058           1 MGLLATTSADQTARIWNTE------DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH-   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-   73 (85)
                      +++|++|+.|...++|++.      +.+++......|...|.++.|.....++++|..++.+...|+.+.+.+..+... 
T Consensus        68 ~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~  147 (609)
T KOG4227|consen   68 DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENN  147 (609)
T ss_pred             CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccC
Confidence            5789999999999999984      335555444446678999999999999999999999999999988777666522 


Q ss_pred             -ccceeEEEEeC
Q psy7058          74 -QKAITSLAFCD   84 (85)
Q Consensus        74 -~~~v~~~~~~~   84 (85)
                       .+.|+.+..+|
T Consensus       148 ~~~~VY~m~~~P  159 (609)
T KOG4227|consen  148 NRGDVYHMDQHP  159 (609)
T ss_pred             cccceeecccCC
Confidence             23676666554

>KOG2055|consensus

Probab=98.82  E-value=6.8e-08  Score=53.15  Aligned_cols=69  Identities=19%  Similarity=0.332  Sum_probs=61.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +++|+..+..|.|.+....+++.+..++.  .+.+..++|+.+++.++..+.+|.|.+||+++..++..+.
T Consensus       315 ~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  315 SNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             CCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence            46899999999999999999999888875  5669999999999999999999999999999988777665

>KOG1963|consensus

Probab=98.79  E-value=1.6e-07  Score=54.69  Aligned_cols=84  Identities=23%  Similarity=0.287  Sum_probs=62.4

Q ss_pred             CceeEEeeCCCcEEEeeCCC--c-eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccce
Q psy7058           1 MGLLATTSADQTARIWNTED--F-SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      +++++++..||.|.+|.-..  . ....++..=|...++++.|+++|.++++|+..+.+-.|.+.+++ .+-++--..+|
T Consensus       217 ~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I  295 (792)
T KOG1963|consen  217 ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPI  295 (792)
T ss_pred             cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCee
Confidence            46789999999999997543  1 11111111155679999999999999999999999999998877 33344456788


Q ss_pred             eEEEEeCC
Q psy7058          78 TSLAFCDF   85 (85)
Q Consensus        78 ~~~~~~~~   85 (85)
                      ..+.++|.
T Consensus       296 ~~i~vS~d  303 (792)
T KOG1963|consen  296 LHIVVSPD  303 (792)
T ss_pred             EEEEEcCC
Confidence            88888763

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.77  E-value=8.3e-07  Score=48.52  Aligned_cols=69  Identities=19%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |+++.++++|+.+.++|+.+.+.+.++..+  .....+++++||++++.+. .++.+.++|.++.++++.+.
T Consensus        48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   48 GRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            467888889999999999999999988863  3468899999999988765 58899999999888777665

...

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.77  E-value=2.9e-07  Score=51.91  Aligned_cols=58  Identities=12%  Similarity=0.110  Sum_probs=48.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      ++++.|+.||.+.+||...+..... +  ..-..+.++|+|+|..++.++..|.+.+||+.
T Consensus       272 ~kLvlGC~DgSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  272 DKLVLGCEDGSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ceEEEEecCCeEEEEEcCCCeeeee-e--ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            5789999999999999876644332 2  33457899999999999999999999999985

>KOG1272|consensus

Probab=98.77  E-value=1.5e-08  Score=55.75  Aligned_cols=81  Identities=17%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      +|+++++.|.++.-|+.+|+.+..+.. ..+.+..++.+|-.-.+-+|..+|+|.+|......++..+..|.++|.++++
T Consensus       223 LL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv  301 (545)
T KOG1272|consen  223 LLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAV  301 (545)
T ss_pred             eeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEE
Confidence            468888999999999999999998887 5556788888988888889999999999999999999999999999999998


Q ss_pred             eC
Q psy7058          83 CD   84 (85)
Q Consensus        83 ~~   84 (85)
                      .+
T Consensus       302 ~~  303 (545)
T KOG1272|consen  302 DR  303 (545)
T ss_pred             CC
Confidence            76

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.76  E-value=6.2e-07  Score=48.00  Aligned_cols=80  Identities=31%  Similarity=0.539  Sum_probs=60.3

Q ss_pred             eeEEeeC-CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCCccccc-cccccccceeE
Q psy7058           3 LLATTSA-DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIETGEVDK-EYSGHQKAITS   79 (85)
Q Consensus         3 ~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~v~~   79 (85)
                      .+++++. ++.+++|+.........+.. +...+.++.++|++. .+++++.++.+++||...+.... .+..|.... .
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~  246 (466)
T COG2319         169 LLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V  246 (466)
T ss_pred             EEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-e
Confidence            4666665 99999999998777777766 778899999999887 55555899999999988666666 566666553 2


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ..|+|
T Consensus       247 ~~~~~  251 (466)
T COG2319         247 SSFSP  251 (466)
T ss_pred             EeECC
Confidence            24444

>KOG3914|consensus

Probab=98.73  E-value=7.9e-08  Score=51.87  Aligned_cols=69  Identities=20%  Similarity=0.363  Sum_probs=55.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ++++++.+|+.|++-..........+-.+|...|..+++-++. .+++++.|+++++||+.+++.+.++.
T Consensus       164 ~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  164 QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence            6789999999999877776666666655688889999887544 48899999999999999998775543

>KOG2096|consensus

Probab=98.73  E-value=6.3e-08  Score=51.47  Aligned_cols=61  Identities=26%  Similarity=0.334  Sum_probs=50.4

Q ss_pred             CceeEEeeCCCcEEEeeCCC---c-----eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTED---F-----SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |+++++++-...+++|...-   |     ..+.++.+ |...+...+|+++....++.+.||.+++||+.
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            67899999889999998742   2     22345555 88889999999999999999999999999974

>KOG2321|consensus

Probab=98.72  E-value=2.3e-07  Score=52.58  Aligned_cols=82  Identities=23%  Similarity=0.307  Sum_probs=62.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc-----C-----CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA-----N-----QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .+|++|+.++.+-.||.++...+..+...     +     ...++++.|+-+|-.++.|..+|.+.|||++..+++..-.
T Consensus       188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd  267 (703)
T KOG2321|consen  188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD  267 (703)
T ss_pred             ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence            46788888999999999987766665432     1     1248999999889999999999999999999887765443


Q ss_pred             -ccccceeEEEEe
Q psy7058          72 -GHQKAITSLAFC   83 (85)
Q Consensus        72 -~~~~~v~~~~~~   83 (85)
                       ...-+|..+.|.
T Consensus       268 h~~e~pi~~l~~~  280 (703)
T KOG2321|consen  268 HGYELPIKKLDWQ  280 (703)
T ss_pred             cCCccceeeeccc
Confidence             234566666664

>KOG0771|consensus

Probab=98.72  E-value=3.2e-08  Score=53.50  Aligned_cols=50  Identities=26%  Similarity=0.290  Sum_probs=46.6

Q ss_pred             EEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          36 WDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      ..++++.+|..+++++.||++|+|+.++...+.....|...|.++.|+|.
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d  197 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD  197 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC
Confidence            57899999999999999999999999999988888889999999999984

>KOG1523|consensus

Probab=98.71  E-value=1.9e-07  Score=49.49  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=66.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCce---eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc---ccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFS---LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG---EVDKEYSGHQK   75 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~   75 (85)
                      ..++.+.+...+.+|......   ....+.. |...++.++|+|....+++++.|..-++|...++   ++...+..++.
T Consensus        23 t~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNr  101 (361)
T KOG1523|consen   23 TQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINR  101 (361)
T ss_pred             ceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEecc
Confidence            457788888889998877554   4445554 7788999999999999999999999999998543   45556666888


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      ..+++.|+|.
T Consensus       102 AAt~V~WsP~  111 (361)
T KOG1523|consen  102 AATCVKWSPK  111 (361)
T ss_pred             ceeeEeecCc
Confidence            9999999884

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.70  E-value=1.4e-06  Score=47.69  Aligned_cols=78  Identities=15%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      ++-..++.+.+.|..+.+.+.++.... ..-..+.++|||++++..+.|+.+.++|+.+.+.+.+++.. .....+++++
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~   87 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP   87 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence            455667999999999999999888633 33345678999999999899999999999999988877743 3345566554

...

>KOG4714|consensus

Probab=98.68  E-value=2.9e-08  Score=51.35  Aligned_cols=61  Identities=21%  Similarity=0.491  Sum_probs=52.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~   62 (85)
                      +.++.|+.||.+-+||++....+..+...|+.+++-+.|+| ++..+++++.||.+..||..
T Consensus       193 ~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  193 HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            45788999999999999988665555555888999999999 78899999999999999986

>KOG1310|consensus

Probab=98.68  E-value=7.2e-08  Score=54.39  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=49.1

Q ss_pred             cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-ccccceeEEEEeCC
Q psy7058          30 ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSLAFCDF   85 (85)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~   85 (85)
                      +|.+-|+++.|+.+|.++++|++|-.+.|||.-..+.+-.+. +|...|.+++|-|+
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~  104 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY  104 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc
Confidence            378889999999999999999999999999998777665554 78999999999875

>KOG1523|consensus

Probab=98.63  E-value=7.1e-07  Score=47.44  Aligned_cols=83  Identities=16%  Similarity=0.081  Sum_probs=61.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCc---eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc---ccc-cccc
Q psy7058           2 GLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD---KEY-SGHQ   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~-~~~~   74 (85)
                      +.|++++.|..-++|....+   ++...+.. .+....++.|+|.+..+++|+..+.|.+|=....+-=   +.+ +.+.
T Consensus        68 nrIvtcs~drnayVw~~~~~~~WkptlvLlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir  146 (361)
T KOG1523|consen   68 NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLR-INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR  146 (361)
T ss_pred             CceeEccCCCCccccccCCCCeeccceeEEE-eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence            57899999999999998443   33333333 6677899999999999999999999998877644321   111 1346


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..|.++.|+|.
T Consensus       147 Stv~sldWhpn  157 (361)
T KOG1523|consen  147 STVTSLDWHPN  157 (361)
T ss_pred             cceeeeeccCC
Confidence            67888888874

>KOG1517|consensus

Probab=98.62  E-value=9.4e-07  Score=53.35  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCcee---eeeeeccCCCc--EEEEEecCCCCE-EEEEcCCCeEEEEEcCCc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSL---VRELGTANQRW--VWDAAFTLDSKF-LLTASSDGVARLWNIETG   64 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~   64 (85)
                      |+.+++|..||.+++||.+....   +...+. |+..  |..+.+.+.|-- +++++.+|.|++||++..
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecc-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            57899999999999999986543   233333 5544  899999887654 999999999999999874

>smart00320 WD40 WD40 repeats

Probab=98.60  E-value=8.2e-07  Score=31.97  Aligned_cols=37  Identities=38%  Similarity=0.639  Sum_probs=30.1

Q ss_pred             eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEE
Q psy7058          23 LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN   60 (85)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (85)
                      +...+.. +...+.++.|.+.+..+++++.++.+++|+
T Consensus         4 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKG-HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEe-cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3344443 666799999999999999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1517|consensus

Probab=98.60  E-value=1e-06  Score=53.22  Aligned_cols=82  Identities=18%  Similarity=0.306  Sum_probs=60.2

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCcc---ccccccccccc--
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGE---VDKEYSGHQKA--   76 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~--   76 (85)
                      +|++++.-..|++||+...+....+......-++.+.-+. .|..++.|-.||.+++||.+...   .+...+.|++.  
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            4555665789999999988888777765555566665544 47899999999999999998654   34456666655  


Q ss_pred             eeEEEEeC
Q psy7058          77 ITSLAFCD   84 (85)
Q Consensus        77 v~~~~~~~   84 (85)
                      |..+++.+
T Consensus      1259 Iv~~slq~ 1266 (1387)
T KOG1517|consen 1259 IVHLSLQR 1266 (1387)
T ss_pred             ceeEEeec
Confidence            77766654

>KOG2695|consensus

Probab=98.59  E-value=3.8e-07  Score=48.98  Aligned_cols=70  Identities=10%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCcee---eeeeeccCCCc--EEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSL---VRELGTANQRW--VWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +++|.+++++++|++||.+--+.   +.++.+ |...  -.-+.+.+....++++++|...+||.++.+..+.+++
T Consensus       311 ~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG-HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  311 QQKLMASDMTGKIKLYDLRATKCKKSVMQYEG-HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             cceEeeccCcCceeEeeehhhhcccceeeeec-ccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            35788999999999999986665   555554 3221  1233455666677789999999999999887666554

>KOG0974|consensus

Probab=98.59  E-value=1e-06  Score=52.47  Aligned_cols=70  Identities=23%  Similarity=0.503  Sum_probs=56.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      |.++++.+.|..+++|++.+.+......-.|...++.+++.|.  .+++++.|.+.++|+.. +..+..+.+|
T Consensus       187 g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h  256 (967)
T KOG0974|consen  187 GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEH  256 (967)
T ss_pred             CcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhh
Confidence            5789999999999999999887766333348888999999888  89999999999999664 3333355555

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=5.4e-07  Score=50.00  Aligned_cols=81  Identities=11%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEc--CCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI--ETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~v~   78 (85)
                      |++++..+.++ +.+||+.+++....... .  ......|+|+|.+++.++.++...+|.+  .+++....+..+...+.
T Consensus       344 G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~  419 (429)
T PRK01742        344 GKTLVMINGDN-VVKQDLTSGSTEVLSST-F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVK  419 (429)
T ss_pred             CCEEEEEcCCC-EEEEECCCCCeEEecCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCC
Confidence            45666666554 56689887765432222 1  2346789999999999888888777775  35777777877888889


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      ..+|+|.
T Consensus       420 ~p~wsp~  426 (429)
T PRK01742        420 FPAWSPY  426 (429)
T ss_pred             CcccCCC
Confidence            9999984

>KOG4640|consensus

Probab=98.53  E-value=1.4e-06  Score=49.90  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEE-EEEecCCCCEEEEEcCCCeEEEEEcCCccccccc-cccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVW-DAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY-SGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~v~~   79 (85)
                      .++|.+..+|.+.+..+. .+.+..+.. ++..+. +++|.|||+.++.|=.||+|++.|+..+..+..+ ......|.+
T Consensus        33 dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~  110 (665)
T KOG4640|consen   33 DLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISK  110 (665)
T ss_pred             chhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchhe
Confidence            356788888888888877 666666664 333344 9999999999999999999999999888766552 124456666


Q ss_pred             EEEe
Q psy7058          80 LAFC   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +-|.
T Consensus       111 ~~w~  114 (665)
T KOG4640|consen  111 GIWD  114 (665)
T ss_pred             eecc
Confidence            6664

>KOG4532|consensus

Probab=98.51  E-value=8.6e-06  Score=42.79  Aligned_cols=84  Identities=8%  Similarity=0.148  Sum_probs=58.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCc-eeeee-eeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc-----ccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF-SLVRE-LGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD-----KEYSGHQ   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~   74 (85)
                      +++++.+....+..|.+... +.... ........-.+..|+.....+|++..||.+.|||++.....     .+-..|.
T Consensus       171 ~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hn  250 (344)
T KOG4532|consen  171 SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHN  250 (344)
T ss_pred             ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCC
Confidence            46667777777777776532 22222 22223334567888888899999999999999999865322     2344688


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ++++.+.|+++
T Consensus       251 Ga~R~c~Fsl~  261 (344)
T KOG4532|consen  251 GAFRVCRFSLY  261 (344)
T ss_pred             CceEEEEecCC
Confidence            99999999863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=3.2e-06  Score=47.02  Aligned_cols=81  Identities=17%  Similarity=0.105  Sum_probs=48.9

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEE-cCCCeEEEE--EcCCccccccccccc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA-SSDGVARLW--NIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~--~~~~~~~~~~~~~~~   74 (85)
                      |++|+..+.+   ..|++||+.+++......  .........|+|||+.++.+ +.++.+.+|  |+..+. ...+..+.
T Consensus       215 G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~  291 (429)
T PRK01742        215 GSKLAYVSFENKKSQLVVHDLRSGARKVVAS--FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGA  291 (429)
T ss_pred             CCEEEEEEecCCCcEEEEEeCCCCceEEEec--CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCC
Confidence            4566665533   469999998775432211  12224468999999988765 457765555  554443 33344445


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+....|+|
T Consensus       292 ~~~~~~~wSp  301 (429)
T PRK01742        292 GNNTEPSWSP  301 (429)
T ss_pred             CCcCCEEECC
Confidence            5566777776

>KOG0644|consensus

Probab=98.43  E-value=1e-07  Score=55.98  Aligned_cols=55  Identities=29%  Similarity=0.509  Sum_probs=49.4

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      +++++++|..|++|.++++.++..+.+ |.+.|+.++|+|..    +.+.||++++||.+
T Consensus       246 ~iaaaS~D~vIrvWrl~~~~pvsvLrg-htgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  246 MIAAASNDKVIRVWRLPDGAPVSVLRG-HTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hhhhcccCceEEEEecCCCchHHHHhc-cccceeeeccCccc----cCCCCCceEecccc
Confidence            468899999999999999999998888 88899999999866    56789999999987

>KOG4497|consensus

Probab=98.43  E-value=1e-05  Score=43.67  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=55.5

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE-EEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF-LLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      +.....++.+.+|++...+--.++.. .+..+..++|+|||+. +.+..-+-.|.+|.+.+.+.. .++..+..+..++|
T Consensus        64 lC~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f  141 (447)
T KOG4497|consen   64 LCVAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAF  141 (447)
T ss_pred             eeeeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEE
Confidence            45566788999999987777777766 6677999999999965 456667889999999765432 12212334455555


Q ss_pred             eC
Q psy7058          83 CD   84 (85)
Q Consensus        83 ~~   84 (85)
                      +|
T Consensus       142 ~~  143 (447)
T KOG4497|consen  142 HP  143 (447)
T ss_pred             CC
Confidence            54

>KOG1587|consensus

Probab=98.43  E-value=1e-06  Score=50.35  Aligned_cols=78  Identities=22%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             eEEeeCCCcEEEeeCC-CceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCc--cccccccccccceeE
Q psy7058           4 LATTSADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETG--EVDKEYSGHQKAITS   79 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~v~~   79 (85)
                      +++++ |-.+++|.-. ...+...+.. ....+.+++|+|.. ..|+++..+|.+.+||+...  .+..+........+.
T Consensus       414 fls~g-DW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~  491 (555)
T KOG1587|consen  414 FLSVG-DWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTR  491 (555)
T ss_pred             eeeec-cceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccce
Confidence            44555 8999999977 4455555554 55669999999965 56778888999999998643  333333333333444


Q ss_pred             EEEe
Q psy7058          80 LAFC   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +.|+
T Consensus       492 ~~~s  495 (555)
T KOG1587|consen  492 VRWS  495 (555)
T ss_pred             eecC
Confidence            4444

>KOG0642|consensus

Probab=98.43  E-value=9.4e-07  Score=49.79  Aligned_cols=71  Identities=20%  Similarity=0.391  Sum_probs=60.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      .+.+++..|+.|+++|..++++...... +...+.++++.|.|.++.+++.|+.+++|.+....+......|
T Consensus       502 ~~~~~~hed~~Ir~~dn~~~~~l~s~~a-~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  502 DITFTAHEDRSIRFFDNKTGKILHSMVA-HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             CeeEecccCCceecccccccccchheee-ccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            4568889999999999999999988887 7778999999999999999999999999998766555544433

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.42  E-value=2.2e-05  Score=44.32  Aligned_cols=81  Identities=14%  Similarity=0.049  Sum_probs=65.1

Q ss_pred             eeEEeeCCC-cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           3 LLATTSADQ-TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      -++.|.+|+ .+-++|..+++..+...  .-+.|..+..+++|+.++.+.....+.+.|+.+++....-+...+-|..+.
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~  450 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFD  450 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEE
Confidence            467788888 78899988776544433  345699999999999999999999999999999987766666778888898


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       451 ~~~n  454 (668)
T COG4946         451 WHPN  454 (668)
T ss_pred             EcCC
Confidence            8874

>KOG2139|consensus

Probab=98.35  E-value=2.1e-05  Score=42.84  Aligned_cols=54  Identities=19%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             CCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          32 QRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      ..+|.++.|++||..+++++- +..|+|||..++....-..-....+.-+.|||.
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd  249 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD  249 (445)
T ss_pred             CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence            367999999999999988775 568999999887654333334566777888874

>KOG4227|consensus

Probab=98.35  E-value=1.5e-05  Score=43.99  Aligned_cols=83  Identities=10%  Similarity=0.000  Sum_probs=61.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-ccccc--cccccce
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEY--SGHQKAI   77 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~--~~~~~~v   77 (85)
                      .+|.+|.+++++.+.|+.+.+.+...... ..+.+..+..+|....+++.+.++.+.+||.+... +...+  .-.....
T Consensus       118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            46889999999999999998887776542 23478999999998999999999999999998654 22111  1123344


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      +.+.|+|
T Consensus       198 ~t~~F~P  204 (609)
T KOG4227|consen  198 YTAEFHP  204 (609)
T ss_pred             eeeeecC
Confidence            5566655

>KOG2066|consensus

Probab=98.35  E-value=8.9e-06  Score=47.87  Aligned_cols=81  Identities=17%  Similarity=0.048  Sum_probs=60.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCC-----CCEEEEEcCCCeEEEEEcCCc--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD-----SKFLLTASSDGVARLWNIETG--EVDKEYSGH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~   73 (85)
                      |+++++|+.||++.+-.+.+.+...+..  ...++.+++++|+     ...+++|+..| +.++.-+-.  +....+...
T Consensus        83 Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   83 GEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            6789999999999999888887777666  4567999999997     45688888888 666653211  112235556


Q ss_pred             ccceeEEEEeC
Q psy7058          74 QKAITSLAFCD   84 (85)
Q Consensus        74 ~~~v~~~~~~~   84 (85)
                      .++|.+++|..
T Consensus       160 eG~I~~i~W~g  170 (846)
T KOG2066|consen  160 EGPIHSIKWRG  170 (846)
T ss_pred             ccceEEEEecC
Confidence            78999998864

>KOG1538|consensus

Probab=98.33  E-value=3.1e-06  Score=49.34  Aligned_cols=50  Identities=20%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             cEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .|..+++.|||+.++.+ .+..+.+||..+|..++++++|.+.|++++|+.
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~   63 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK   63 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEcc
Confidence            58899999999988776 445889999999999999999999999999975

>KOG1587|consensus

Probab=98.33  E-value=1.9e-05  Score=45.36  Aligned_cols=73  Identities=15%  Similarity=0.258  Sum_probs=53.5

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccc--ccc----ccccccceeEEEEe
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEV--DKE----YSGHQKAITSLAFC   83 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~--~~~----~~~~~~~v~~~~~~   83 (85)
                      ..+++|++........... ....+.++.++| +...++.|..+|.|.+||++.+..  ...    ...|..++..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            3689999987733333332 566799999999 677888999999999999987654  222    22577888888775


Q ss_pred             C
Q psy7058          84 D   84 (85)
Q Consensus        84 ~   84 (85)
                      .
T Consensus       301 ~  301 (555)
T KOG1587|consen  301 Q  301 (555)
T ss_pred             c
Confidence            3

>KOG1334|consensus

Probab=98.25  E-value=6.5e-07  Score=49.88  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      +++++|+..|.|.+|+-.+++.++-+.+ ....|+|+.-+|--..+++.+-+.-|+||....
T Consensus       407 EyVvSGSDCGhIFiW~K~t~eii~~Meg-Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  407 EYVVSGSDCGHIFIWDKKTGEIIRFMEG-DRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ceEEecCccceEEEEecchhHHHHHhhc-ccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            5789999999999999999998888777 444899999999999999999999999998743

>KOG2321|consensus

Probab=98.24  E-value=5.5e-06  Score=47.31  Aligned_cols=80  Identities=8%  Similarity=0.123  Sum_probs=59.8

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      .++.|..+|.+++||++..++...-...+.-+|..+.|.+.  ...+++ .....++|||-.+++....+. ....++.+
T Consensus       242 ~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~  319 (703)
T KOG2321|consen  242 HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIE-PTSDLNDF  319 (703)
T ss_pred             eEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecc-ccCCcCce
Confidence            47889999999999999988887766656778999999875  333444 456689999999998776665 33446655


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ++-|
T Consensus       320 C~~p  323 (703)
T KOG2321|consen  320 CFVP  323 (703)
T ss_pred             eeec
Confidence            5543

>KOG1240|consensus

Probab=98.24  E-value=2.4e-05  Score=48.21  Aligned_cols=61  Identities=18%  Similarity=0.311  Sum_probs=47.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCcee----e---eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSL----V---RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      .++++|+.||++++||.+....    .   .++.. ....+..+..-+.+..++.++.||.|++.++.-
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            6789999999999999874221    1   11221 345688888888999999999999999998864

>KOG2695|consensus

Probab=98.24  E-value=4.4e-06  Score=45.14  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCc-----eeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccc---ccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDF-----SLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEV---DKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~   71 (85)
                      ++++..|.++|.|...|++..     .+...+.  |...++++..-. +++++.+.+.+|.|.+||.+.-++   +.++.
T Consensus       264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe  341 (425)
T KOG2695|consen  264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE  341 (425)
T ss_pred             CCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee
Confidence            367889999999999999864     2333333  666677776544 788888999999999999987666   66676


Q ss_pred             ccc
Q psy7058          72 GHQ   74 (85)
Q Consensus        72 ~~~   74 (85)
                      +|-
T Consensus       342 GHv  344 (425)
T KOG2695|consen  342 GHV  344 (425)
T ss_pred             ccc
Confidence            663

>KOG1645|consensus

Probab=98.23  E-value=2e-05  Score=43.35  Aligned_cols=61  Identities=18%  Similarity=0.379  Sum_probs=51.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCcc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      ++..++.+..|++.|+++...+..+.. + ..+++.+|..+. +++..|..+|.|.+||+++.+
T Consensus       208 Ll~~asl~nkiki~dlet~~~vssy~a-~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  208 LLGLASLGNKIKIMDLETSCVVSSYIA-Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eeeeeccCceEEEEecccceeeeheec-c-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            567888999999999999888887776 4 679999999965 556778889999999998664

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=2e-05  Score=44.02  Aligned_cols=81  Identities=11%  Similarity=0.117  Sum_probs=53.5

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCe---EEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGV---ARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~~~   74 (85)
                      |++++..+.+   ..+.+||+.+++... +....  ......|+|||..++..+.++.   +.++++ ++.....+..+.
T Consensus       342 G~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~  417 (429)
T PRK03629        342 GKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD  417 (429)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC
Confidence            3455554433   357888988775432 22211  2346789999999888776653   666776 455566677777


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..+...+|+|.
T Consensus       418 ~~~~~p~Wsp~  428 (429)
T PRK03629        418 GQVKFPAWSPY  428 (429)
T ss_pred             CCcCCcccCCC
Confidence            88999999984

>KOG4547|consensus

Probab=98.21  E-value=5.1e-05  Score=43.21  Aligned_cols=82  Identities=7%  Similarity=0.043  Sum_probs=70.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeee-ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++-|...|.+.+|++..++....+. +.|.+.++++.++.+-..+.+++.|..+..|+.+..+......+....+.++.
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~  151 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC  151 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE
Confidence            46777888999999999999988887 45778899999999888999999999999999999888888877777777776


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      .+|
T Consensus       152 is~  154 (541)
T KOG4547|consen  152 ISP  154 (541)
T ss_pred             EcC
Confidence            665

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=5.6e-05  Score=42.26  Aligned_cols=81  Identities=14%  Similarity=0.037  Sum_probs=47.6

Q ss_pred             CceeEEeeC---CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEE--cCCccccccccccc
Q psy7058           1 MGLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWN--IETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~--~~~~~~~~~~~~~~   74 (85)
                      |+.|+..+.   ...|++||+.+++.... .. .........|+|||+.++ +.+.++...+|.  ...+. ...+..+.
T Consensus       207 G~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~  283 (427)
T PRK02889        207 GTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS  283 (427)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence            355655443   24599999988765432 22 233456889999998876 556777666665  43333 33333333


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      .......|+|
T Consensus       284 ~~~~~~~wSp  293 (427)
T PRK02889        284 GIDTEPFFSP  293 (427)
T ss_pred             CCCcCeEEcC
Confidence            3344566765

>KOG1064|consensus

Probab=98.20  E-value=7.5e-06  Score=52.13  Aligned_cols=80  Identities=21%  Similarity=0.258  Sum_probs=67.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++++|+.|+.+++|....+..+...+...+..++.+.|+.+|..+..+..||.+.+|.+. .++....+.|....+++.
T Consensus      2221 ~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred             ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcccccee
Confidence            4679999999999999999988888877566789999999999999999999999999997 566666666777766666


Q ss_pred             E
Q psy7058          82 F   82 (85)
Q Consensus        82 ~   82 (85)
                      |
T Consensus      2300 F 2300 (2439)
T KOG1064|consen 2300 F 2300 (2439)
T ss_pred             e
Confidence            5

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=98.20  E-value=2.3e-05  Score=30.63  Aligned_cols=34  Identities=9%  Similarity=0.122  Sum_probs=29.5

Q ss_pred             CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058          32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      ...+..+.|+|....++.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456899999999999999999999999998 4443

>KOG0280|consensus

Probab=98.19  E-value=6.2e-05  Score=40.07  Aligned_cols=81  Identities=15%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             eeEEeeCCCcEEEeeCCCcee--eeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcC-Ccccccc-ccccccce
Q psy7058           3 LLATTSADQTARIWNTEDFSL--VRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIE-TGEVDKE-YSGHQKAI   77 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~~~~~~~v   77 (85)
                      .++++..++.+.+-+...+..  ....+. |..+++...|+. +...+.+|++|+.+..||++ .++.+.. .+.|...|
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV  213 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGV  213 (339)
T ss_pred             eEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecce
Confidence            456666667766433332222  223344 777788888877 45678899999999999999 3344433 45677788


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      .++.-+|
T Consensus       214 ~SI~ss~  220 (339)
T KOG0280|consen  214 VSIYSSP  220 (339)
T ss_pred             EEEecCC
Confidence            7776655

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=8.5e-05  Score=41.60  Aligned_cols=81  Identities=12%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             CceeEEee---CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCC--eEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTS---ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDG--VARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |+.|+..+   .+..|++||+.+++... +.. ....+....|+|||+.++ +.+.++  .|+++|+..+.. ..+..+.
T Consensus       213 G~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~  289 (435)
T PRK05137        213 RQEITYMSYANGRPRVYLLDLETGQREL-VGN-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSP  289 (435)
T ss_pred             CCEEEEEEecCCCCEEEEEECCCCcEEE-eec-CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCC
Confidence            34555544   24679999998776533 222 344567889999998765 445554  477778876543 2333333


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      .......|+|
T Consensus       290 ~~~~~~~~sp  299 (435)
T PRK05137        290 AIDTSPSYSP  299 (435)
T ss_pred             CccCceeEcC
Confidence            4445566665

>KOG2079|consensus

Probab=98.15  E-value=7.2e-06  Score=49.68  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=57.6

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +++.|+..|.+...|....-...........++.+++++.+|+.++.|-.+|.|.+||+..++.+..+..+..+...+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            467778888888888664211111112245789999999999999999999999999999888877777666555544

>KOG4714|consensus

Probab=98.14  E-value=3.9e-06  Score=43.79  Aligned_cols=52  Identities=15%  Similarity=0.196  Sum_probs=42.3

Q ss_pred             cEEEEEecC-CCCEEEEEcCCCeEEEEEcCCcc-ccccccccccceeEEEEeCC
Q psy7058          34 WVWDAAFTL-DSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        34 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~   85 (85)
                      .+.+++-+| +.+.++.|+.+|.+.+||.++.. +...+..|+.+++.+-|+|.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence            388888888 45667888999999999998764 44567789999999999873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.00012  Score=41.02  Aligned_cols=81  Identities=15%  Similarity=0.050  Sum_probs=48.6

Q ss_pred             CceeEEeeC---CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCC--eEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSA---DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDG--VARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |+.|+..+.   +..|++||+.+++..... . .........|+|+|+.++ +.+.++  .|++||+..++.. .+..+.
T Consensus       215 g~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~  291 (433)
T PRK04922        215 GKKLAYVSFERGRSAIYVQDLATGQRELVA-S-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHF  291 (433)
T ss_pred             CCEEEEEecCCCCcEEEEEECCCCCEEEec-c-CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCC
Confidence            345665543   346999999877653322 2 233345789999998765 444444  6999998776532 233333


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ......+|+|
T Consensus       292 ~~~~~~~~sp  301 (433)
T PRK04922        292 GIDTEPTWAP  301 (433)
T ss_pred             CCccceEECC
Confidence            3344566665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.10  E-value=4.2e-05  Score=40.29  Aligned_cols=46  Identities=15%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccc
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKA   76 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   76 (85)
                      ....|..+.++|||..+++...+|.|.+|++++.+..+....++.+
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP  273 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP  273 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence            4567899999999999999999999999999988877776644433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.00012  Score=41.00  Aligned_cols=81  Identities=16%  Similarity=0.102  Sum_probs=48.6

Q ss_pred             CceeEEee---CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEE-cCCC--eEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTS---ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA-SSDG--VARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |+.|+..+   .+..+++||+.+++......  .........|+|||+.++.. +.++  .|++||+.+++...... +.
T Consensus       210 G~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~  286 (429)
T PRK03629        210 GSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GR  286 (429)
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CC
Confidence            34555432   23568899988775433221  22234568999999987754 4444  58889998765433222 33


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+....|+|
T Consensus       287 ~~~~~~~wSP  296 (429)
T PRK03629        287 SNNTEPTWFP  296 (429)
T ss_pred             CCcCceEECC
Confidence            4556677776

>KOG1912|consensus

Probab=98.08  E-value=3.1e-05  Score=45.97  Aligned_cols=82  Identities=22%  Similarity=0.272  Sum_probs=64.6

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC---CC-CEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL---DS-KFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      .++++...|.|.+||...+.....+.. +..++..++|-+   +. ..++.-.....+-+|+..+|..+..+........
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs  159 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS  159 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence            467888899999999998777776665 667789999876   23 4566667778999999999998888876667777


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      |+.+.|+
T Consensus       160 ~f~~DPf  166 (1062)
T KOG1912|consen  160 CFRVDPF  166 (1062)
T ss_pred             eeeeCCC
Confidence            7777664

>KOG1240|consensus

Probab=98.08  E-value=4.4e-05  Score=47.17  Aligned_cols=81  Identities=15%  Similarity=0.193  Sum_probs=59.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-ccccceeEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSL   80 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~v~~~   80 (85)
                      .|+.+...+.+..||+++.....+++.. ..+.+++++.+|.+.+++.|...|.+.+||++-..++.... .+..+++.+
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred             eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence            4566667788999999877655554432 34679999999999999999999999999998776655443 123455555


Q ss_pred             EEe
Q psy7058          81 AFC   83 (85)
Q Consensus        81 ~~~   83 (85)
                      ..+
T Consensus      1245 ~~~ 1247 (1431)
T KOG1240|consen 1245 WLC 1247 (1431)
T ss_pred             Eee
Confidence            444

>KOG3621|consensus

Probab=98.08  E-value=2.5e-05  Score=45.51  Aligned_cols=85  Identities=11%  Similarity=0.159  Sum_probs=60.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc-cc-----cccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK-EY-----SGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~-----~~~~   74 (85)
                      +++++.|+..|.+++|+-..++............+....++++..+++.++..+.|.++.++...+.. .+     +.|.
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~  124 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK  124 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence            36789999999999999776554433332233445566778888889999999999999987653321 11     1367


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..|++++|++.
T Consensus       125 ~rVTal~Ws~~  135 (726)
T KOG3621|consen  125 CRVTALEWSKN  135 (726)
T ss_pred             ceEEEEEeccc
Confidence            88999999863

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.07  E-value=0.0002  Score=40.20  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=47.2

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS---DGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      ..|.++|...... ..+.. +...+....|+|||+.++..+.   +..|++||+..++.. .+......+...+|+|
T Consensus       182 ~~l~~~d~dg~~~-~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQDGANV-RYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCCCCCc-EEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC
Confidence            3688888764443 33333 5567899999999998877653   468999999876542 2333344555666666

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.06  E-value=0.00022  Score=38.50  Aligned_cols=63  Identities=16%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             CceeEEeeC-CCcEEEeeCCC--ce--eeeeeec-----cCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCC
Q psy7058           1 MGLLATTSA-DQTARIWNTED--FS--LVRELGT-----ANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIET   63 (85)
Q Consensus         1 g~~l~~~~~-~~~i~~~d~~~--~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~   63 (85)
                      |++++++.. ++.+.+|++..  ++  ....+..     ........+.++|++++++++.. ++.|.+|++..
T Consensus       186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            356666655 88999999873  22  2222221     01112346889999999888754 68999999854

>KOG1275|consensus

Probab=98.05  E-value=1.4e-05  Score=47.95  Aligned_cols=67  Identities=10%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC---------CCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS---------DGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+.+|...|++.+-|.++.+...++.. |.+.+.++..  +|..+++++.         |.-+++||++..+.+..+.
T Consensus       188 r~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  188 RNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             cEEEeecccceEEeecCCcCceeeeeec-cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence            5678899999999999999999999988 8888888766  6889988874         4468999999887665554

>KOG1334|consensus

Probab=98.04  E-value=1.5e-05  Score=44.80  Aligned_cols=84  Identities=24%  Similarity=0.280  Sum_probs=61.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCcc-c--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGE-V--DKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~--~~~~~~~~~   75 (85)
                      |..|++++.|..+.+||+..+.....+..+|...+.-..|-|  +...+++.+.||.+++-.+.... +  ...+..|.+
T Consensus       154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g  233 (559)
T KOG1334|consen  154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG  233 (559)
T ss_pred             CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence            567999999999999999999888888776766666666766  34568888999999988765432 2  223445777


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      +|+.++.-|
T Consensus       234 ~vhklav~p  242 (559)
T KOG1334|consen  234 PVHKLAVEP  242 (559)
T ss_pred             ccceeeecC
Confidence            777666533

>KOG2315|consensus

Probab=98.03  E-value=6.2e-05  Score=42.88  Aligned_cols=59  Identities=14%  Similarity=0.374  Sum_probs=43.9

Q ss_pred             CceeEEee---CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC------CCeEEEEEcC
Q psy7058           1 MGLLATTS---ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS------DGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~   62 (85)
                      |+.++.++   ..|.+-+||+.+.+.+..+.. ..  -+-..|+|||.+++++..      |..++||+..
T Consensus       323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-AN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCEEEEeecCCCCCceEEEeccchhhcccccc-CC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            34555444   347799999999888777765 22  467889999999998764      5678999885

>KOG2314|consensus

Probab=98.03  E-value=3.9e-05  Score=43.96  Aligned_cols=73  Identities=12%  Similarity=0.096  Sum_probs=51.3

Q ss_pred             CcEEEeeCCCceeeeeeec--cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          11 QTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      ..+.+||+.+|...+.+..  .......-..||.|++++|-... ..|.||+..+...+-.-...-..|...+|+|
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP  356 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSP  356 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCC
Confidence            5689999999988877765  12223456789999999987766 4788898876554433333445677777776

>KOG1963|consensus

Probab=98.03  E-value=7.7e-05  Score=44.25  Aligned_cols=63  Identities=13%  Similarity=0.027  Sum_probs=52.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      |.+|++|+..+.+.+|...+++....  ..-..+|..+.++||+...+....|..|.+....+..
T Consensus       263 G~~LlSGG~E~VLv~Wq~~T~~kqfL--PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  263 GAYLLSGGREGVLVLWQLETGKKQFL--PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             CceEeecccceEEEEEeecCCCcccc--cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            57899999999999999998883332  2256789999999999999999999999888775543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.99  E-value=0.00012  Score=40.96  Aligned_cols=71  Identities=13%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS---DGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      ..|.++|.. +.....+.. +...+....|+|||+.++..+.   ...|.+||+..++... +......+...+|+|
T Consensus       176 ~~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence            457777764 333333333 4556889999999998877653   2469999998775432 222223445666766

>KOG1064|consensus

Probab=97.96  E-value=1.3e-05  Score=51.14  Aligned_cols=63  Identities=13%  Similarity=0.255  Sum_probs=48.6

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .++.+.+||..-......+...|...++++.+.|..+.+++|+.+|.+++||+++.+.+..++
T Consensus      2313 d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred             CCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence            457899999764333333334588889999999999999999999999999998776554443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.94  E-value=0.00014  Score=40.80  Aligned_cols=81  Identities=14%  Similarity=0.170  Sum_probs=50.5

Q ss_pred             CceeEEeeCCC---cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC---CeEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSADQ---TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD---GVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |++++..+.++   .|.+||+.+++.. .+..  ........|+|+|+.++..+.+   ..+.+++.. +.....+..+.
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~  422 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSAD  422 (433)
T ss_pred             CCEEEEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCC
Confidence            34555443332   5889998877654 2222  1224457899999987765542   357777774 44445555455


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..+...+|+|.
T Consensus       423 g~~~~p~wsp~  433 (433)
T PRK04922        423 GEVREPAWSPY  433 (433)
T ss_pred             CCCCCCccCCC
Confidence            67788889884

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.92  E-value=0.00055  Score=36.96  Aligned_cols=57  Identities=14%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             eEEeeCCCcEEEeeCCC-ce--eeeeeeccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEcC
Q psy7058           4 LATTSADQTARIWNTED-FS--LVRELGTANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNIE   62 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~   62 (85)
                      +++...++.|.+||+.+ ++  ....+.  .......+.++|++++++.++ .++.|.+|++.
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~   65 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA   65 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence            44557789999999963 33  333333  234467889999999887654 57889999986

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.90  E-value=2.3e-05  Score=28.97  Aligned_cols=17  Identities=41%  Similarity=0.757  Sum_probs=15.4

Q ss_pred             CceeEEeeCCCcEEEee
Q psy7058           1 MGLLATTSADQTARIWN   17 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d   17 (85)
                      ++++++++.|+.|++||
T Consensus        23 ~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   23 GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEETTSEEEEEE
T ss_pred             cccceeeCCCCEEEEEC
Confidence            46899999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.90  E-value=0.00027  Score=40.59  Aligned_cols=52  Identities=17%  Similarity=0.065  Sum_probs=38.5

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .+..+.+.+++|+...++.|+.||.|.+||...+.....  ...-..+.++|+|
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp  309 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHP  309 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcC
Confidence            556789999999999999999999999999876533222  1223445666665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.89  E-value=0.00053  Score=38.38  Aligned_cols=81  Identities=14%  Similarity=0.042  Sum_probs=46.6

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCC--eEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDG--VARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |++|+..+.+   ..|.+||+.+++......  .........|+|+|+.++ +...++  .|+++|+..+... .+..+.
T Consensus       210 G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~  286 (430)
T PRK00178        210 GKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP  286 (430)
T ss_pred             CCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence            3556544422   368888988776533221  223345689999998876 444444  6888898766532 222233


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      .......|+|
T Consensus       287 ~~~~~~~~sp  296 (430)
T PRK00178        287 AIDTEPFWGK  296 (430)
T ss_pred             CCcCCeEECC
Confidence            3344455655

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.86  E-value=0.00072  Score=37.54  Aligned_cols=63  Identities=16%  Similarity=0.037  Sum_probs=39.8

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEE-EcCCC--eEEEEEcCCcc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT-ASSDG--VARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~i~~~~~~~~~   65 (85)
                      |++|+....+   ..|++||+.+++......  .........|+|+++.++. .+.++  .|++|++.+++
T Consensus       201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       201 GQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            3455544432   479999998775533222  3334566899999987664 44443  58888887654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.85  E-value=0.00059  Score=37.89  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=44.1

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC---CeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD---GVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .|.++|...... ..+.. ....+....|+|+|+.++.....   ..|++|++.+++... +..+...+..++|+|
T Consensus       171 ~l~~~d~~g~~~-~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       171 ELQVADYDGANP-QTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP  243 (417)
T ss_pred             eEEEEcCCCCCC-EEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence            577888754433 33333 44457888999999998876543   479999998764322 222333445566665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.83  E-value=0.00013  Score=43.73  Aligned_cols=58  Identities=17%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      .++|.|+.+|.|++||-........+++ .+.+|..++.+.||++++..+.. .+.+++.
T Consensus       589 G~iavgs~~G~IRLyd~~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  589 GYIAVGSNKGDIRLYDRLGKRAKTALPG-LGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             ceEEEEeCCCcEEeecccchhhhhcCCC-CCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            5799999999999999543332223333 67889999999999998877666 4444553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3914|consensus

Probab=97.83  E-value=0.00021  Score=39.26  Aligned_cols=53  Identities=21%  Similarity=0.382  Sum_probs=43.6

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-ccccceeEEEEe
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSLAFC   83 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~   83 (85)
                      |-..+..+.++||++++++++.|..|++-.......+..+. +|.+-|..++.-
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~  203 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT  203 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence            77789999999999999999999999999887666665554 587777776653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.82  E-value=0.00084  Score=37.82  Aligned_cols=82  Identities=11%  Similarity=0.004  Sum_probs=50.9

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc-C--CCeEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS-S--DGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |++|+..+.+   ..|.+||+.+++.......  ...+....|+|+|+.++... .  ...+.++++..++...-.. ..
T Consensus       338 G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~  414 (428)
T PRK01029        338 GKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GS  414 (428)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CC
Confidence            3555544432   3688999987766443222  23456789999998876433 2  3468888887665433332 34


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..+...+|+|.
T Consensus       415 g~~~~p~Ws~~  425 (428)
T PRK01029        415 GEKRFPSWGAF  425 (428)
T ss_pred             CcccCceecCC
Confidence            45677888874

>KOG4497|consensus

Probab=97.80  E-value=3.3e-05  Score=41.81  Aligned_cols=82  Identities=17%  Similarity=0.156  Sum_probs=61.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+++|+.++- .+.+-|..+.+....+..  -..|..+.|.-|..+++ ....++.|.+|++.+.+-...+.....++..
T Consensus        20 g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~   96 (447)
T KOG4497|consen   20 GNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSS   96 (447)
T ss_pred             CCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCccee
Confidence            5677777765 677778877665443332  23477788888876655 4567889999999999888888888899999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|||.
T Consensus        97 ~~WSPd  102 (447)
T KOG4497|consen   97 ISWSPD  102 (447)
T ss_pred             eeECCC
Confidence            999984

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.75  E-value=0.00091  Score=38.20  Aligned_cols=64  Identities=9%  Similarity=0.150  Sum_probs=50.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC----eEEEEEcCCcc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG----VARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~   65 (85)
                      |++++.+.....+-+.|+.+++....-+. ....|..+.|+|++.+++.+--++    .|+++|+..++
T Consensus       413 GK~~vvaNdr~el~vididngnv~~idkS-~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         413 GKKVVVANDRFELWVIDIDNGNVRLIDKS-EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             CcEEEEEcCceEEEEEEecCCCeeEeccc-ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            45677777777888999999887655444 556799999999999999876655    68999987655

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.74  E-value=0.001  Score=37.66  Aligned_cols=81  Identities=17%  Similarity=0.042  Sum_probs=45.8

Q ss_pred             CceeEEeeC-C--CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEE-EcCCCe--EEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSA-D--QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT-ASSDGV--ARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~-~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--i~~~~~~~~~~~~~~~~~~   74 (85)
                      |++|+..+. +  ..|+++|+.+++......  .........|+|||+.++. .+.++.  |+++|+..++.. .+..+.
T Consensus       229 G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~  305 (448)
T PRK04792        229 GRKLAYVSFENRKAEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR  305 (448)
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence            345554432 2  358888988766533221  2222346789999997764 455554  777787765432 232233


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ......+|+|
T Consensus       306 ~~~~~p~wSp  315 (448)
T PRK04792        306 AIDTEPSWHP  315 (448)
T ss_pred             CCccceEECC
Confidence            3445566665

>KOG1912|consensus

Probab=97.73  E-value=0.00034  Score=41.95  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC------------CEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS------------KFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      +++-|+ ...+.+-|.++-+.+..+.. |+..|+.+.|.|..            -.+++++..|.|.+||...+..+..+
T Consensus        28 LiAygs-hslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l  105 (1062)
T KOG1912|consen   28 LIAYGS-HSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL  105 (1062)
T ss_pred             eEEEec-CceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh
Confidence            344443 45788889998888888877 77889999998731            13567777899999999998888888


Q ss_pred             cccccceeEEEEeC
Q psy7058          71 SGHQKAITSLAFCD   84 (85)
Q Consensus        71 ~~~~~~v~~~~~~~   84 (85)
                      ..+.+++.++.|-+
T Consensus       106 ~~~~~~~qdl~W~~  119 (1062)
T KOG1912|consen  106 SHSNDSVQDLCWVP  119 (1062)
T ss_pred             cCCCcchhheeeee
Confidence            88888888888854

>KOG2315|consensus

Probab=97.72  E-value=0.00095  Score=38.38  Aligned_cols=67  Identities=15%  Similarity=0.223  Sum_probs=44.9

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS---DGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .+.++|.+ +.++..+.   .++-+++-|+|.|++++.++-   .|.+-+||+.+.+.+..+....  .+-+.|+|
T Consensus       295 kvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~P  364 (566)
T KOG2315|consen  295 KVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSP  364 (566)
T ss_pred             eEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcC
Confidence            34444443 34444332   345788999999999887654   5789999999988777776433  33366666

>KOG4532|consensus

Probab=97.71  E-value=0.00089  Score=35.64  Aligned_cols=64  Identities=11%  Similarity=0.053  Sum_probs=47.2

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeee----eccCCCcEEEEEecCCCC--EEEEEcCCCeEEEEEcCCccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVREL----GTANQRWVWDAAFTLDSK--FLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      .+|++.+|+.+.+||++....+...    +..+.+.+..+.|++-|.  +++..-.-+.+.+.|+++.+.
T Consensus       217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            5799999999999999976544322    223677899999998664  344555567899999987753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.71  E-value=0.0015  Score=36.07  Aligned_cols=63  Identities=13%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCC------CcEEEEEecCCCCEEEEEc-C-CCeEEEEEcCCcccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQ------RWVWDAAFTLDSKFLLTAS-S-DGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~~   71 (85)
                      .+..|.+||+.+.+....+.....      .....+.++|||++++... . +..+.+.|+..++.+.++.
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~  145 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD  145 (352)
T ss_pred             CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence            578899999999999888774211      2234788999999988765 3 6899999999888776655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409|consensus

Probab=97.70  E-value=8.9e-05  Score=40.27  Aligned_cols=63  Identities=16%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      +.|.+|..|..+.+||+...+...-....+...+..+...+.-+.+.+++.|+.|.+|+++..
T Consensus       210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            467899999999999997655444333336667777777777788899999999999998754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.61  E-value=0.0013  Score=36.22  Aligned_cols=71  Identities=15%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      +.+..++.++.+..+|..+++..-...............  .+..++.++.++.++++|..+++.+..+..+.
T Consensus       280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       280 NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence            456666777888888887776654432101111111111  35678888999999999999898877665433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.53  E-value=0.0028  Score=33.77  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=27.8

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      ..-..++|+||+..++.+.+.|+|++||+..
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            4567899999999999999999999999853

>KOG4649|consensus

Probab=97.51  E-value=0.0026  Score=33.92  Aligned_cols=70  Identities=10%  Similarity=-0.043  Sum_probs=50.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |++++.|...+.+++.+..++.....+.....- -......+++..+..++.|++.+..|.++..++.+.+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhh-ccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            578899999999999999998665555441211 1223346788899999999999999988766554433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.51  E-value=0.0047  Score=34.97  Aligned_cols=82  Identities=16%  Similarity=0.024  Sum_probs=44.2

Q ss_pred             CceeEEe-eCCCc--EEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC---CeEEEEEcCCcccccccccc
Q psy7058           1 MGLLATT-SADQT--ARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLTASSD---GVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         1 g~~l~~~-~~~~~--i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~   73 (85)
                      |+.|+.. ..++.  ++++++.. +.....+.. ....+....|+|||+.++....+   ..|.+||+..++...-.. .
T Consensus       292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~  369 (428)
T PRK01029        292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-S  369 (428)
T ss_pred             CCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-C
Confidence            3445433 34554  44444432 222233322 23345678899999988765443   468999997775432221 2


Q ss_pred             ccceeEEEEeC
Q psy7058          74 QKAITSLAFCD   84 (85)
Q Consensus        74 ~~~v~~~~~~~   84 (85)
                      ...+....|+|
T Consensus       370 ~~~~~~p~wSp  380 (428)
T PRK01029        370 PENKESPSWAI  380 (428)
T ss_pred             CCCccceEECC
Confidence            23445566665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.50  E-value=0.0043  Score=34.33  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEc-CCCeEEEEEcCCccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTAS-SDGVARLWNIETGEVDKEY   70 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~   70 (85)
                      +.+-++|+.+++....+..  ......+.+++|++ .+++.. .++.|.++|..+++.+..+
T Consensus       279 ~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            4788999999999998875  34589999999999 776655 5788999999999888777

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.49  E-value=0.0042  Score=38.92  Aligned_cols=66  Identities=11%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc------------CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA------------NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      |+.+++-..++.|++||..++........+            .-.....++++++|..+++-..++.|++||+.+++.
T Consensus       815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            345667777889999998876554322110            012356789999999888888899999999987653

>KOG0309|consensus

Probab=97.48  E-value=0.0002  Score=42.67  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=58.1

Q ss_pred             eeEEeeCCCcEEEeeCCCce-eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-ccccccccccceeEE
Q psy7058           3 LLATTSADQTARIWNTEDFS-LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAITSL   80 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~v~~~   80 (85)
                      .+++++-|..+..||+++.. +...... .......+.|+.....++..+..+.+++||.+.+. ++..+++|...|+.+
T Consensus       129 Vlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~  207 (1081)
T KOG0309|consen  129 VLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI  207 (1081)
T ss_pred             ceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence            47899999999999998764 4445444 33446778898855555555677899999998764 556677777777776


Q ss_pred             EEe
Q psy7058          81 AFC   83 (85)
Q Consensus        81 ~~~   83 (85)
                      .|+
T Consensus       208 ~fn  210 (1081)
T KOG0309|consen  208 DFN  210 (1081)
T ss_pred             HHh
Confidence            654

>KOG2041|consensus

Probab=97.47  E-value=0.0014  Score=39.32  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=59.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceee---------------eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLV---------------RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      ++++.|+.||.+++..+.+...-               ..+. +|+..+.-+.|+...+.+-+.+.+|.|.+|-+-.+.-
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW  105 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW  105 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence            57899999999999877543211               1122 3778899999999889999999999999999887764


Q ss_pred             ccccc--ccccceeEEEEe
Q psy7058          67 DKEYS--GHQKAITSLAFC   83 (85)
Q Consensus        67 ~~~~~--~~~~~v~~~~~~   83 (85)
                      ...+-  -...-|.+|+|+
T Consensus       106 ~EEMiNnRnKSvV~SmsWn  124 (1189)
T KOG2041|consen  106 CEEMINNRNKSVVVSMSWN  124 (1189)
T ss_pred             HHHHhhCcCccEEEEEEEc
Confidence            43322  234566777775

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.46  E-value=0.0032  Score=35.35  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC---CeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD---GVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .|.++|....+. ..+.. +...+....|+|+|+.++..+.+   ..|.+|++..++... +......+...+|+|
T Consensus       180 ~l~~~d~~g~~~-~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp  252 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP  252 (430)
T ss_pred             EEEEECCCCCCc-eEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC
Confidence            377778765443 33333 45568899999999988765433   468899997765322 221222334566665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.44  E-value=0.0037  Score=35.60  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=36.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |..|+..+. +.|.+||+.+++.++++.. .  .+..+-|++++.+++..+.+ .+.+.+..
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v-~--~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDV-S--AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEec-C--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            344555544 4799999999999998874 2  38999999999999988766 66666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2066|consensus

Probab=97.44  E-value=0.002  Score=38.73  Aligned_cols=74  Identities=14%  Similarity=0.152  Sum_probs=51.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .+++-|..+|.+++++.. +++ .+... +...      ..+|.++++++.||.+.|..+-+.+..-++. ...++.+++
T Consensus        50 ~~~~~GtH~g~v~~~~~~-~~~-~~~~~-~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia  119 (846)
T KOG2066|consen   50 KFFALGTHRGAVYLTTCQ-GNP-KTNFD-HSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA  119 (846)
T ss_pred             ceeeeccccceEEEEecC-Ccc-ccccc-cccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence            467777788888887755 333 22222 2221      5589999999999999999887776655554 457888888


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      ++|+
T Consensus       120 l~Pd  123 (846)
T KOG2066|consen  120 LHPD  123 (846)
T ss_pred             eccc
Confidence            8874

>KOG3621|consensus

Probab=97.33  E-value=0.0021  Score=38.12  Aligned_cols=61  Identities=13%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeee-----eccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           3 LLATTSADQTARIWNTEDFSLVREL-----GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      ++|.|+..+.|.++-+....+....     ...|+..|++++|++++..+++|++.|.|..-.+..
T Consensus        90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            4577788888888887764432222     222577899999999999999999999998877765

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=97.33  E-value=0.0056  Score=31.69  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=45.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeee------ec-------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVREL------GT-------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      +++|++-..+|.+++||+.+++.....      -.       .....|..+.++.+|..+++-+ ++..+.|+...+
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            467888889999999999987764433      11       1335688888888898877764 567788877544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.28  E-value=0.004  Score=28.84  Aligned_cols=55  Identities=16%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      +.|++|+.|..|++|+-  .+.+..+..  ...+..+.-... ..++.+-.+|+|-+|+-
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e--~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITE--TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEec--ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            46899999999999984  456666654  334666655444 56888888888877764

>KOG2314|consensus

Probab=97.22  E-value=0.0022  Score=37.33  Aligned_cols=67  Identities=22%  Similarity=0.391  Sum_probs=44.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC-----------CCeEEEEEcCCccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-----------DGVARLWNIETGEVDKEY   70 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~~~   70 (85)
                      .+|++=... -|.+|--.+.....++.  |+ .+..+.|||..++|++-+.           ...+.|||+.+|...+.+
T Consensus       223 TYL~t~Hk~-GI~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF  298 (698)
T KOG2314|consen  223 TYLVTFHKQ-GIALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF  298 (698)
T ss_pred             eEEEEEecc-ceeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce
Confidence            344444433 35666655544444443  43 4889999999999998652           257999999999877766


Q ss_pred             cc
Q psy7058          71 SG   72 (85)
Q Consensus        71 ~~   72 (85)
                      ..
T Consensus       299 ~~  300 (698)
T KOG2314|consen  299 PV  300 (698)
T ss_pred             ec
Confidence            54

>KOG4190|consensus

Probab=97.20  E-value=0.0012  Score=38.57  Aligned_cols=66  Identities=20%  Similarity=0.258  Sum_probs=52.1

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeecc----CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTA----NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      +-++...+++++|.+..+-...++..    .+..+.++++.+.|.+++.+-++|+|.+.|.++++.+...
T Consensus       845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw  914 (1034)
T KOG4190|consen  845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW  914 (1034)
T ss_pred             eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence            33467789999999988766655431    2345789999999999999999999999999999866543

>KOG1275|consensus

Probab=97.19  E-value=0.0096  Score=36.78  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=60.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      .++.|+-...+..+|.++.+..+.... ....+.-++.  +++.+.+|+..|+|.+-|.++.+.+.++..|.+.|.++..
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv  225 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV  225 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence            355666666777788888877766654 2223555554  6889999999999999999999999999999999987764


Q ss_pred             e
Q psy7058          83 C   83 (85)
Q Consensus        83 ~   83 (85)
                      .
T Consensus       226 ~  226 (1118)
T KOG1275|consen  226 Q  226 (1118)
T ss_pred             c
Confidence            3

>KOG4190|consensus

Probab=97.13  E-value=0.0018  Score=37.88  Aligned_cols=64  Identities=19%  Similarity=0.345  Sum_probs=45.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCc-------eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK   68 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   68 (85)
                      +.+++++.|.++++|.++..       .+..++.. |..+|+++.+--+-+.+++  -|+.|.+||.--++++.
T Consensus       748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~La  818 (1034)
T KOG4190|consen  748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLA  818 (1034)
T ss_pred             cceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee--ccCcceeecccccchhH
Confidence            45789999999999998742       23334444 7888999988666555544  57889999976665554

>KOG2395|consensus

Probab=97.10  E-value=0.0028  Score=36.73  Aligned_cols=54  Identities=13%  Similarity=0.113  Sum_probs=40.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVA   56 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   56 (85)
                      .+++.|+.+|.|++||- .+....+...+...+|..+..+.+|.+++..+..-.+
T Consensus       442 G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLl  495 (644)
T KOG2395|consen  442 GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLL  495 (644)
T ss_pred             ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEE
Confidence            57899999999999997 4433333333367789999999999998876665433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.10  E-value=0.012  Score=33.61  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC-CC--eEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-DG--VARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      .|.++|+.+++... +.. . .......|+|+|..++.... ++  .+.+++. ++.....+......+...+|+|.
T Consensus       375 ~I~~~dl~~g~~~~-lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        375 NIARQDLETGAMQV-LTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             EEEEEECCCCCeEE-ccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            45567777665432 221 1 11223479999998765443 33  4677776 45555556555567788889884

>KOG3617|consensus

Probab=97.09  E-value=0.0034  Score=38.55  Aligned_cols=58  Identities=16%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |+++-.-+.+.+|...+.+ ..++...|+.++..+.|+++|..+.+++.-|.+.+|...
T Consensus        74 La~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4566667888898877544 344444588899999999999999999999999999875

>KOG1645|consensus

Probab=96.98  E-value=0.0022  Score=35.87  Aligned_cols=52  Identities=23%  Similarity=0.233  Sum_probs=42.8

Q ss_pred             CCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058          31 NQRWVWDAAFTLDSK-FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      +...|.+++++|... .+..++.+..|.+.|+++......+..+ ..+.+++|.
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wD  244 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWD  244 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeec
Confidence            556688999999766 5778889999999999998888888766 788888874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.96  E-value=0.021  Score=31.60  Aligned_cols=64  Identities=14%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK   68 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   68 (85)
                      +.++.++.++.++.+|..+++..-+...... .......  ++..++.++.++.+..+|..+++.+.
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W  129 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLDER-LSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELW  129 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCCCC-cccceEE--cCCEEEEEcCCCEEEEEECCCCcEee
Confidence            4567777778888888877776654433111 0111111  34555566666777777766665443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.90  E-value=0.017  Score=29.65  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=45.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeee-eccCC--CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVREL-GTANQ--RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      +.++.+..++.++.+|..+++..-+. .....  ...........+..++.+..++.+..+|.++++.+.....
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            45566667778888998888887763 32111  1111222222377778888899999999999987766554

...

>KOG1354|consensus

Probab=96.85  E-value=0.0082  Score=33.21  Aligned_cols=71  Identities=17%  Similarity=0.307  Sum_probs=45.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceee------eeeec---------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC-Ccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLV------RELGT---------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE-TGE   65 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~   65 (85)
                      +.++-++..|.|++-|++.....      .....         .--..|..+.|+++|+++++-+- -++++||+. ..+
T Consensus       227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~  305 (433)
T KOG1354|consen  227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK  305 (433)
T ss_pred             cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC
Confidence            45677778899999998732111      11100         01135788999999999987533 489999995 445


Q ss_pred             cccccccc
Q psy7058          66 VDKEYSGH   73 (85)
Q Consensus        66 ~~~~~~~~   73 (85)
                      ++.+++.|
T Consensus       306 pv~t~~vh  313 (433)
T KOG1354|consen  306 PVETYPVH  313 (433)
T ss_pred             cceEEeeh
Confidence            55555544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.80  E-value=0.012  Score=33.98  Aligned_cols=63  Identities=17%  Similarity=0.300  Sum_probs=45.7

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC---------------eEEEEEcCCcccccccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG---------------VARLWNIETGEVDKEYSGHQK   75 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~~~~~~~   75 (85)
                      ..|.+|+...+..+..+.  + ..+..+.|+|.+++|.+=....               .+.+||+.++..+..+.....
T Consensus        53 ~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q  129 (561)
T COG5354          53 AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ  129 (561)
T ss_pred             cceEEccccchhheeeee--c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCC
Confidence            458888877766555544  2 3488899999999998765332               489999999988777775544


Q ss_pred             c
Q psy7058          76 A   76 (85)
Q Consensus        76 ~   76 (85)
                      +
T Consensus       130 ~  130 (561)
T COG5354         130 P  130 (561)
T ss_pred             c
Confidence            4

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.78  E-value=0.022  Score=29.23  Aligned_cols=65  Identities=15%  Similarity=0.106  Sum_probs=44.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      +.+++++.++.++.||..+++..-+.......... .  ...+..++.+..++.++.+|..+++.+..
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~  101 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P--VVDGGRVYVGTSDGSLYALDAKTGKVLWS  101 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E--EEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e--eecccccccccceeeeEecccCCcceeee
Confidence            56777789999999999999887766642211011 1  11344555555777999999988887766

...

>KOG1409|consensus

Probab=96.68  E-value=0.02  Score=31.69  Aligned_cols=79  Identities=16%  Similarity=0.265  Sum_probs=57.3

Q ss_pred             eEEeeCCCcEEEeeCC-CceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC----Ccccccccccccccee
Q psy7058           4 LATTSADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE----TGEVDKEYSGHQKAIT   78 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~v~   78 (85)
                      +++.+.|.++++|--+ .++....+....+.+...+.++.+...++.+-.++++.-+.+.    ....++.+..|...+.
T Consensus        39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~  118 (404)
T KOG1409|consen   39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVS  118 (404)
T ss_pred             eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhccee
Confidence            6788899999998644 4555555555456778899999898899999999999888653    3445555556766666


Q ss_pred             EEEE
Q psy7058          79 SLAF   82 (85)
Q Consensus        79 ~~~~   82 (85)
                      .+-|
T Consensus       119 ~~if  122 (404)
T KOG1409|consen  119 AIVF  122 (404)
T ss_pred             eEEe
Confidence            5554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.68  E-value=0.041  Score=30.82  Aligned_cols=67  Identities=12%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .+..++.++.+..+|..+++..-..............+  .+..++.++.++.+...|..+++.+....
T Consensus       296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~  362 (394)
T PRK11138        296 RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK  362 (394)
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            44555566666666666665433221100000111111  24566778889999999998888765554

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.66  E-value=0.052  Score=31.77  Aligned_cols=35  Identities=34%  Similarity=0.541  Sum_probs=26.7

Q ss_pred             EEEEEecC----CCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058          35 VWDAAFTL----DSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus        35 ~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      ...+.++.    +..++++.+.|+.+++||+.+++++.+
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            45555555    677899999999999999999887443

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=96.50  E-value=0.047  Score=34.19  Aligned_cols=81  Identities=11%  Similarity=0.165  Sum_probs=48.8

Q ss_pred             CceeEEeeC------CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSA------DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS---DGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~   71 (85)
                      |+++|+.+.      .+.+++|+-. |.....-.. -.+--..++|.|.|.++++...   ...|.+|. ++|.....|.
T Consensus       221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~  297 (928)
T PF04762_consen  221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT  297 (928)
T ss_pred             CcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence            455655543      3578899855 554333222 3333467899999999988754   23455554 4454433332


Q ss_pred             ----ccccceeEEEEeC
Q psy7058          72 ----GHQKAITSLAFCD   84 (85)
Q Consensus        72 ----~~~~~v~~~~~~~   84 (85)
                          .....|..++||.
T Consensus       298 l~~~~~~~~v~~l~Wn~  314 (928)
T PF04762_consen  298 LRFDPEEEKVIELAWNS  314 (928)
T ss_pred             cCCCCCCceeeEEEECC
Confidence                3456888899986

>KOG2444|consensus

Probab=96.49  E-value=0.012  Score=30.65  Aligned_cols=62  Identities=23%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCC-CcEEEEEecCCCCEEEEE--cCCCeEEEEEcCCc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLLTA--SSDGVARLWNIETG   64 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~   64 (85)
                      .+..++..++.++.|++...+.+..... +. .+......+..+..+...  +.+..++.|++..-
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~-h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNKVLGYVGQ-HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ceeEEeccCCceeeeccccCceeeeecc-ccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            3567888999999999887666555444 44 444555555566666666  77778888887543

>KOG1832|consensus

Probab=96.49  E-value=0.011  Score=36.82  Aligned_cols=51  Identities=22%  Similarity=0.357  Sum_probs=44.9

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +....++++|+-+..+++.|...|.|++|++.+|........|+.+|+.+.
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~ve 1150 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVE 1150 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccccccccc
Confidence            455688999999999999999999999999999998888888988887653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.46  E-value=0.013  Score=22.47  Aligned_cols=30  Identities=17%  Similarity=0.208  Sum_probs=24.7

Q ss_pred             cEEEEEecCCC---CEEEEEcCCCeEEEEEcCC
Q psy7058          34 WVWDAAFTLDS---KFLLTASSDGVARLWNIET   63 (85)
Q Consensus        34 ~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~   63 (85)
                      .+.++.|+|+.   .+++..-..+.+.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            47889999844   5788888889999999985

It contains a characteristic DLL sequence motif.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.43  E-value=0.034  Score=30.81  Aligned_cols=58  Identities=16%  Similarity=0.274  Sum_probs=41.4

Q ss_pred             EEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEE-cCCCeEEEEEcCCccccccccc
Q psy7058          13 ARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTA-SSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        13 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      |=++|+.+++.+.++..+  .++.++.++.+.. .|++. ..++.+.+||..+++.+..+.+
T Consensus       271 VWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            556788889998888753  3477899998765 44444 4578999999999998877763

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2444|consensus

Probab=96.43  E-value=0.039  Score=28.92  Aligned_cols=72  Identities=17%  Similarity=0.095  Sum_probs=43.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCc-eeeeeeeccCCCcEEEE-EecCCCCEEEEEcCCCeEEEEEcCCccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF-SLVRELGTANQRWVWDA-AFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      ..++.|..++.+++|..... ........ ....+-++ .--.++.+..+++.++.|+.|++...+.+.....|+
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhc-ccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            45788889999999987622 11111111 11223222 222345677888999999999998777665544444

>KOG1832|consensus

Probab=96.42  E-value=0.0049  Score=38.17  Aligned_cols=61  Identities=25%  Similarity=0.272  Sum_probs=50.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC--CeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD--GVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~   63 (85)
                      ++|+.|+..|.|+++++.+|........ |+..++.+.-+.+|...++.+.-  ....+|++.+
T Consensus      1114 ~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1114 NHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             ceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            5789999999999999999988888877 88889999988899887765432  2567788754

>KOG1354|consensus

Probab=96.37  E-value=0.033  Score=31.02  Aligned_cols=63  Identities=17%  Similarity=0.234  Sum_probs=42.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCcee-eeeeec---cC------------CCcEEEEEecCCC--CEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSL-VRELGT---AN------------QRWVWDAAFTLDS--KFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~-~~~~~~---~~------------~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~   62 (85)
                      |++|++|..+|.+.++.-..... ...+..   .|            ...|+.+.|-+++  ..++....|.+|++|-+.
T Consensus        37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~  116 (433)
T KOG1354|consen   37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR  116 (433)
T ss_pred             cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence            68999999999999886432211 111111   01            2357889998865  457777889999999875


Q ss_pred             C
Q psy7058          63 T   63 (85)
Q Consensus        63 ~   63 (85)
                      .
T Consensus       117 e  117 (433)
T KOG1354|consen  117 E  117 (433)
T ss_pred             c
Confidence            3

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.27  E-value=0.043  Score=32.33  Aligned_cols=59  Identities=15%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      .+++.+++.|.|++||.-.......+++ ....|..+....+|.++++.+.. .+.+-|++
T Consensus       574 GyIa~as~kGDirLyDRig~rAKtalP~-lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGKRAKTALPG-LGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             ceEEEecCCCceeeehhhcchhhhcCcc-cccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            5789999999999999764444444444 56678899999999988776665 45555653

>KOG2041|consensus

Probab=96.24  E-value=0.025  Score=34.49  Aligned_cols=60  Identities=18%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      +.|-++..+|.|.+|-+-.+.-...+.. ...+.+.+++|+.+|+.++..-.||.|.+=.+
T Consensus        84 QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   84 QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            3466778889999998877655443322 24567899999999999998888888766544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.21  E-value=0.12  Score=31.12  Aligned_cols=53  Identities=19%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~   61 (85)
                      ....+.+||.+.+.......-.....|.++.|..  +++.+++.+-.+.|.++.-
T Consensus        49 ~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   49 SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            3457899999987755544433467799999864  7888888888888888853

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.09  E-value=0.097  Score=29.38  Aligned_cols=66  Identities=18%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEE-EEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWD-AAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.++.++.++.++.+|..+++..-+....  ..+.+ ..+  .+..++.+..++.+.-+|..+++.+..+.
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            35667778889999999999887665531  11211 111  23455566778889999998887765543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=95.99  E-value=0.13  Score=29.40  Aligned_cols=54  Identities=15%  Similarity=0.031  Sum_probs=35.1

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEE-EcCC--CeEEEEEcCCcc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT-ASSD--GVARLWNIETGE   65 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~~~~~~~~~   65 (85)
                      +..|+++|+.+++......  .........|+|||+.++. .+.+  ..|.++++..+.
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            3568888988776544332  3344556789999987654 3333  467777876654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.97  E-value=0.097  Score=27.75  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=41.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      ++.|+.|..+| +++++............  ...|..+...++-..++.-+ |+.+.++++....
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~   67 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE   67 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence            46788998888 89999833333333332  23388888888777766654 4899999986543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.96  E-value=0.14  Score=29.40  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=45.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCC----cEEEEEecC-------------C-CCE-EEEEcCCCeEEEEEc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQR----WVWDAAFTL-------------D-SKF-LLTASSDGVARLWNI   61 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~-------------~-~~~-~~~~~~~~~i~~~~~   61 (85)
                      +++.++...-|.|.++|+.++..++..++ +..    .+....-..             + ..+ ++....-|.|.+|++
T Consensus       319 ~~laA~tDslGRV~LiD~~~~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~  397 (415)
T PF14655_consen  319 GRLAAVTDSLGRVLLIDVARGIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSM  397 (415)
T ss_pred             CCEEEEEcCCCcEEEEECCCChhhhhhcc-CccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEec
Confidence            35667777779999999999888777765 321    111111000             0 112 345677899999999


Q ss_pred             CCccccccccc
Q psy7058          62 ETGEVDKEYSG   72 (85)
Q Consensus        62 ~~~~~~~~~~~   72 (85)
                      +.+..+..+..
T Consensus       398 ~~g~Rv~a~~v  408 (415)
T PF14655_consen  398 RQGPRVAAFNV  408 (415)
T ss_pred             CCCCEEEEEEe
Confidence            99987776653

>KOG0882|consensus

Probab=95.91  E-value=0.039  Score=31.77  Aligned_cols=68  Identities=21%  Similarity=0.280  Sum_probs=48.4

Q ss_pred             eEEeeCCCcEEEeeCCC-ceeee-----eeec--------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058           4 LATTSADQTARIWNTED-FSLVR-----ELGT--------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~-~~~~~-----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      .++....|.|..|.... .+.+.     .++.        .......++.++|++..+.+-..|..|++++.++++..+.
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            45566678899998762 11111     1110        1234567899999999999999999999999999987776


Q ss_pred             cc
Q psy7058          70 YS   71 (85)
Q Consensus        70 ~~   71 (85)
                      +.
T Consensus       239 iD  240 (558)
T KOG0882|consen  239 ID  240 (558)
T ss_pred             hh
Confidence            65

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.14  Score=28.51  Aligned_cols=85  Identities=13%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             CceeEEeeCC-CcEEEeeCCC-ceeeeeeec-cCC----------CcEEEEEecCCCCEEEEEcCC-CeEEEEEcCCccc
Q psy7058           1 MGLLATTSAD-QTARIWNTED-FSLVRELGT-ANQ----------RWVWDAAFTLDSKFLLTASSD-GVARLWNIETGEV   66 (85)
Q Consensus         1 g~~l~~~~~~-~~i~~~d~~~-~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~   66 (85)
                      |++|+++... +.|.++-++. +........ .|.          ..+....+.|+++++++.+.. -.|.+|++.+++.
T Consensus       100 g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L  179 (346)
T COG2706         100 GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL  179 (346)
T ss_pred             CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcc
Confidence            3566666644 6788887754 322111110 021          227788899999999887653 4789999987753


Q ss_pred             ccccc---ccccceeEEEEeCC
Q psy7058          67 DKEYS---GHQKAITSLAFCDF   85 (85)
Q Consensus        67 ~~~~~---~~~~~v~~~~~~~~   85 (85)
                      ...-.   .....-+.|.|+|+
T Consensus       180 ~~~~~~~v~~G~GPRHi~FHpn  201 (346)
T COG2706         180 TPADPAEVKPGAGPRHIVFHPN  201 (346)
T ss_pred             ccccccccCCCCCcceEEEcCC
Confidence            32111   23456677888774

>KOG0309|consensus

Probab=95.81  E-value=0.0093  Score=36.20  Aligned_cols=60  Identities=17%  Similarity=0.296  Sum_probs=44.1

Q ss_pred             eEEeeCCCcEEEeeCCCceee-eeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCc
Q psy7058           4 LATTSADQTARIWNTEDFSLV-RELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      +.+.+....+.+||.+.+..+ ..+++ +...++.+.|+. ....+.+.+.|+++++|+....
T Consensus       173 vlasshg~~i~vwd~r~gs~pl~s~K~-~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTPLCSLKG-HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcceEEecc-cceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            345566678999999977554 44454 777788888876 3456778889999999997644

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.75  E-value=0.26  Score=31.18  Aligned_cols=56  Identities=14%  Similarity=0.151  Sum_probs=38.2

Q ss_pred             eeEEeeCCCcEEEe----eCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEE
Q psy7058           3 LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN   60 (85)
Q Consensus         3 ~l~~~~~~~~i~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (85)
                      .++.+..+|.|.+.    +..+..  ....+.-...|.+++||||+..++..+.++.+.+..
T Consensus        89 ~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   89 SLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             cEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            46667778888887    433222  122222345699999999999999888888776654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.75  E-value=0.15  Score=28.23  Aligned_cols=61  Identities=16%  Similarity=0.366  Sum_probs=39.1

Q ss_pred             CceeEEee-CCCcEEEeeCC--Cce--eeeeeeccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEcC
Q psy7058           1 MGLLATTS-ADQTARIWNTE--DFS--LVRELGTANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~-~~~~i~~~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~   62 (85)
                      |++|.++. .+..|.+|++.  +++  .+..+.. .......+.++|+|++++.+. .++.|.+|++.
T Consensus       256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            35555444 45678999983  233  2333333 334478899999999988776 46789999774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=95.69  E-value=0.15  Score=27.98  Aligned_cols=79  Identities=18%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             eEEeeCCC-cEEEeeCCCceeeeeeeccCCCcE-EEEEecCCCCEEEEEc-----CCCeEEEEEcC-Ccccccccccccc
Q psy7058           4 LATTSADQ-TARIWNTEDFSLVRELGTANQRWV-WDAAFTLDSKFLLTAS-----SDGVARLWNIE-TGEVDKEYSGHQK   75 (85)
Q Consensus         4 l~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~i~~~~~~-~~~~~~~~~~~~~   75 (85)
                      ++.+.+-+ ...+||..+++....+........ =.-.|++||+++++.-     ..|.|-+||.. .-+.+.++..+.-
T Consensus        20 vafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI   99 (305)
T PF07433_consen   20 VAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI   99 (305)
T ss_pred             EEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc
Confidence            44444444 467899999988877665222112 2467899999998753     35789999998 4455566665543


Q ss_pred             ceeEEEE
Q psy7058          76 AITSLAF   82 (85)
Q Consensus        76 ~v~~~~~   82 (85)
                      .-..+.+
T Consensus       100 GPHel~l  106 (305)
T PF07433_consen  100 GPHELLL  106 (305)
T ss_pred             ChhhEEE
Confidence            3334433

>KOG4640|consensus

Probab=95.60  E-value=0.054  Score=32.31  Aligned_cols=53  Identities=9%  Similarity=-0.002  Sum_probs=43.5

Q ss_pred             CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee-EEEEeCC
Q psy7058          32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT-SLAFCDF   85 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~   85 (85)
                      ...+..+.|+|....+|++..+|.+.+..+. .+.+.++..+...++ +++|.|.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~D   73 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPD   73 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCC
Confidence            4558899999999999999999999888887 667777776666676 8888763

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=95.40  E-value=0.4  Score=30.85  Aligned_cols=62  Identities=15%  Similarity=0.113  Sum_probs=39.7

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeecc--------------CCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCcc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTA--------------NQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGE   65 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~   65 (85)
                      .+++...++.|++||..++.... +.+.              .-.....++++|++..+ ++-..++.|++||+.++.
T Consensus       697 LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~  773 (1057)
T PLN02919        697 VYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG  773 (1057)
T ss_pred             EEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence            45566677889999987654321 1100              01234578999998854 455567899999987653

>KOG4499|consensus

Probab=95.39  E-value=0.18  Score=26.94  Aligned_cols=46  Identities=17%  Similarity=0.193  Sum_probs=37.3

Q ss_pred             EEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058          38 AAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      ++...+|.+.++.=..++|..+|..+++.+.++.-....|++++|-
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            4445577777777677899999999999999888778899999883

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.33  E-value=0.25  Score=28.15  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc-------CCCcEEEEEec-----CCC---CEEEEEcCCCeEEEEEcC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA-------NQRWVWDAAFT-----LDS---KFLLTASSDGVARLWNIE   62 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~---~~~~~~~~~~~i~~~~~~   62 (85)
                      .+++.|..+|.+.+.|++....+..-...       ....+.++.|+     .|+   -.++.|...|.+.+|.+.
T Consensus        98 GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen   98 GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence            47899999999999999988776653321       23456677665     233   356778888999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.28  E-value=0.093  Score=29.09  Aligned_cols=52  Identities=19%  Similarity=0.222  Sum_probs=37.0

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      +...++|+.+++.......  ...+....|+|+|+.++.. .++.|.+.+...+.
T Consensus        23 ~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~   74 (353)
T PF00930_consen   23 GDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQ   74 (353)
T ss_dssp             EEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSE
T ss_pred             eeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEE-ecCceEEEECCCCC
Confidence            4678899988665444332  4457889999999998887 45689999876553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.26  E-value=0.26  Score=28.33  Aligned_cols=41  Identities=17%  Similarity=0.196  Sum_probs=33.6

Q ss_pred             CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058          32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      ...+.++..+|++++.++.+.-|.|.++|+..+..++.+++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG  347 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG  347 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence            34578899999999999888889999999988876665553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=95.19  E-value=0.25  Score=27.36  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             CceeEEee-CCCcEEEeeCCC-ceeeee---ee---------ccCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCcc
Q psy7058           1 MGLLATTS-ADQTARIWNTED-FSLVRE---LG---------TANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~-~~~~i~~~d~~~-~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~   65 (85)
                      +++|+++. .++.+.++++.. +.....   ..         .........+.++|++++++..+. ...|.+|++....
T Consensus        98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen   98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            35566666 478899999875 333222   11         012345788999999998877654 3489999987554


Q ss_pred             c-c---cccc-ccccceeEEEEeC
Q psy7058          66 V-D---KEYS-GHQKAITSLAFCD   84 (85)
Q Consensus        66 ~-~---~~~~-~~~~~v~~~~~~~   84 (85)
                      . +   ..+. .....-+.+.|+|
T Consensus       178 ~~l~~~~~~~~~~G~GPRh~~f~p  201 (345)
T PF10282_consen  178 GKLTPVDSIKVPPGSGPRHLAFSP  201 (345)
T ss_dssp             -TEEEEEEEECSTTSSEEEEEE-T
T ss_pred             ceEEEeeccccccCCCCcEEEEcC
Confidence            1 1   1111 2334556777766

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1008|consensus

Probab=95.13  E-value=0.0077  Score=35.81  Aligned_cols=79  Identities=14%  Similarity=0.285  Sum_probs=48.0

Q ss_pred             eeEEeeCCCcEEEeeCCCcee-eeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEE-cCCc-ccccccccccc---
Q psy7058           3 LLATTSADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWN-IETG-EVDKEYSGHQK---   75 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~~-~~~~~~~~~~~---   75 (85)
                      ++++|.....+.++|++-... ...+.   ...+..+.+.| .+.++++.. ++.+.+|| .++- ++++.+...+.   
T Consensus       168 lvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~  243 (783)
T KOG1008|consen  168 LVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKP  243 (783)
T ss_pred             hhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcc
Confidence            456666667788888772221 12221   23456677888 777777765 89999999 3332 34444443333   


Q ss_pred             -ceeEEEEeCC
Q psy7058          76 -AITSLAFCDF   85 (85)
Q Consensus        76 -~v~~~~~~~~   85 (85)
                       .+..++|.|.
T Consensus       244 ~~l~~~aycPt  254 (783)
T KOG1008|consen  244 KQLFALAYCPT  254 (783)
T ss_pred             cceeeEEeccC
Confidence             3788888773

>KOG0882|consensus

Probab=95.05  E-value=0.0089  Score=34.15  Aligned_cols=62  Identities=13%  Similarity=0.257  Sum_probs=46.1

Q ss_pred             ceeEEeeCCCcEEEeeCCC--cee-eeeeeccCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCc
Q psy7058           2 GLLATTSADQTARIWNTED--FSL-VRELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETG   64 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~   64 (85)
                      +++++++.|+.++.|.-..  +.. +..+.. |-..+.+++.+.++..+.+.+. |+.++++|+.+-
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            4678999999999998543  211 222222 6677888999999999999777 999999988643

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.87  E-value=0.09  Score=30.85  Aligned_cols=26  Identities=35%  Similarity=0.464  Sum_probs=22.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeee
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVREL   27 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~   27 (85)
                      .++++-+.|+.+++||+.+++.+...
T Consensus       231 ~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  231 TFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             TEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            46789999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.87  E-value=0.1  Score=27.17  Aligned_cols=28  Identities=25%  Similarity=0.649  Sum_probs=23.1

Q ss_pred             ecCCCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058          40 FTLDSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus        40 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      +..++.++...+.+|.+++||+.+.+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            3447888999999999999999887643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.81  E-value=0.12  Score=28.65  Aligned_cols=68  Identities=13%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             eeEEeeCCCcEEEeeCCCcee------eeee--ec-------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-c
Q psy7058           3 LLATTSADQTARIWNTEDFSL------VREL--GT-------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-V   66 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~------~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~   66 (85)
                      .+.-++..|.|++-|++....      ....  .+       .-...|..+.|++.|+++++-+. -++.+||++..+ +
T Consensus       236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p  314 (460)
T COG5170         236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP  314 (460)
T ss_pred             eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence            344566678899988873211      1111  11       11245788999999999887543 489999998653 4


Q ss_pred             ccccc
Q psy7058          67 DKEYS   71 (85)
Q Consensus        67 ~~~~~   71 (85)
                      +.++.
T Consensus       315 ikTi~  319 (460)
T COG5170         315 IKTIP  319 (460)
T ss_pred             ceeec
Confidence            44443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.77  E-value=0.57  Score=29.29  Aligned_cols=78  Identities=18%  Similarity=0.142  Sum_probs=48.7

Q ss_pred             eEEeeCCCcEEEeeCCCce--eeee-eec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc-ccccccccee
Q psy7058           4 LATTSADQTARIWNTEDFS--LVRE-LGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK-EYSGHQKAIT   78 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~--~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~v~   78 (85)
                      -+.|-.+..+..||.+-..  .+.. ... .......|++-..+| +++.|+.+|.||+||- .++..+ .+++-..+|.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCee
Confidence            3556677889999988432  2211 111 123346666655555 6788999999999994 333333 3556678888


Q ss_pred             EEEEe
Q psy7058          79 SLAFC   83 (85)
Q Consensus        79 ~~~~~   83 (85)
                      .+..+
T Consensus       623 ~iDvt  627 (794)
T PF08553_consen  623 GIDVT  627 (794)
T ss_pred             EEEec
Confidence            77654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920|consensus

Probab=94.72  E-value=0.37  Score=31.25  Aligned_cols=71  Identities=13%  Similarity=0.171  Sum_probs=41.8

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc---CCCeEEEEEcCCccc----cccccccccceeEEEEe
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS---SDGVARLWNIETGEV----DKEYSGHQKAITSLAFC   83 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~----~~~~~~~~~~v~~~~~~   83 (85)
                      ..+++||.. +..-..-.. ....-.++.|-|.|..+++-.   .+..|.+|.-+ |..    ...++....++..++|+
T Consensus       222 RkirV~drE-g~Lns~se~-~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNSTSEP-VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             eeEEEeccc-chhhcccCc-ccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeec
Confidence            789999976 333221111 223346789999999988753   34568777643 322    22333344457778886


Q ss_pred             C
Q psy7058          84 D   84 (85)
Q Consensus        84 ~   84 (85)
                      .
T Consensus       299 s  299 (1265)
T KOG1920|consen  299 S  299 (1265)
T ss_pred             C
Confidence            4

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.72  E-value=0.53  Score=28.63  Aligned_cols=54  Identities=7%  Similarity=0.123  Sum_probs=39.6

Q ss_pred             CCcEEEeeCCC-----ceeeeeeeccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEcCCcc
Q psy7058          10 DQTARIWNTED-----FSLVRELGTANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNIETGE   65 (85)
Q Consensus        10 ~~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~   65 (85)
                      ++.+.+.|..+     .+....+..  ......+.++|||++++..+ .+..+.+.|+.+.+
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            46788999887     344444443  33467899999999877554 58899999997754

>KOG2079|consensus

Probab=94.69  E-value=0.45  Score=30.67  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=38.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCC---CcEEEEEecCCCCEEEEEcCCCe
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQ---RWVWDAAFTLDSKFLLTASSDGV   55 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   55 (85)
                      |..++.|-.+|.|.+||+..++....+.. +.   ..+..+.+..+++.+++++..|.
T Consensus       142 g~~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  142 GSLLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             CceeccccCCCcEEEEEccCCcceeeeee-cCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            46788888999999999998877776654 22   23444555556667777777775

>KOG3617|consensus

Probab=94.59  E-value=0.032  Score=34.76  Aligned_cols=74  Identities=14%  Similarity=0.115  Sum_probs=50.8

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      +.|.+.+|- .+|++...+.  ++-.+.+++|+|..-.++.+=.-|.+.+|.....+....-..|..+|.-+.|||.
T Consensus        39 r~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~  112 (1416)
T KOG3617|consen   39 RGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD  112 (1416)
T ss_pred             CCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC
Confidence            344555542 3444333222  3334678999999888888888899999998766655555568889999999874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.53  E-value=0.47  Score=27.19  Aligned_cols=51  Identities=16%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc-ccceeEEEEe
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH-QKAITSLAFC   83 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~   83 (85)
                      +++..+++||++++++....+|.+.+....-.+.+..+... ......|.|.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC  268 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC  268 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence            56999999999999999989999988876555544444433 2344555553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008|consensus

Probab=94.49  E-value=0.012  Score=35.12  Aligned_cols=56  Identities=11%  Similarity=0.310  Sum_probs=39.7

Q ss_pred             CCCcEEEeeCCCc--eeeee--eeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           9 ADQTARIWNTEDF--SLVRE--LGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         9 ~~~~i~~~d~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      .|..+.+||..+.  .+...  +........++++|-.+.+.+.+|...+.+.++|++..
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs  186 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS  186 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence            4567999999876  22221  22213344678899888889999999999999999843

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.36  E-value=0.11  Score=19.13  Aligned_cols=31  Identities=13%  Similarity=0.083  Sum_probs=21.4

Q ss_pred             CCCCEEEEEc-CCCeEEEEEcCCccccccccc
Q psy7058          42 LDSKFLLTAS-SDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        42 ~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      |+++.++.+. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4566555544 577899999988777666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=94.35  E-value=0.36  Score=28.47  Aligned_cols=73  Identities=11%  Similarity=0.180  Sum_probs=44.2

Q ss_pred             CcEEEeeCCCceeeeeeeccCCC--cEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc-cccceeEEEEeC
Q psy7058          11 QTARIWNTEDFSLVRELGTANQR--WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAITSLAFCD   84 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~   84 (85)
                      ..+.+||..++..+..+......  ...-+.|+-+..+++-. -...+.|+++........+.. ....+...+|+|
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecC
Confidence            36899999999998887762222  22367788888777655 344788888622211111211 124566666665

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.05  E-value=0.43  Score=24.98  Aligned_cols=48  Identities=13%  Similarity=0.227  Sum_probs=33.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCc--eeeeeeeccCCCcEEEEEecCCCCEEEEEc
Q psy7058           2 GLLATTSADQTARIWNTEDF--SLVRELGTANQRWVWDAAFTLDSKFLLTAS   51 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   51 (85)
                      +.|..+.....|.+|++...  +...++.  .-+.+..+..+..|+++++--
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEE
Confidence            34555566678999998832  3344444  346789999999999999864

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.01  E-value=0.61  Score=27.30  Aligned_cols=69  Identities=14%  Similarity=0.096  Sum_probs=44.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCC-----CcEE--EEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQ-----RWVW--DAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+..++.++.++-.|..+++..-+......     ..+.  .+... ++..++.++.++.+.-+|.++++.+..+.
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            4566777789999999998887665543111     0000  01111 22567777888999999999888776554

The alignment model contains an 8-bladed beta-propeller.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=93.91  E-value=0.48  Score=26.47  Aligned_cols=31  Identities=32%  Similarity=0.501  Sum_probs=21.9

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |...++++.++.|...++++ .+-.|.+|++.
T Consensus       171 H~yhiNSiS~NsD~et~lSa-DdLrINLWnl~  201 (460)
T COG5170         171 HPYHINSISFNSDKETLLSA-DDLRINLWNLE  201 (460)
T ss_pred             ceeEeeeeeecCchheeeec-cceeeeecccc
Confidence            45568889998888777765 45567777653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.76  E-value=0.76  Score=26.77  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=24.1

Q ss_pred             CCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          44 SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        44 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      |..++..+.+ .|.+||+.+++.+..+...  +|..+.|++
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~  154 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD  154 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence            6666665444 8999999999988888643  478888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.63  E-value=0.66  Score=25.66  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             CCcEEEeeCC-CceeeeeeeccCCCcEEEEEecCCCCEEEEEc------------------CCCeEEEEEcCCcccccc-
Q psy7058          10 DQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKFLLTAS------------------SDGVARLWNIETGEVDKE-   69 (85)
Q Consensus        10 ~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~-   69 (85)
                      .|.|-|||+. +-..+..+.. +.-.-..+.+.||+..++.+.                  .+..+.+.|..+++.+.+ 
T Consensus        76 ~G~IgVyd~~~~~~ri~E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~  154 (305)
T PF07433_consen   76 RGVIGVYDAARGYRRIGEFPS-HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV  154 (305)
T ss_pred             cEEEEEEECcCCcEEEeEecC-CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence            4678899998 4455556554 333345677889996665542                  122455566677776654 


Q ss_pred             -c--cccccceeEEEEeC
Q psy7058          70 -Y--SGHQKAITSLAFCD   84 (85)
Q Consensus        70 -~--~~~~~~v~~~~~~~   84 (85)
                       +  .-|...|+.+++++
T Consensus       155 ~Lp~~~~~lSiRHLa~~~  172 (305)
T PF07433_consen  155 ELPPDLHQLSIRHLAVDG  172 (305)
T ss_pred             ecCccccccceeeEEecC
Confidence             4  23666788887754

>smart00564 PQQ beta-propeller repeat

Probab=93.61  E-value=0.14  Score=17.79  Aligned_cols=24  Identities=13%  Similarity=0.052  Sum_probs=18.4

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeee
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRE   26 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~   26 (85)
                      .+..++.++.+..+|..+++..-.
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            577788888999999888776543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.58  E-value=0.47  Score=28.14  Aligned_cols=60  Identities=12%  Similarity=0.153  Sum_probs=39.7

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      +.+.-+|+.+++..-+...... ..... +.-.+..++.++.++.++.+|.++++.+..++.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            5677888888877665543211 01111 112455677788899999999999998877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=93.50  E-value=0.33  Score=21.74  Aligned_cols=42  Identities=14%  Similarity=0.091  Sum_probs=26.8

Q ss_pred             eeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEE
Q psy7058           7 TSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA   50 (85)
Q Consensus         7 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   50 (85)
                      +..+|.+.-||..+++....+.+  -...+.+++++|+++++.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEE
Confidence            34567788888887766555544  2246899999999976654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.10  E-value=0.68  Score=24.25  Aligned_cols=78  Identities=14%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             EEeeCCCcEEEeeCCCce--e--eeeeec-c-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           5 ATTSADQTARIWNTEDFS--L--VRELGT-A-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~--~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      ++-+..+.|..++.....  .  ...+.. . .....-.+++..+|.+.++.-..+.|.+++.. ++.+..+......++
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t  228 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPT  228 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEE
T ss_pred             ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEE
Confidence            455566677777764221  1  111211 1 11236778999999988887788899999987 777776665555788


Q ss_pred             EEEEe
Q psy7058          79 SLAFC   83 (85)
Q Consensus        79 ~~~~~   83 (85)
                      +++|.
T Consensus       229 ~~~fg  233 (246)
T PF08450_consen  229 NCAFG  233 (246)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88884

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3630|consensus

Probab=92.98  E-value=0.45  Score=30.97  Aligned_cols=30  Identities=10%  Similarity=0.095  Sum_probs=25.9

Q ss_pred             CCcEEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058          32 QRWVWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      ....++++|+|.|..++.|..+|++.-|..
T Consensus       198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             ccceeeEEeccccceeeEecCCCeEEEeec
Confidence            345789999999999999999999887764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=92.69  E-value=1  Score=25.33  Aligned_cols=62  Identities=8%  Similarity=0.071  Sum_probs=41.7

Q ss_pred             ceeEEeeCC-CcEEEeeCCCceeeeeee--ccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEcCC
Q psy7058           2 GLLATTSAD-QTARIWNTEDFSLVRELG--TANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~-~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~   63 (85)
                      ++|++.... -.+.+|++..+.......  ......-..+.|+|++++....+ .+++|.+|....
T Consensus       157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence            456666543 368888888665433221  12334468899999999987655 588999998876

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.67  E-value=1.1  Score=25.66  Aligned_cols=67  Identities=13%  Similarity=0.114  Sum_probs=36.2

Q ss_pred             eeEEeeCCC--cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           3 LLATTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         3 ~l~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      +|..+..++  .+++.|+.+++..+....... ......++++.+.++.......++-.|+.+.+....+
T Consensus        50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGD-NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             EEEEE-TTSS-EEEEEETTT-EEEE---SS-B--TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             EEEEeccCCCcceEEEEcccCEEEECccCCCC-CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            344555454  577888898887776654221 1224566787787776666678888888877644333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.50  E-value=1.6  Score=27.14  Aligned_cols=33  Identities=18%  Similarity=0.202  Sum_probs=27.8

Q ss_pred             CCcEEEEEecCC---CCEEEEEcCCCeEEEEEcCCc
Q psy7058          32 QRWVWDAAFTLD---SKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus        32 ~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      ...|..+.|+|.   +..++.-..|+.+|+||+...
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            346889999996   578999999999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=92.24  E-value=0.3  Score=17.98  Aligned_cols=18  Identities=11%  Similarity=0.139  Sum_probs=12.8

Q ss_pred             ceeEEeeCCCcEEEeeCC
Q psy7058           2 GLLATTSADQTARIWNTE   19 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~   19 (85)
                      ..+..++.|+.++.+|..
T Consensus        22 g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   22 GRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             SEEEEE-TTSEEEEEETT
T ss_pred             CEEEEEcCCCEEEEEeCC
Confidence            467777788888888765

>KOG2377|consensus

Probab=92.14  E-value=1.6  Score=26.00  Aligned_cols=54  Identities=15%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc----cccccccceeEEEEeC
Q psy7058          31 NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK----EYSGHQKAITSLAFCD   84 (85)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~v~~~~~~~   84 (85)
                      ..++|.++.|++|.+.++.--.++.|.+++....+...    +.+.....|....|+.
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~  122 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS  122 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec
Confidence            45689999999999999999999999999985433322    2223344566666653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.05  E-value=1.6  Score=26.04  Aligned_cols=69  Identities=12%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC---CCCEEEEEc------CCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL---DSKFLLTAS------SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ..++.+..++.+.-.|..+++.+-.........-..+.-+|   ++. ++.+.      .++.|.-+|..+++.+..+.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            45677788889999999999887655431110000111112   343 33332      26789999999888776544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4460|consensus

Probab=91.87  E-value=1.8  Score=26.20  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=26.0

Q ss_pred             cEEEEEecCCC---CEEEEEcCCCeEEEEEcCCcccc
Q psy7058          34 WVWDAAFTLDS---KFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus        34 ~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      .+..++|+|+.   ..+.....|..+++|+......+
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence            35567899965   67888889999999998765443

>PF01011 PQQ: PQQ enzyme repeat family

Probab=91.66  E-value=0.36  Score=17.65  Aligned_cols=27  Identities=7%  Similarity=0.015  Sum_probs=22.2

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeec
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGT   29 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~   29 (85)
                      .+..+..++.++-.|..+++..-+...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456668999999999999998877765

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.49  E-value=1.4  Score=24.27  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCc----EEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRW----VWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      |++|+++..-..|.+.|..+++.+-.+.+.....    -....+-.+.+++-....++.|.+||=
T Consensus       155 G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN  219 (299)
T PF14269_consen  155 GDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN  219 (299)
T ss_pred             ccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence            5788888888899999988988888776531111    111333334444444456667777764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.47  E-value=1.4  Score=24.00  Aligned_cols=62  Identities=13%  Similarity=0.122  Sum_probs=39.5

Q ss_pred             EeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         6 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      -.-.++...+||..+.+...++.-  ...=+.++  .++..+...+....++++|..+.+....+.
T Consensus       105 LTWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             EEecCCeEEEEccccceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence            344677888999998888887764  33345665  367777777777899999987665544443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2247|consensus

Probab=91.39  E-value=0.069  Score=31.24  Aligned_cols=79  Identities=14%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      +.+...+.+++||+.+..... +..+....-.-..|++....++.+.-.+.+.+++....+.....-.|...+.++++.+
T Consensus        91 vlAek~~piylwd~n~eytqq-LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQ-LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHH-HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            344556778999987543322 2111111122367888888888888889999999877666555555777777777754

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.35  E-value=1.2  Score=25.82  Aligned_cols=53  Identities=17%  Similarity=0.041  Sum_probs=33.5

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEE-EcCCCe--EEEEEcCCcc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLT-ASSDGV--ARLWNIETGE   65 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--i~~~~~~~~~   65 (85)
                      ..++++|+.+++......  .......-.|+|||+.++. ...++.  |+++|+...+
T Consensus       218 ~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~  273 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN  273 (425)
T ss_pred             ceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence            357777887776655544  2333455679999988764 445554  6666776554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=90.87  E-value=1.4  Score=23.10  Aligned_cols=79  Identities=14%  Similarity=0.085  Sum_probs=41.6

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeec---c-CCCcEEEEEecCCCCEEEEEcCC--------CeEEEEEcCCccccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGT---A-NQRWVWDAAFTLDSKFLLTASSD--------GVARLWNIETGEVDKEY   70 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~   70 (85)
                      .++.+..++ +.++|..+++.......   . .....+.+.+.++|.+.++....        +.+..++.. ++... .
T Consensus        53 ~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~  129 (246)
T PF08450_consen   53 RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-V  129 (246)
T ss_dssp             EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-E
T ss_pred             EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-E
Confidence            344444444 45558887755433332   1 23467899999999977765433        446666655 33222 2


Q ss_pred             cccccceeEEEEeC
Q psy7058          71 SGHQKAITSLAFCD   84 (85)
Q Consensus        71 ~~~~~~v~~~~~~~   84 (85)
                      ...-...+.++|+|
T Consensus       130 ~~~~~~pNGi~~s~  143 (246)
T PF08450_consen  130 ADGLGFPNGIAFSP  143 (246)
T ss_dssp             EEEESSEEEEEEET
T ss_pred             ecCcccccceEECC
Confidence            22234445666665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.77  E-value=2.2  Score=25.14  Aligned_cols=29  Identities=17%  Similarity=0.118  Sum_probs=24.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT   29 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~   29 (85)
                      ++.|+.++.|+.++.+|..+++.+-+...
T Consensus       406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         406 GNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            35678888999999999999998877665

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.66  E-value=2  Score=24.36  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=39.3

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc----------CCCeEEEEEcCCccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS----------SDGVARLWNIETGEVDK   68 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~   68 (85)
                      +.++++|..+++....+..+..   -.+.++|+++.+++..          ..-.|.+||..+..+..
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~   81 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG   81 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence            4789999999888888776443   3366789999887643          23479999998775444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4499|consensus

Probab=90.39  E-value=1.8  Score=23.48  Aligned_cols=41  Identities=12%  Similarity=0.011  Sum_probs=33.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL   42 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   42 (85)
                      |++.+++-+.+++...|..+++.+..+.. ....+++.+|..
T Consensus       223 G~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt~qitsccFgG  263 (310)
T KOG4499|consen  223 GNLYVATFNGGTVQKVDPTTGKILLEIKL-PTPQITSCCFGG  263 (310)
T ss_pred             CcEEEEEecCcEEEEECCCCCcEEEEEEc-CCCceEEEEecC
Confidence            56778888889999999999999998887 356689999864

>KOG4649|consensus

Probab=90.29  E-value=1.9  Score=23.72  Aligned_cols=65  Identities=14%  Similarity=0.073  Sum_probs=42.8

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      +++.|+..+.+.--|..+++..-+...  ...+.+-+.. -|.+++.|+.++.+++.+.+++.....+
T Consensus        25 ~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f   89 (354)
T KOG4649|consen   25 LVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNF   89 (354)
T ss_pred             EEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeee
Confidence            466777777777778777766544322  1223222211 4788999999999999999988655444

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=90.27  E-value=0.43  Score=16.21  Aligned_cols=24  Identities=13%  Similarity=0.241  Sum_probs=13.6

Q ss_pred             EEEEecCCCCEEEEEcCCCeEEEE
Q psy7058          36 WDAAFTLDSKFLLTASSDGVARLW   59 (85)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~i~~~   59 (85)
                      ..+++.++|..+++=..++.|.+|
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEEC
Confidence            455666666666555555555543

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=90.26  E-value=2.4  Score=24.72  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=33.1

Q ss_pred             EEeeCCCc--EEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEE-cCCCeEEE--EEcCC
Q psy7058           5 ATTSADQT--ARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA-SSDGVARL--WNIET   63 (85)
Q Consensus         5 ~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~--~~~~~   63 (85)
                      .+..+|+.  |++.|+.+.+... +.. ..+.-..-.|+|+|+.++.. +..|.-.|  ++...
T Consensus       254 f~~~rdg~~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g  315 (425)
T COG0823         254 FSSSRDGSPDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG  315 (425)
T ss_pred             EEECCCCCccEEEEcCCCCccee-ccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence            45555554  7777888776444 332 22223366799999987654 44555444  44443

>KOG2114|consensus

Probab=89.88  E-value=3.7  Score=26.29  Aligned_cols=82  Identities=11%  Similarity=0.115  Sum_probs=50.2

Q ss_pred             eeEEeeCCCcEEEeeCC---CceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc-ccccccccccee
Q psy7058           3 LLATTSADQTARIWNTE---DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV-DKEYSGHQKAIT   78 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~v~   78 (85)
                      .++.|-.+|.|..+.-.   .......+......+|+.+.+..++..++.+.....|..|.+....+ ...+..++..++
T Consensus       139 ~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~ln  218 (933)
T KOG2114|consen  139 TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLN  218 (933)
T ss_pred             EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccce
Confidence            46777788888776532   11111222222456899999988887744444556788888873222 334666677777


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      |.++++
T Consensus       219 Css~~~  224 (933)
T KOG2114|consen  219 CSSFSD  224 (933)
T ss_pred             eeecCC
Confidence            777664

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=89.65  E-value=2.2  Score=23.46  Aligned_cols=62  Identities=15%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             CceeEEeeCCCcEEEeeCCC-ceeeeee-eccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTED-FSLVREL-GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      +++++.|.....+.++.... ......+ .......+.++.+-+++..++.++.++.+.++...
T Consensus       139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            35677887777777663332 2212222 22234557788777666788899999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1920|consensus

Probab=89.64  E-value=4.5  Score=26.95  Aligned_cols=57  Identities=11%  Similarity=0.081  Sum_probs=38.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN   60 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (85)
                      +.++.+..+|.|.+-|..+....  +.+.-...|.+++|+||+..++..+...++.+-+
T Consensus        81 ~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   81 NSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             ceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            34566777788887776554322  2222345699999999999998887777766543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.85  E-value=1.7  Score=21.16  Aligned_cols=76  Identities=12%  Similarity=0.046  Sum_probs=43.7

Q ss_pred             eeEEeeCCCcEEEeeCCCce--------eeeeeeccCCCcEEEEEecC-----CCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058           3 LLATTSADQTARIWNTEDFS--------LVRELGTANQRWVWDAAFTL-----DSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      -|+.+...++|.+++.....        .+..+.  -+..+.+++-.+     +...++.| ....+..||+.+..-+..
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~N~d~Fy   88 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVENNSDLFY   88 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcccCchhhh
Confidence            36777788999999865322        222333  234466665433     23445555 555888899976654433


Q ss_pred             ccccccceeEEEE
Q psy7058          70 YSGHQKAITSLAF   82 (85)
Q Consensus        70 ~~~~~~~v~~~~~   82 (85)
                      .. -.+.++++.+
T Consensus        89 ke-~~DGvn~i~~  100 (136)
T PF14781_consen   89 KE-VPDGVNAIVI  100 (136)
T ss_pred             hh-CccceeEEEE
Confidence            22 3456666654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.55  E-value=3.1  Score=23.72  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=24.3

Q ss_pred             EEEEEecCCCCEEEEE-cCC----CeEEEEEcCCcccc
Q psy7058          35 VWDAAFTLDSKFLLTA-SSD----GVARLWNIETGEVD   67 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~-~~~----~~i~~~~~~~~~~~   67 (85)
                      +....++|++++++.+ +..    ..++++|+.+++.+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l  163 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFL  163 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCc
Confidence            3467889999988754 333    36999999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=88.49  E-value=2.9  Score=23.28  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=22.1

Q ss_pred             CcEEEEEecCCCCEEEEEcC-CCeEEEEEcC
Q psy7058          33 RWVWDAAFTLDSKFLLTASS-DGVARLWNIE   62 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~   62 (85)
                      ..-+.++|+||++.+..... .+.|.-|++.
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            34578999999987776654 4677777764

>KOG1916|consensus

Probab=88.48  E-value=1  Score=28.90  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             EecCCCCEEEEEcCCCeEEEEEcC
Q psy7058          39 AFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus        39 ~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      .++|||..+++.+.||.+++|.+.
T Consensus       242 ~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  242 SLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             eeCCCCcEEEEeecCCccceeeee
Confidence            479999999999999999999874

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=87.93  E-value=3.7  Score=23.79  Aligned_cols=48  Identities=19%  Similarity=0.309  Sum_probs=33.7

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      .|.+|+.. |+.+.++.-.. +.+.++.|..+. .++....+|.+++||+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            37777755 55555554423 679999998754 45566799999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395|consensus

Probab=87.88  E-value=4.4  Score=24.65  Aligned_cols=77  Identities=13%  Similarity=0.075  Sum_probs=42.1

Q ss_pred             EEeeCCCcEEEeeCCCc-e-eeeeeec-cC--CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           5 ATTSADQTARIWNTEDF-S-LVRELGT-AN--QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~-~-~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +.|-.+..+.-||.+-. + .+.-... .+  ....+|.+-..+| +++.|+.+|-|++||--.-+.--.+++-.++|..
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~h  476 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKH  476 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceee
Confidence            34556677777887621 1 1111111 01  1223444433344 6788899999999997322322346666777766


Q ss_pred             EEE
Q psy7058          80 LAF   82 (85)
Q Consensus        80 ~~~   82 (85)
                      +..
T Consensus       477 Vdv  479 (644)
T KOG2395|consen  477 VDV  479 (644)
T ss_pred             EEe
Confidence            543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=87.74  E-value=3.8  Score=23.71  Aligned_cols=64  Identities=11%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             eeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEec-----CCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           7 TSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-----LDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         7 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ...+..++++...+.+...+... .......+.+.     ..+..++....+|.+++|.++..+.+..+.
T Consensus       231 vvSe~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  231 VVSESDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             EE-SSEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             EEcccceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            33467799999887776665542 32223333442     246667788899999999998877655443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.59  E-value=0.9  Score=16.42  Aligned_cols=28  Identities=18%  Similarity=0.256  Sum_probs=17.5

Q ss_pred             CCcEEEEEecCCCCEEEEEc-CC--CeEEEE
Q psy7058          32 QRWVWDAAFTLDSKFLLTAS-SD--GVARLW   59 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~-~~--~~i~~~   59 (85)
                      ........|+|||+.++..+ .+  +...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34567889999998877544 34  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=86.85  E-value=4.4  Score=23.56  Aligned_cols=70  Identities=10%  Similarity=-0.022  Sum_probs=39.4

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE-EEEEcC---CCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF-LLTASS---DGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      ..|.+-|..... ...+.. .. ......|+|+|+. ++..+.   +..|.++|+.+++...-.. .........|+|
T Consensus       169 ~~l~~~d~dg~~-~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP  242 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK  242 (419)
T ss_pred             ceEEEECCCCCc-eeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC
Confidence            356665554333 232322 22 5778999999984 553322   3578888987775433222 333444556666

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.46  E-value=4  Score=22.73  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=30.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN   60 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (85)
                      .+++++.......-||--. .............+..+.|++++...... ..+.+++=+
T Consensus       157 ~~vavs~~G~~~~s~~~G~-~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  157 RYVAVSSRGNFYSSWDPGQ-TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             -EEEEETTSSEEEEE-TT--SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             cEEEEECcccEEEEecCCC-ccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            4455555544455666331 12222222245679999999998776654 778888776

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.33  E-value=6.5  Score=24.99  Aligned_cols=70  Identities=11%  Similarity=0.198  Sum_probs=42.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCC-----------CcEEEEEecC--CCCEEEEEcC----------CCeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQ-----------RWVWDAAFTL--DSKFLLTASS----------DGVARL   58 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~~~~~~~----------~~~i~~   58 (85)
                      ++++.+..|+.+.-.|..+++..-.+.....           .....+.-.|  .+..++.++.          ++.|+-
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            3677888899999999999988865432100           0000111122  1334444432          578999


Q ss_pred             EEcCCcccccccc
Q psy7058          59 WNIETGEVDKEYS   71 (85)
Q Consensus        59 ~~~~~~~~~~~~~   71 (85)
                      +|.++++.+..+.
T Consensus       341 ~Da~TGkl~W~~~  353 (764)
T TIGR03074       341 FDVNTGALVWAWD  353 (764)
T ss_pred             EECCCCcEeeEEe
Confidence            9999998776654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=84.66  E-value=4.6  Score=21.81  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=31.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccC--------CCcEEEEEecCCCCEEEEEcCCCeEEEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTAN--------QRWVWDAAFTLDSKFLLTASSDGVARLW   59 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~   59 (85)
                      |.+++.+..+..+..+| ..+++...+.-..        -.....+++.++|.+.++. +.+..+.|
T Consensus       183 ~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  183 GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            35677888888888889 5566655443311        1346789999988665554 55555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=84.23  E-value=7.5  Score=23.90  Aligned_cols=26  Identities=12%  Similarity=-0.022  Sum_probs=19.9

Q ss_pred             CCcEEEEEecCCCCEEEEEcCCCeEEE
Q psy7058          32 QRWVWDAAFTLDSKFLLTASSDGVARL   58 (85)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~i~~   58 (85)
                      ...|..+.|+|||..++... ++.|.+
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            34599999999999877654 466666

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.93  E-value=5.4  Score=22.02  Aligned_cols=56  Identities=9%  Similarity=0.153  Sum_probs=36.3

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc------CCCeEEEEEcCCcc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS------SDGVARLWNIETGE   65 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~   65 (85)
                      ....+++||..+.+-. .+...-.+.|..+.|..+...++.|.      ....+..||..+..
T Consensus        14 ~C~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~   75 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT   75 (281)
T ss_pred             CCCEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence            3456999997754433 33222556799999986666666553      34568888886553

>PRK13616 lipoprotein LpqB; Provisional

Probab=83.52  E-value=8.1  Score=23.76  Aligned_cols=48  Identities=13%  Similarity=0.160  Sum_probs=28.0

Q ss_pred             EEEEEecCCCCEEEEEcCC------------CeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          35 VWDAAFTLDSKFLLTASSD------------GVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      ...-.|+|+|..+.+....            +.+.+.++..+....   .....|..++|||.
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD  458 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD  458 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC
Confidence            6778899998876665422            233333443333222   23457889999874

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=82.77  E-value=9.1  Score=23.75  Aligned_cols=34  Identities=21%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             cCCCcEEEEEecCCCCEEEEE-cCCCeEEEEEcCC
Q psy7058          30 ANQRWVWDAAFTLDSKFLLTA-SSDGVARLWNIET   63 (85)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~   63 (85)
                      ...+.|.|.+|.+||+.++.+ +..=.-++||-.+
T Consensus       153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            356779999999999876544 4455788898643

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=82.42  E-value=7.2  Score=22.34  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=48.8

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCccccccccccccceeEE
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS---DGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++....+..+.+.|..+...........  ....+.+++++..+.....   ++.+.+.|..+.+..........+ ..+
T Consensus        89 yv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~  165 (381)
T COG3391          89 YVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV  165 (381)
T ss_pred             EEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE
Confidence            3444456778888876665555554322  4567889999877766554   678888888877766654432223 444


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +++|
T Consensus       166 a~~p  169 (381)
T COG3391         166 AVDP  169 (381)
T ss_pred             EECC
Confidence            4443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.56  E-value=11  Score=24.03  Aligned_cols=46  Identities=13%  Similarity=0.064  Sum_probs=30.2

Q ss_pred             CceeEE-eeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEec-CCCCE
Q psy7058           1 MGLLAT-TSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT-LDSKF   46 (85)
Q Consensus         1 g~~l~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   46 (85)
                      |++++. +..|+.++-+|.++++.+-+........-.-+.+. .+|+.
T Consensus       691 gglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~~~~GkQ  738 (764)
T TIGR03074       691 GGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYMGKDGKQ  738 (764)
T ss_pred             CCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEEecCCEE
Confidence            356665 67899999999999998877665332222334444 46654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2114|consensus

Probab=81.21  E-value=12  Score=24.23  Aligned_cols=69  Identities=7%  Similarity=0.074  Sum_probs=41.4

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-ccccceeEE
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSL   80 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~v~~~   80 (85)
                      ..|.+|.+....+.......++..++|..+++....+..+ .+..+.+|+....++-.++. ++......+
T Consensus       193 ~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~  262 (933)
T KOG2114|consen  193 EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVGEKKEMLVF  262 (933)
T ss_pred             ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence            4567777663333333233367778888887654434433 45578899988766666676 555444433

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=80.73  E-value=7.3  Score=21.31  Aligned_cols=55  Identities=15%  Similarity=0.234  Sum_probs=34.4

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEec--CC-CCE-EEEEcCCCeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT--LD-SKF-LLTASSDGVARLW   59 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~i~~~   59 (85)
                      -|+.|.+++.|++.|........+..... -++ .+...  .| ..+ ++.++.||.|++.
T Consensus       197 cLViGTE~~~i~iLd~~af~il~~~~lps-vPv-~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  197 CLVIGTESGEIYILDPQAFTILKQVQLPS-VPV-FISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             eEEEEecCCeEEEECchhheeEEEEecCC-Cce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            47889999999999988777777666522 222 22221  12 332 4566788887653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=80.58  E-value=7.2  Score=21.12  Aligned_cols=59  Identities=12%  Similarity=0.138  Sum_probs=40.1

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      ++++....+.|...+. +++..+++..........+.+..++.++++--.++.+.++++.
T Consensus        36 LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   36 LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4567777788888886 4777777765334557888888788777777678899999884

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-05
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-05
2h9l_A	329	Wdr5delta23 Length = 329		3e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		4e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-05
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		9e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		2e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		8e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		8e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		9e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		9e-04

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 3   LLATTSADQTARIWNTED------FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVA 56
           +L + S D+T  IW   +      F +  +  T +  +V D A + ++ F +++S D   
Sbjct: 41  VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 57  RLWNIETGEVDKEYSGHQKAITSLAF 82
           RLW++ TG   K + GHQ  + S+AF
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAF 126

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 3   LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           ++ + S D+T  +W    +  ++ + +     +  +V D   + D +F L+ S DG  RL
Sbjct: 53  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 59  WNIETGEVDKEYSGHQKAITSLAF 82
           W++ TG   + + GH K + S+AF
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAF 136

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 3   LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           ++ + S D+T  +W    +  ++ + +     +  +V D   + D +F L+ S DG  RL
Sbjct: 30  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 59  WNIETGEVDKEYSGHQKAITSLAF 82
           W++ TG   + + GH K + S+AF
Sbjct: 90  WDLTTGTTTRRFVGHTKDVLSVAF 113

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           +A+ S D+T ++WN  +  L++ L T +   VW  AF+ D + + +AS D   +LWN   
Sbjct: 31  IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 87
Query: 64  GEVDKEYSGHQKAITSLAFC 83
           G++ +  +GH  ++  +AF 
Sbjct: 88  GQLLQTLTGHSSSVRGVAFS 107

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 2   GLLATTSADQTARIWNTE---DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           G++ T S D++  +W+     D +L R L     R   +     D K++++AS D   ++
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVV-DFDDKYIVSASGDRTIKV 280
Query: 59  WNIETGEVDKEYSGHQKAITSLAFCD 84
           WN  T E  +  +GH++ I  L + D
Sbjct: 281 WNTSTCEFVRTLNGHKRGIACLQYRD 306

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4    LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
             ++TSAD+TA+IW+ +  S + EL   N   V  +AF+LD   L T   +G  R+WN+  
Sbjct: 1107 FSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
Query: 64   GEV 66
            G++
Sbjct: 1166 GQL 1168

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4    LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
             ++TSAD+TA+IW+ +  S + EL   N   V  +AF+LD   L T   +G  R+WN+  
Sbjct: 1100 FSSTSADKTAKIWSFDLLSPLHELKGHNG-CVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Query: 64   GEV 66
            G++
Sbjct: 1159 GQL 1161

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 103 GKCLKTLKGHSNYVFCCNF 121

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 103 GKCLKTLKGHSNYVFCCNF 121

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 34  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 92
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 93  GKCLKTLKGHSNYVFCCNF 111

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 37  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 95
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 96  GKCLKTLKGHSNYVFCCNF 114

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 55  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 113
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 114 GKCLKTLKGHSNYVFCCNF 132

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 97  GKCLKTLKGHSNYVFCCNF 115

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 60  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 118
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 119 GKCLKTLKGHSNYVFCCNF 137

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 39  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 97
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 98  GKCLKTLKGHSNYVFCCNF 116

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 43  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 101
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 102 GKCLKTLKGHSNYVFCCNF 120

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 38  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 97  GKCLKTLKGHSNYVFCCNF 115

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 62  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 120
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 121 GKCLKTLKGHSNYVFCCNF 139

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 44  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 102
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 103 GKCLKTLKGHSNYVFCCNF 121

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA++SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 41  LASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 3   LLATTSADQTARIWN-TED---FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           ++ + S D++  +W  T+D   + + +   T +  +V D   + D +F L+ S DG  RL
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 59  WNIETGEVDKEYSGHQKAITSLAF 82
           W++  G   + + GH K + S+AF
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAF 480

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           LLA+ SAD T ++W+ + F  +R +   +   V   +   +   +++AS D   ++W ++
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQ 222
Query: 63  TGEVDKEYSGHQK 75
           TG   K ++GH++
Sbjct: 223 TGYCVKTFTGHRE 235

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           LA +SAD+  +IW   D    + + + ++  + D A++ DS  L++AS D   ++W++ +
Sbjct: 41  LAASSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 64  GEVDKEYSGHQKAITSLAF 82
           G+  K   GH   +    F
Sbjct: 100 GKCLKTLKGHSNYVFCCNF 118

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           +L + +AD T +IW+ +    ++ L   N+          +  F++T+S DG  +LW+++
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Query: 63  TGE 65
           TGE
Sbjct: 391 TGE 393

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 4   LATTSADQTARIW--NTEDFSLVRELGTANQR------WVWDAAFTLDSKFLLTASSDGV 55
           + +TS D+T   W  N +  S     G  ++R      +V D A + +  F ++AS D  
Sbjct: 31  VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 56  ARLWNIETGEVDKEYSGHQKAITSLAF 82
            RLWN++ G+   ++ GH K + S+AF
Sbjct: 91  LRLWNLQNGQCQYKFLGHTKDVLSVAF 117

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 4   LATTSADQTARIWNTEDFSLVREL------GTANQRWVWDAAFTLDSKFLLTASSDGVAR 57
           +A  S D+  R+W++E   LV  L      GT ++  V+   FT D + +++ S D   +
Sbjct: 222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281
Query: 58  LWNIE------------TGEVDKEYSGHQKAITSLA 81
           LWN++            +G  +  Y GH+  + S+A
Sbjct: 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           +A+ SAD+T +IWN     + + +    +            + L++ S++G     N E 
Sbjct: 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313
Query: 64  GEVDKEYSGHQKAITSLA 81
           G +D+   GH KAIT+L+
Sbjct: 314 GSIDQVRYGHNKAITALS 331

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3   LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           LL + S D+T   W    + + F +       +   V D   T D  + L+AS D   RL
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59  WNIETGEVDKEYSGHQKAITSL 80
           W++ TGE  + + GH+  + S+
Sbjct: 92  WDVATGETYQRFVGHKSDVMSV 113

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3   LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           LL + S D+T   W    + + F +       +   V D   T D  + L+AS D   RL
Sbjct: 26  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 59  WNIETGEVDKEYSGHQKAITSL 80
           W++ TGE  + + GH+  + S+
Sbjct: 86  WDVATGETYQRFVGHKSDVMSV 107

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 38.5 bits (88), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3   LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           LL + S D+T   W    + + F +       +   V D   T D  + L+AS D   RL
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59  WNIETGEVDKEYSGHQKAITSL 80
           W++ TGE  + + GH+  + S+
Sbjct: 92  WDVATGETYQRFVGHKSDVMSV 113

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3   LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           LL + S D+T   W    + + F +       +   V D   T D  + L+AS D   RL
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59  WNIETGEVDKEYSGHQKAITSL 80
           W++ TGE  + + GH+  + S+
Sbjct: 92  WDVATGETYQRFVGHKSDVMSV 113

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 3   LLATTSADQTARIW----NTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
           LL + S D+T   W    + + F +       +   V D   T D  + L+AS D   RL
Sbjct: 32  LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 59  WNIETGEVDKEYSGHQKAITSL 80
           W++ TGE  + + GH+  + S+
Sbjct: 92  WDVATGETYQRFVGHKSDVMSV 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.86
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.86
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.86
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.85
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.85
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.85
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.85
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.83
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.83
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.82
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.82
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.82
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.82
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.82
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.82
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.82
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.81
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.8
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.8
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.8
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.8
2pm7_B	297	Protein transport protein SEC13, protein transport	99.8
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.8
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.8
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.79
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.79
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.79
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.79
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.79
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.79
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.79
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.78
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.78
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.78
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.78
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.78
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.78
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.78
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.78
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.78
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.77
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.77
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.77
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.77
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.77
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.77
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.77
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.77
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.76
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.76
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.76
2pm7_B	297	Protein transport protein SEC13, protein transport	99.75
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.75
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.75
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.75
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.75
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.75
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.75
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.75
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.74
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.74
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.74
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.74
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.74
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.73
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.73
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.73
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.73
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.73
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.73
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.72
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.72
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.72
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.72
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.71
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.71
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.71
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.71
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.71
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.7
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.7
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.7
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.7
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.7
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.7
3jro_A	753	Fusion protein of protein transport protein SEC13	99.7
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.7
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.69
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.69
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.69
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.69
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.69
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.69
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.69
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.68
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.68
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.68
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.67
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.67
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.67
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.67
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.67
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.67
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.66
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.66
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.66
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.66
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.66
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.66
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.66
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.65
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.65
3jro_A	753	Fusion protein of protein transport protein SEC13	99.65
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.62
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.61
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.6
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.54
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.53
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.48
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.42
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.41
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.4
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.38
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.31
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.28
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.24
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.22
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.22
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.2
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.19
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.18
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.16
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.13
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.12
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.11
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.11
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.1
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.07
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.06
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.05
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.05
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.02
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.02
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.02
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.01
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.98
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.97
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.95
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.93
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.86
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.8
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.73
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.63
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.62
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.6
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.48
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.38
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.35
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.31
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.31
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.29
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.27
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.26
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.25
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.19
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.19
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.16
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.16
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.15
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.13
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.12
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.04
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.02
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.0
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.98
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.97
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.97
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.97
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.81
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.81
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.79
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.62
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.6
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.54
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.41
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.34
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.32
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.24
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.13
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.12
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.06
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.04
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.04
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.99
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	96.97
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.96
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.81
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.64
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.55
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.54
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.48
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	96.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.25
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.93
2qe8_A	343	Uncharacterized protein; structural genomics, join	95.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.65
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.56
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.54
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	95.37
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.33
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.36
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.01
2p4o_A	306	Hypothetical protein; putative lactonase, structur	93.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	93.64
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.51
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	93.34
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	93.32
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	93.1
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	92.5
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	92.49
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	92.47
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	92.27
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	91.65
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.5
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.16
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.08
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.41
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	88.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	88.83
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	87.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	86.85
2p4o_A	306	Hypothetical protein; putative lactonase, structur	86.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	86.1
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.92
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	85.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	84.19
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	83.56
3v65_B	386	Low-density lipoprotein receptor-related protein;	82.82
3kya_A	496	Putative phosphatase; structural genomics, joint c	82.67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	80.92

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.86  E-value=1.7e-20  Score=97.75  Aligned_cols=84  Identities=24%  Similarity=0.447  Sum_probs=77.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +++|++++.|+.|++||+++++....+.. +...+.+++|+|++.++++++.|+.|++||+.+++++..+..|...|.++
T Consensus       218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v  296 (321)
T 3ow8_A          218 SQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV  296 (321)
T ss_dssp             SCEEEEECTTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCcceeEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence            46899999999999999999888887776 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       297 ~~s~~  301 (321)
T 3ow8_A          297 KYNGN  301 (321)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99873

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.86  E-value=2e-20  Score=96.65  Aligned_cols=84  Identities=24%  Similarity=0.306  Sum_probs=78.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|+.+++||+.++.....+.. +..++.++.|+|++.++++++.|+.|++||+.+++.+..+.+|...|+++
T Consensus        25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  103 (304)
T 2ynn_A           25 EPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (304)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            46899999999999999999988888876 77789999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       104 ~~~~~  108 (304)
T 2ynn_A          104 AVHPT  108 (304)
T ss_dssp             EECSS
T ss_pred             EEcCC
Confidence            99874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.86  E-value=2e-20  Score=99.94  Aligned_cols=83  Identities=25%  Similarity=0.475  Sum_probs=77.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++++++.|+.|++||+.+++....+.+ |...+.++.|+|++.++++++.|+.|++||+.+++++..+.+|...|.+++
T Consensus       309 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~  387 (410)
T 1vyh_C          309 PFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD  387 (410)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence            5799999999999999999998888877 888899999999999999999999999999999999999999999999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       388 ~~~~  391 (410)
T 1vyh_C          388 FHKT  391 (410)
T ss_dssp             ECSS
T ss_pred             EcCC
Confidence            9874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.86  E-value=2e-20  Score=97.45  Aligned_cols=84  Identities=25%  Similarity=0.406  Sum_probs=77.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|+.|++||+.+++....+.. +..++.+++|+|++.++++++.|+.|++||++.++....+.+|...|.++
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  254 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV  254 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE
Confidence            46899999999999999999998888876 77889999999999999999999999999999999888999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       255 ~~sp~  259 (321)
T 3ow8_A          255 AFCPD  259 (321)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99874

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.85  E-value=6.6e-20  Score=94.77  Aligned_cols=82  Identities=26%  Similarity=0.304  Sum_probs=76.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +++++++.|+.|++||+++++....+.. |...+..+.|+|++..+++++.|+.|++||+.+++.+..+..+...+.+++
T Consensus       199 ~~l~s~s~D~~i~iWd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~  277 (304)
T 2ynn_A          199 PYMITASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA  277 (304)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEE
T ss_pred             CEEEEEcCCCeEEEEeCCCCccceeeCC-CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEE
Confidence            5799999999999999999999888887 888899999999999999999999999999999999999998999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |+|
T Consensus       278 ~~~  280 (304)
T 2ynn_A          278 THP  280 (304)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            887

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.85  E-value=2.5e-20  Score=98.03  Aligned_cols=82  Identities=16%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +++++++.|+.|++||+++++.+..+.. |...|.+++|+|++ .++++++.|+.|++||+..++.. .+.+|.+.|+++
T Consensus       228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v  305 (344)
T 4gqb_B          228 EVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA  305 (344)
T ss_dssp             TEEEEEETTSEEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE
T ss_pred             cceEEeccCCcEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE
Confidence            4688999999999999999999888887 88889999999987 57899999999999999887654 567899999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       306 ~~sp~  310 (344)
T 4gqb_B          306 TWSPL  310 (344)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            99973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.85  E-value=3.1e-20  Score=97.63  Aligned_cols=84  Identities=13%  Similarity=0.204  Sum_probs=74.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeee---ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELG---TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      +.+++++.|+.|++||+.+++......   .+|...|.+++|+|+++++++++.|+.|++||+.+++.+..+.+|...|+
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            468899999999999999876554332   24788899999999999999999999999999999999999999999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       174 ~~~~~~~  180 (344)
T 4gqb_B          174 CVAASPH  180 (344)
T ss_dssp             EEEECSS
T ss_pred             EEEecCC
Confidence            9999873

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.85  E-value=3.5e-20  Score=99.03  Aligned_cols=84  Identities=24%  Similarity=0.426  Sum_probs=78.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.|++||+.+++....+.. |...|.+++|+|++.++++++.|+.|++||+...+++..+.+|...|.++
T Consensus       120 ~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v  198 (410)
T 1vyh_C          120 FSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV  198 (410)
T ss_dssp             SSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE
Confidence            36799999999999999999988888877 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       199 ~~~p~  203 (410)
T 1vyh_C          199 SIMPN  203 (410)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            99873

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.84  E-value=1e-19  Score=95.25  Aligned_cols=84  Identities=30%  Similarity=0.468  Sum_probs=73.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCc-------eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      +++|++++.|+.|++||+.+.       .+...+.+ |...|.+++|+|++.++++++.|+.|++||+++++.+..+.+|
T Consensus        39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h  117 (343)
T 2xzm_R           39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH  117 (343)
T ss_dssp             CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            467999999999999998753       33344444 8888999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      ...|.+++|+|.
T Consensus       118 ~~~v~~v~~sp~  129 (343)
T 2xzm_R          118 QSEVYSVAFSPD  129 (343)
T ss_dssp             CSCEEEEEECSS
T ss_pred             CCcEEEEEECCC
Confidence            999999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1e-19  Score=95.24  Aligned_cols=85  Identities=16%  Similarity=0.148  Sum_probs=74.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc-ccccc-ccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD-KEYSG-HQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~~v~   78 (85)
                      ++++++++.|+.+++||+.+++........+...+.+++|+|++.++++++.|+.|++||+++++.. ..+.. |..+|.
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIK  218 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEE
Confidence            4678999999999999999988866554445557999999999999999999999999999999877 67887 999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       219 ~l~fs~~  225 (343)
T 3lrv_A          219 EVKFADN  225 (343)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.83  E-value=3.3e-19  Score=93.31  Aligned_cols=83  Identities=20%  Similarity=0.472  Sum_probs=76.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.+++++.|+.+++||+.+++....+.. |...+.++.|+|++.++++++.|+.|++||++++.....+.+|...|++++
T Consensus       155 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
T 1got_B          155 NQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC  233 (340)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred             CcEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE
Confidence            3588999999999999999998888876 888899999999999999999999999999999999999999999999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       234 ~~p~  237 (340)
T 1got_B          234 FFPN  237 (340)
T ss_dssp             ECTT
T ss_pred             EcCC
Confidence            9884

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.83  E-value=2.6e-19  Score=93.11  Aligned_cols=83  Identities=30%  Similarity=0.464  Sum_probs=73.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCc-----eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF-----SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   76 (85)
                      ++|++++.|+.+++||+...     .+...+.+ |...+.++.|+|++.++++++.|+.|++||+.+++.+..+.+|...
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~  109 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD  109 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             cEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc
Confidence            57999999999999998642     33445555 8888999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus       110 v~~~~~~~~  118 (319)
T 3frx_A          110 VMSVDIDKK  118 (319)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEcCC
Confidence            999999873

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.82  E-value=7.1e-19  Score=90.87  Aligned_cols=84  Identities=26%  Similarity=0.453  Sum_probs=77.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |+++++++.|+.+++|+..+++....+.. +...+.+++|+|++.++++++.|+.|++||+.+++.+..+.+|...|.++
T Consensus        35 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~  113 (312)
T 4ery_A           35 GEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC  113 (312)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            46899999999999999998888777766 77889999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       114 ~~~~~  118 (312)
T 4ery_A          114 NFNPQ  118 (312)
T ss_dssp             EECSS
T ss_pred             EEcCC
Confidence            99873

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.82  E-value=3.7e-19  Score=97.66  Aligned_cols=82  Identities=29%  Similarity=0.560  Sum_probs=73.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|+.|++||. +++....+.+ |...|.+++|+|+++++++++.|+.|++||. +++.+..+.+|...|.++
T Consensus        28 g~~las~~~d~~v~iWd~-~~~~~~~l~g-h~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~  104 (577)
T 2ymu_A           28 GQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV  104 (577)
T ss_dssp             SSCEEEEETTSEEEEECT-TSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEE
T ss_pred             CCEEEEEeCCCEEEEEEC-CCCEEEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEE
Confidence            578999999999999995 6778888877 8889999999999999999999999999996 577788899999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       105 ~~s~d  109 (577)
T 2ymu_A          105 AFSPD  109 (577)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.82  E-value=8.8e-19  Score=90.52  Aligned_cols=84  Identities=24%  Similarity=0.495  Sum_probs=77.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.+++||+.+++....+.. +...+.++.|+|++.++++++.|+.|++||+++++.+..+..|..+|.++
T Consensus        77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           77 SNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence            46899999999999999999988888876 77889999999999999999999999999999999888899999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       156 ~~~~~  160 (312)
T 4ery_A          156 HFNRD  160 (312)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            99873

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.82  E-value=7.8e-19  Score=93.39  Aligned_cols=84  Identities=14%  Similarity=0.222  Sum_probs=76.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|+.+++||+.+++....+.. |...+.+++|+|++.++++++.|+.|++||+.+++....+.+|...|.++
T Consensus       109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  187 (420)
T 3vl1_A          109 MRRFILGTTEGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI  187 (420)
T ss_dssp             SCEEEEEETTSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred             CCEEEEEECCCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence            46899999999999999998887766555 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       188 ~~~~~  192 (420)
T 3vl1_A          188 AIIDR  192 (420)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            99873

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.82  E-value=3.7e-19  Score=93.79  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=72.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      .++++++.|+.|++||+++++....+.. +...+.+++|+|++ .++++++.|+.|++||+++++.+..+ +|...|+++
T Consensus       240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v  317 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV  317 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred             ceEEEeecccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence            4688999999999999999988888876 77889999999987 57899999999999999988876655 699999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       318 afsP  321 (357)
T 4g56_B          318 AWSP  321 (357)
T ss_dssp             EECS
T ss_pred             EEeC
Confidence            9997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.82  E-value=1.3e-18  Score=91.67  Aligned_cols=83  Identities=17%  Similarity=0.337  Sum_probs=75.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +.+++++.|+.+++||+.+++....+.. |...+.++.++|  ++..+++++.|+.|++||+++++++..+..|...|++
T Consensus       167 ~~l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~  245 (354)
T 2pbi_B          167 MQILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS  245 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEE
Confidence            4789999999999999999998888877 778899999987  5789999999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       246 v~~~p~  251 (354)
T 2pbi_B          246 VRYYPS  251 (354)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            999873

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.82  E-value=1.5e-18  Score=90.85  Aligned_cols=85  Identities=18%  Similarity=0.238  Sum_probs=74.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+++++++.|+.+++||+++++....+... ....+.+++|+|++.++++++.|+.|++||+.+++....+.+|...|.+
T Consensus       238 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~  317 (340)
T 1got_B          238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC  317 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEE
Confidence            467999999999999999988777665431 3346999999999999999999999999999999988899999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       318 ~~~s~d  323 (340)
T 1got_B          318 LGVTDD  323 (340)
T ss_dssp             EEECTT
T ss_pred             EEEcCC
Confidence            999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.81  E-value=1.9e-18  Score=89.84  Aligned_cols=82  Identities=16%  Similarity=0.307  Sum_probs=74.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |+++++++.|+.|++||+.+++....+.. |...+.++.|+|++..+++++.|+.|++||++ ++.+..+.+|...|.++
T Consensus        77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~  154 (319)
T 3frx_A           77 GAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV  154 (319)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence            46899999999999999999998888877 88889999999999999999999999999996 45667778899999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       155 ~~~~  158 (319)
T 3frx_A          155 RVVP  158 (319)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            9876

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.80  E-value=1.6e-18  Score=90.96  Aligned_cols=85  Identities=29%  Similarity=0.439  Sum_probs=71.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeee--eeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc--cccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVR--ELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG--EVDKEYSGHQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~   76 (85)
                      |++|++++.|+.|++||+.++....  .+...|...|.+++|+|++.++++++.|+.+++|++...  +....+.+|...
T Consensus        28 g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~  107 (345)
T 3fm0_A           28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE  107 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC
T ss_pred             CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC
Confidence            5689999999999999998765432  222347888999999999999999999999999998766  456778899999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus       108 v~~v~~sp~  116 (345)
T 3fm0_A          108 VKSVAWAPS  116 (345)
T ss_dssp             EEEEEECTT
T ss_pred             ceEEEEeCC
Confidence            999999984

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2.5e-18  Score=89.78  Aligned_cols=84  Identities=24%  Similarity=0.309  Sum_probs=71.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCc----eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc--cccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDF----SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG--EVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~   74 (85)
                      |++|++++.|+.+++||+...    +....+.. |...+.++.|+|++.++++++.|+.|++|+...+  +++..+.+|.
T Consensus       119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~  197 (330)
T 2hes_X          119 GYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE  197 (330)
T ss_dssp             SCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC
Confidence            468999999999999999532    33444544 7788999999999999999999999999998765  5677888999


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..|.+++|+|.
T Consensus       198 ~~v~~~~~~~~  208 (330)
T 2hes_X          198 GTVWSSDFDKT  208 (330)
T ss_dssp             SCEEEEEECCS
T ss_pred             CcEEEEEecCC
Confidence            99999999873

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.80  E-value=3.3e-18  Score=89.32  Aligned_cols=84  Identities=25%  Similarity=0.374  Sum_probs=76.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccc---cccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEY---SGHQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~   76 (85)
                      |++|++++.|+.|++||+.+++....+.. +...+.+++|+| ++..+++++.|+.|++||+++++....+   ..|...
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  163 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE  163 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc
Confidence            35799999999999999999988888876 788899999999 8999999999999999999998887777   679999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus       164 v~~~~~~~~  172 (366)
T 3k26_A          164 VLSADYDLL  172 (366)
T ss_dssp             EEEEEECTT
T ss_pred             eeEEEECCC
Confidence            999999873

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.80  E-value=1.2e-18  Score=92.17  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=58.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      |++|++|+.|+.|++||+.+++++..+...|...|++++|+|+++++++++.|++|+||+++..
T Consensus       281 g~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          281 GELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            5789999999999999999999988875558899999999999999999999999999999644

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.80  E-value=3.2e-18  Score=88.25  Aligned_cols=83  Identities=24%  Similarity=0.361  Sum_probs=70.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCc--eeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCcc--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDF--SLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGE--VDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~   74 (85)
                      |++|++++.|+.|++||+.+.  +....+.+ |...|.+++|++  ++..+++++.|+.|++||+.+++  .+..+..|.
T Consensus        21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~   99 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS   99 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred             CCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence            578999999999999998743  45566665 888999999986  38999999999999999998764  455677789


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..|.+++|+|
T Consensus       100 ~~v~~v~~~p  109 (297)
T 2pm7_B          100 ASVNSVQWAP  109 (297)
T ss_dssp             SCEEEEEECC
T ss_pred             CceeEEEeCc
Confidence            9999999987

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.80  E-value=4.6e-18  Score=88.77  Aligned_cols=84  Identities=24%  Similarity=0.379  Sum_probs=65.6

Q ss_pred             CceeEEeeCCCcEEEeeCCC-------ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc----ccccc
Q psy7058           1 MGLLATTSADQTARIWNTED-------FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG----EVDKE   69 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~   69 (85)
                      +++|++++.|+.|++||...       .+....+.. |...|.+++|+|++.++++++.|+.|++||+...    +++..
T Consensus        70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             SSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred             CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence            46799999999999999853       233444444 7888999999999999999999999999999532    45567


Q ss_pred             ccccccceeEEEEeCC
Q psy7058          70 YSGHQKAITSLAFCDF   85 (85)
Q Consensus        70 ~~~~~~~v~~~~~~~~   85 (85)
                      +.+|...|.+++|+|.
T Consensus       149 ~~~h~~~v~~v~~~p~  164 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPS  164 (330)
T ss_dssp             ECCCSSCEEEEEECSS
T ss_pred             eccCCCceEEEEECCC
Confidence            7889999999999884

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.80  E-value=1.2e-18  Score=90.53  Aligned_cols=84  Identities=25%  Similarity=0.444  Sum_probs=70.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCcc--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGE--VDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~   74 (85)
                      |++|++++.|+.+++||+.++.  ....+.+ |...|.+++|++  ++..+++++.|+.|++||++++.  ....+.+|.
T Consensus        25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~  103 (316)
T 3bg1_A           25 GTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD  103 (316)
T ss_dssp             GCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence            4689999999999999998764  3445555 888999999986  48999999999999999998763  455677899


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..|++++|+|.
T Consensus       104 ~~V~~v~~~p~  114 (316)
T 3bg1_A          104 SSVNSVCWAPH  114 (316)
T ss_dssp             SCCCEEEECCT
T ss_pred             CceEEEEECCC
Confidence            99999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.79  E-value=6.4e-18  Score=90.42  Aligned_cols=82  Identities=16%  Similarity=0.398  Sum_probs=71.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.|++| .|++|++||+.+++....+.. .+...|++++|+|+|.++++|+.|+.|++||+.+++.+..+.+|...+.++
T Consensus       117 n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~  195 (420)
T 4gga_A          117 NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL  195 (420)
T ss_dssp             SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEE
Confidence            445554 599999999999988776654 356789999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ++++
T Consensus       196 s~~~  199 (420)
T 4gga_A          196 SWNS  199 (420)
T ss_dssp             EEET
T ss_pred             eeCC
Confidence            8875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.79  E-value=4.7e-18  Score=94.51  Aligned_cols=82  Identities=18%  Similarity=0.358  Sum_probs=73.9

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-------cccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-------GHQK   75 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~   75 (85)
                      .|++++.|+.+++||..+++....+.. |...|.+++|+|++.++++++.|+.|++||+.+++....+.       +|..
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~  240 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG  240 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCC
Confidence            589999999999999998888777766 88899999999999999999999999999999888776663       6999


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .|.+++|+|.
T Consensus       241 ~V~~v~~spd  250 (611)
T 1nr0_A          241 SVFGLTWSPD  250 (611)
T ss_dssp             CEEEEEECTT
T ss_pred             CEEEEEECCC
Confidence            9999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.79  E-value=8.1e-18  Score=88.13  Aligned_cols=83  Identities=22%  Similarity=0.345  Sum_probs=70.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc--cccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD--KEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~v~   78 (85)
                      +.++++++.|+.+++||+.+++....+.. |...+.+++|+|++..+++++.|+.|++||+......  .....|...|.
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee
Confidence            35789999999999999999988888877 8888999999999999999999999999999743322  12236788899


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      +++|+|
T Consensus       167 ~~~~~~  172 (343)
T 2xzm_R          167 CVRYSP  172 (343)
T ss_dssp             EEEECC
T ss_pred             eeeecc
Confidence            999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.79  E-value=6.4e-18  Score=94.91  Aligned_cols=83  Identities=28%  Similarity=0.514  Sum_probs=73.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCc-----eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF-----SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   76 (85)
                      ++|++++.|+.|++||+.+.     .....+.. |...|.+++|+|++.++++++.|+.|++||+.+++....+.+|...
T Consensus       396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~  474 (694)
T 3dm0_A          396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD  474 (694)
T ss_dssp             SEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred             CEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence            57899999999999998753     23344444 8888999999999999999999999999999999999999999999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus       475 v~~~~~s~~  483 (694)
T 3dm0_A          475 VLSVAFSLD  483 (694)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.79  E-value=8.5e-18  Score=88.52  Aligned_cols=85  Identities=18%  Similarity=0.233  Sum_probs=74.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+++++++.|+.+++||+++......+... ....+.++.|+|++.++++++.|+.|++||+.+++.+..+.+|...|.+
T Consensus       252 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~  331 (354)
T 2pbi_B          252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST  331 (354)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence            467999999999999999988776655431 2346899999999999999999999999999999988889999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       332 l~~spd  337 (354)
T 2pbi_B          332 LRVSPD  337 (354)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.79  E-value=4.1e-18  Score=93.54  Aligned_cols=82  Identities=28%  Similarity=0.482  Sum_probs=73.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|+.|++||. +++....+.. |...|++++|+|+++++++++.|+.|++||. +++.+..+.+|...|.++
T Consensus       479 ~~~las~~~d~~i~iw~~-~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          479 GQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV  555 (577)
T ss_dssp             SCEEEEEETTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEE
T ss_pred             CCEEEEEeCCCEEEEEcC-CCCEEEEEeC-CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEE
Confidence            468999999999999995 5777777776 8888999999999999999999999999996 677888899999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       556 ~fs~d  560 (577)
T 2ymu_A          556 AFSPD  560 (577)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            99974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.79  E-value=6.6e-18  Score=89.80  Aligned_cols=84  Identities=25%  Similarity=0.328  Sum_probs=74.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCc-------eeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCccccccc--
Q psy7058           1 MGLLATTSADQTARIWNTEDF-------SLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEVDKEY--   70 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~--   70 (85)
                      +++|++++.|+.|++||+.++       ++...+.. |...+.+++|+|++ ..+++++.|+.|++||+.+++....+  
T Consensus        94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            468999999999999999887       45556655 78889999999998 69999999999999999999988888  


Q ss_pred             cccccceeEEEEeCC
Q psy7058          71 SGHQKAITSLAFCDF   85 (85)
Q Consensus        71 ~~~~~~v~~~~~~~~   85 (85)
                      ..|...|.+++|+|.
T Consensus       173 ~~~~~~v~~~~~~~~  187 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRD  187 (402)
T ss_dssp             TTCCSCEEEEEECTT
T ss_pred             CCCCCceEEEEECCC
Confidence            789999999999873

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.78  E-value=8.5e-18  Score=88.20  Aligned_cols=84  Identities=20%  Similarity=0.317  Sum_probs=70.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc---cccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE---VDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~   75 (85)
                      |++|++++.|+.+++||.....  ....+.. |...|.+++|+|++.++++++.|+.|++||+....   .+..+..|..
T Consensus        73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           73 GNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ  151 (345)
T ss_dssp             SSEEEEEETTSCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred             CCEEEEEECCCcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence            4689999999999999987653  3455555 88889999999999999999999999999997653   3456778999


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .|.+++|+|.
T Consensus       152 ~v~~~~~~p~  161 (345)
T 3fm0_A          152 DVKHVVWHPS  161 (345)
T ss_dssp             CEEEEEECSS
T ss_pred             CeEEEEECCC
Confidence            9999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.78  E-value=1.4e-18  Score=92.51  Aligned_cols=84  Identities=14%  Similarity=0.153  Sum_probs=71.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeee----eccCCCcEEEEEecC--------CCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVREL----GTANQRWVWDAAFTL--------DSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      .++++++.|+++++||+.+++.....    ..+|...|++++|+|        +++++++++.|++|++||+.++.+...
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            46899999999999999887654321    124888999999987        789999999999999999998888888


Q ss_pred             ccccccceeEEEEeCC
Q psy7058          70 YSGHQKAITSLAFCDF   85 (85)
Q Consensus        70 ~~~~~~~v~~~~~~~~   85 (85)
                      +..|...+.+++|+|.
T Consensus       182 ~~~~~~~v~~v~~~p~  197 (393)
T 4gq1_A          182 GYPLSSPGISVQFRPS  197 (393)
T ss_dssp             EEECSSCEEEEEEETT
T ss_pred             ecCCCCCcEEEEECCC
Confidence            8889999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.78  E-value=3.4e-18  Score=90.64  Aligned_cols=84  Identities=26%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             CceeEEeeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc-----
Q psy7058           1 MGLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ-----   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----   74 (85)
                      ++++++++.|+.+++||++. .+....+.+ |...|.+++|+|++..+++++.|+.|++||+++++.+..+..+.     
T Consensus       218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLRITSRAVRTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             CCEEEEEETTSCEEEEETTTTCCCCEEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             CCEEEEEECCCeEEEEECCCCCcceEEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence            35789999999999999984 455556655 88889999999999999999999999999999988776665332     


Q ss_pred             --cceeEEEEeCC
Q psy7058          75 --KAITSLAFCDF   85 (85)
Q Consensus        75 --~~v~~~~~~~~   85 (85)
                        ..|.+++|+|.
T Consensus       297 ~~~~v~~~~~s~~  309 (380)
T 3iz6_a          297 ELPIVTSVAFSIS  309 (380)
T ss_dssp             SSCSCSEEEECSS
T ss_pred             ccCceEEEEECCC
Confidence              24788999873

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.5e-17  Score=86.85  Aligned_cols=83  Identities=19%  Similarity=0.380  Sum_probs=75.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|+.|++||+.+++....+.. +...+.+++|+|++.++++++.|+.|++||+.+++....+. +...+.++
T Consensus        44 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  121 (369)
T 3zwl_B           44 GDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRV  121 (369)
T ss_dssp             SCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred             CCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEE
Confidence            46899999999999999999998888876 78889999999999999999999999999999998888887 88899999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       122 ~~~~~  126 (369)
T 3zwl_B          122 EFSPC  126 (369)
T ss_dssp             EECTT
T ss_pred             EEccC
Confidence            99873

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.78  E-value=1.3e-17  Score=88.72  Aligned_cols=82  Identities=24%  Similarity=0.445  Sum_probs=73.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |++|++++.|+.|++||+.+++....+.. |...+.+++|+|++..+++++.|+.|++||+++++....+. +...+.++
T Consensus       135 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          135 GKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence            46899999999999999999988888776 88889999999999999999999999999999988776665 56778888


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       213 ~~~~  216 (393)
T 1erj_A          213 AVSP  216 (393)
T ss_dssp             EECS
T ss_pred             EEEC
Confidence            8876

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.78  E-value=9.2e-18  Score=92.43  Aligned_cols=85  Identities=8%  Similarity=0.106  Sum_probs=77.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC----------CCCEEEEEcCCCeEEEEEcCCc-ccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL----------DSKFLLTASSDGVARLWNIETG-EVDKE   69 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~-~~~~~   69 (85)
                      |++|++++.|+.+++||+.+++....+...+...+.+++|+|          ++.++++++.|+.|++|++.++ +.+..
T Consensus       500 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  579 (615)
T 1pgu_A          500 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  579 (615)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             CCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh
Confidence            468999999999999999999988877655778899999999          9999999999999999999987 77788


Q ss_pred             ccccccceeEEEEeCC
Q psy7058          70 YSGHQKAITSLAFCDF   85 (85)
Q Consensus        70 ~~~~~~~v~~~~~~~~   85 (85)
                      +.+|...|.+++|+|.
T Consensus       580 ~~~h~~~v~~l~~s~~  595 (615)
T 1pgu_A          580 LNAHKDGVNNLLWETP  595 (615)
T ss_dssp             TTSSTTCEEEEEEEET
T ss_pred             hhcCccceEEEEEcCC
Confidence            8999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.78  E-value=1.2e-17  Score=89.99  Aligned_cols=82  Identities=20%  Similarity=0.479  Sum_probs=75.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.|++||+.+++....+.. |...+.++.|++++ .+++++.|+.|++||+.+++....+.+|...|.++
T Consensus       132 ~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l  209 (464)
T 3v7d_B          132 DNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL  209 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence            46899999999999999999998888876 88899999999988 89999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|++
T Consensus       210 ~~~~  213 (464)
T 3v7d_B          210 DIVE  213 (464)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.78  E-value=5.3e-18  Score=89.42  Aligned_cols=82  Identities=15%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeee---ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELG---TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      .+++++.|+.|++||+.+++......   ..|...|.+++|+|++.++++++.|+.|++||+.+++.+..+.+|...|++
T Consensus       107 ~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~  186 (357)
T 4g56_B          107 GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC  186 (357)
T ss_dssp             EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence            56788899999999998876543221   237788999999999999999999999999999999999999999999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++|+|
T Consensus       187 v~~s~  191 (357)
T 4g56_B          187 VAACP  191 (357)
T ss_dssp             EEECT
T ss_pred             EEEcc
Confidence            99986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.78  E-value=9.2e-18  Score=88.42  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=67.2

Q ss_pred             eeCCCcEEEeeCCCce---------------e-eeeeeccCCCcEEEEEecCCCCEEEEEcCCCe-EEEEEcCCcccccc
Q psy7058           7 TSADQTARIWNTEDFS---------------L-VRELGTANQRWVWDAAFTLDSKFLLTASSDGV-ARLWNIETGEVDKE   69 (85)
Q Consensus         7 ~~~~~~i~~~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~   69 (85)
                      ++.++.|++||+.++.               + ...+.. |...|.+++|+|++.++++++.|+. |++||+++++.+..
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            6899999999998765               1 444554 8889999999999999999999998 99999999999988


Q ss_pred             cc-c-cccceeEEEEeCC
Q psy7058          70 YS-G-HQKAITSLAFCDF   85 (85)
Q Consensus        70 ~~-~-~~~~v~~~~~~~~   85 (85)
                      +. + |...|++++|+|.
T Consensus       234 ~~~g~h~~~v~~~~~s~~  251 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTD  251 (355)
T ss_dssp             EECTTCCSCEEEEEECTT
T ss_pred             EEcCCCCCcEEEEEECCC
Confidence            88 5 8999999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.77  E-value=1.6e-17  Score=92.40  Aligned_cols=67  Identities=25%  Similarity=0.364  Sum_probs=58.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      |++|++++.|+.|++||..+++....+..      .|...+.+++|+|++.++++++.|+.|++||+.+++.+
T Consensus       202 g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            46899999999999999998888776642      47888999999999999999999999999999876543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.77  E-value=7.4e-18  Score=89.36  Aligned_cols=85  Identities=19%  Similarity=0.286  Sum_probs=71.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc------CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc----
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA------NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY----   70 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----   70 (85)
                      |+++++++.|+.+++||+++++....+...      +...+.+++|+|++.++++++.|+.|++||+..++....+    
T Consensus       261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~  340 (380)
T 3iz6_a          261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ  340 (380)
T ss_dssp             SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC
T ss_pred             CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc
Confidence            468999999999999999998887766431      1234789999999999999999999999999888766655    


Q ss_pred             cccccceeEEEEeCC
Q psy7058          71 SGHQKAITSLAFCDF   85 (85)
Q Consensus        71 ~~~~~~v~~~~~~~~   85 (85)
                      .+|...|.+++|+|.
T Consensus       341 ~~h~~~v~~l~~s~d  355 (380)
T 3iz6_a          341 NSHEGRISCLGLSSD  355 (380)
T ss_dssp             SSCCCCCCEEEECSS
T ss_pred             CCCCCceEEEEECCC
Confidence            578999999999884

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.77  E-value=1.9e-17  Score=89.18  Aligned_cols=83  Identities=22%  Similarity=0.434  Sum_probs=77.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.|++||+.+++....+.. +...+.++.|+|++..+++++.|+.|++||+++++.+..+.+|...|.++
T Consensus       280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  358 (464)
T 3v7d_B          280 GNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL  358 (464)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            46799999999999999999998888876 77889999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|++
T Consensus       359 ~~~~  362 (464)
T 3v7d_B          359 RLSD  362 (464)
T ss_dssp             EECS
T ss_pred             EEcC
Confidence            9875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.77  E-value=1.3e-17  Score=88.21  Aligned_cols=84  Identities=13%  Similarity=0.127  Sum_probs=68.9

Q ss_pred             CceeEEeeCCC----cEEEeeCCCceee----eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc-c
Q psy7058           1 MGLLATTSADQ----TARIWNTEDFSLV----RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY-S   71 (85)
Q Consensus         1 g~~l~~~~~~~----~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~   71 (85)
                      |+++++++.++    .+..|++......    ..+.. +...|.+++|+|+|+++++++.|+.|++||+.+++++..+ .
T Consensus       231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~  309 (365)
T 4h5i_A          231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ  309 (365)
T ss_dssp             TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT
T ss_pred             CCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC
Confidence            35678887776    5788888765432    22333 6778999999999999999999999999999999988874 7


Q ss_pred             ccccceeEEEEeCC
Q psy7058          72 GHQKAITSLAFCDF   85 (85)
Q Consensus        72 ~~~~~v~~~~~~~~   85 (85)
                      +|...|++++|+|.
T Consensus       310 gH~~~V~~v~fSpd  323 (365)
T 4h5i_A          310 AHSFAITEVTISPD  323 (365)
T ss_dssp             SSSSCEEEEEECTT
T ss_pred             cccCCEEEEEECCC
Confidence            89999999999984

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.77  E-value=1.6e-17  Score=97.34  Aligned_cols=83  Identities=22%  Similarity=0.413  Sum_probs=78.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |+++++++.|+.|++||+.+++....+.. |...|.+++|+|++.++++++.|+.|++||+.+++.+..+.+|...|.++
T Consensus       627 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  705 (1249)
T 3sfz_A          627 GQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC  705 (1249)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence            56899999999999999999998888876 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       706 ~~~~  709 (1249)
T 3sfz_A          706 HFTN  709 (1249)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.77  E-value=2.4e-17  Score=85.29  Aligned_cols=83  Identities=16%  Similarity=0.238  Sum_probs=70.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCce----eeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCc---------c
Q psy7058           1 MGLLATTSADQTARIWNTEDFS----LVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETG---------E   65 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~---------~   65 (85)
                      |++|++++.|+.|++||+.++.    ....+.. +...+.+++|+|  ++.++++++.|+.|++||+..+         +
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~  101 (351)
T 3f3f_A           23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN  101 (351)
T ss_dssp             SSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred             CCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence            4689999999999999998763    4444444 788899999999  5999999999999999999876         4


Q ss_pred             ccccccccccceeEEEEeC
Q psy7058          66 VDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        66 ~~~~~~~~~~~v~~~~~~~   84 (85)
                      ....+..|...|.+++|+|
T Consensus       102 ~~~~~~~~~~~v~~~~~~~  120 (351)
T 3f3f_A          102 KLCTLNDSKGSLYSVKFAP  120 (351)
T ss_dssp             EEEEECCCSSCEEEEEECC
T ss_pred             eeeeecccCCceeEEEEcC
Confidence            4667778999999999987

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.77  E-value=1.6e-17  Score=94.03  Aligned_cols=84  Identities=25%  Similarity=0.311  Sum_probs=78.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |+++++++.++.|++||+.+++....+.. +...+.++.|+|++..+++++.++.|++|++.+++....+..|...|.++
T Consensus        25 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~  103 (814)
T 3mkq_A           25 EPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (814)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE
Confidence            46899999999999999999998888876 88889999999999999999999999999999999999999999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       104 ~~s~~  108 (814)
T 3mkq_A          104 AVHPT  108 (814)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            99974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.77  E-value=2.5e-17  Score=88.21  Aligned_cols=84  Identities=15%  Similarity=0.334  Sum_probs=74.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-cccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~v~   78 (85)
                      ++++++++.|+.|++||+++++....+... +...+.+++|+|++.++++++.|+.|++||++.++++..+. .|...|.
T Consensus       182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  261 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPIT  261 (437)
T ss_dssp             CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceE
Confidence            357899999999999999999988888763 56789999999999999999999999999999988888775 6778999


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      +++|+|
T Consensus       262 ~~~~~~  267 (437)
T 3gre_A          262 HVEVCQ  267 (437)
T ss_dssp             EEEECT
T ss_pred             EEEecc
Confidence            997765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.76  E-value=3.8e-17  Score=84.16  Aligned_cols=82  Identities=16%  Similarity=0.400  Sum_probs=69.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.|++ +.|++|++||+.+++....+.. .+...|.+++|+|+++++++++.|+.|++|++.+++.+..+.+|...+.++
T Consensus        37 ~~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~  115 (318)
T 4ggc_A           37 NVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL  115 (318)
T ss_dssp             SEEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             CEEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence            34454 5699999999999988877654 366789999999999999999999999999999999999999998888877


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ++.+
T Consensus       116 ~~~~  119 (318)
T 4ggc_A          116 SWNS  119 (318)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            7654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.3e-18  Score=94.74  Aligned_cols=84  Identities=10%  Similarity=0.086  Sum_probs=72.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCC-CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++|++++.|+++++||+++++....+..... ..+.+++|+|++..+++++.|+.|++||++.+.++..+.+|...|+++
T Consensus       324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sv  403 (524)
T 2j04_B          324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI  403 (524)
T ss_dssp             CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred             eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEE
Confidence            5789999999999999998876655544121 247889999999999999999999999999988888888999999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       404 a~Sp~  408 (524)
T 2j04_B          404 GVSRL  408 (524)
T ss_dssp             ECCSS
T ss_pred             EeCCC
Confidence            99984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.76  E-value=3.3e-17  Score=87.20  Aligned_cols=83  Identities=19%  Similarity=0.368  Sum_probs=69.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCce------------eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS------------LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK   68 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   68 (85)
                      |++|++++.|+.|++||+.+..            ....+.. |...+.++++++++.++++++.|+.|++||+.+++++.
T Consensus       268 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~  346 (393)
T 1erj_A          268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  346 (393)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence            4679999999999999997542            2233333 77789999999999999999999999999999999999


Q ss_pred             cccccccceeEEEEeC
Q psy7058          69 EYSGHQKAITSLAFCD   84 (85)
Q Consensus        69 ~~~~~~~~v~~~~~~~   84 (85)
                      .+.+|...|.+++|++
T Consensus       347 ~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          347 MLQGHRNSVISVAVAN  362 (393)
T ss_dssp             EEECCSSCEEEEEECS
T ss_pred             EECCCCCCEEEEEecC
Confidence            9999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.75  E-value=4.9e-17  Score=83.85  Aligned_cols=84  Identities=14%  Similarity=0.263  Sum_probs=69.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCcee--eeeeeccCCCcEEEEEecCC-------------CCEEEEEcCCCeEEEEEcCCcc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSL--VRELGTANQRWVWDAAFTLD-------------SKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      |.+|++++.|+.+++||+++...  ...+.. |...+.++.|+|+             +..+++++.|+.|++||++.++
T Consensus       113 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          113 GPMLLVASSDGKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             CSEEEEEETTSEEEEEEBCSSSCBCCEEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             CcEEEEEECCCcEEEEEecCCCceeeeeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence            35799999999999999987532  233333 7788999999996             5689999999999999998765


Q ss_pred             ----ccccccccccceeEEEEeCC
Q psy7058          66 ----VDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        66 ----~~~~~~~~~~~v~~~~~~~~   85 (85)
                          ....+.+|...|++++|+|.
T Consensus       192 ~~~~~~~~l~~H~~~V~~v~~sp~  215 (297)
T 2pm7_B          192 QTYVLESTLEGHSDWVRDVAWSPT  215 (297)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCC
T ss_pred             ceEEEEEEecCCCCceEEEEECCC
Confidence                45678889999999999983

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.75  E-value=5.8e-17  Score=84.61  Aligned_cols=80  Identities=19%  Similarity=0.368  Sum_probs=68.9

Q ss_pred             CceeEEeeCCCcEEEeeCCC-ceee-eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTED-FSLV-RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |++|++++.|+.|++||+.+ +... ..+.. +...+.+++|+|++.++++++.|+.|++||+.+++... +..|...|.
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~  131 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVK  131 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEE
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceE
Confidence            47899999999999999987 5544 44444 88889999999999999999999999999999887665 456899999


Q ss_pred             EEEE
Q psy7058          79 SLAF   82 (85)
Q Consensus        79 ~~~~   82 (85)
                      +++|
T Consensus       132 ~~~~  135 (368)
T 3mmy_A          132 TIHW  135 (368)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.75  E-value=2.8e-18  Score=90.34  Aligned_cols=84  Identities=14%  Similarity=0.133  Sum_probs=68.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCc--eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc---cccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDF--SLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE---VDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~   75 (85)
                      |++|++++.|+.|++||+.++  +....+.. |...+.+++|+|++.++++++.|+.|++||+..++   ....+..|..
T Consensus        23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~  101 (377)
T 3dwl_C           23 RTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR  101 (377)
T ss_dssp             SSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred             CCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence            468999999999999999987  55566655 78889999999999999999999999999998876   5666778999


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .|.+++|+|.
T Consensus       102 ~v~~~~~~~~  111 (377)
T 3dwl_C          102 AATFVRWSPN  111 (377)
T ss_dssp             CEEEEECCTT
T ss_pred             ceEEEEECCC
Confidence            9999999873

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.75  E-value=7.8e-17  Score=85.80  Aligned_cols=84  Identities=17%  Similarity=0.269  Sum_probs=73.7

Q ss_pred             CceeEEeeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      ++.+++++.|+.+++||++. ......+.. +...+.++.|+|++..+++++.|+.|++||+++++....+..|...|.+
T Consensus       186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             TTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             CCEEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence            35789999999999999984 444555555 7888999999999999999999999999999999888888889999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       265 ~~~~p~  270 (401)
T 4aez_A          265 VAWCPW  270 (401)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            999883

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.75  E-value=5.9e-17  Score=85.64  Aligned_cols=85  Identities=21%  Similarity=0.312  Sum_probs=75.6

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeecc------------CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTA------------NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      +++|++++.|   +.|++||+.+++....+...            +...+.++.|+|++.++++++.|+.|++||+++++
T Consensus       245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            4678999999   99999999998887777642            56789999999999999999999999999999999


Q ss_pred             cccccc------cc---------------ccceeEEEEeCC
Q psy7058          66 VDKEYS------GH---------------QKAITSLAFCDF   85 (85)
Q Consensus        66 ~~~~~~------~~---------------~~~v~~~~~~~~   85 (85)
                      .+..+.      .|               ...|++++|+|.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          325 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             eeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence            888888      77               899999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.9e-17  Score=86.09  Aligned_cols=84  Identities=25%  Similarity=0.389  Sum_probs=72.4

Q ss_pred             CceeEEeeCCCcEEEeeCC--CceeeeeeeccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCcc--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETGE--VDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~   74 (85)
                      |++|++++.|+.|++||+.  +.+....+.. |...+.+++|+++  +.++++++.|+.|++||+..++  ....+..|.
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  101 (379)
T 3jrp_A           23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS  101 (379)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence            4689999999999999997  4555556655 7888999999987  9999999999999999999886  667777899


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..|.+++|+|.
T Consensus       102 ~~v~~~~~~~~  112 (379)
T 3jrp_A          102 ASVNSVQWAPH  112 (379)
T ss_dssp             SCEEEEEECCG
T ss_pred             cceEEEEeCCC
Confidence            99999999873

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.75  E-value=1.6e-17  Score=87.45  Aligned_cols=83  Identities=20%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             CceeEEeeCCCcEEEeeCC------------------CceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTE------------------DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      ++++++++.|+.+++||+.                  .++....+  .+...+.+++|+|++.++++++.|+.|++||+.
T Consensus       158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            4679999999999999985                  24444444  377889999999999999999999999999999


Q ss_pred             Cccc----cccccccccceeEEEEeCC
Q psy7058          63 TGEV----DKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        63 ~~~~----~~~~~~~~~~v~~~~~~~~   85 (85)
                      +++.    +..+..|...|.+++|+|.
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~  262 (377)
T 3dwl_C          236 APEQPPRALITVKLSQLPLRSLLWANE  262 (377)
T ss_dssp             STTSCEEECCCEECSSSCEEEEEEEET
T ss_pred             CCCCcceeeEeecCCCCceEEEEEcCC
Confidence            8887    7888899999999999873

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.75  E-value=7e-17  Score=82.96  Aligned_cols=81  Identities=14%  Similarity=0.226  Sum_probs=74.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      .+++++.|+.+++||+++++....+.. +...+.++.|+|++ .+++++.|+.|++||+.+++....+..|...|.+++|
T Consensus       197 ~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~  274 (313)
T 3odt_A          197 HFISCSNDGLIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC  274 (313)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE
T ss_pred             eEEEccCCCeEEEEECCchhhhhhhhc-CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEE
Confidence            388999999999999999998888876 77889999999999 5889999999999999999999999989999999999


Q ss_pred             eCC
Q psy7058          83 CDF   85 (85)
Q Consensus        83 ~~~   85 (85)
                      +|.
T Consensus       275 ~~~  277 (313)
T 3odt_A          275 MSN  277 (313)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.74  E-value=1.1e-16  Score=83.93  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=73.8

Q ss_pred             CceeEEeeCCCcEEEeeCC------------------CceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTE------------------DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      ++++++++.|+.+++||+.                  .++....+.. +...+.++.|+|++.++++++.|+.|++||++
T Consensus       154 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          154 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC-CCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            4678999999999999953                  5566666655 77789999999999999999999999999999


Q ss_pred             CccccccccccccceeEEEEeCC
Q psy7058          63 TGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        63 ~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      +++.+..+..|...|.+++|+|.
T Consensus       233 ~~~~~~~~~~~~~~v~~~~~~~~  255 (372)
T 1k8k_C          233 KKMAVATLASETLPLLAVTFITE  255 (372)
T ss_dssp             GTTEEEEEECSSCCEEEEEEEET
T ss_pred             CCceeEEEccCCCCeEEEEEecC
Confidence            99999999999999999999873

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.74  E-value=1.2e-16  Score=85.11  Aligned_cols=83  Identities=17%  Similarity=0.347  Sum_probs=75.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.+++++.|+.|++||+.+++........+...+.+++|+|++.++++++.++.|++||+.+++.+..+..|...|.+++
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  183 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLS  183 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEE
Confidence            45788999999999999999888777765778899999999999999999999999999999999999999999999999


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      |++
T Consensus       184 ~~~  186 (401)
T 4aez_A          184 WNR  186 (401)
T ss_dssp             EET
T ss_pred             ECC
Confidence            975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.74  E-value=1.9e-16  Score=82.14  Aligned_cols=82  Identities=17%  Similarity=0.332  Sum_probs=72.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .++++++.|+.+++||+.+++....+.. +...|.+++|+|++.++++++.|+.|++||+++.+.+..+. +...+.++.
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  263 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALC  263 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeee
Confidence            3578999999999999999988888776 88889999999999999999999999999999998887776 456888888


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       264 ~~~~  267 (340)
T 4aow_A          264 FSPN  267 (340)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            8763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.74  E-value=9.2e-17  Score=90.30  Aligned_cols=82  Identities=23%  Similarity=0.411  Sum_probs=73.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..+++++.|+.|++||+.+.+....+.. |...+.+++|+|++.++++++.|+.|++||+.+++.+..+. +...+.+++
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  609 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALC  609 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEE
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEE
Confidence            3689999999999999999888877776 88889999999999999999999999999999998887776 456899999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       610 ~sp~  613 (694)
T 3dm0_A          610 FSPN  613 (694)
T ss_dssp             ECSS
T ss_pred             EcCC
Confidence            9873

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.74  E-value=9.4e-17  Score=85.41  Aligned_cols=84  Identities=18%  Similarity=0.292  Sum_probs=73.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeee-ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc-cccccc-ee
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY-SGHQKA-IT   78 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~-v~   78 (85)
                      +++++++.|+.|++||+.+++....+. ..+...+.+++|+|++..+++++.|+.|++||+++++.+..+ ..|... +.
T Consensus       145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  224 (402)
T 2aq5_A          145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV  224 (402)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCC
T ss_pred             CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcce
Confidence            478999999999999999999888873 337888999999999999999999999999999999888887 567665 88


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      .+.|+|.
T Consensus       225 ~~~~~~~  231 (402)
T 2aq5_A          225 HAVFVSE  231 (402)
T ss_dssp             EEEECST
T ss_pred             EEEEcCC
Confidence            8888863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.73  E-value=3e-16  Score=81.20  Aligned_cols=84  Identities=19%  Similarity=0.362  Sum_probs=72.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      ++++++++.|+.+++||+.+++  ....+.. +...+.++.|+|++..+++++.++.|++||+++++....+..|...+.
T Consensus       109 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~  187 (337)
T 1gxr_A          109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCCcceeeeccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence            4678999999999999999876  3444444 677899999999999999999999999999999998888988999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       188 ~~~~~~~  194 (337)
T 1gxr_A          188 CIDISND  194 (337)
T ss_dssp             EEEECTT
T ss_pred             EEEECCC
Confidence            9999873

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.73  E-value=6.6e-17  Score=84.00  Aligned_cols=83  Identities=17%  Similarity=0.336  Sum_probs=66.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCc---eeeeeeeccCCCcEEEEEecCCC----CEEEEEcCCCeEEEEEcCCcc----ccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDS----KFLLTASSDGVARLWNIETGE----VDKEY   70 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~----~~~~~   70 (85)
                      ++|++++.|+.|++||+...   +....+.. |...|.+++|+|++    ..+++++.|+.|++|++....    ....+
T Consensus       180 ~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~-h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~  258 (316)
T 3bg1_A          180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL  258 (316)
T ss_dssp             CBEECCBTTSBCCEEEECTTSCEEEEECCBC-CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE
T ss_pred             ceEEEecCCCeEEEEEeCCCCccceeeeccc-CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh
Confidence            47899999999999999754   34445554 88889999999986    789999999999999987631    22345


Q ss_pred             cccccceeEEEEeCC
Q psy7058          71 SGHQKAITSLAFCDF   85 (85)
Q Consensus        71 ~~~~~~v~~~~~~~~   85 (85)
                      ..|...|.+++|+|.
T Consensus       259 ~~~~~~v~~v~~sp~  273 (316)
T 3bg1_A          259 HKFNDVVWHVSWSIT  273 (316)
T ss_dssp             EECSSCEEEEEECTT
T ss_pred             hcCCCcEEEEEEcCC
Confidence            567889999999984

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=1.1e-16  Score=83.83  Aligned_cols=84  Identities=11%  Similarity=0.111  Sum_probs=65.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceee-eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc---cccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLV-RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG---HQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~   76 (85)
                      |.++++|+.|+.|++||+++++.. ..+...|...+.+++|+|++.++++++.+ .|++||++..+....+..   +...
T Consensus       182 g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~  260 (343)
T 3lrv_A          182 SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFK  260 (343)
T ss_dssp             SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC----
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeeccccccccc
Confidence            467899999999999999998877 55655477899999999999999999855 999999998877655543   3344


Q ss_pred             ee--EEEEeCC
Q psy7058          77 IT--SLAFCDF   85 (85)
Q Consensus        77 v~--~~~~~~~   85 (85)
                      +.  +++|+|.
T Consensus       261 ~~~~~~~~~~~  271 (343)
T 3lrv_A          261 TGTVTYDIDDS  271 (343)
T ss_dssp             -CCEEEEECTT
T ss_pred             ccceEEEECCC
Confidence            44  5888763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.73  E-value=7.7e-17  Score=84.15  Aligned_cols=81  Identities=19%  Similarity=0.119  Sum_probs=70.6

Q ss_pred             eEEeeCCCcEEEeeCCCc---eeeeeeeccCCC------------cEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc
Q psy7058           4 LATTSADQTARIWNTEDF---SLVRELGTANQR------------WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK   68 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   68 (85)
                      +++++.|+.+++||+...   .....+.. +..            .+.+++|+|++.++++++.|+.|++||+.+++.+.
T Consensus       231 ~~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (368)
T 3mmy_A          231 FALGSIEGRVAIHYINPPNPAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK  309 (368)
T ss_dssp             EEEEETTSEEEEEESSCSCHHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEecCCCcEEEEecCCCCccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence            899999999999999876   33444444 332            69999999999999999999999999999999999


Q ss_pred             cccccccceeEEEEeCC
Q psy7058          69 EYSGHQKAITSLAFCDF   85 (85)
Q Consensus        69 ~~~~~~~~v~~~~~~~~   85 (85)
                      .+..|...|.+++|+|.
T Consensus       310 ~~~~~~~~v~~~~~s~~  326 (368)
T 3mmy_A          310 TSEQLDQPISACCFNHN  326 (368)
T ss_dssp             ECCCCSSCEEEEEECTT
T ss_pred             EecCCCCCceEEEECCC
Confidence            99999999999999884

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.73  E-value=2e-16  Score=84.15  Aligned_cols=82  Identities=29%  Similarity=0.388  Sum_probs=70.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc---cccce
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG---HQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~v   77 (85)
                      +++|++++.|+.|++||+.+++....+.. |...+.+++|+|++..+++++.|+.|++||+++++....+..   +...+
T Consensus       151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          151 GEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence            46899999999999999999988888876 888899999999999999999999999999999888777763   45566


Q ss_pred             eEEEEe
Q psy7058          78 TSLAFC   83 (85)
Q Consensus        78 ~~~~~~   83 (85)
                      .+++|.
T Consensus       230 ~~~~~~  235 (420)
T 3vl1_A          230 NSIALF  235 (420)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            666653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.73  E-value=8.8e-17  Score=84.75  Aligned_cols=85  Identities=13%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCC--CcEEEEEecC------------------------------------
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQ--RWVWDAAFTL------------------------------------   42 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~------------------------------------   42 (85)
                      +.+|++++.|++|++||+.+++.+..+...+.  ..+.+++|+|                                    
T Consensus       193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~  272 (356)
T 2w18_A          193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS  272 (356)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred             CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence            36789999999999999999998887764211  1222222222                                    


Q ss_pred             ---------CCC------------EEEEEcCCCeEEEEEcCCcccccccccccccee-EEEEeCC
Q psy7058          43 ---------DSK------------FLLTASSDGVARLWNIETGEVDKEYSGHQKAIT-SLAFCDF   85 (85)
Q Consensus        43 ---------~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~   85 (85)
                               +|+            .+++++.|++|++||+.+++.+.++.+|...+. .++|+|.
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             EEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence                     232            356777899999999999999999988877665 5899984

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.73  E-value=2e-16  Score=89.61  Aligned_cols=83  Identities=20%  Similarity=0.399  Sum_probs=75.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc-cccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG-EVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~v~~   79 (85)
                      |++|++++.|+.|++||+.+++....+.. +...+.+++|+|++..+++++.|+.|++|++..+ .....+..|...|.+
T Consensus        67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  145 (814)
T 3mkq_A           67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (814)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence            46799999999999999999998888876 7888999999999999999999999999999876 566777889999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++|+|
T Consensus       146 ~~~~p  150 (814)
T 3mkq_A          146 VAFNP  150 (814)
T ss_dssp             EEEET
T ss_pred             EEEEc
Confidence            99997

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.72  E-value=2.6e-16  Score=84.55  Aligned_cols=81  Identities=26%  Similarity=0.449  Sum_probs=74.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.|++||+.+++....+.. |...+.++.+  ++..+++++.|+.|++||+.+++....+..|...|.++
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l  219 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL  219 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence            46799999999999999999988888876 8888999988  78999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|++
T Consensus       220 ~~~~  223 (435)
T 1p22_A          220 RFNN  223 (435)
T ss_dssp             ECCT
T ss_pred             EEcC
Confidence            9875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.72  E-value=5.2e-16  Score=80.32  Aligned_cols=83  Identities=19%  Similarity=0.329  Sum_probs=73.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.+++||+.+++....+.. +...+.++.|+|++..+++++.++.+++||+++++....+. +...+.++
T Consensus       153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~  230 (337)
T 1gxr_A          153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSL  230 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEE
Confidence            46789999999999999999988888776 77789999999999999999999999999999988777765 67889999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       231 ~~s~~  235 (337)
T 1gxr_A          231 GYCPT  235 (337)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99873

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.72  E-value=3.6e-16  Score=84.02  Aligned_cols=83  Identities=20%  Similarity=0.336  Sum_probs=71.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCc---eeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCC-ccccccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDF---SLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIET-GEVDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~   76 (85)
                      .++++++.|+.|++||+++.   +....+.. +...+++++|+|++. .+++++.++.|++||++. ..++..+..|...
T Consensus       245 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~  323 (430)
T 2xyi_A          245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE  323 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred             CEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence            56889999999999999976   45555554 778899999999886 688999999999999997 4567788889999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus       324 v~~i~~sp~  332 (430)
T 2xyi_A          324 IFQVQWSPH  332 (430)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            999999984

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.72  E-value=5.8e-17  Score=89.27  Aligned_cols=83  Identities=10%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceee-eeeeccCCCcEEEE--EecCCC-CEEEEEcCCCeEEEEEcCCcccccccccccc--
Q psy7058           2 GLLATTSADQTARIWNTEDFSLV-RELGTANQRWVWDA--AFTLDS-KFLLTASSDGVARLWNIETGEVDKEYSGHQK--   75 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--   75 (85)
                      +.|++|+.|+.|++||+.++... ..+.. |...|.++  .+++++ .++++++.|++|++||++++++...+.+|..  
T Consensus       278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~  356 (524)
T 2j04_B          278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGS  356 (524)
T ss_dssp             SEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCC
T ss_pred             CeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccC
Confidence            46899999999999999876433 34444 88889999  578887 8999999999999999999888777766653  


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .|.+++|+|.
T Consensus       357 ~v~~v~fsp~  366 (524)
T 2j04_B          357 NLVPVVYCPQ  366 (524)
T ss_dssp             SCCCEEEETT
T ss_pred             cccceEeCCC
Confidence            4788999983

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.72  E-value=1.8e-16  Score=82.82  Aligned_cols=84  Identities=21%  Similarity=0.407  Sum_probs=71.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeee--ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc------
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELG--TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG------   72 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------   72 (85)
                      ++++++++.|+.|++||+.+++....+.  ..+...+.++.|+|++..+++++.|+.|++||+++++....+..      
T Consensus       128 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (366)
T 3k26_A          128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP  207 (366)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG
T ss_pred             CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC
Confidence            4679999999999999999998887773  23778899999999999999999999999999998876655544      


Q ss_pred             ----------------------cccceeEEEEeC
Q psy7058          73 ----------------------HQKAITSLAFCD   84 (85)
Q Consensus        73 ----------------------~~~~v~~~~~~~   84 (85)
                                            |...|.+++|++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  241 (366)
T 3k26_A          208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLG  241 (366)
T ss_dssp             GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEET
T ss_pred             CCCcccccceeeccCccccccCCcceEEEEEEcC
Confidence                                  888899988863

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.72  E-value=5.4e-16  Score=80.23  Aligned_cols=83  Identities=18%  Similarity=0.352  Sum_probs=68.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCc---------eeeeeeeccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDF---------SLVRELGTANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      +++|++++.|+.|++||+.++         +....+.. +...+.++.|+|+  +.++++++.|+.|++||+++++.+..
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            468999999999999999876         33445544 7788999999999  99999999999999999988876554


Q ss_pred             cc-------------ccccceeEEEEeC
Q psy7058          70 YS-------------GHQKAITSLAFCD   84 (85)
Q Consensus        70 ~~-------------~~~~~v~~~~~~~   84 (85)
                      +.             .+...+.+++|+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCP  177 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECC
T ss_pred             ccccccccccccccCCcccceeEEEecc
Confidence            43             4667888888876

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.5e-16  Score=90.97  Aligned_cols=81  Identities=15%  Similarity=0.069  Sum_probs=66.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCce---------------------------------------------eeeeeeccCCCcE
Q psy7058           1 MGLLATTSADQTARIWNTEDFS---------------------------------------------LVRELGTANQRWV   35 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~---------------------------------------------~~~~~~~~~~~~~   35 (85)
                      |++||+++.|++|++||+.+++                                             +...+.. |...|
T Consensus       500 g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-h~~~V  578 (902)
T 2oaj_A          500 TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA-NKGKT  578 (902)
T ss_dssp             TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC-CSCSE
T ss_pred             CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc-CCCcE
Confidence            5789999999999999987652                                             2334444 78889


Q ss_pred             EEEEecCCCCEEEEEcCCCeEEEEEcCCcccc-----cccc-ccccceeEEEEe
Q psy7058          36 WDAAFTLDSKFLLTASSDGVARLWNIETGEVD-----KEYS-GHQKAITSLAFC   83 (85)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~-~~~~~v~~~~~~   83 (85)
                      ++++|+|+| ++++++.|+.|++||+.....+     ..+. +|...|++++|+
T Consensus       579 ~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          579 SAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV  631 (902)
T ss_dssp             EEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred             EEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence            999999999 9999999999999999776543     3454 789999999999

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.71  E-value=5.5e-16  Score=81.91  Aligned_cols=81  Identities=19%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCC----cccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIET----GEVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~   75 (85)
                      ++++++++.|+.+++||+. ++....+.. +...+.+++|+|++. .+++++.|+.|++||+++    +..+..+ .|..
T Consensus       175 ~~~l~~~~~d~~i~i~d~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~  251 (383)
T 3ei3_B          175 RQMLATGDSTGRLLLLGLD-GHEIFKEKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK  251 (383)
T ss_dssp             TTEEEEEETTSEEEEEETT-SCEEEEEEC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS
T ss_pred             CCEEEEECCCCCEEEEECC-CCEEEEecc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC
Confidence            4679999999999999984 667777766 778899999999998 899999999999999987    4444445 5899


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      .|.+++|+|
T Consensus       252 ~v~~~~~s~  260 (383)
T 3ei3_B          252 PVNAAYFNP  260 (383)
T ss_dssp             CEEEEEECT
T ss_pred             ceEEEEEcC
Confidence            999999998

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.6e-16  Score=86.73  Aligned_cols=82  Identities=11%  Similarity=0.233  Sum_probs=65.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccC----CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc-------ccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTAN----QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV-------DKE   69 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~   69 (85)
                      |++||+++.|+.+++||..+  ....+. .+    ...+.+++|+|+|+++++++.||.|++|++..++.       +.+
T Consensus        97 G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~t  173 (588)
T 2j04_A           97 DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESS  173 (588)
T ss_dssp             SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeee
Confidence            57899999999999999654  333333 12    12599999999999999999999999999988753       345


Q ss_pred             c----cccccceeEEEEeCC
Q psy7058          70 Y----SGHQKAITSLAFCDF   85 (85)
Q Consensus        70 ~----~~~~~~v~~~~~~~~   85 (85)
                      +    .+|...|.+++|+|.
T Consensus       174 i~~~~~gh~~~V~sVawSPd  193 (588)
T 2j04_A          174 IRLSDAGSKDWVTHIVWYED  193 (588)
T ss_dssp             EECSCTTCCCCEEEEEEETT
T ss_pred             eecccccccccEEEEEEcCC
Confidence            4    567789999999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.6e-16  Score=90.35  Aligned_cols=82  Identities=10%  Similarity=0.076  Sum_probs=71.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc-----------cc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD-----------KE   69 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~   69 (85)
                      |++|++++.|+.|++||+.+++....+.  +...+.+++|+|++.++++++.|+.|++||+..++..           ..
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~  146 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF  146 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence            4579999999999999999988877775  4567999999999999999999999999999877643           33


Q ss_pred             ccccccceeEEEEeC
Q psy7058          70 YSGHQKAITSLAFCD   84 (85)
Q Consensus        70 ~~~~~~~v~~~~~~~   84 (85)
                      +.+|...|.+++|+|
T Consensus       147 ~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A          147 PAARLSPIVSIQWNP  161 (902)
T ss_dssp             SSSCCCCCCEEEEET
T ss_pred             cccCCCCeEEEEEcc
Confidence            467889999999998

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.71  E-value=3.7e-16  Score=81.90  Aligned_cols=84  Identities=15%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc--cccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK--EYSGHQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~   76 (85)
                      |+++++++.|+.|++||+.+++  ....+.. +...+.+++|+|++.++++++.|+.|++||+..++...  .+..|...
T Consensus        20 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~   98 (372)
T 1k8k_C           20 RTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA   98 (372)
T ss_dssp             SSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred             CCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc
Confidence            4678999999999999998876  6666665 78889999999999999999999999999998776433  34568889


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus        99 v~~~~~~~~  107 (372)
T 1k8k_C           99 ARCVRWAPN  107 (372)
T ss_dssp             EEEEEECTT
T ss_pred             eeEEEECCC
Confidence            999999873

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.71  E-value=4e-16  Score=85.99  Aligned_cols=83  Identities=10%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             CceeEEeeC-CCcEEEeeCCCceee-eeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc-cccce
Q psy7058           1 MGLLATTSA-DQTARIWNTEDFSLV-RELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-HQKAI   77 (85)
Q Consensus         1 g~~l~~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~v   77 (85)
                      ++++++++. |+.+++||+.+++.. ..+.. +...+.+++|+|++.++++++.|+.|++|++.+++.+..+.+ |...|
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  534 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  534 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             CCEEEEeecCCCeEEEEECCCccccccccCC-ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence            467889999 999999999987665 33333 778899999999999999999999999999999999888887 99999


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      ++++|+|
T Consensus       535 ~~~~~sp  541 (615)
T 1pgu_A          535 NAISWKP  541 (615)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999998

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6.1e-16  Score=82.03  Aligned_cols=83  Identities=20%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.+++||+.+++....+.. +...+.++.|+|++ .+++++.++.|++||+++++.+..+..|...+.++
T Consensus       259 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  336 (425)
T 1r5m_A          259 NKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG  336 (425)
T ss_dssp             TTEEEEEETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE
Confidence            46789999999999999999888887766 77789999999999 99999999999999999999888888899999999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       337 ~~s~~  341 (425)
T 1r5m_A          337 RISQD  341 (425)
T ss_dssp             EECTT
T ss_pred             EEcCC
Confidence            99873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.70  E-value=1e-15  Score=79.77  Aligned_cols=83  Identities=12%  Similarity=0.212  Sum_probs=71.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC---CCCEEEEEcCCCeEEEEEcCCcccccccc-----c
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL---DSKFLLTASSDGVARLWNIETGEVDKEYS-----G   72 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~   72 (85)
                      ++++++++.|+.+++||+++++......  +...+.++.|+|   ++..+++++.++.|++||++.++....+.     .
T Consensus       180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  257 (357)
T 3i2n_A          180 ERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA  257 (357)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC
T ss_pred             CCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC
Confidence            4678999999999999999888755433  667899999999   89999999999999999999887776665     8


Q ss_pred             cccceeEEEEeCC
Q psy7058          73 HQKAITSLAFCDF   85 (85)
Q Consensus        73 ~~~~v~~~~~~~~   85 (85)
                      |...|.+++|+|.
T Consensus       258 ~~~~v~~~~~~~~  270 (357)
T 3i2n_A          258 HKSTVWQVRHLPQ  270 (357)
T ss_dssp             CSSCEEEEEEETT
T ss_pred             CcCCEEEEEECCC
Confidence            9999999999984

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6.9e-16  Score=80.90  Aligned_cols=83  Identities=20%  Similarity=0.239  Sum_probs=70.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCcc--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETGE--VDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~   74 (85)
                      +++|++++.|+.|++||+.+++  ....+.. +...+.+++|+|+  +..+++++.|+.|++||+....  ....+..|.
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence            4689999999999999999876  4444444 7788999999999  9999999999999999998774  334566788


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..|.+++|+|
T Consensus       148 ~~v~~~~~~~  157 (379)
T 3jrp_A          148 IGVNSASWAP  157 (379)
T ss_dssp             TCEEEEEECC
T ss_pred             CceEEEEEcC
Confidence            9999999987

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.70  E-value=5.3e-16  Score=82.27  Aligned_cols=82  Identities=16%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-----------------
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-----------------   65 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------   65 (85)
                      ++++++.|+.+++||+.+++....+.. +...+.++.|+|++.++++++.++.|++|++.+++                 
T Consensus       302 ~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  380 (425)
T 1r5m_A          302 KVISCSMDGSVRLWSLKQNTLLALSIV-DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPL  380 (425)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEC-TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CE
T ss_pred             EEEEEeCCCcEEEEECCCCcEeEeccc-CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcc
Confidence            689999999999999999988888776 77789999999999999999999999999999887                 


Q ss_pred             ---cccccccccc--ceeEEEEeCC
Q psy7058          66 ---VDKEYSGHQK--AITSLAFCDF   85 (85)
Q Consensus        66 ---~~~~~~~~~~--~v~~~~~~~~   85 (85)
                         .+..+..|..  .|.+++|+|.
T Consensus       381 ~~~~~~~~~~~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          381 PIPLYASYQSSQDNDYIFDLSWNCA  405 (425)
T ss_dssp             ECCEEEEECCTTCCCCEEEEEECTT
T ss_pred             cchhhhhhcCcccCCceEEEEccCC
Confidence               7788888866  9999999874

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.3e-15  Score=78.27  Aligned_cols=83  Identities=24%  Similarity=0.299  Sum_probs=71.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc---cccccccccccce
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG---EVDKEYSGHQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~v   77 (85)
                      ++++++++.|+.+++||+.+++....+.. +...+.+++|+|++..+++++.++.+++|++...   +....+..|...|
T Consensus        29 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i  107 (313)
T 3odt_A           29 DSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV  107 (313)
T ss_dssp             TTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred             CCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence            46899999999999999998887777776 7788999999999999999999999999998754   4566777889999


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      .+++|++
T Consensus       108 ~~~~~~~  114 (313)
T 3odt_A          108 CSLSFQD  114 (313)
T ss_dssp             EEEEEET
T ss_pred             EEEEecC
Confidence            9998854

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.70  E-value=5.1e-16  Score=83.48  Aligned_cols=84  Identities=18%  Similarity=0.216  Sum_probs=68.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +++|++++.|+.|++||+.+......... .....+.++.|++++.++++++.++.|++||++ ++.+..+.+|...|.+
T Consensus       177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~  255 (435)
T 4e54_B          177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH  255 (435)
T ss_dssp             TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred             CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence            46899999999999999986544332222 133457889999999999999999999999986 5667788899999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       256 v~~~p~  261 (435)
T 4e54_B          256 VALNPC  261 (435)
T ss_dssp             EEECTT
T ss_pred             eeecCC
Confidence            999873

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.70  E-value=9.9e-16  Score=82.37  Aligned_cols=81  Identities=22%  Similarity=0.465  Sum_probs=68.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      |+++++++.|+.|++||+.+++....+.. |...+.++.++  +..+++++.|+.|++||+.+++....+.+|...|.++
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  205 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM  205 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE
Confidence            46788999999999999988888877776 77788888886  6688888999999999998888888888888888888


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|++
T Consensus       206 ~~~~  209 (445)
T 2ovr_B          206 HLHE  209 (445)
T ss_dssp             EEET
T ss_pred             EecC
Confidence            8764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=3.1e-16  Score=89.09  Aligned_cols=84  Identities=25%  Similarity=0.389  Sum_probs=72.5

Q ss_pred             CceeEEeeCCCcEEEeeCC--CceeeeeeeccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCcc--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETGE--VDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~   74 (85)
                      |+++++++.|+.|++||+.  +++....+.. |...|.+++|+++  +..+++++.|+.|++||+.+++  ....+..|.
T Consensus        21 g~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~   99 (753)
T 3jro_A           21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS   99 (753)
T ss_dssp             SCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence            4679999999999999987  4455556655 8888999999987  9999999999999999999876  667778899


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..|.+++|+|.
T Consensus       100 ~~V~~v~~sp~  110 (753)
T 3jro_A          100 ASVNSVQWAPH  110 (753)
T ss_dssp             SCEEEEEECCG
T ss_pred             CCeEEEEECCC
Confidence            99999999873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.70  E-value=1.6e-16  Score=82.84  Aligned_cols=85  Identities=20%  Similarity=0.321  Sum_probs=70.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeee----ccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCCc-----------
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELG----TANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIETG-----------   64 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-----------   64 (85)
                      ++++++++.|+.+++||+++++....+.    ..+...+.++.|+|++. ++++++.|+.|++||++.+           
T Consensus       224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~  303 (357)
T 3i2n_A          224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGI  303 (357)
T ss_dssp             CCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSC
T ss_pred             CCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCC
Confidence            4678999999999999998776654443    13778899999999998 8999999999999999754           


Q ss_pred             --------cccccccccccceeEEEEeCC
Q psy7058          65 --------EVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        65 --------~~~~~~~~~~~~v~~~~~~~~   85 (85)
                              +.+..+..|...|.+++|+|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  332 (357)
T 3i2n_A          304 EMGVAGSVSLLQNVTLSTQPISSLDWSPD  332 (357)
T ss_dssp             CCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred             ccccccccceeeccccCCCCeeEEEEcCC
Confidence                    245567788999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.69  E-value=1.1e-15  Score=89.74  Aligned_cols=84  Identities=26%  Similarity=0.392  Sum_probs=76.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |+++++++.|+.|++||+.+++....+.. +...+.++.|++  ++..+++++.|+.|++||+.+++....+.+|...|.
T Consensus       669 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~  747 (1249)
T 3sfz_A          669 DSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN  747 (1249)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence            46899999999999999999999888877 888899999999  556899999999999999999999999999999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       748 ~~~~sp~  754 (1249)
T 3sfz_A          748 HCRFSPD  754 (1249)
T ss_dssp             EEEECSS
T ss_pred             EEEEecC
Confidence            9999873

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.69  E-value=9.7e-16  Score=81.01  Aligned_cols=83  Identities=23%  Similarity=0.264  Sum_probs=73.8

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeecc--C---CCcEEEEEecCCCCEEEEEcCC---CeEEEEEcCCccccccccc--
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTA--N---QRWVWDAAFTLDSKFLLTASSD---GVARLWNIETGEVDKEYSG--   72 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~--   72 (85)
                      ++++++.|+.+++||+++++....+...  +   ...+.+++|+|++.++++++.+   +.|++||+++++.+..+..  
T Consensus       199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~  278 (397)
T 1sq9_A          199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  278 (397)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence            6889999999999999998888777641  4   6779999999999999999999   9999999999998888888  


Q ss_pred             -----------cccceeEEEEeCC
Q psy7058          73 -----------HQKAITSLAFCDF   85 (85)
Q Consensus        73 -----------~~~~v~~~~~~~~   85 (85)
                                 |...|.+++|+|.
T Consensus       279 ~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          279 HSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             -------CCBSBSSCEEEEEECSS
T ss_pred             ccccccccccccCCcEEEEEECCC
Confidence                       9999999999873

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.69  E-value=3.9e-16  Score=83.60  Aligned_cols=72  Identities=19%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             ceeEEe--eCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc
Q psy7058           2 GLLATT--SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         2 ~~l~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      +.++++  ..|+.|++||..+++.+..+.+ |...|.+++|+|+|.++++++.|++|++||+.+..+......+.
T Consensus       333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~  406 (420)
T 4gga_A          333 KELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREK  406 (420)
T ss_dssp             TEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-------
T ss_pred             CeEEEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhcc
Confidence            345544  3789999999999999998887 88899999999999999999999999999998766555544333

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.69  E-value=6.3e-16  Score=83.53  Aligned_cols=81  Identities=12%  Similarity=0.080  Sum_probs=64.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc-------cc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG-------HQ   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~   74 (85)
                      +++++++.|+.+++||++++........ +...+.+++|+|+|.++++++.|+.|++||++ ++....+..       |.
T Consensus       163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~  240 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVTETVKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHP  240 (434)
T ss_dssp             TEEEEEETTSCEEEEEESSSEEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSC
T ss_pred             CEEEEEECCCeEEEEEcCCCcceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCc
Confidence            5789999999999999998866555444 66789999999999999999999999999998 433333322       23


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+.+++|++
T Consensus       241 ~~v~~v~w~~  250 (434)
T 2oit_A          241 VRVLDVLWIG  250 (434)
T ss_dssp             EEEEEEEEEE
T ss_pred             eeEEEEEEec
Confidence            3788888875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.69  E-value=5.2e-16  Score=79.93  Aligned_cols=59  Identities=22%  Similarity=0.302  Sum_probs=53.4

Q ss_pred             EeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         6 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      +++.|+.|++||+.+++.+..+.+ |...|++++|+|++.++++++.|+.|++||+.+..
T Consensus       259 sg~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          259 HGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             ECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEcCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            345899999999999999998887 88899999999999999999999999999997653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.1e-16  Score=83.90  Aligned_cols=84  Identities=19%  Similarity=0.338  Sum_probs=73.6

Q ss_pred             ceeEEeeCCC---cEEEeeCCCc-eeeeeeeccCCCcEEEEEecC-CCCEEEEEcCCCeEEEEEcCCccccccccccccc
Q psy7058           2 GLLATTSADQ---TARIWNTEDF-SLVRELGTANQRWVWDAAFTL-DSKFLLTASSDGVARLWNIETGEVDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~~~~~~~---~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   76 (85)
                      .++++++.|+   .|++||++++ .+...+...+...+.+++|+| ++.++++++.|+.|++||+.+++.+..+..|...
T Consensus       228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~  307 (416)
T 2pm9_A          228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW  307 (416)
T ss_dssp             TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred             CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence            4788999998   9999999986 455555513778899999999 8999999999999999999999999999999999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus       308 v~~~~~s~~  316 (416)
T 2pm9_A          308 CFKTKFAPE  316 (416)
T ss_dssp             CCCEEECTT
T ss_pred             eEEEEECCC
Confidence            999999873

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2.8e-15  Score=78.32  Aligned_cols=83  Identities=16%  Similarity=0.273  Sum_probs=72.5

Q ss_pred             CceeEEeeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      ++++++++.|+.|++||+.+ .+....+.. +...+.++.|+|++.++++++.++.|++||+++++....+. +...+..
T Consensus       187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~  264 (369)
T 3zwl_B          187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNT  264 (369)
T ss_dssp             GCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCcee
Confidence            35789999999999999998 666666666 77889999999999999999999999999999988887777 7788888


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       265 ~~~~~~  270 (369)
T 3zwl_B          265 AVITPL  270 (369)
T ss_dssp             EEECSS
T ss_pred             EEecCC
Confidence            888763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.68  E-value=1.3e-15  Score=81.48  Aligned_cols=84  Identities=17%  Similarity=0.247  Sum_probs=66.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCc-eeeeee------eccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCccc----cc
Q psy7058           1 MGLLATTSADQTARIWNTEDF-SLVREL------GTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEV----DK   68 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~-~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~----~~   68 (85)
                      |++++++ .|+.|++||+.+. +....+      ...+...+.+++|+|++ ..+++++.|+.|++||+++++.    ..
T Consensus       189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  267 (447)
T 3dw8_B          189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSK  267 (447)
T ss_dssp             SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCE
T ss_pred             CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceee
Confidence            4678888 7999999999844 333322      12377789999999998 9999999999999999998876    56


Q ss_pred             ccccccc------------ceeEEEEeCC
Q psy7058          69 EYSGHQK------------AITSLAFCDF   85 (85)
Q Consensus        69 ~~~~~~~------------~v~~~~~~~~   85 (85)
                      .+..|..            .|.+++|+|.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (447)
T 3dw8_B          268 LFEEPEDPSNRSFFSEIISSISDVKFSHS  296 (447)
T ss_dssp             EECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred             EeccCCCccccccccccCceEEEEEECCC
Confidence            6777765            8999999874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.68  E-value=4.9e-16  Score=81.97  Aligned_cols=59  Identities=15%  Similarity=0.051  Sum_probs=50.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCc-EEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRW-VWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      .++++++.|++|++||+.+++....+.+ |... +..++|+|+|+++++++.|++|++||+
T Consensus       296 ~~lASgS~DgTIkIWDl~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          296 HCAAAILTSGTIAIWDLLLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TEEEEEETTSCEEEEETTTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            3578999999999999999999998876 5443 456899999999999999999999995

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.68  E-value=2.5e-15  Score=79.38  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec--cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +++++++.|+.+++||+.+ .....+..  .+...+.+++|+|++..+++++.|+.|++||+ .++.+..+..|...|.+
T Consensus       132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~  209 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH  209 (383)
T ss_dssp             EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred             CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence            5789999999999999986 44444433  13467999999999999999999999999999 57778888889999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       210 ~~~~~~  215 (383)
T 3ei3_B          210 AEFNPR  215 (383)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.67  E-value=1.7e-15  Score=79.88  Aligned_cols=64  Identities=30%  Similarity=0.342  Sum_probs=58.3

Q ss_pred             CceeEEeeCCCc-EEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           1 MGLLATTSADQT-ARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         1 g~~l~~~~~~~~-i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      |++|++++.|+. +++||+.+++....+..+ |...+.+++|+|++.++++++.|+.|++||+...
T Consensus       207 g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          207 SDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             SSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            568999999998 999999999999888743 7788999999999999999999999999999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.67  E-value=3.8e-15  Score=77.30  Aligned_cols=83  Identities=30%  Similarity=0.560  Sum_probs=66.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCce-----eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS-----LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   75 (85)
                      +++|++|+.|+.|++||+.+.+     +...+.+ |...|.++.|+|++.++++++.|+.+++|+............+..
T Consensus        51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~  129 (340)
T 4aow_A           51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK  129 (340)
T ss_dssp             TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCC
Confidence            3689999999999999987643     2334444 788899999999999999999999999999988776666665666


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      .+..+.+++
T Consensus       130 ~~~~~~~~~  138 (340)
T 4aow_A          130 DVLSVAFSS  138 (340)
T ss_dssp             CEEEEEECT
T ss_pred             ceeEEEEee
Confidence            666655544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.6e-15  Score=80.98  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=60.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ++|++++.|+.|++||+.+++....+...+...+.+++|+ ++.++++++.|+.|++||+.+++.+..+.
T Consensus       211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          211 QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            5799999999999999998888777554488889999999 99999999999999999999888766654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.67  E-value=6e-16  Score=83.22  Aligned_cols=83  Identities=17%  Similarity=0.231  Sum_probs=67.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCCcccccc---ccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIETGEVDKE---YSGHQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~   76 (85)
                      +++|++++.|+.|++||+.. +.+..+.. |...|.+++|+|++. ++++++.|+.|++||++..+....   ..+|...
T Consensus       221 ~~~l~~g~~dg~i~~wd~~~-~~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~  298 (435)
T 4e54_B          221 SRMVVTGDNVGNVILLNMDG-KELWNLRM-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP  298 (435)
T ss_dssp             TTEEEEECSSSBEEEEESSS-CBCCCSBC-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSC
T ss_pred             CCEEEEEeCCCcEeeeccCc-ceeEEEec-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccc
Confidence            46789999999999999874 45555555 788899999999875 788999999999999987764433   3568899


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |++++|+|.
T Consensus       299 v~~~~~spd  307 (435)
T 4e54_B          299 VNAACFSPD  307 (435)
T ss_dssp             EEECCBCTT
T ss_pred             ccceeECCC
Confidence            999999873

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.67  E-value=2.6e-16  Score=85.02  Aligned_cols=85  Identities=11%  Similarity=0.051  Sum_probs=67.6

Q ss_pred             CceeE----EeeCCCcEEEeeCCCc--------eeeeee--eccCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCcc
Q psy7058           1 MGLLA----TTSADQTARIWNTEDF--------SLVREL--GTANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~----~~~~~~~i~~~d~~~~--------~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      |++|+    +++.|+.|++||+.+.        ++...+  ...|...+.+++|+|+ +..+++++.|+.|++||++++.
T Consensus       104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~  183 (434)
T 2oit_A          104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV  183 (434)
T ss_dssp             SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred             CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence            45677    7889999999998765        221112  1236778999999997 8899999999999999999887


Q ss_pred             ccccccccccceeEEEEeCC
Q psy7058          66 VDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        66 ~~~~~~~~~~~v~~~~~~~~   85 (85)
                      .......|...|.+++|+|.
T Consensus       184 ~~~~~~~~~~~v~~v~wspd  203 (434)
T 2oit_A          184 KVCATLPSTVAVTSVCWSPK  203 (434)
T ss_dssp             EEEEEECGGGCEEEEEECTT
T ss_pred             ceeeccCCCCceeEEEEcCC
Confidence            66666678899999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.67  E-value=3.5e-15  Score=80.20  Aligned_cols=81  Identities=27%  Similarity=0.555  Sum_probs=73.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.+++||+.+++....+.. +...+.++.+  ++..+++++.|+.|++||+++++.+..+.+|...|.++
T Consensus       266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~  342 (435)
T 1p22_A          266 DKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI  342 (435)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEEcC-CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE
Confidence            46899999999999999999998888876 7778999888  57899999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|++
T Consensus       343 ~~~~  346 (435)
T 1p22_A          343 RFDN  346 (435)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            8854

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.66  E-value=2.1e-15  Score=78.42  Aligned_cols=82  Identities=10%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCce---eeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEc-CCccccccccc--c
Q psy7058           1 MGLLATTSADQTARIWNTEDFS---LVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNI-ETGEVDKEYSG--H   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~--~   73 (85)
                      +++|++++.|+.|++||+.++.   ....... +...+.+++|+|++. .+++++.++.|++|++ ..++. ..+..  |
T Consensus        23 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~  100 (342)
T 1yfq_A           23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEA  100 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCC
T ss_pred             CCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCC
Confidence            4678999999999999998766   2333333 778899999999999 9999999999999999 76654 66777  9


Q ss_pred             ccceeEEEEeC
Q psy7058          74 QKAITSLAFCD   84 (85)
Q Consensus        74 ~~~v~~~~~~~   84 (85)
                      ...|.+++|+|
T Consensus       101 ~~~v~~l~~~~  111 (342)
T 1yfq_A          101 NLGICRICKYG  111 (342)
T ss_dssp             CSCEEEEEEET
T ss_pred             CCceEEEEeCC
Confidence            99999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.4e-16  Score=85.27  Aligned_cols=73  Identities=15%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEec----CCCCEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT----LDSKFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      +++|++++.|+.|++||+++++....+...+...+.++.++    +++.++++++.|+.|++||+++++.+..+.+|
T Consensus       226 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  302 (437)
T 3gre_A          226 CCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS  302 (437)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS
T ss_pred             CCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC
Confidence            46799999999999999999988887764466789999665    46779999999999999999988766655543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.66  E-value=1.2e-15  Score=81.65  Aligned_cols=64  Identities=17%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCce-----------eeeeeeccCC------------CcEEEEEecCCC--CEEEEEcCCCe
Q psy7058           1 MGLLATTSADQTARIWNTEDFS-----------LVRELGTANQ------------RWVWDAAFTLDS--KFLLTASSDGV   55 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~-----------~~~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~~~~~   55 (85)
                      |++|++|+.|+.|++||+.+++           ....+.. |.            ..|.+++|+|++  ..+++++.|+.
T Consensus        40 g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~  118 (447)
T 3dw8_B           40 GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT  118 (447)
T ss_dssp             SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred             CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence            5789999999999999998766           3455554 65            779999999998  78999999999


Q ss_pred             EEEEEcCCcc
Q psy7058          56 ARLWNIETGE   65 (85)
Q Consensus        56 i~~~~~~~~~   65 (85)
                      |++|++..+.
T Consensus       119 i~iw~~~~~~  128 (447)
T 3dw8_B          119 IKLWKISERD  128 (447)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEeccccc
Confidence            9999987643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.66  E-value=3e-15  Score=80.47  Aligned_cols=82  Identities=18%  Similarity=0.384  Sum_probs=68.6

Q ss_pred             eeEEeeCCCcEEEeeCCC-ceeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCC--------------ccc
Q psy7058           3 LLATTSADQTARIWNTED-FSLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIET--------------GEV   66 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~--------------~~~   66 (85)
                      ++++++.|+.|++||+++ ..+...+.. +...+.++.|+|++. ++++++.|+.|++||+..              ...
T Consensus       292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  370 (430)
T 2xyi_A          292 ILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL  370 (430)
T ss_dssp             EEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred             EEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence            588999999999999997 455666665 778899999999884 689999999999999986              244


Q ss_pred             cccccccccceeEEEEeCC
Q psy7058          67 DKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        67 ~~~~~~~~~~v~~~~~~~~   85 (85)
                      +..+.+|...|++++|+|.
T Consensus       371 ~~~~~~h~~~v~~~~~~p~  389 (430)
T 2xyi_A          371 LFIHGGHTAKISDFSWNPN  389 (430)
T ss_dssp             EEECCCCSSCEEEEEECSS
T ss_pred             EEEcCCCCCCceEEEECCC
Confidence            5566788899999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.66  E-value=7.5e-15  Score=77.62  Aligned_cols=83  Identities=17%  Similarity=0.257  Sum_probs=69.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcCCcc-cccc----------
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIETGE-VDKE----------   69 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~~~----------   69 (85)
                      .++++++.++.+++||+.+++....+.. +...+.++.|+|++. .+++++.|+.|++||++... ....          
T Consensus       157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  235 (408)
T 4a11_B          157 CLVAVGTRGPKVQLCDLKSGSCSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ  235 (408)
T ss_dssp             CEEEEEESSSSEEEEESSSSCCCEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred             cEEEEEcCCCeEEEEeCCCcceeeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence            4789999999999999999888887776 778899999999988 58899999999999997654 2222          


Q ss_pred             -----ccccccceeEEEEeCC
Q psy7058          70 -----YSGHQKAITSLAFCDF   85 (85)
Q Consensus        70 -----~~~~~~~v~~~~~~~~   85 (85)
                           ...|...|.+++|+|.
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~  256 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSD  256 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTT
T ss_pred             eeccccccccCceeEEEEcCC
Confidence                 2568889999999873

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.7e-15  Score=78.74  Aligned_cols=83  Identities=20%  Similarity=0.368  Sum_probs=72.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccC-----CCcEEEEEecCCC-CEEEEEcCCC---eEEEEEcCCc-ccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTAN-----QRWVWDAAFTLDS-KFLLTASSDG---VARLWNIETG-EVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~---~i~~~~~~~~-~~~~~~~   71 (85)
                      .++++++.|+.|++||+.+++....+....     ...+.++.|+|++ ..+++++.++   .|++||++.+ .+...+.
T Consensus       179 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~  258 (416)
T 2pm9_A          179 HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN  258 (416)
T ss_dssp             TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC
T ss_pred             cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee
Confidence            578999999999999999988887776522     6789999999987 6899999998   9999999986 5667777


Q ss_pred             -ccccceeEEEEeC
Q psy7058          72 -GHQKAITSLAFCD   84 (85)
Q Consensus        72 -~~~~~v~~~~~~~   84 (85)
                       +|...|.+++|+|
T Consensus       259 ~~~~~~v~~~~~s~  272 (416)
T 2pm9_A          259 QGHQKGILSLDWCH  272 (416)
T ss_dssp             SCCSSCEEEEEECS
T ss_pred             cCccCceeEEEeCC
Confidence             8999999999987

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.66  E-value=4.6e-16  Score=82.89  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=55.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCC-CEEEEEcCCCeEEEEEcCCccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDS-KFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      ++|++++.|+++++||+.++........ +...+.+++|+|++ .++++++.|+.|++||++.++.
T Consensus       157 ~~las~s~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~  221 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS  221 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred             CEEEEEECCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence            5799999999999999988877776666 67789999999987 4799999999999999987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=5.1e-15  Score=79.88  Aligned_cols=85  Identities=13%  Similarity=0.130  Sum_probs=71.9

Q ss_pred             Ccee-EEeeCCCcEEEeeCC--Cceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc----cccc
Q psy7058           1 MGLL-ATTSADQTARIWNTE--DFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK----EYSG   72 (85)
Q Consensus         1 g~~l-~~~~~~~~i~~~d~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~   72 (85)
                      |++| ++++.|+.+++||+.  +++....+.. .+...+.+++|+|++.++++++.++.+++|++.++....    .+.+
T Consensus       114 ~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~  193 (450)
T 2vdu_B          114 ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG  193 (450)
T ss_dssp             SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE
T ss_pred             CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec
Confidence            3554 889999999999998  7777776653 256779999999999999999999999999998876554    7778


Q ss_pred             cccceeEEEEeCC
Q psy7058          73 HQKAITSLAFCDF   85 (85)
Q Consensus        73 ~~~~v~~~~~~~~   85 (85)
                      |...|++++|+|.
T Consensus       194 h~~~v~~~~~sp~  206 (450)
T 2vdu_B          194 HVSMLTDVHLIKD  206 (450)
T ss_dssp             CSSCEEEEEEEEC
T ss_pred             ccCceEEEEEcCC
Confidence            9999999999984

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.65  E-value=3.6e-15  Score=77.52  Aligned_cols=80  Identities=25%  Similarity=0.295  Sum_probs=69.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCc------eeeeeeeccCC---------CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           1 MGLLATTSADQTARIWNTEDF------SLVRELGTANQ---------RWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      ++++++++.|+.+++|++...      +....+.. +.         ..+.+++|+|++.++++++.|+.|++||+.+++
T Consensus       206 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC-CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEecCCcEEEEEEcCCCcccccccceeeec-ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence            367899999999999999876      55555554 43         389999999999999999999999999999999


Q ss_pred             cccccccc-ccceeEEE
Q psy7058          66 VDKEYSGH-QKAITSLA   81 (85)
Q Consensus        66 ~~~~~~~~-~~~v~~~~   81 (85)
                      .+..+..| ...|.+++
T Consensus       285 ~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          285 KIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             EEEECCCCSSSEEEEEE
T ss_pred             HhhhhhcccCCCceEec
Confidence            99899888 89998887

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.65  E-value=5.6e-15  Score=84.04  Aligned_cols=83  Identities=20%  Similarity=0.239  Sum_probs=70.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCC--CCEEEEEcCCCeEEEEEcCCcc--ccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLD--SKFLLTASSDGVARLWNIETGE--VDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~   74 (85)
                      ++++++++.|+.|++||+.+++  ....... +...+.++.|+|+  +..+++++.|+.|++||++...  ....+..|.
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~  145 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence            4689999999999999999876  4444444 7788999999999  9999999999999999998773  334566788


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..|.+++|+|
T Consensus       146 ~~v~~l~~~p  155 (753)
T 3jro_A          146 IGVNSASWAP  155 (753)
T ss_dssp             SCEEEEEECC
T ss_pred             CceEEEEecC
Confidence            9999999987

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.62  E-value=7.3e-15  Score=81.65  Aligned_cols=81  Identities=14%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCcee-------eeeee---ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc---
Q psy7058           1 MGLLATTSADQTARIWNTEDFSL-------VRELG---TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD---   67 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---   67 (85)
                      |++|++|+.|+.|++||+.+++.       ...+.   .+|...|.+++|+|+|  +++++.|+.+++|++......   
T Consensus       141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~  218 (588)
T 2j04_A          141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS  218 (588)
T ss_dssp             SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce
Confidence            67899999999999999988752       44543   3366789999999999  788889999999999876632   


Q ss_pred             ccc-cccccceeEEEEe
Q psy7058          68 KEY-SGHQKAITSLAFC   83 (85)
Q Consensus        68 ~~~-~~~~~~v~~~~~~   83 (85)
                      ..+ .+|...|.+++|+
T Consensus       219 ~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          219 RMIQNASRRKITDLKIV  235 (588)
T ss_dssp             EEEECCCSSCCCCEEEE
T ss_pred             eeecccccCcEEEEEEE
Confidence            345 3677899999986

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.61  E-value=5.1e-14  Score=74.44  Aligned_cols=82  Identities=15%  Similarity=0.355  Sum_probs=72.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCC---CCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD---SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      +++++++.|+.+++||+.+++....+.  +...+..+.+++.   +..+++++.++.|++||+.+++....+..|...|.
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~  190 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL  190 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence            578999999999999999988877776  4556889999884   45999999999999999999998889999999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       191 ~~~~~~~  197 (408)
T 4a11_B          191 AVSWSPR  197 (408)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9999873

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.60  E-value=4e-14  Score=76.18  Aligned_cols=79  Identities=22%  Similarity=0.444  Sum_probs=45.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +++++++.|+.+++||+.+++....+.. +...+.++.+  ++..+++++.|+.|++||+++++.+..+..|...+.++.
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  326 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME  326 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence            3455556666666666555555555543 4445555555  555666666666666666666555555555555555555


Q ss_pred             Ee
Q psy7058          82 FC   83 (85)
Q Consensus        82 ~~   83 (85)
                      ++
T Consensus       327 ~~  328 (445)
T 2ovr_B          327 LK  328 (445)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.54  E-value=1.1e-13  Score=74.01  Aligned_cols=84  Identities=10%  Similarity=0.050  Sum_probs=71.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec----cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccce
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT----ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      .++++++.++.|++||+.+++.......    .+...+.++.|++++..+++++.++.|++||+.+++....+..+...+
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~  214 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS  214 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence            4567778888999999998887763321    366789999999999999999999999999999988888888888899


Q ss_pred             eEEEEeCC
Q psy7058          78 TSLAFCDF   85 (85)
Q Consensus        78 ~~~~~~~~   85 (85)
                      .+++|+|.
T Consensus       215 ~~~~~~~~  222 (433)
T 3bws_A          215 KILLYDPI  222 (433)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEcCC
Confidence            99999873

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.53  E-value=5.2e-13  Score=70.66  Aligned_cols=80  Identities=8%  Similarity=0.039  Sum_probs=67.1

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      .+++++.|+.|++||+.+++....+.. + ..+.++.|+|++..+ ++++.++.|++||+.+++....+..+. .+.+++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPV-G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeec-C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            567888999999999999988887765 3 348999999999876 677789999999999998887777444 889999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus        81 ~spd   84 (391)
T 1l0q_A           81 VSPD   84 (391)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            9873

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.48  E-value=2.1e-12  Score=69.12  Aligned_cols=83  Identities=5%  Similarity=0.012  Sum_probs=68.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+++++++.|+.+++||+.+++....+.. +...+.+++|+|++..++ ++..++.|++||+.+++....+.. ...+..
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~  258 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRG  258 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceE
Confidence            35788999999999999999888877775 667799999999998875 555799999999998887777764 345888


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       259 ~~~~~~  264 (433)
T 3bws_A          259 LLLSKD  264 (433)
T ss_dssp             EEECTT
T ss_pred             EEEcCC
Confidence            888763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.42  E-value=1.1e-11  Score=65.56  Aligned_cols=81  Identities=12%  Similarity=0.086  Sum_probs=64.9

Q ss_pred             cee-EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           2 GLL-ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l-~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +++ ++++.++.|++||+.+++....+.. + ..+.+++|+|+++.++ ++..++.|++||+.+++....+.. ...+.+
T Consensus        44 ~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~  120 (391)
T 1l0q_A           44 TKVYVANAHSNDVSIIDTATNNVIATVPA-G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLG  120 (391)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEE
T ss_pred             CEEEEECCCCCeEEEEECCCCeEEEEEEC-C-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcce
Confidence            444 6777899999999999988887775 3 3799999999999775 555679999999998887777663 456788


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       121 ~~~s~d  126 (391)
T 1l0q_A          121 LALSPD  126 (391)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            888863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.41  E-value=8.7e-12  Score=69.24  Aligned_cols=80  Identities=11%  Similarity=0.104  Sum_probs=68.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEc--CCccccccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI--ETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~v~~   79 (85)
                      .++++++.++.|.+||..+++....+...+.  +..+.++|+++++++++.++.|.+||+  .+++.+..+. +......
T Consensus       150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~  226 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARS  226 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEE
T ss_pred             EEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcce
Confidence            4578888899999999999999888875333  789999999999999999999999999  7888777777 4556788


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++|+|
T Consensus       227 va~sp  231 (543)
T 1nir_A          227 VESSK  231 (543)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.40  E-value=2.6e-11  Score=65.29  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             CceeEEeeCCC---cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCC--eEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSADQ---TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDG--VARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |++|+.++.++   .|++||+.+++... +.. +...+.++.|+|+|+.++ +++.++  .|++||+.+++. ..+..+.
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~  266 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR  266 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEE-EEC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEEE-eec-CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence            46788888775   89999999887653 333 556799999999999877 565554  599999987765 4556677


Q ss_pred             cceeEEEEeCC
Q psy7058          75 KAITSLAFCDF   85 (85)
Q Consensus        75 ~~v~~~~~~~~   85 (85)
                      ..+.+++|+|.
T Consensus       267 ~~~~~~~~spd  277 (415)
T 2hqs_A          267 SNNTEPTWFPD  277 (415)
T ss_dssp             SCEEEEEECTT
T ss_pred             CcccceEECCC
Confidence            88999999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.38  E-value=1.9e-11  Score=65.84  Aligned_cols=80  Identities=11%  Similarity=0.095  Sum_probs=61.7

Q ss_pred             eeEEeeCC------CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC---eEEEEEcCCcccccccccc
Q psy7058           3 LLATTSAD------QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG---VARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         3 ~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~   73 (85)
                      .++.++.+      +.|++||+... ....+.. +...+.+++|+|+|+.+++++.++   .|++||+.+++.. .+..+
T Consensus       145 ~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~-~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          145 RIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTSC-SCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             EEEEEEecCCCCccceEEEEcCCCC-CCEEEeC-CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            45555543      78999999754 3444444 667799999999999999988775   9999999988764 45557


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      ...+.+++|+|.
T Consensus       222 ~~~~~~~~~spd  233 (415)
T 2hqs_A          222 PRHNGAPAFSPD  233 (415)
T ss_dssp             SSCEEEEEECTT
T ss_pred             CCcccCEEEcCC
Confidence            778999999984

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.31  E-value=4.1e-11  Score=70.39  Aligned_cols=83  Identities=8%  Similarity=-0.051  Sum_probs=67.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC----------CeEEEEEcCCccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD----------GVARLWNIETGEVDKEY   70 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~   70 (85)
                      |++|++++.++.+++||+.+++....... +...+..+.|+|+|+++++++.+          +.|++||+..++ ...+
T Consensus       390 G~~la~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l  467 (1045)
T 1k32_A          390 GKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA  467 (1045)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC
T ss_pred             CCEEEEECCCCeEEEEECCCCceEEeccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe
Confidence            56789999999999999998887666544 66678899999999998877654          389999998776 5556


Q ss_pred             cccccceeEEEEeCC
Q psy7058          71 SGHQKAITSLAFCDF   85 (85)
Q Consensus        71 ~~~~~~v~~~~~~~~   85 (85)
                      ..+...+..++|+|.
T Consensus       468 ~~~~~~~~~~~~spd  482 (1045)
T 1k32_A          468 TTENSHDYAPAFDAD  482 (1045)
T ss_dssp             SCSSSBEEEEEECTT
T ss_pred             eCCCcccCCceEcCC
Confidence            667777888888873

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.28  E-value=6.8e-11  Score=67.06  Aligned_cols=84  Identities=10%  Similarity=0.031  Sum_probs=64.9

Q ss_pred             CceeEEeeC-CC-----cEEEeeCCCceeeeeeecc-CC----------------------CcEEEEEecCCCCEEEEEc
Q psy7058           1 MGLLATTSA-DQ-----TARIWNTEDFSLVRELGTA-NQ----------------------RWVWDAAFTLDSKFLLTAS   51 (85)
Q Consensus         1 g~~l~~~~~-~~-----~i~~~d~~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~~~~~~~~~   51 (85)
                      |++|++++. |+     .|++||+.+++........ ..                      ..+..+.|+|||+.+++++
T Consensus        48 G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~  127 (741)
T 2ecf_A           48 GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPL  127 (741)
T ss_dssp             SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEE
T ss_pred             CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEe
Confidence            567888887 77     8999999988776555431 11                      2367899999999999887


Q ss_pred             CCCeEEEEEcCCcc--ccccccccccceeEEEEeCC
Q psy7058          52 SDGVARLWNIETGE--VDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        52 ~~~~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~   85 (85)
                      . +.|++||+..+.  ....+..+...+..++|+|.
T Consensus       128 ~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD  162 (741)
T 2ecf_A          128 G-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK  162 (741)
T ss_dssp             T-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT
T ss_pred             C-CcEEEEECCCCCcceEEEcccCCcccccccCCCC
Confidence            6 899999998773  44556667788999999984

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.24  E-value=1.1e-10  Score=59.30  Aligned_cols=77  Identities=14%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             EeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC-cccccccccc-ccceeEEEEe
Q psy7058           6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET-GEVDKEYSGH-QKAITSLAFC   83 (85)
Q Consensus         6 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~-~~~v~~~~~~   83 (85)
                      ..+.++.|++||+.+++......  +...+.++.|+|+++++++++ ++.|++||+.. ++.......+ ...+.+++|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            34578899999999887664433  566799999999999998876 77999999988 7665555444 3677888887


Q ss_pred             CC
Q psy7058          84 DF   85 (85)
Q Consensus        84 ~~   85 (85)
                      |.
T Consensus        94 pd   95 (297)
T 2ojh_A           94 PD   95 (297)
T ss_dssp             TT
T ss_pred             CC
Confidence            73

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.22  E-value=4.5e-10  Score=58.35  Aligned_cols=80  Identities=10%  Similarity=0.108  Sum_probs=61.5

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCccc-cccccccccceeEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEV-DKEYSGHQKAITSL   80 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~~~~~v~~~   80 (85)
                      .+++.+.++.|.+||..+++....+.. ..... .+.++|+++.+++++. ++.|.+||..+++. ...+..+..+..++
T Consensus        12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (331)
T 3u4y_A           12 GIVVEQHLRRISFFSTDTLEILNQITL-GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV   89 (331)
T ss_dssp             EEEEEGGGTEEEEEETTTCCEEEEEEC-CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE
T ss_pred             EEEEecCCCeEEEEeCcccceeeeEEc-cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce
Confidence            467888899999999999988777765 34445 9999999997665554 88999999998876 55666555555557


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus        90 ~~s~   93 (331)
T 3u4y_A           90 DITP   93 (331)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            8776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.22  E-value=9.3e-10  Score=61.27  Aligned_cols=82  Identities=10%  Similarity=0.050  Sum_probs=65.4

Q ss_pred             CceeEEeeCCCcEEEeeC--CCceeeeeeeccCCCcEEEEEecC----CCCEEEEEcC-CCeEEEEEcCCcccccccccc
Q psy7058           1 MGLLATTSADQTARIWNT--EDFSLVRELGTANQRWVWDAAFTL----DSKFLLTASS-DGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      |++|++++.|+.|.+||+  .+++....+..  ......+.++|    +|+++++++. ++.|.+||..+++++..+..+
T Consensus       190 g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~  267 (543)
T 1nir_A          190 GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR  267 (543)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEECCCCeEEEEECcCCCCcEEEEEec--CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence            578999999999999999  78888777764  34578999999    9999988874 899999999988877766542


Q ss_pred             -----------ccceeEEEEeC
Q psy7058          74 -----------QKAITSLAFCD   84 (85)
Q Consensus        74 -----------~~~v~~~~~~~   84 (85)
                                 ...+..+.++|
T Consensus       268 g~~~~~~~~~~~~~v~~i~~s~  289 (543)
T 1nir_A          268 GMTVDTQTYHPEPRVAAIIASH  289 (543)
T ss_dssp             EECSSSCCEESCCCEEEEEECS
T ss_pred             CcccCccccccCCceEEEEECC
Confidence                       12566777765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.20  E-value=6.2e-10  Score=57.98  Aligned_cols=83  Identities=8%  Similarity=-0.005  Sum_probs=61.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEEcCCcccccccccc------c
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNIETGEVDKEYSGH------Q   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~------~   74 (85)
                      .++++++.++.|.+||..+++....+..........+.++|+++.++ +...++.|.+||+.+++....+...      .
T Consensus        12 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~   91 (349)
T 1jmx_B           12 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   91 (349)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence            56788899999999999998887777653322467899999998654 5567889999999888766555422      2


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+..++|+|
T Consensus        92 ~~~~~~~~sp  101 (349)
T 1jmx_B           92 RSMYSFAISP  101 (349)
T ss_dssp             ECSSCEEECT
T ss_pred             ccccceEECC
Confidence            2367777776

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.19  E-value=7.1e-11  Score=65.63  Aligned_cols=78  Identities=13%  Similarity=-0.016  Sum_probs=59.6

Q ss_pred             CceeEEeeCC----CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC--eEEEEEcCCccccccccccc
Q psy7058           1 MGLLATTSAD----QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG--VARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus         1 g~~l~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~   74 (85)
                      |++++.++.+    ..|++||+.+++.. .+.. +...+..+.|+|||+.+++...++  .|++||+..++.. .+..+.
T Consensus       161 G~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          161 GDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             TTEEEEEEEEETTEEEEEEEETTTCCCE-EECC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred             CCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence            5678877766    77999999887765 3333 566789999999999999888888  8999999887766 555555


Q ss_pred             cceeEEE
Q psy7058          75 KAITSLA   81 (85)
Q Consensus        75 ~~v~~~~   81 (85)
                      ..+..+.
T Consensus       238 ~~~~~~~  244 (582)
T 3o4h_A          238 KDFSSYR  244 (582)
T ss_dssp             SHHHHHC
T ss_pred             cChhhhh
Confidence            5555555

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.18  E-value=4.6e-10  Score=66.11  Aligned_cols=82  Identities=15%  Similarity=0.088  Sum_probs=66.1

Q ss_pred             ceeEEeeCCCcEE-EeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           2 GLLATTSADQTAR-IWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +.++.++.+..+. +||+.+++.... .. +...+..+.|+|+|+.+++++.++.+++||+.+++.......|...+..+
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~~~~~l-~~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTGKAEKF-EE-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  426 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEC-CC-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             CeEEEEECCCceEEEEECCCCCceEe-cC-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence            4567777777888 889887655433 33 66678999999999999999999999999999888776666788888999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       427 ~~SpD  431 (1045)
T 1k32_A          427 TISDN  431 (1045)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            99874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.16  E-value=9.2e-11  Score=66.34  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCC---cEEEEEecCCCCEEEEEcCC---------CeEEEEEcCCccc--
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQR---WVWDAAFTLDSKFLLTASSD---------GVARLWNIETGEV--   66 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~--   66 (85)
                      |+++++ +.|+.+++||+.+++....+.. +..   .+..+.|+|||+++++++.+         +.+.+||+.+++.  
T Consensus        28 g~~~~~-~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  105 (723)
T 1xfd_A           28 TEFIYR-EQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS  105 (723)
T ss_dssp             SCBCCC-CSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE
T ss_pred             CcEEEE-eCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe
Confidence            344444 6889999999998887666554 332   48899999999999988664         7888999988765  


Q ss_pred             cccccccccceeEEEEeCC
Q psy7058          67 DKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        67 ~~~~~~~~~~v~~~~~~~~   85 (85)
                      +.....+...+..++|||.
T Consensus       106 l~~~~~~~~~~~~~~~SPd  124 (723)
T 1xfd_A          106 LDPPEVSNAKLQYAGWGPK  124 (723)
T ss_dssp             CCCTTCCSCCCSBCCBCSS
T ss_pred             ccCCccccccccccEECCC
Confidence            2222334445777888873

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.13  E-value=2.6e-09  Score=56.80  Aligned_cols=71  Identities=13%  Similarity=0.217  Sum_probs=60.0

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc--cccccccccccceeEEEEeCC
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG--EVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      ..+.+||+.+++.+..+.. ..  ...+.++|+|+++++++. +.|.+||..++  +.+..+.......+.+.++|.
T Consensus       286 ~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             SEEEEEETTTTEEEEEEEC-TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             ceEEEEECCCCcEEEEEec-CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence            4799999999999888876 33  889999999999888877 99999999999  888887556677788888873

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.12  E-value=1.3e-09  Score=56.50  Aligned_cols=83  Identities=11%  Similarity=0.065  Sum_probs=62.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCC-cEEEEEecCCCCEE-EEEcCCCeEEEEEcCCcccccccccc-----c
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQR-WVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYSGH-----Q   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~-----~   74 (85)
                      +++++++.++.|.+||..+++....+...... .+..+.|+|+++.+ ++...++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            57899999999999999999888777642321 36789999999765 55666789999999888776555421     2


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+..++|+|
T Consensus        82 ~~~~~~~~s~   91 (337)
T 1pby_B           82 KSLFGAALSP   91 (337)
T ss_dssp             ECTTCEEECT
T ss_pred             ccccceEECC
Confidence            2556677765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.11  E-value=2.4e-09  Score=55.89  Aligned_cols=82  Identities=9%  Similarity=0.093  Sum_probs=62.5

Q ss_pred             ceeEEee--CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc----ccc
Q psy7058           2 GLLATTS--ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG----HQK   75 (85)
Q Consensus         2 ~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~   75 (85)
                      ++++.++  .++.|.+||..+++....+.. ....+..+.|+|++..+++++.++.+.+||..+++....+..    +..
T Consensus       153 ~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  231 (353)
T 3vgz_A          153 NTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH  231 (353)
T ss_dssp             TEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCC
T ss_pred             CEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCc
Confidence            4455544  478899999999888877763 333467889999999999999999999999998877665553    344


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      .+..++|+|
T Consensus       232 ~~~~~~~s~  240 (353)
T 3vgz_A          232 FFINISLDT  240 (353)
T ss_dssp             CEEEEEEET
T ss_pred             ccceEEECC
Confidence            566788876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.11  E-value=1.9e-09  Score=54.73  Aligned_cols=82  Identities=11%  Similarity=0.106  Sum_probs=59.0

Q ss_pred             ceeE-EeeCCCcEEEeeCC--CceeeeeeeccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEcC-Cccccccccccccc
Q psy7058           2 GLLA-TTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNIE-TGEVDKEYSGHQKA   76 (85)
Q Consensus         2 ~~l~-~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~~~~~~~~~~   76 (85)
                      ++++ ++..++.+.+|++.  +++. ..+.. +...+..+.|+|++..++.++ .++.+.+|++. .+.....+..+...
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  218 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSGVE-TRLTH-GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG  218 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCE-EECCC-SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE
T ss_pred             CEEEEEECCCCceEEEEEECCCCcc-eEccc-CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc
Confidence            4455 77788988888853  3333 33333 556789999999999877655 58889999886 45556666667778


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      +..++|+|.
T Consensus       219 ~~~~~~s~d  227 (297)
T 2ojh_A          219 DWFPHPSPS  227 (297)
T ss_dssp             EEEEEECTT
T ss_pred             cCCeEECCC
Confidence            888898873

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.10  E-value=3.1e-09  Score=55.22  Aligned_cols=83  Identities=16%  Similarity=0.016  Sum_probs=59.0

Q ss_pred             CceeEEee-CCCcEEEeeCCCcee-eeeeeccCCCcEEEEEecCCCCEEEEEcCC-C--eEEEEEcCCcccccccccccc
Q psy7058           1 MGLLATTS-ADQTARIWNTEDFSL-VRELGTANQRWVWDAAFTLDSKFLLTASSD-G--VARLWNIETGEVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~-~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~i~~~~~~~~~~~~~~~~~~~   75 (85)
                      |+++++++ .++.|.+||..+++. ...+.. ...+..++.|+|+++++++...+ +  .|.+||+.+++.+..+.. ..
T Consensus        51 g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~  128 (331)
T 3u4y_A           51 CSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PY  128 (331)
T ss_dssp             SCEEEEEESTTCEEEEEECSSSSCEEEEEEE-CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CT
T ss_pred             CCEEEEEeCCCCeEEEEECCCCceeEEeccc-CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CC
Confidence            34455554 478999999998877 555544 44444449999999998855544 2  899999998887776653 34


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      ....++|+|.
T Consensus       129 ~~~~~~~spd  138 (331)
T 3u4y_A          129 DAVGIAISPN  138 (331)
T ss_dssp             TEEEEEECTT
T ss_pred             CccceEECCC
Confidence            5578888873

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.07  E-value=3.4e-09  Score=60.08  Aligned_cols=84  Identities=12%  Similarity=-0.010  Sum_probs=59.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCC-----------------cEEEEEecCCCCEEEEEcCCC---------
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQR-----------------WVWDAAFTLDSKFLLTASSDG---------   54 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~---------   54 (85)
                      |++|+.++. +.|++||+.+++...........                 .+..+.|+|||+.+++++.+.         
T Consensus       125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence            456777775 78999999987765544331111                 127899999999998876442         


Q ss_pred             -------------------------eEEEEEcCCcccccccccc------ccceeEEEEeCC
Q psy7058          55 -------------------------VARLWNIETGEVDKEYSGH------QKAITSLAFCDF   85 (85)
Q Consensus        55 -------------------------~i~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~   85 (85)
                                               .|++||+..++....+..+      ...+..++|+|.
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD  265 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS  265 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence                                     7999999887754444433      567888999874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.06  E-value=4.1e-09  Score=59.95  Aligned_cols=67  Identities=12%  Similarity=0.107  Sum_probs=50.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      |++|++++. +.|++||+.++.  ....+.. +...+..+.|+|||+.++.++ ++.|++||+..++.....
T Consensus       120 g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          120 AQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SSEEEEEET-TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred             CCEEEEEeC-CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence            466777776 899999998872  3333433 556799999999999998876 459999999877655433

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.05  E-value=9.3e-09  Score=53.69  Aligned_cols=82  Identities=9%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCC--------cEEEEEecCCCCEEEEEc--CCCeEEEEEcCCccccccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQR--------WVWDAAFTLDSKFLLTAS--SDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      .+++...++.+.+||..+++....+......        ....+.++|++..++.++  .++.|.+||..+++....+..
T Consensus       103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC
T ss_pred             EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC
Confidence            3455566789999999998887776652211        268899999998777665  578999999998887777664


Q ss_pred             cccceeEEEEeC
Q psy7058          73 HQKAITSLAFCD   84 (85)
Q Consensus        73 ~~~~v~~~~~~~   84 (85)
                      +...+..++|+|
T Consensus       183 ~~~~~~~~~~s~  194 (353)
T 3vgz_A          183 TGKMSTGLALDS  194 (353)
T ss_dssp             CCTTCCCCEEET
T ss_pred             CCCccceEEECC
Confidence            555567777766

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.05  E-value=2e-09  Score=61.14  Aligned_cols=84  Identities=8%  Similarity=-0.039  Sum_probs=58.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcE-----------------EEEEecCCCCEEEEEcCCC---------
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWV-----------------WDAAFTLDSKFLLTASSDG---------   54 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~---------   54 (85)
                      |++|+.+. ++.|++||+.+++........+...+                 ..+.|+|||+.+++++.+.         
T Consensus       121 G~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~  199 (719)
T 1z68_A          121 GSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS  199 (719)
T ss_dssp             TTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred             CCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence            45677765 77999999988776543322222212                 4799999999998876442         


Q ss_pred             -------------------------eEEEEEcCCcccc--------ccccccccceeEEEEeCC
Q psy7058          55 -------------------------VARLWNIETGEVD--------KEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        55 -------------------------~i~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~   85 (85)
                                               .+++||+..++..        ..+..+...+..++|+|.
T Consensus       200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD  263 (719)
T 1z68_A          200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD  263 (719)
T ss_dssp             ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS
T ss_pred             ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC
Confidence                                     7889999877643        234457778899999884

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.02  E-value=5.9e-09  Score=54.04  Aligned_cols=68  Identities=9%  Similarity=0.022  Sum_probs=54.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      ++++++  ++.|.+||+.+++....+..  ...+..+.|+|+++.+++++.++.|.+||+.+++.+..+...
T Consensus       253 ~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          253 TRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             SEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            455655  68899999999888777664  234678999999999888888999999999988877766543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.02  E-value=1.1e-08  Score=55.17  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      +++|+++ .++.|++||+.+......... +...+..+.+.+.  .++.+..||.+.+||+.++....    +...|.++
T Consensus        97 ~~~L~v~-~~~~l~v~dv~sl~~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v  168 (388)
T 1xip_A           97 GDQVLVS-TRNALYSLDLEELSEFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF  168 (388)
T ss_dssp             TTEEEEE-ESSEEEEEESSSTTCEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred             CCEEEEE-cCCcEEEEEchhhhccCccce-eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence            3567777 789999999987664444433 5556777766543  38888999999999998776532    45689999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       169 ~WSpk  173 (388)
T 1xip_A          169 DVTNS  173 (388)
T ss_dssp             EECSS
T ss_pred             EEcCC
Confidence            99983

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.02  E-value=3.5e-09  Score=54.98  Aligned_cols=81  Identities=12%  Similarity=0.033  Sum_probs=53.8

Q ss_pred             CceeEEeeCC-CcEEEeeCC--Ccee--eeeeeccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEcC---Ccccccccc
Q psy7058           1 MGLLATTSAD-QTARIWNTE--DFSL--VRELGTANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNIE---TGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~-~~i~~~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~---~~~~~~~~~   71 (85)
                      |+++++++.+ +.+.+|++.  +++.  ...+..  ...+..++|+|+++.+++++ .++.|.+|++.   ..+....+.
T Consensus        49 g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~  126 (343)
T 1ri6_A           49 KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE  126 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred             CCEEEEeecCCCeEEEEEecCCCCceeecccccc--CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence            4567777776 899999987  4443  333332  23578899999999876655 58899999994   333333343


Q ss_pred             ccccceeEEEEeC
Q psy7058          72 GHQKAITSLAFCD   84 (85)
Q Consensus        72 ~~~~~v~~~~~~~   84 (85)
                       ....+.+++|+|
T Consensus       127 -~~~~~~~~~~s~  138 (343)
T 1ri6_A          127 -GLDGCHSANISP  138 (343)
T ss_dssp             -CCTTBCCCEECT
T ss_pred             -CCCCceEEEECC
Confidence             233466777766

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.01  E-value=4.4e-09  Score=54.61  Aligned_cols=79  Identities=14%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             eEEeeCCCcEEEeeCC-Cc--eeeeeeeccCCCcEEEEEecCCCCEEEEEcCC-CeEEEEEcC--Ccc--cccccccccc
Q psy7058           4 LATTSADQTARIWNTE-DF--SLVRELGTANQRWVWDAAFTLDSKFLLTASSD-GVARLWNIE--TGE--VDKEYSGHQK   75 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~--~~~~~~~~~~   75 (85)
                      +++++.++.|++||+. ++  +....+.  +...+..++|+|+++.+++++.+ +.+.+|++.  .++  .+..+..+. 
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            3444789999999985 33  2233322  45567889999999988887776 899999997  333  233344333 


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .+..++|+|.
T Consensus        85 ~~~~~~~s~d   94 (343)
T 1ri6_A           85 SLTHISTDHQ   94 (343)
T ss_dssp             CCSEEEECTT
T ss_pred             CCcEEEEcCC
Confidence            6777888763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.98  E-value=1.9e-09  Score=61.20  Aligned_cols=78  Identities=18%  Similarity=0.244  Sum_probs=57.8

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCC---cEEEEEecCCCCEEEEEcC---------CCeEEEEEcCCcccc--cc
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQR---WVWDAAFTLDSKFLLTASS---------DGVARLWNIETGEVD--KE   69 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~--~~   69 (85)
                      ++..+.|+.|++||+.+++....+.. +..   .+..+.|+|||+.+++++.         ++.+++||+.+++..  ..
T Consensus        29 ~~~~~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~  107 (719)
T 1z68_A           29 YLHQSADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE  107 (719)
T ss_dssp             EEEECTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence            44455689999999998887665543 221   3789999999999988765         689999999887763  22


Q ss_pred             ccccccceeEEEEeCC
Q psy7058          70 YSGHQKAITSLAFCDF   85 (85)
Q Consensus        70 ~~~~~~~v~~~~~~~~   85 (85)
                      +   ...+..++|||.
T Consensus       108 l---~~~~~~~~~SPD  120 (719)
T 1z68_A          108 L---PRPIQYLCWSPV  120 (719)
T ss_dssp             C---CSSBCCEEECSS
T ss_pred             c---CcccccceECCC
Confidence            2   246778888874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.97  E-value=5e-09  Score=59.37  Aligned_cols=84  Identities=10%  Similarity=0.012  Sum_probs=59.1

Q ss_pred             CceeEEeeCCCcEEEeeCCC-----ceeeeeeeccCCC-------------cEEEEEecCCCCEEEEEc-----------
Q psy7058           1 MGLLATTSADQTARIWNTED-----FSLVRELGTANQR-------------WVWDAAFTLDSKFLLTAS-----------   51 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~-----~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-----------   51 (85)
                      |++|+.+ .++.|++||+.+     ++...........             .+..+.|+|||+.+++++           
T Consensus       132 G~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~  210 (706)
T 2z3z_A          132 GDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPI  210 (706)
T ss_dssp             SSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEE
T ss_pred             CCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEe
Confidence            4567764 678999999988     6665443331221             147899999999998876           


Q ss_pred             ----------------------CCCeEEEEEcCCcccccccc--ccccceeEEEEeCC
Q psy7058          52 ----------------------SDGVARLWNIETGEVDKEYS--GHQKAITSLAFCDF   85 (85)
Q Consensus        52 ----------------------~~~~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~   85 (85)
                                            .+..|++||+.+++......  .+...+..++|+|.
T Consensus       211 ~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  268 (706)
T 2z3z_A          211 VDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPD  268 (706)
T ss_dssp             EECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTT
T ss_pred             eccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECC
Confidence                                  34679999998876543332  35667889999874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.95  E-value=1.5e-08  Score=58.04  Aligned_cols=80  Identities=10%  Similarity=0.094  Sum_probs=59.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCC-----cEEEEEecCCCCEEEEEcCC---------CeEEEEEcCCcccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQR-----WVWDAAFTLDSKFLLTASSD---------GVARLWNIETGEVD   67 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~   67 (85)
                      ++++++  |+.|++||+.+++....+.. +..     ....+.|+|||+.++.++.+         +.+.+||+.+++..
T Consensus        29 ~~~~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~  105 (740)
T 4a5s_A           29 EYLYKQ--ENNILVFNAEYGNSSVFLEN-STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI  105 (740)
T ss_dssp             EEEEEE--TTEEEEEETTTCCEEEEECT-TTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred             cEEEEc--CCcEEEEECCCCceEEEEec-hhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence            455665  89999999999887665554 221     22458899999999887765         56779999988754


Q ss_pred             ccccccccceeEEEEeCC
Q psy7058          68 KEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        68 ~~~~~~~~~v~~~~~~~~   85 (85)
                       .+..+...+...+|||.
T Consensus       106 -~l~~~~~~~~~~~~SPd  122 (740)
T 4a5s_A          106 -TEERIPNNTQWVTWSPV  122 (740)
T ss_dssp             -CSSCCCTTEEEEEECSS
T ss_pred             -EcccCCCcceeeEECCC
Confidence             35556778899999984

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.93  E-value=1.2e-08  Score=53.14  Aligned_cols=67  Identities=12%  Similarity=0.041  Sum_probs=53.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      ++++++  ++.|.+||+.+++....+..  ...+..+.|++++..+++++.++.|.+||..+++.+..+..
T Consensus       268 ~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          268 NQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             TEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence            455555  77999999999888777664  23367899999998888888889999999998887766653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.89  E-value=2.4e-08  Score=53.89  Aligned_cols=74  Identities=14%  Similarity=0.044  Sum_probs=56.0

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc--cccc------c---c
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV--DKEY------S---G   72 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~------~---~   72 (85)
                      ++++..||.+.+||+.++....     ....+.+++|+|+|  ++.+..|+.+++|+......  ...+      .   .
T Consensus       139 ~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~  211 (388)
T 1xip_A          139 LVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPV  211 (388)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCT
T ss_pred             EEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccC
Confidence            6788999999999999776543     22359999999999  57788999999998765553  2233      2   2


Q ss_pred             cccceeEEEEeC
Q psy7058          73 HQKAITSLAFCD   84 (85)
Q Consensus        73 ~~~~v~~~~~~~   84 (85)
                      |...|.++.|.+
T Consensus       212 ~~~~V~sI~wl~  223 (388)
T 1xip_A          212 EEYSPLSVTILS  223 (388)
T ss_dssp             TTSEEEEEEESS
T ss_pred             CCeeEEEEEEec
Confidence            567788888864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.87  E-value=7.1e-08  Score=50.85  Aligned_cols=84  Identities=11%  Similarity=0.047  Sum_probs=54.6

Q ss_pred             CceeEEee-CCCcEEEeeCCCceee--eeeec--cCCCcEEEEEecCCCCEEEEEcC--CCeEEEEEcC--Ccc--cccc
Q psy7058           1 MGLLATTS-ADQTARIWNTEDFSLV--RELGT--ANQRWVWDAAFTLDSKFLLTASS--DGVARLWNIE--TGE--VDKE   69 (85)
Q Consensus         1 g~~l~~~~-~~~~i~~~d~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~--~~~--~~~~   69 (85)
                      |+++++++ .++.+.+||+.+++..  ..+..  ........+.|+|+|+++++...  ++.+.+|++.  +++  .+..
T Consensus       222 g~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~  301 (361)
T 3scy_A          222 GKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY  301 (361)
T ss_dssp             SSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence            35565555 6889999998866442  22222  12234679999999998866655  4899999985  333  3333


Q ss_pred             ccccccceeEEEEeCC
Q psy7058          70 YSGHQKAITSLAFCDF   85 (85)
Q Consensus        70 ~~~~~~~v~~~~~~~~   85 (85)
                      +.. ...+..++|+|.
T Consensus       302 ~~~-g~~~~~~~~spd  316 (361)
T 3scy_A          302 QLT-GIHPRNFIITPN  316 (361)
T ss_dssp             EEC-SSCCCEEEECTT
T ss_pred             ecC-CCCCceEEECCC
Confidence            333 456677888763

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.86  E-value=2.1e-08  Score=55.87  Aligned_cols=77  Identities=6%  Similarity=0.028  Sum_probs=56.2

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC----CeEEEEEcCCccccccccccccceeE
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD----GVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      +++++.++.+.+||+.+++....... ..   ..+.|+|||+.+++++.+    ..|++||+.+++.. .+..+...+..
T Consensus       125 ~~~s~~~~~~~l~d~~~g~~~~l~~~-~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~  199 (582)
T 3o4h_A          125 VFTGATEDRVALYALDGGGLRELARL-PG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSS  199 (582)
T ss_dssp             EEEEECSSCEEEEEEETTEEEEEEEE-SS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEE
T ss_pred             EEEecCCCCceEEEccCCcEEEeecC-CC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCcccc
Confidence            34444455566999988776554433 22   788999999999977766    67999998877644 55667788899


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       200 ~~~SpD  205 (582)
T 3o4h_A          200 ASISPG  205 (582)
T ss_dssp             EEECTT
T ss_pred             ceECCC
Confidence            999984

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.85  E-value=9.3e-08  Score=49.31  Aligned_cols=80  Identities=16%  Similarity=0.039  Sum_probs=60.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc-cceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ-KAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~v~~   79 (85)
                      ++.|++++.++.|.+||..+++.+.++.......+.++.+.|+|+.++  +.++.+..||. +++.+..+.... ..+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            467899999999999999899998888763223578899999999888  34678999998 787777766432 34444


Q ss_pred             EEEe
Q psy7058          80 LAFC   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +.+.
T Consensus        82 ~~~~   85 (276)
T 3no2_A           82 ARIL   85 (276)
T ss_dssp             EEEC
T ss_pred             cEEC
Confidence            4443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.80  E-value=6.8e-07  Score=46.87  Aligned_cols=85  Identities=12%  Similarity=0.151  Sum_probs=53.0

Q ss_pred             CceeEEee-CCCcEEEeeCCC-c--eeeeeeecc--------CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC-Ccccc
Q psy7058           1 MGLLATTS-ADQTARIWNTED-F--SLVRELGTA--------NQRWVWDAAFTLDSKFLLTASSDGVARLWNIE-TGEVD   67 (85)
Q Consensus         1 g~~l~~~~-~~~~i~~~d~~~-~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   67 (85)
                      |++|++++ .++.+.+|++.. +  .....+...        ....+..+.|+|+++.+++...++.+.+|++. .++..
T Consensus        97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A           97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS  176 (347)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence            45677666 678999999852 2  223332221        11247889999999966666678899999998 44322


Q ss_pred             --ccccc-cccceeEEEEeCC
Q psy7058          68 --KEYSG-HQKAITSLAFCDF   85 (85)
Q Consensus        68 --~~~~~-~~~~v~~~~~~~~   85 (85)
                        ..+.. .......++|+|.
T Consensus       177 ~~~~~~~~~g~~p~~~~~spd  197 (347)
T 3hfq_A          177 EQSVLTMEAGFGPRHLVFSPD  197 (347)
T ss_dssp             EEEEEECCTTCCEEEEEECTT
T ss_pred             EeeeEEcCCCCCCceEEECCC
Confidence              11111 2235667788763

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.79  E-value=5.4e-08  Score=55.24  Aligned_cols=84  Identities=17%  Similarity=0.285  Sum_probs=58.2

Q ss_pred             CceeEEeeCCC-----cEEEeeCCCceeeeeee-ccCCC---cEEEEEecC--CCCEEEEEcCCCeEEEEEcC-Cccccc
Q psy7058           1 MGLLATTSADQ-----TARIWNTEDFSLVRELG-TANQR---WVWDAAFTL--DSKFLLTASSDGVARLWNIE-TGEVDK   68 (85)
Q Consensus         1 g~~l~~~~~~~-----~i~~~d~~~~~~~~~~~-~~~~~---~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~-~~~~~~   68 (85)
                      |++|++++.++     .+++||+.+++....+. .....   .+..+.|+|  +|++++++..++.+++|.+. ++....
T Consensus       269 g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~  348 (706)
T 2z3z_A          269 ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR  348 (706)
T ss_dssp             SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred             CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence            45677766665     89999999883333332 21221   245789999  99999999889988999876 555566


Q ss_pred             cccccccceeE-EEEeC
Q psy7058          69 EYSGHQKAITS-LAFCD   84 (85)
Q Consensus        69 ~~~~~~~~v~~-~~~~~   84 (85)
                      .+..+...+.. ++|+|
T Consensus       349 ~l~~~~~~v~~~~~~sp  365 (706)
T 2z3z_A          349 QVTKGEWEVTNFAGFDP  365 (706)
T ss_dssp             ECCCSSSCEEEEEEECT
T ss_pred             ecCCCCeEEEeeeEEcC
Confidence            66666666765 67876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.78  E-value=3e-07  Score=48.47  Aligned_cols=82  Identities=18%  Similarity=0.142  Sum_probs=53.1

Q ss_pred             CceeEEeeCC--CcEEEeeCC--Cce--eeeeeeccCCCcEEEEEecCCCCEEEEEc-CCCeEEEEEc--CCccccccc-
Q psy7058           1 MGLLATTSAD--QTARIWNTE--DFS--LVRELGTANQRWVWDAAFTLDSKFLLTAS-SDGVARLWNI--ETGEVDKEY-   70 (85)
Q Consensus         1 g~~l~~~~~~--~~i~~~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~~~~-   70 (85)
                      |++|+++..+  +.+.+|++.  +++  ....+..  ...+..+.|+|+++++++++ .++.+.+|++  .+++..... 
T Consensus       270 g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~  347 (361)
T 3scy_A          270 GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK  347 (361)
T ss_dssp             SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred             CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence            4566565554  789999985  344  2333332  34567899999999888776 6789999755  455543322 


Q ss_pred             cccccceeEEEEeC
Q psy7058          71 SGHQKAITSLAFCD   84 (85)
Q Consensus        71 ~~~~~~v~~~~~~~   84 (85)
                      ..+...+.|+.|.+
T Consensus       348 ~~~~~~p~~v~~~~  361 (361)
T 3scy_A          348 DIKVDKPVCLKFVD  361 (361)
T ss_dssp             CEECSSEEEEEEEC
T ss_pred             eeeCCCCeEEEEcC
Confidence            22445788888863

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.77  E-value=1.3e-07  Score=50.14  Aligned_cols=70  Identities=11%  Similarity=-0.001  Sum_probs=51.2

Q ss_pred             CceeEEeeC-CC--cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSA-DQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |++|+..+. ++  .|.+||+.+++....... +...+....|+|+++.++....++.+++||+..++....+.
T Consensus        47 g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           47 GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             SCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            456776666 56  488899988877655543 33333456799999999999989999999998876554443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.76  E-value=6.6e-08  Score=54.55  Aligned_cols=83  Identities=13%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             CceeEEeeCC----------CcEEEeeCCC------ceeeeeee-ccCCCcEEEEEecCCCCEEEEEcCC--------Ce
Q psy7058           1 MGLLATTSAD----------QTARIWNTED------FSLVRELG-TANQRWVWDAAFTLDSKFLLTASSD--------GV   55 (85)
Q Consensus         1 g~~l~~~~~~----------~~i~~~d~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~   55 (85)
                      |+.|+.++.+          ..|++||+.+      ++.. .+. . ....+..+.|+|||+.++..+.+        ..
T Consensus       141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDD-AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCS-CSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEec-CCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence            4667777765          5799999987      5543 333 2 34567788999999998876644        37


Q ss_pred             EEEEEcC-Cc---cccccccccccceeEEEEeCC
Q psy7058          56 ARLWNIE-TG---EVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        56 i~~~~~~-~~---~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      |++||+. ++   +.......+...+..+.|+|.
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd  252 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD  252 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence            9999998 46   333333334678888999873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.73  E-value=8.6e-07  Score=50.01  Aligned_cols=78  Identities=12%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC--CccccccccccccceeEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE--TGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++...++.+.++|..+++.+..+...  .....+.++|+|+++++++.++.|.+||+.  +.+.+..+... .....+
T Consensus       169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~i  245 (567)
T 1qks_A          169 FSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSI  245 (567)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEE
T ss_pred             EEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCcee
Confidence            4566677899999999999988887752  236689999999999999999999999995  66666666532 334567


Q ss_pred             EEe
Q psy7058          81 AFC   83 (85)
Q Consensus        81 ~~~   83 (85)
                      +|+
T Consensus       246 a~s  248 (567)
T 1qks_A          246 ETS  248 (567)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            776

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.73  E-value=5.5e-07  Score=47.22  Aligned_cols=85  Identities=6%  Similarity=-0.015  Sum_probs=54.2

Q ss_pred             CceeE-EeeCCCcEEEeeCCC--ceee--eeeeccC-----CCcEEEEEecCCCCEEE-EEcCCCeEEEEEcCCc---cc
Q psy7058           1 MGLLA-TTSADQTARIWNTED--FSLV--RELGTAN-----QRWVWDAAFTLDSKFLL-TASSDGVARLWNIETG---EV   66 (85)
Q Consensus         1 g~~l~-~~~~~~~i~~~d~~~--~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~---~~   66 (85)
                      |++++ +...++.+.+|++..  ++..  ..+....     ...+..++|+|+|++++ +...++.|.+|++...   +.
T Consensus       198 g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~  277 (347)
T 3hfq_A          198 GQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTL  277 (347)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEE
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEE
Confidence            34444 456678899998763  4332  2222101     13578899999999774 5556899999998632   33


Q ss_pred             cccccccccceeEEEEeCC
Q psy7058          67 DKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        67 ~~~~~~~~~~v~~~~~~~~   85 (85)
                      +..+..+...+..++|+|.
T Consensus       278 ~~~~~~~~~~~~~~~~spd  296 (347)
T 3hfq_A          278 IQQISTEGDFPRDFDLDPT  296 (347)
T ss_dssp             EEEEECSSSCCCEEEECTT
T ss_pred             eEEEecCCCCcCeEEECCC
Confidence            4444444556778888873

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.71  E-value=1.1e-06  Score=46.58  Aligned_cols=77  Identities=10%  Similarity=0.084  Sum_probs=52.4

Q ss_pred             CCCcEEEeeCC-Cceeeeeeec---cCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcC-Ccccc--cccc--cccccee
Q psy7058           9 ADQTARIWNTE-DFSLVRELGT---ANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIE-TGEVD--KEYS--GHQKAIT   78 (85)
Q Consensus         9 ~~~~i~~~d~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~-~~~~~--~~~~--~~~~~v~   78 (85)
                      .++.+.+|++. +++....+..   .....+..+.|+|+|+++++++. ++.|++|++. +++..  ..+.  .+...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            68899999987 4554433321   13456899999999998877654 6799999997 55432  2232  2345678


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      .++|+|.
T Consensus       197 ~~~~spd  203 (365)
T 1jof_A          197 WVAMHPT  203 (365)
T ss_dssp             EEEECTT
T ss_pred             EeEECCC
Confidence            8888873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.66  E-value=5.9e-07  Score=47.01  Aligned_cols=80  Identities=18%  Similarity=0.155  Sum_probs=53.6

Q ss_pred             CceeEEeeCC-----CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC-----------------------
Q psy7058           1 MGLLATTSAD-----QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-----------------------   52 (85)
Q Consensus         1 g~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------   52 (85)
                      |++|+..+.+     ..|.+||+.+++....... . . +..+.|+|+++.++..+.                       
T Consensus        70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~  146 (347)
T 2gop_A           70 GKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF  146 (347)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S-E-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred             CCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence            4566655543     2488889887776554443 2 3 889999999998887653                       


Q ss_pred             ----CCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          53 ----DGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        53 ----~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                          ...|.+|++..++.+..+.. . .+..+.|+|.
T Consensus       147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd  181 (347)
T 2gop_A          147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD  181 (347)
T ss_dssp             ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT
T ss_pred             ccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC
Confidence                25688999987765344443 3 6777788763

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.66  E-value=2.5e-07  Score=53.17  Aligned_cols=64  Identities=5%  Similarity=-0.179  Sum_probs=48.3

Q ss_pred             CceeEEeeCC---------CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058           1 MGLLATTSAD---------QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus         1 g~~l~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      |++|+.++.+         +.+.+||+.+++... +.. +...+....|+|||+.++.+ .++.|++|++..+...
T Consensus        73 g~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~-~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~  145 (740)
T 4a5s_A           73 GQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY  145 (740)
T ss_dssp             SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred             CCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-ccc-CCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE
Confidence            4567776665         556799999887644 332 45679999999999999887 5689999999876543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.65  E-value=3.5e-06  Score=43.96  Aligned_cols=82  Identities=11%  Similarity=0.045  Sum_probs=55.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC----CeEEEEEcCCcccccccc--cccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD----GVARLWNIETGEVDKEYS--GHQK   75 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~~--~~~~   75 (85)
                      ++++++..++.|.+||..+++....... ....+..+.+++++.++++...+    +.|.+||...+.....+.  ....
T Consensus        57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  135 (333)
T 2dg1_A           57 QLFLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY  135 (333)
T ss_dssp             CEEEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred             CEEEEECCCCEEEEEeCCCCcEEEEeeC-CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence            4455677788999999887765443322 44568999999999887776665    689999987665431221  2334


Q ss_pred             ceeEEEEeC
Q psy7058          76 AITSLAFCD   84 (85)
Q Consensus        76 ~v~~~~~~~   84 (85)
                      .++.++++|
T Consensus       136 ~~~~i~~d~  144 (333)
T 2dg1_A          136 CIDDMVFDS  144 (333)
T ss_dssp             CEEEEEECT
T ss_pred             cccceEECC
Confidence            567777665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.63  E-value=6e-07  Score=51.39  Aligned_cols=83  Identities=11%  Similarity=-0.023  Sum_probs=53.8

Q ss_pred             CceeEEeeCCC-----cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCe----------------EEEE
Q psy7058           1 MGLLATTSADQ-----TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGV----------------ARLW   59 (85)
Q Consensus         1 g~~l~~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------i~~~   59 (85)
                      |++|+.+..++     .|++||+.+++....... . ..+..+.|+|||+.++.+..+..                |++|
T Consensus       136 g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~  213 (710)
T 2xdw_A          136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (710)
T ss_dssp             SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEE
Confidence            45666444332     899999999887654322 1 12567899999999888776654                9999


Q ss_pred             EcCCcccc--cccc--ccccceeEEEEeCC
Q psy7058          60 NIETGEVD--KEYS--GHQKAITSLAFCDF   85 (85)
Q Consensus        60 ~~~~~~~~--~~~~--~~~~~v~~~~~~~~   85 (85)
                      ++.++...  ..+.  .+...+..+.|+|.
T Consensus       214 ~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD  243 (710)
T 2xdw_A          214 VLGTDQSEDILCAEFPDEPKWMGGAELSDD  243 (710)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred             ECCCCcccceEEeccCCCCeEEEEEEEcCC
Confidence            99776532  1122  23344667777763

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.62  E-value=2.9e-06  Score=44.54  Aligned_cols=82  Identities=9%  Similarity=0.192  Sum_probs=57.2

Q ss_pred             ceeEEee-CCCcEEEeeCCCceeeeeeecc---------CCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           2 GLLATTS-ADQTARIWNTEDFSLVRELGTA---------NQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         2 ~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      +.+++.+ .++.|++|| .+++....+...         .-.....++++++ +..+++...++.|++|+..+++.+..+
T Consensus       156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            4556665 588999999 456665555321         1123788999998 777778788899999999877776665


Q ss_pred             c--ccccceeEEEEeC
Q psy7058          71 S--GHQKAITSLAFCD   84 (85)
Q Consensus        71 ~--~~~~~v~~~~~~~   84 (85)
                      .  .+...+..++|+|
T Consensus       235 ~~~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          235 KHASFGRNVFAISYIP  250 (329)
T ss_dssp             CCTTTTTCEEEEEEET
T ss_pred             eccccCCCcceeeecC
Confidence            3  3455677777765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.62  E-value=1.2e-07  Score=50.32  Aligned_cols=84  Identities=13%  Similarity=0.169  Sum_probs=53.5

Q ss_pred             CceeEEeeCCCcEEEeeCC-CceeeeeeeccCCCcEEEEEecCCCCE--EEEEc-------------CCCeEEEEEcC-C
Q psy7058           1 MGLLATTSADQTARIWNTE-DFSLVRELGTANQRWVWDAAFTLDSKF--LLTAS-------------SDGVARLWNIE-T   63 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~~~i~~~~~~-~   63 (85)
                      |++|++++.+ .+.+|++. +++...............+.++|+|+.  +++++             .++.+.+|++. +
T Consensus        51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~  129 (365)
T 1jof_A           51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET  129 (365)
T ss_dssp             SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred             CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence            4567778777 89999986 666543322111112345889999984  44543             68899999997 3


Q ss_pred             cccccccc----ccccceeEEEEeCC
Q psy7058          64 GEVDKEYS----GHQKAITSLAFCDF   85 (85)
Q Consensus        64 ~~~~~~~~----~~~~~v~~~~~~~~   85 (85)
                      ++....+.    .+...+..++|+|.
T Consensus       130 g~~~~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A          130 GKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             CCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             CcCcceEeeEEeCCCCcceEEEECCC
Confidence            54433332    13457788888873

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.61  E-value=2.4e-07  Score=52.87  Aligned_cols=83  Identities=11%  Similarity=-0.011  Sum_probs=54.1

Q ss_pred             CceeE-----EeeCCCcEEEeeCCCceee-eeeeccCCCcEEEEEecCCCCEEEEEcCCCe-------------EEEEEc
Q psy7058           1 MGLLA-----TTSADQTARIWNTEDFSLV-RELGTANQRWVWDAAFTLDSKFLLTASSDGV-------------ARLWNI   61 (85)
Q Consensus         1 g~~l~-----~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------i~~~~~   61 (85)
                      |++|+     .|+.+..|++||+.+++.. .....  ......+.|+|||+.++..+.+..             |++|++
T Consensus       132 G~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l  209 (695)
T 2bkl_A          132 GKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL  209 (695)
T ss_dssp             SSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred             CCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence            45565     4444578999999988765 21111  111257899999999988877655             999999


Q ss_pred             CCccc----cccccccccceeEEEEeCC
Q psy7058          62 ETGEV----DKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        62 ~~~~~----~~~~~~~~~~v~~~~~~~~   85 (85)
                      .++..    +.....+...+..+.|+|.
T Consensus       210 ~t~~~~~~lv~~~~~~~~~~~~~~~SpD  237 (695)
T 2bkl_A          210 GTEPSKDTVVHERTGDPTTFLQSDLSRD  237 (695)
T ss_dssp             TSCGGGCEEEECCCCCTTCEEEEEECTT
T ss_pred             CCCchhceEEEecCCCCEEEEEEEECCC
Confidence            87653    2222233456777788763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.60  E-value=1.6e-06  Score=49.09  Aligned_cols=66  Identities=14%  Similarity=0.059  Sum_probs=44.6

Q ss_pred             CceeEEeeCC--------CcEEEeeCC-Cc--eeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC--eEEEEEcCCccc
Q psy7058           1 MGLLATTSAD--------QTARIWNTE-DF--SLVRELGTANQRWVWDAAFTLDSKFLLTASSDG--VARLWNIETGEV   66 (85)
Q Consensus         1 g~~l~~~~~~--------~~i~~~d~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~   66 (85)
                      |++|+.++.+        ..|++||+. ++  .....+...+...+..+.|+|||+++++++.++  .|..|+...++.
T Consensus       199 G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          199 GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred             CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence            4667766644        479999998 56  133333332456689999999999777887777  566666655543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.60  E-value=5.4e-06  Score=43.52  Aligned_cols=74  Identities=11%  Similarity=0.010  Sum_probs=51.9

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc-ccccc---------cccccceeEE
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEY---------SGHQKAITSL   80 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~---------~~~~~~v~~~   80 (85)
                      +.|.+||..+++.........-.....+++++++.++++...++.|+.|+..... .+..+         ..+......+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            3799999988887665543333467899999999988888888999999975332 33333         1233356677


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +++|
T Consensus       149 a~~~  152 (329)
T 3fvz_A          149 AVEP  152 (329)
T ss_dssp             EECT
T ss_pred             EEeC
Confidence            7765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.60  E-value=4.3e-07  Score=48.39  Aligned_cols=60  Identities=15%  Similarity=0.260  Sum_probs=46.9

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc----------CCCeEEEEEcCCcccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS----------SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .|+.+++||..+++....+.. ...+  .+.++|++++++.+.          .++.|.+||..+.+....+.
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS   98 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred             ccCeEEEEECCCCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence            367899999999888877765 3333  899999999988875          25679999998877666554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.49  E-value=1.1e-05  Score=41.28  Aligned_cols=81  Identities=10%  Similarity=0.246  Sum_probs=54.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCC-eEEEEEcCCccccccccccc--cce
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDG-VARLWNIETGEVDKEYSGHQ--KAI   77 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~--~~v   77 (85)
                      +.+++...++.|++||.. ++....+... .......++++++|.++++...++ .|.+|+. +++.+..+..+.  ..+
T Consensus       176 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~  253 (286)
T 1q7f_A          176 EIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC  253 (286)
T ss_dssp             EEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred             CEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence            455666678899999974 4554444331 124578999999999888887775 9999995 455555554332  235


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      ..++++|
T Consensus       254 ~~i~~~~  260 (286)
T 1q7f_A          254 FDVALMD  260 (286)
T ss_dssp             EEEEEET
T ss_pred             eeEEECC
Confidence            6777765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.48  E-value=1.2e-05  Score=41.19  Aligned_cols=73  Identities=12%  Similarity=0.210  Sum_probs=50.4

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc--ccccceeEEEEeC
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS--GHQKAITSLAFCD   84 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~   84 (85)
                      ++.|.+|| .+++....+..........+.+++++..+++...++.|.+|+.. ++....+.  .+...+..++++|
T Consensus        99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~  173 (286)
T 1q7f_A           99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND  173 (286)
T ss_dssp             GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS
T ss_pred             CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC
Confidence            78899999 55666655543333467899999999988887788999999964 44444432  2334566777665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.44  E-value=1.6e-05  Score=42.19  Aligned_cols=82  Identities=10%  Similarity=-0.027  Sum_probs=56.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEE--EecCCCCEEEEE----------------------cCCCeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDA--AFTLDSKFLLTA----------------------SSDGVA   56 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------------------~~~~~i   56 (85)
                      |+.|+.++.++.+++||+.+++....... ....+...  .+++++..++..                      ..+..|
T Consensus        92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (388)
T 3pe7_A           92 DDALFYVKDGRNLMRVDLATLEENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL  170 (388)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcceeeeec-hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence            46788888888999999998877655543 33333333  348899887642                      234679


Q ss_pred             EEEEcCCccccccccccccceeEEEEeC
Q psy7058          57 RLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .+||+.+++.. .+..+...+..++|+|
T Consensus       171 ~~~d~~~g~~~-~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          171 MRVDLKTGEST-VILQENQWLGHPIYRP  197 (388)
T ss_dssp             EEEETTTCCEE-EEEEESSCEEEEEEET
T ss_pred             EEEECCCCceE-EeecCCccccccEECC
Confidence            99999877543 3334556678888887

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.38  E-value=1.4e-05  Score=41.18  Aligned_cols=61  Identities=5%  Similarity=0.019  Sum_probs=47.8

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      +++++..++.|..||..++  ...+.. ....+..+.+++++.++++...++.|.+|+..+++.
T Consensus        42 l~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ--LSPEMH-PSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC--EEEEES-SCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             EEEEeCCCCEEEEEECCCC--eEEEEC-CCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence            5677788899999998876  444443 445688999999999888777778999999876653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.35  E-value=1e-05  Score=42.40  Aligned_cols=77  Identities=14%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             CceeEEeeCC--------CcEEEeeCCCceeeeeeeccCCCcEEE-EEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSAD--------QTARIWNTEDFSLVRELGTANQRWVWD-AAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~--------~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |++|+..+.+        ..|.+||  +++... +...+...+.. +.|+ ++ .++++..++.+++| +.+++. ..+.
T Consensus       226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~  298 (347)
T 2gop_A          226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMG-ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIA  298 (347)
T ss_dssp             SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE-SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEE
T ss_pred             CCEEEEEEccccCCccccceEEEEC--CCceEe-ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEe
Confidence            4556555533        3688888  454433 32224556775 8899 88 88888899999999 875543 3333


Q ss_pred             ccccceeEEEEeC
Q psy7058          72 GHQKAITSLAFCD   84 (85)
Q Consensus        72 ~~~~~v~~~~~~~   84 (85)
                      .+...|.+++|+|
T Consensus       299 ~~~~~v~~~~~s~  311 (347)
T 2gop_A          299 KGRHWIMGFDVDE  311 (347)
T ss_dssp             CSSSEEEEEEESS
T ss_pred             cCCCeEEeeeeeC
Confidence            3466777777765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.31  E-value=4.5e-05  Score=40.14  Aligned_cols=72  Identities=10%  Similarity=0.057  Sum_probs=50.2

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc-c-ccccccceeEEEEeC
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK-E-YSGHQKAITSLAFCD   84 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~v~~~~~~~   84 (85)
                      +.|.++|..+++....+..........++++|++..+.....  .|.++|..+++... . +.........++++|
T Consensus       203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence            689999999888776665422335789999999988877665  89999998776432 1 111134566777765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.31  E-value=4.8e-05  Score=43.15  Aligned_cols=69  Identities=14%  Similarity=0.030  Sum_probs=53.6

Q ss_pred             CceeEEeeCCCcEEEeeCC--CceeeeeeeccCCCcEEEEEec----CCCCEEEEEcC-CCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTE--DFSLVRELGTANQRWVWDAAFT----LDSKFLLTASS-DGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~   71 (85)
                      |+++++++.++.|.+||+.  +.+...++..  ......+.++    |+|++++++.. ++.+.++|..+.+.+..+.
T Consensus       208 Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~  283 (567)
T 1qks_A          208 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  283 (567)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence            5678888899999999995  7777777765  2235789999    69998876654 5899999988877766554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.29  E-value=2.1e-05  Score=41.41  Aligned_cols=80  Identities=13%  Similarity=-0.001  Sum_probs=56.4

Q ss_pred             eeEEee--CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC----------CeEEEEEcCCccccccc
Q psy7058           3 LLATTS--ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD----------GVARLWNIETGEVDKEY   70 (85)
Q Consensus         3 ~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~   70 (85)
                      .+..+.  .++.|.++|..+++....+...  .....+.++++|+++++...+          +.|.++|..+++....+
T Consensus       142 ~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~  219 (328)
T 3dsm_A          142 YVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF  219 (328)
T ss_dssp             EEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence            444444  4789999999998887776642  234678889999877766544          78999999888766555


Q ss_pred             ccc-ccceeEEEEeC
Q psy7058          71 SGH-QKAITSLAFCD   84 (85)
Q Consensus        71 ~~~-~~~v~~~~~~~   84 (85)
                      ... ....+.++|+|
T Consensus       220 ~~~~g~~p~~la~~~  234 (328)
T 3dsm_A          220 KFKLGDWPSEVQLNG  234 (328)
T ss_dssp             ECCTTCCCEEEEECT
T ss_pred             ecCCCCCceeEEEec
Confidence            422 23567788776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.29  E-value=3.8e-06  Score=44.51  Aligned_cols=67  Identities=12%  Similarity=-0.021  Sum_probs=44.9

Q ss_pred             CceeEEeeCC---CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc
Q psy7058           1 MGLLATTSAD---QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK   68 (85)
Q Consensus         1 g~~l~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   68 (85)
                      |++|+.....   ..+.+||+.+++....... .........|+|+|+.++..+.++.+++|++..++...
T Consensus        47 G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           47 GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             SCEEEEEECTTSSCEEEEEETTTTEEEECCCS-SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             CCEEEEEEecCCCceEEEEECCCCcEEEeecC-CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            4555554332   3688889888765443322 22212236799999999998888899999998776443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.27  E-value=1.5e-06  Score=46.51  Aligned_cols=67  Identities=15%  Similarity=0.076  Sum_probs=42.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      ++.+++++.|+.++.||..+++..-++..   ..+.+..+..++..++.++.++.++.||..+++.+..+
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~   75 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL   75 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence            46788999999999999999988777654   22333334456767777789999999999877654433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.26  E-value=2.1e-05  Score=40.55  Aligned_cols=77  Identities=12%  Similarity=0.055  Sum_probs=52.1

Q ss_pred             ceeEEeeCCCcEEEeeCC-Ccee---eeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccce
Q psy7058           2 GLLATTSADQTARIWNTE-DFSL---VRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      +.+++...++.|.+|++. +++.   ...+ .........++++++|.+.++.  ++.|.+|+.. ++.+..+..+.. +
T Consensus       184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~  258 (296)
T 3e5z_A          184 NLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-T  258 (296)
T ss_dssp             CEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-C
T ss_pred             CEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-c
Confidence            455666677889999986 4443   2223 2133345678999999876665  7899999986 666666665555 7


Q ss_pred             eEEEEe
Q psy7058          78 TSLAFC   83 (85)
Q Consensus        78 ~~~~~~   83 (85)
                      .+++|.
T Consensus       259 ~~~~f~  264 (296)
T 3e5z_A          259 SNLCFG  264 (296)
T ss_dssp             CEEEEE
T ss_pred             eeEEEE
Confidence            777773

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.25  E-value=5.4e-05  Score=39.13  Aligned_cols=68  Identities=13%  Similarity=0.113  Sum_probs=54.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |+++++...++.+..||.. ++.+.++...  .....+...+++..++++..++.|..+|..+++.+.++.
T Consensus       136 G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          136 GNYLVPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            4678888889999999988 8888777652  234456778899999988888899999998888776664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.19  E-value=7.4e-05  Score=40.24  Aligned_cols=57  Identities=7%  Similarity=-0.060  Sum_probs=44.1

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc----------CCCeEEEEEcCCcccccccc
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS----------SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .+.++|..+++....+... ..+  .+.++||++.++...          .++.|.++|..+.+....+.
T Consensus        48 ~v~v~D~~t~~~~~~i~~g-~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~  114 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGG-FLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE  114 (373)
T ss_pred             EEEEEECCCCeEEEEecCC-CCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE
Confidence            7899999999888777653 233  899999999988775          35789999998776665443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.19  E-value=1.4e-05  Score=41.67  Aligned_cols=73  Identities=12%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             eCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058           8 SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus         8 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      +.++.++.|   .++....+.. .......+.|++++.+++++..++.|.+||...++.......+...+..++++|
T Consensus        24 ~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~   96 (333)
T 2dg1_A           24 ISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK   96 (333)
T ss_dssp             CCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT
T ss_pred             eecccCccc---ccceeEEEec-cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC
Confidence            445566666   2344444444 344578999999999888888889999999887664433323456778888765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.16  E-value=2.1e-05  Score=42.72  Aligned_cols=59  Identities=10%  Similarity=-0.010  Sum_probs=47.1

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc----------CCCeEEEEEcCCcccccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS----------SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ++.+.+.|..+.+.+..+..+.. + . +.++|+|+.++.+.          .++.|.+||..+.+....+.
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~  126 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE  126 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence            67899999999999988886443 3 4 99999999887665          35689999999888766654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.16  E-value=9.9e-05  Score=38.09  Aligned_cols=79  Identities=8%  Similarity=0.085  Sum_probs=53.2

Q ss_pred             EEeeCCCcEEEeeCC-Ccee-----eeeeeccCC-CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccce
Q psy7058           5 ATTSADQTARIWNTE-DFSL-----VRELGTANQ-RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~-~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      ++...++.|.+||.. +++.     ...+.. .. .....++++++|.+.++...++.|..|+..+++....+..+...+
T Consensus       192 v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~  270 (314)
T 1pjx_A          192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP  270 (314)
T ss_dssp             EEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCE
T ss_pred             EEECCCCeEEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCc
Confidence            344456789999865 3332     111111 22 457889999999988887778899999987676665555555677


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      .+++|+|
T Consensus       271 ~~i~~~~  277 (314)
T 1pjx_A          271 SNLHFKP  277 (314)
T ss_dssp             EEEEECT
T ss_pred             eeEEECC
Confidence            7787765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.15  E-value=9.8e-05  Score=37.36  Aligned_cols=82  Identities=10%  Similarity=-0.049  Sum_probs=51.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.+++...++.|.+||............ .......++++++|..+++...++.|..|+............+...+..++
T Consensus       162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~  240 (270)
T 1rwi_B          162 NVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVA  240 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEEECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEE
T ss_pred             CEEEEECCCCEEEEEecCCCceEeeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEE
Confidence            4455555567899999776554332222 224578999999998777777788999999865432221112224566676


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      +++
T Consensus       241 ~~~  243 (270)
T 1rwi_B          241 VDS  243 (270)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.13  E-value=0.00015  Score=39.06  Aligned_cols=57  Identities=12%  Similarity=0.050  Sum_probs=47.3

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEc-CCCeEEEEEcCCcccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTAS-SDGVARLWNIETGEVDKE   69 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~   69 (85)
                      +.|.++|+.+.+.+..+..  ......+.|+|||+ .++++. .++.|.++|..+++.+..
T Consensus       298 ~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          298 KEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            5799999999998888865  23478999999999 677766 489999999999988877

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.12  E-value=5.4e-06  Score=43.94  Aligned_cols=82  Identities=10%  Similarity=-0.012  Sum_probs=52.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEE-------------------EEecCCCCEEEEE-----cCCCeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWD-------------------AAFTLDSKFLLTA-----SSDGVA   56 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-----~~~~~i   56 (85)
                      |++|+..+.++.+++||+.+++....... .......                   ..++|++..++..     ..+..|
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEec-ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            46788888888999999988766544432 2221212                   3456777665543     345689


Q ss_pred             EEEEcCCccccccccccccceeEEEEeC
Q psy7058          57 RLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .+||+..++..... .+...+..+.|+|
T Consensus       171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp  197 (396)
T 3c5m_A          171 IKVDIETGELEVIH-QDTAWLGHPIYRP  197 (396)
T ss_dssp             EEEETTTCCEEEEE-EESSCEEEEEEET
T ss_pred             EEEECCCCcEEeec-cCCcccccceECC
Confidence            99999877644333 3556677788876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.09  E-value=3.7e-05  Score=41.50  Aligned_cols=57  Identities=9%  Similarity=-0.231  Sum_probs=47.4

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc----------CCCeEEEEEcCCcccccccc
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS----------SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .+.+.|..+++.+.++..+.. +  .+.++|+++.++.+.          .++.|.++|..+++....+.
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~  113 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE  113 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            788999999999999887443 4  799999999888775          36789999999998877765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.04  E-value=0.0001  Score=40.09  Aligned_cols=70  Identities=10%  Similarity=0.071  Sum_probs=52.4

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEE-cCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTA-SSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      ..|.+.|+.+.+.+..+..+  ...+.+.++++++ .+++. ..++.|.++|..+++.+.++... ..-+.|.++
T Consensus       311 ~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s  382 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITT  382 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEE
T ss_pred             CEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEEC
Confidence            56889999999999888763  3578999999986 56554 45889999999999988877632 333334444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.02  E-value=0.00018  Score=37.31  Aligned_cols=80  Identities=11%  Similarity=0.044  Sum_probs=56.1

Q ss_pred             eEEeeCCCcEEEeeC--CCceee--eeeec--cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccce
Q psy7058           4 LATTSADQTARIWNT--EDFSLV--RELGT--ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         4 l~~~~~~~~i~~~d~--~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      +++...++.|..||.  .++...  ..+..  ........+++.++|.+.++....+.|..|+..+++.+..+......+
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~  243 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT  243 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence            345556678888886  444332  11111  123456789999999888777778889999998888887777666778


Q ss_pred             eEEEEe
Q psy7058          78 TSLAFC   83 (85)
Q Consensus        78 ~~~~~~   83 (85)
                      ++++|.
T Consensus       244 t~~~f~  249 (297)
T 3g4e_A          244 TSCCFG  249 (297)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            899986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.01  E-value=0.00023  Score=41.07  Aligned_cols=51  Identities=8%  Similarity=0.041  Sum_probs=36.0

Q ss_pred             EEEeeCCCceee--eeeecc-CCCcEEEEEecCCCCEEEEEcC-----CCeEEEEEcCC
Q psy7058          13 ARIWNTEDFSLV--RELGTA-NQRWVWDAAFTLDSKFLLTASS-----DGVARLWNIET   63 (85)
Q Consensus        13 i~~~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~   63 (85)
                      |++|++.+++..  ...... +......+.|+|+|++++..+.     +..+++||+..
T Consensus       210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             EEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            999999876532  111211 3445788999999998877654     56899999876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.00  E-value=4.1e-05  Score=42.09  Aligned_cols=58  Identities=9%  Similarity=-0.053  Sum_probs=46.9

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc----------CCCeEEEEEcCCcccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS----------SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+.++|..+.+.+..+..+. .+  .+.++||++.++.+.          .++.|.++|..+.+....+.
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~  166 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE  166 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE
T ss_pred             CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE
Confidence            689999999999999888733 34  799999999887765          36689999999887766553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.98  E-value=0.00017  Score=36.51  Aligned_cols=64  Identities=6%  Similarity=-0.098  Sum_probs=45.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      ..+++...++.|.+||........ ...........++++++|..+++...++.|++++....+.
T Consensus       204 ~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          204 TVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            345555567789999986544332 2211224578999999999888888899999999876553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.97  E-value=6.9e-05  Score=43.40  Aligned_cols=82  Identities=15%  Similarity=0.006  Sum_probs=49.3

Q ss_pred             CceeEEeeCC-----CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC--------------eEEEEEc
Q psy7058           1 MGLLATTSAD-----QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG--------------VARLWNI   61 (85)
Q Consensus         1 g~~l~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~i~~~~~   61 (85)
                      |++|+.+..+     ..|++||+.+++......  .......+.|+|| +.++.+..+.              .|++|++
T Consensus       174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l  250 (741)
T 1yr2_A          174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL  250 (741)
T ss_dssp             SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence            4556554433     359999999887754321  1111246889999 8887776544              3888998


Q ss_pred             CCcccc--ccccc--cccceeEEEEeCC
Q psy7058          62 ETGEVD--KEYSG--HQKAITSLAFCDF   85 (85)
Q Consensus        62 ~~~~~~--~~~~~--~~~~v~~~~~~~~   85 (85)
                      .++...  ..+..  +...+..+.|+|.
T Consensus       251 gt~~~~~~lv~~~~~~~~~~~~~~~SpD  278 (741)
T 1yr2_A          251 GTPQSADQPVFATPELPKRGHGASVSSD  278 (741)
T ss_dssp             TSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred             CCCchhCEEEeccCCCCeEEEEEEECCC
Confidence            765421  12222  2224667777763

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.97  E-value=0.00024  Score=38.42  Aligned_cols=70  Identities=7%  Similarity=-0.059  Sum_probs=51.9

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEc-CCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTAS-SDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      ..+.++|+.+.+.+..+..+.  ....+.++++++ .+++.. .++.|.++|+.+.+.+..+.... .-..+++.
T Consensus       294 ~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~  365 (368)
T 1mda_H          294 ENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQ  365 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECC
T ss_pred             CCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEee
Confidence            345699999998888877522  478899999997 455666 58999999999999888887433 33344443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.97  E-value=0.00021  Score=41.20  Aligned_cols=64  Identities=8%  Similarity=-0.101  Sum_probs=41.9

Q ss_pred             CceeEEeeCCCc-------------EEEeeCCCceee--eeeec-cCCCcEEEEEecCCCCEEEEEcCCC----eEEEEE
Q psy7058           1 MGLLATTSADQT-------------ARIWNTEDFSLV--RELGT-ANQRWVWDAAFTLDSKFLLTASSDG----VARLWN   60 (85)
Q Consensus         1 g~~l~~~~~~~~-------------i~~~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~   60 (85)
                      |+.|+.++.+..             |++|++.++...  ..... .+...+..+.|+|+|++++..+.++    .+++++
T Consensus       179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKR  258 (695)
T ss_dssp             SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEEC
T ss_pred             CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEc
Confidence            456777776654             999999877632  22211 1334688999999999887766554    566666


Q ss_pred             cCCc
Q psy7058          61 IETG   64 (85)
Q Consensus        61 ~~~~   64 (85)
                      ...+
T Consensus       259 ~~~~  262 (695)
T 2bkl_A          259 PGEK  262 (695)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            5443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.81  E-value=0.0006  Score=35.17  Aligned_cols=61  Identities=8%  Similarity=0.079  Sum_probs=43.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE-EEEEcCCCeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF-LLTASSDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~   63 (85)
                      +++++...++.|..||..+++....+.. ....+.++.+++++.. +++...++.|..|++..
T Consensus       238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          238 NLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCEEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            4455555678899999886766555554 3356889999999984 45555668899999764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.81  E-value=0.00048  Score=37.55  Aligned_cols=61  Identities=16%  Similarity=0.137  Sum_probs=41.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC--eEEEEEcCCcc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG--VARLWNIETGE   65 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~   65 (85)
                      +++++...++.|+.||..++........ ... .. ++|++++..++.++.++  .|..++...+.
T Consensus       143 ~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          143 TVLAYQRDDPRVRLISVDDNKVTTVHPG-FKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEET-CCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CEEEEecCCCcEEEEECCCCEEEEeecc-CCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            4455556668899999887666544433 222 23 88999999888887755  78888876543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.79  E-value=0.00024  Score=39.15  Aligned_cols=58  Identities=14%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEc-CCCeEEEEEcCCccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTAS-SDGVARLWNIETGEVDKEY   70 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~   70 (85)
                      +.+.+.|+.+.+.+.++...  .....+.++|+++ .+++.. .++.|.++|..+.+.+..+
T Consensus       350 ~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          350 RFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            57999999999998888752  2478899999998 777776 5899999999999988776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.62  E-value=9.3e-06  Score=43.48  Aligned_cols=65  Identities=9%  Similarity=0.111  Sum_probs=34.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+++++.++.++.||..+++....+.. ..    ....+|++..+++++.++.++.||..+++.+..+.
T Consensus        93 ~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           93 GILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             --CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            3566778889999999999988766554 21    13345677888888889999999999887665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.61  E-value=0.00035  Score=40.36  Aligned_cols=72  Identities=7%  Similarity=0.023  Sum_probs=43.8

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCC-------------eEEEEEcCCcccc--cccc--c
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG-------------VARLWNIETGEVD--KEYS--G   72 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~i~~~~~~~~~~~--~~~~--~   72 (85)
                      ...|+++|+.+++.......  ......+.|+ |++.++....+.             .|++|++.+....  ..+.  .
T Consensus       154 ~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~  230 (693)
T 3iuj_A          154 WREIHLMDVESKQPLETPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP  230 (693)
T ss_dssp             EEEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG
T ss_pred             eEEEEEEECCCCCCCccccC--CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC
Confidence            35799999999876543211  1112467899 999888776653             4899998765431  1222  2


Q ss_pred             -cccceeEEEEeC
Q psy7058          73 -HQKAITSLAFCD   84 (85)
Q Consensus        73 -~~~~v~~~~~~~   84 (85)
                       +......+.|+|
T Consensus       231 ~~~~~~~~~~~Sp  243 (693)
T 3iuj_A          231 AQHHRYVGATVTE  243 (693)
T ss_dssp             GGCCSEEEEEECT
T ss_pred             CCCeEEEEEEEcC
Confidence             223355667766

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.60  E-value=0.0014  Score=33.41  Aligned_cols=82  Identities=7%  Similarity=-0.090  Sum_probs=48.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      +.+++...++.|.+||.. ++............+..+.+.+++...++...++.|..|+.........+......+..++
T Consensus        27 ~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~  105 (299)
T 2z2n_A           27 KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGIT  105 (299)
T ss_dssp             CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred             CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeE
Confidence            334444446789999977 4432211111335688999999999888877788899998752211111212234555666


Q ss_pred             EeC
Q psy7058          82 FCD   84 (85)
Q Consensus        82 ~~~   84 (85)
                      +.+
T Consensus       106 ~~~  108 (299)
T 2z2n_A          106 EGP  108 (299)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.54  E-value=0.0018  Score=33.06  Aligned_cols=81  Identities=6%  Similarity=-0.026  Sum_probs=49.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc-ccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE-YSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~v~~~   80 (85)
                      +++++...++.+..||. +++............+..+.+.+++...++...++.|..++. +++.... .......+..+
T Consensus       111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i  188 (299)
T 2z2n_A          111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI  188 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence            34455555678888887 444332221113345789999999988877777789999998 5543321 22223345566


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ++.+
T Consensus       189 ~~~~  192 (299)
T 2z2n_A          189 TKGN  192 (299)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            6544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.53  E-value=0.00024  Score=41.22  Aligned_cols=62  Identities=15%  Similarity=0.181  Sum_probs=47.2

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH   73 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (85)
                      ++.|..||+.+++..-+.....  +...-.+...+..++.++.|+.++.||.++++.+.+++..
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence            4789999999999887766522  2222344556778888999999999999999988877643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.41  E-value=0.0033  Score=33.09  Aligned_cols=78  Identities=9%  Similarity=-0.033  Sum_probs=50.9

Q ss_pred             EEeeCCCcEEEeeCC--Cc-eee--eeeec--cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccce
Q psy7058           5 ATTSADQTARIWNTE--DF-SLV--RELGT--ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~--~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      ++...++.|.+||..  ++ ...  ..+..  ........+.+.++|.+.++...++.|..|+. +++.+..+......+
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~  273 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT  273 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence            444556789999975  44 321  11111  12344678899999987777666778999998 566666665555678


Q ss_pred             eEEEEe
Q psy7058          78 TSLAFC   83 (85)
Q Consensus        78 ~~~~~~   83 (85)
                      .+++|.
T Consensus       274 ~~~af~  279 (326)
T 2ghs_A          274 TCPAFI  279 (326)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            888886

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.34  E-value=0.0039  Score=32.44  Aligned_cols=82  Identities=6%  Similarity=0.052  Sum_probs=57.4

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCC----CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc---
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQ----RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ---   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---   74 (85)
                      ++++.+..++.+.++|..+.+....+.....    ..++.+.+. ++...+..-.++.|.+.|..+++.+..+....   
T Consensus       117 ~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~  195 (266)
T 2iwa_A          117 KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRK  195 (266)
T ss_dssp             SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHH
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccc
Confidence            4555666678999999999888777764211    136677777 77666666567899999999998776665221   


Q ss_pred             ----------cceeEEEEeC
Q psy7058          75 ----------KAITSLAFCD   84 (85)
Q Consensus        75 ----------~~v~~~~~~~   84 (85)
                                .-.+.++|+|
T Consensus       196 ~~~~~~~~~~~v~nGIa~~~  215 (266)
T 2iwa_A          196 KLIDEGFRDIDVLNGIAWDQ  215 (266)
T ss_dssp             HHHHTTCTTCCCEEEEEEET
T ss_pred             ccccccccccCceEEEEEcC
Confidence                      2446788875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.32  E-value=0.0041  Score=32.33  Aligned_cols=82  Identities=13%  Similarity=0.157  Sum_probs=55.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccC-C---CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc----
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTAN-Q---RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH----   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----   73 (85)
                      +.|+.+..+..|.++|..+.+....+.... .   ..++.+.+. +|...+..-.+..|.+.|..+++.+..+...    
T Consensus       137 ~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~  215 (262)
T 3nol_A          137 QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILA  215 (262)
T ss_dssp             SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGG
T ss_pred             CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcc
Confidence            445555557789999998888877765421 1   235567776 7776666656789999999998876655421    


Q ss_pred             --------ccceeEEEEeC
Q psy7058          74 --------QKAITSLAFCD   84 (85)
Q Consensus        74 --------~~~v~~~~~~~   84 (85)
                              .+-.+.++|+|
T Consensus       216 ~~~~~~~~~~vlNGIA~dp  234 (262)
T 3nol_A          216 EAGPLPSPIDVLNGIAWDK  234 (262)
T ss_dssp             GSCSCCSSCCCEEEEEEET
T ss_pred             ccccccCcCCceEEEEEcC
Confidence                    12447788876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.24  E-value=0.0053  Score=31.84  Aligned_cols=77  Identities=9%  Similarity=-0.012  Sum_probs=48.2

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc----ccccee
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG----HQKAIT   78 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~v~   78 (85)
                      ++++...++.|+.||..+++. ..+.  ....+..+.+++++.+++..  +..|.+||..+++.......    ....++
T Consensus        27 l~~~d~~~~~i~~~d~~~~~~-~~~~--~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~  101 (297)
T 3g4e_A           27 LLFVDIPAKKVCRWDSFTKQV-QRVT--MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFN  101 (297)
T ss_dssp             EEEEETTTTEEEEEETTTCCE-EEEE--CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEE
T ss_pred             EEEEECCCCEEEEEECCCCcE-EEEe--CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCC
Confidence            455666678888999876654 2222  34568899999999965543  56888999876643211111    123456


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      .+++.|
T Consensus       102 di~~d~  107 (297)
T 3g4e_A          102 DGKVDP  107 (297)
T ss_dssp             EEEECT
T ss_pred             CEEECC
Confidence            666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.17  E-value=0.0059  Score=32.55  Aligned_cols=68  Identities=10%  Similarity=0.082  Sum_probs=43.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+..++.++.+..+|..+++..-...............  .+..++.++.++.+..+|..+++.+..+.
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            456666777788888888777655544211111111111  24567788889999999999888765544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.15  E-value=0.0063  Score=31.06  Aligned_cols=81  Identities=5%  Similarity=-0.130  Sum_probs=48.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc-ccccccccceeEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD-KEYSGHQKAITSL   80 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~v~~~   80 (85)
                      +.+++...++.|.+||.. ++............+..+.+.+++...++...++.|..+|.. ++.. .........+..+
T Consensus        32 ~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i  109 (300)
T 2qc5_A           32 KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGI  109 (300)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred             CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccc
Confidence            344444456788888877 443321111123468889999999888777777889999876 4432 1122123445566


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ++.+
T Consensus       110 ~~~~  113 (300)
T 2qc5_A          110 TEGL  113 (300)
T ss_dssp             EECS
T ss_pred             eECC
Confidence            5543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.13  E-value=0.0013  Score=38.15  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      +.|..||+.+++..-+....  .+.....+...+..++.++.++.++.||..+++.+..+..
T Consensus       457 g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeCCCCcEEeecCCC--CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence            78999999999887776542  2233344555777888889999999999999998877763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.12  E-value=0.013  Score=34.27  Aligned_cols=82  Identities=7%  Similarity=-0.020  Sum_probs=46.9

Q ss_pred             ceeEEeeC----CCcEEEeeCCCce-eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC-Cccccccccc-cc
Q psy7058           2 GLLATTSA----DQTARIWNTEDFS-LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE-TGEVDKEYSG-HQ   74 (85)
Q Consensus         2 ~~l~~~~~----~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~-~~   74 (85)
                      +.++..++    +..|.+||+.++. ....+.......+..+.+. ++.++++...++..++|.+. .+.....+.. ..
T Consensus       328 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~  406 (741)
T 1yr2_A          328 DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGI  406 (741)
T ss_dssp             TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSS
T ss_pred             CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCC
Confidence            44554444    3459999987742 3333333244456677776 56677788888877777554 3444444432 23


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+..+.++|
T Consensus       407 ~~v~~~~~s~  416 (741)
T 1yr2_A          407 GSASGLSGRP  416 (741)
T ss_dssp             CEEEEEECCB
T ss_pred             eEEEEeecCC
Confidence            4556666554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.09  E-value=0.0084  Score=31.32  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=44.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .++.+.+.++.|+++|+.+++...++ ......-..+.+.. .......-.++.+.++|..+.+.+.++.
T Consensus        66 ~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           66 HFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            35677888888999999999888777 32221123344432 2333344467888899988887776665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.08  E-value=0.0077  Score=30.72  Aligned_cols=80  Identities=6%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc-ccccccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD-KEYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~v~~   79 (85)
                      +.+++...++.|..+|.. ++.. .+.. .....+..+.+.+++...++...++.|..++.. ++.. ..+......+..
T Consensus        74 ~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           74 DIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             CEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence            334444456778888877 4442 2221 123457899999999888877767889888876 4332 112222334555


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.+.+
T Consensus       151 i~~d~  155 (300)
T 2qc5_A          151 ITLGS  155 (300)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            55543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.06  E-value=0.011  Score=33.22  Aligned_cols=62  Identities=8%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             CcEEEeeCCCceeeeeeeccCC--CcEEEEEecCCCCEEEEEc-------------------CCCeEEEEEcCCcccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQ--RWVWDAAFTLDSKFLLTAS-------------------SDGVARLWNIETGEVDKE   69 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~~~~   69 (85)
                      +.+.+.|..+.+...++.....  ..-..+-|+|+++.+++..                   ....|.+||+.+++...+
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            6799999999998888764211  1123577899999888774                   367999999988776666


Q ss_pred             ccc
Q psy7058          70 YSG   72 (85)
Q Consensus        70 ~~~   72 (85)
                      +..
T Consensus       244 I~v  246 (462)
T 2ece_A          244 LTL  246 (462)
T ss_dssp             EES
T ss_pred             Eec
Confidence            653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.04  E-value=0.0094  Score=31.14  Aligned_cols=82  Identities=11%  Similarity=0.106  Sum_probs=56.3

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccC-C---CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc----
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTAN-Q---RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH----   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----   73 (85)
                      +.|+.+..++.|.++|..+.+....+.... .   ..++-+.|. +|...+..-.+..|.+.|..+++.+..+...    
T Consensus       146 ~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~  224 (268)
T 3nok_A          146 GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTR  224 (268)
T ss_dssp             TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHH
T ss_pred             CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcc
Confidence            456666668889999999888877765421 1   235667776 7766666656789999999998876654421    


Q ss_pred             ---------ccceeEEEEeC
Q psy7058          74 ---------QKAITSLAFCD   84 (85)
Q Consensus        74 ---------~~~v~~~~~~~   84 (85)
                               .+-.+.++|+|
T Consensus       225 ~~~~~~~~~~~vlNGIA~dp  244 (268)
T 3nok_A          225 AVAGQVTNPEAVLNGIAVEP  244 (268)
T ss_dssp             HHTTTCCCTTCCEEEEEECT
T ss_pred             cccccccCcCCceEEEEEcC
Confidence                     13457788876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.04  E-value=0.0088  Score=30.78  Aligned_cols=82  Identities=10%  Similarity=0.098  Sum_probs=55.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCC----CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccc----
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQ----RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGH----   73 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----   73 (85)
                      +.|+.+..++.|.++|..+.+...++.....    ..++-+.+. +|...+..-.+..|.+.|..+++.+..+...    
T Consensus       115 ~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~  193 (243)
T 3mbr_X          115 SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVP  193 (243)
T ss_dssp             SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGST
T ss_pred             CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcc
Confidence            4455566678899999998888777654211    235666665 6766666656779999999998876554411    


Q ss_pred             ---------ccceeEEEEeC
Q psy7058          74 ---------QKAITSLAFCD   84 (85)
Q Consensus        74 ---------~~~v~~~~~~~   84 (85)
                               .+-.+.++|+|
T Consensus       194 ~~~~~~~~~~~vlNGIA~d~  213 (243)
T 3mbr_X          194 DADALTDSTNDVLNGIAFDA  213 (243)
T ss_dssp             TTTSCCCTTSSCEEEEEEET
T ss_pred             ccccccCCcCCceEEEEEcC
Confidence                     12447788876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.00  E-value=0.011  Score=31.46  Aligned_cols=69  Identities=12%  Similarity=0.111  Sum_probs=45.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccC--------CCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTAN--------QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+..++.++.+..+|..+++..-+.....        ...+... ...++..++.++.++.+..+|..+++.+....
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            467778888999999999888765554311        1222221 11245566677788999999998887665443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.99  E-value=0.011  Score=30.85  Aligned_cols=65  Identities=11%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +++.-.++.+.++|..+.+...++... ...  ...+++++..++.+..++.+.++|..+.+....+.
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            345556789999999999988887653 111  13345577777666678899999998877666555

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=96.97  E-value=0.012  Score=31.03  Aligned_cols=77  Identities=10%  Similarity=-0.144  Sum_probs=48.1

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc----cccccee
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS----GHQKAIT   78 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~v~   78 (85)
                      ++++...++.|..||..+++.. .+.  ....+.++.+++++.++++. . ..|.+||..+++......    .....++
T Consensus        63 l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~  137 (326)
T 2ghs_A           63 AWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSN  137 (326)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred             EEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCC
Confidence            4556666788999998776543 222  23468899999999877764 3 358889987665321111    0123466


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      .+.++|
T Consensus       138 ~i~~d~  143 (326)
T 2ghs_A          138 DGRMHP  143 (326)
T ss_dssp             EEEECT
T ss_pred             CEEECC
Confidence            676665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.96  E-value=0.012  Score=31.15  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             CCcEEEeeCCCceeeeeeecc-----CCCcEEEEEecCCC-CEEEEEc---CCCeEEEEEcCCccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTA-----NQRWVWDAAFTLDS-KFLLTAS---SDGVARLWNIETGEVDK   68 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~---~~~~i~~~~~~~~~~~~   68 (85)
                      +..|.+||..+++....+...     .....+.+.+++++ ...++-.   .++.|.+||..+++...
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            468999999888866655431     12346889999754 4445544   57899999987665443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.81  E-value=0.014  Score=30.27  Aligned_cols=66  Identities=18%  Similarity=0.122  Sum_probs=41.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+..++.++.+..+|.. ++....... ....+..+...+++. +..++.++.+..+|.. ++....+.
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~  173 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFKT-KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK  173 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEcC-CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence            456677778889999987 665555443 223344555565666 4456677888888887 65544433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.79  E-value=0.016  Score=30.08  Aligned_cols=57  Identities=9%  Similarity=0.079  Sum_probs=40.4

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      ++++...++.|..|+. +++. ..+.. ....+..+.++++|.++++...++.|..|+..
T Consensus        59 l~~~d~~~~~i~~~~~-~g~~-~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           59 LVWSDLVGRRVLGWRE-DGTV-DVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EEEEETTTTEEEEEET-TSCE-EEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EEEEECCCCEEEEEeC-CCCE-EEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            4566777788999987 4442 33332 34558899999999977766666789989875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.74  E-value=0.018  Score=29.68  Aligned_cols=64  Identities=11%  Similarity=0.164  Sum_probs=46.3

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +...-.++.+.++|..+.+...++.....+  +.++  +++..+.....++.|.++|..+.+.+..+.
T Consensus        78 y~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~  141 (243)
T 3mbr_X           78 IQLTWRNHEGFVYDLATLTPRARFRYPGEG--WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK  141 (243)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEEEECSSCC--CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             EEEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence            344557889999999999999888763322  3444  466666666678899999998877666555

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.64  E-value=0.023  Score=29.66  Aligned_cols=67  Identities=10%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             eeEEeeCCC--cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEEcCCcccccccc
Q psy7058           3 LLATTSADQ--TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         3 ~l~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ++.+.+.++  .|+.+|+.+++...++.......-..+..  ++..+. ..-.++.+.++|..+.+.+.++.
T Consensus        55 LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~  124 (262)
T 3nol_A           55 FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFN  124 (262)
T ss_dssp             EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence            455666655  89999999999888776522211223333  343433 33457788888988877766665

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.59  E-value=0.0054  Score=35.66  Aligned_cols=62  Identities=6%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      .++.|..||..+++..-+.....  +.....+...+..++.++.++.++.||.++++.+..+..
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            34789999999998876665422  122223344677888889999999999999988876653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.55  E-value=0.045  Score=31.95  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=33.7

Q ss_pred             cEEEeeCCCceee--eeeecc--CCCcEEEEEecCCCCEEEEEc----CCCeEEEEEcCCc
Q psy7058          12 TARIWNTEDFSLV--RELGTA--NQRWVWDAAFTLDSKFLLTAS----SDGVARLWNIETG   64 (85)
Q Consensus        12 ~i~~~d~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~   64 (85)
                      .|++|++.+....  ......  +......+.++|||++++...    ....++++++..+
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence            4889998765432  222211  123467889999999875433    2358999998765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.54  E-value=0.0086  Score=34.99  Aligned_cols=48  Identities=15%  Similarity=0.107  Sum_probs=34.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   48 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (85)
                      |.+++.++.|+.++.||..+++.+.++..........+.+..+|+..+
T Consensus       486 gglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          486 GNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            467888999999999999999998887753332223455566776543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.53  E-value=0.017  Score=30.01  Aligned_cols=61  Identities=15%  Similarity=0.037  Sum_probs=37.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      .+..++.++.+..+|.. ++....... ....+..+...+++...+..   +.+..+| .+++....
T Consensus       149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~  209 (330)
T 3hxj_A          149 TIYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWN  209 (330)
T ss_dssp             CEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEE
T ss_pred             EEEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEE
Confidence            45667777889999987 666555443 23334555566666654433   6777777 55544433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.48  E-value=0.022  Score=33.26  Aligned_cols=48  Identities=10%  Similarity=0.065  Sum_probs=34.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL   48 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (85)
                      +++++.++.|+.+++||..+++.+.++..........+.+..+|+.++
T Consensus       488 g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          488 GNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            356788899999999999999999888754433333455556776544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.37  E-value=0.045  Score=29.98  Aligned_cols=61  Identities=8%  Similarity=-0.027  Sum_probs=39.8

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccC--------------CCcEEEEEecCCCCEEEEEc-CCCeEEEEEcCCcc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTAN--------------QRWVWDAAFTLDSKFLLTAS-SDGVARLWNIETGE   65 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~   65 (85)
                      ++++...++.|+.|+.... . ..+....              -.....++++++|.++++-. .++.|+.|+..++.
T Consensus       281 lyv~d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEEeCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            4455556677888876532 1 1111100              12368899999999777777 78899999976664

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=96.35  E-value=0.037  Score=28.77  Aligned_cols=80  Identities=10%  Similarity=0.004  Sum_probs=42.2

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec---cCCCcEEEEEecCCCCEEEE----EcC-------------CCeEEEEEc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT---ANQRWVWDAAFTLDSKFLLT----ASS-------------DGVARLWNI   61 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~i~~~~~   61 (85)
                      +++++...++.|..|+.. ++.......   .....++.+.+.++|.+.++    +..             .+.|..++.
T Consensus        98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A           98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence            333443344678888865 443221111   01123567999999998876    321             245777776


Q ss_pred             CCccccccccccccceeEEEEeC
Q psy7058          62 ETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        62 ~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .+++.....  .....+.++|+|
T Consensus       177 ~~g~~~~~~--~~~~p~gl~~sp  197 (305)
T 3dr2_A          177 DGSPLQRMA--DLDHPNGLAFSP  197 (305)
T ss_dssp             SSCCCEEEE--EESSEEEEEECT
T ss_pred             CCCcEEEEe--cCCCCcceEEcC
Confidence            555432221  223445566665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.25  E-value=0.0084  Score=34.40  Aligned_cols=61  Identities=13%  Similarity=0.249  Sum_probs=42.9

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      ++.|..||+.+++..-+......  ...-.+...+..++.++.|+.++.+|.++++.+..++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~--~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLP--LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC--CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCCC--CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            57899999999988766554211  11111122466777789999999999999998877763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.21  E-value=0.011  Score=33.85  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=42.8

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .++.+..||..+++..-+......  +....+...+..++.++.++.++.+|.++++.+..+.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCCC--ccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            457899999999988766654221  1111122245667778899999999999999887765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.09  E-value=0.078  Score=29.97  Aligned_cols=68  Identities=10%  Similarity=0.098  Sum_probs=44.7

Q ss_pred             eeEEeeCCCcEEEeeCCCc----eeeeeeec-----c-CCCcEEEEEecCCCCEEEEEcCC------CeEEEEEcCCccc
Q psy7058           3 LLATTSADQTARIWNTEDF----SLVRELGT-----A-NQRWVWDAAFTLDSKFLLTASSD------GVARLWNIETGEV   66 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~----~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~   66 (85)
                      +++++..+..|+++|+.+.    +....+..     . ....-..+...|+| ..++...+      +.+.++|..+.+.
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v  176 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP  176 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence            3567778889999998644    44444420     0 11134567778999 55554333      6899999998887


Q ss_pred             ccccc
Q psy7058          67 DKEYS   71 (85)
Q Consensus        67 ~~~~~   71 (85)
                      +..+.
T Consensus       177 ~~~~~  181 (462)
T 2ece_A          177 LGKWE  181 (462)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            77665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.93  E-value=0.035  Score=32.83  Aligned_cols=51  Identities=10%  Similarity=-0.035  Sum_probs=31.5

Q ss_pred             cEEEeeCCCc-eeeeeeeccCCCcEEEEEecCCCCEEEEEcCC-----CeEEEEEcCCcc
Q psy7058          12 TARIWNTEDF-SLVRELGTANQRWVWDAAFTLDSKFLLTASSD-----GVARLWNIETGE   65 (85)
Q Consensus        12 ~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~   65 (85)
                      .|+++|+.++ +.+....   ......+.|+||++.++....+     ..|+.+++.++.
T Consensus       202 ~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          202 TIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ  258 (751)
T ss_dssp             EEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred             EEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence            4899999887 5321100   1112357899999877765543     257777776554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=95.74  E-value=0.08  Score=28.09  Aligned_cols=55  Identities=9%  Similarity=0.071  Sum_probs=35.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCe
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGV   55 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (85)
                      |+.+++...++.|.+||..+++...............+++.+++.++++....+.
T Consensus       259 G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          259 HNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             CCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             CCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccc
Confidence            3456666677889999984565433322212345788999988887777654433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.65  E-value=0.069  Score=30.68  Aligned_cols=68  Identities=13%  Similarity=0.174  Sum_probs=42.9

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCC---CcEEE-EEecCCCCEEEEEcC------CCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQ---RWVWD-AAFTLDSKFLLTASS------DGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~   71 (85)
                      ..++.++.++.+..+|..+++..-+......   ..+.. ..+. ++ .++.+..      ++.|..+|..+++.+..+.
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            4577788899999999999988766543110   01110 0011 34 4444443      7899999999988766544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.56  E-value=0.061  Score=31.46  Aligned_cols=70  Identities=7%  Similarity=0.062  Sum_probs=43.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecC--CCCEEEEEcC------CCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTL--DSKFLLTASS------DGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~   71 (85)
                      ..++.++.|+.+..+|..+++..-+...........+.-+|  .+..++.+..      ++.|..+|..+++.+..+.
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            45778888999999999999887666542110000000111  1234444432      5889999999988776554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.54  E-value=0.034  Score=32.23  Aligned_cols=61  Identities=13%  Similarity=0.204  Sum_probs=42.5

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ..+.+..||+.+++..-+......  ...-.+...+..++.++.|+.++.+|.++++.+.+++
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~--~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFA--VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CcCeEEEEECCCCCEEeEecCCCC--ccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            357899999999988766643211  1111112246677778999999999999999887765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=95.37  E-value=0.048  Score=33.29  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=29.8

Q ss_pred             cEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058          34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      .+.++...++..++++.+.|+++|+|++.+++++.+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence            456677777888999999999999999998876554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.33  E-value=0.068  Score=30.83  Aligned_cols=47  Identities=11%  Similarity=0.034  Sum_probs=32.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL   47 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (85)
                      |.+++.++.|+.++.+|..+++.+-++.........-+.+..+|+..
T Consensus       497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            35778899999999999999999888775332212224444567643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.19  E-value=0.14  Score=26.59  Aligned_cols=61  Identities=13%  Similarity=0.139  Sum_probs=44.4

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      ++++...++.|...|.. ++....+..........+++.+++.++++.-.++.+.++++...
T Consensus        41 L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           41 LFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             EEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            44557778888888987 77777765423345788888888887777667788888887543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.43  E-value=0.16  Score=29.53  Aligned_cols=46  Identities=9%  Similarity=0.058  Sum_probs=31.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   46 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (85)
                      |.+++.++.|+.++.+|..+++.+-+..........-+.+..+|+.
T Consensus       484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            3567789999999999999999988776532222223444456654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.36  E-value=0.32  Score=26.96  Aligned_cols=59  Identities=3%  Similarity=0.041  Sum_probs=35.5

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEEcC
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNIE   62 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~   62 (85)
                      +++-..++.|..++..++................++++|++..++ +-...+.|..++..
T Consensus       241 yv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          241 YFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            334445566777777655432222221223457899999999544 44567789888764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.01  E-value=0.048  Score=33.88  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=26.5

Q ss_pred             EEEecCCCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058          37 DAAFTLDSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      ++...++..++++.+.|+++++|++.+++++.+
T Consensus       242 s~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t  274 (1139)
T 4fhn_B          242 SMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET  274 (1139)
T ss_dssp             CCEEETTTTEEEEEBTTCEEEEEETTTTEEEEE
T ss_pred             EeeccCCccEEEEEeCCCEEEEEECCCCCeEEe
Confidence            344456778999999999999999998876654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=93.92  E-value=0.33  Score=25.35  Aligned_cols=77  Identities=9%  Similarity=-0.057  Sum_probs=43.3

Q ss_pred             eEEeeCCCcEEEeeCCC-cee--eeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc--ccccccccccee
Q psy7058           4 LATTSADQTARIWNTED-FSL--VRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV--DKEYSGHQKAIT   78 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~v~   78 (85)
                      +++-...+.|..++... ++.  ...+..  ......+++.++|.+.++....+.|..++.. ++.  +..+........
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~  258 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGST  258 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence            34444566788888753 221  111111  1123457888899877666667889999864 443  222332234566


Q ss_pred             EEEEe
Q psy7058          79 SLAFC   83 (85)
Q Consensus        79 ~~~~~   83 (85)
                      +++|.
T Consensus       259 ~~a~~  263 (306)
T 2p4o_A          259 AVAFG  263 (306)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77775

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=93.64  E-value=0.34  Score=24.63  Aligned_cols=58  Identities=7%  Similarity=-0.121  Sum_probs=33.8

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCC
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL-LTASSDGVARLWNIET   63 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~   63 (85)
                      ++-..++.|..++............ .......+.+++++..+ ++-...+.|.+++...
T Consensus        52 ~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           52 WTDISEPSIGRASLHGGEPTTIIRQ-DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEETTTTEEEEEESSSCCCEEEECT-TCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEECCCCEEEEEecCCCCcEEEEEC-CCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            3344456677777654433222222 22346889999865544 4445567899888753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.51  E-value=0.62  Score=27.24  Aligned_cols=63  Identities=8%  Similarity=0.085  Sum_probs=36.8

Q ss_pred             ceeEEeeC-CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc-CC-----CeEEEEEcCCc
Q psy7058           2 GLLATTSA-DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS-SD-----GVARLWNIETG   64 (85)
Q Consensus         2 ~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~i~~~~~~~~   64 (85)
                      ..++.|+. +..+.+||..+.+-...-.......-..+...++++.++.|+ .+     ..+.+||..+.
T Consensus       255 ~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          255 QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             CEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            45667773 457888997765332211111111123444556889888887 33     46889998654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=93.34  E-value=0.13  Score=30.76  Aligned_cols=34  Identities=12%  Similarity=0.447  Sum_probs=26.6

Q ss_pred             EEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058          35 VWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      |.++.+  +..++++.+.|+++|+|++.+++++.+.
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~  257 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY  257 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence            444443  5779999999999999999998766543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=93.32  E-value=0.67  Score=27.09  Aligned_cols=53  Identities=8%  Similarity=0.130  Sum_probs=32.6

Q ss_pred             cEEEeeCCCceee--eeeeccCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCc
Q psy7058          12 TARIWNTEDFSLV--RELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETG   64 (85)
Q Consensus        12 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~   64 (85)
                      .+.+||..+.+-.  ..+..........+.+..++.+++.|+. +..+.+||..+.
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC
Confidence            4778888765422  2222212222334666788999988874 458999998654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.13  E-value=0.28  Score=27.76  Aligned_cols=32  Identities=9%  Similarity=0.205  Sum_probs=27.5

Q ss_pred             CCcEEEEEecCC---CCEEEEEcCCCeEEEEEcCC
Q psy7058          32 QRWVWDAAFTLD---SKFLLTASSDGVARLWNIET   63 (85)
Q Consensus        32 ~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~   63 (85)
                      ..+|..+.|+|-   +..+++...|+.|++||+..
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence            457999999994   56899999999999999975

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=93.10  E-value=0.43  Score=24.24  Aligned_cols=77  Identities=6%  Similarity=0.050  Sum_probs=43.4

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc-cceeEEEEe
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ-KAITSLAFC   83 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~   83 (85)
                      ++-...+.|.++|............ . .....++.. .+..+++...++.|..++..+++.+..+.... .....+++.
T Consensus       183 v~d~~~~~I~~~~~~g~~~~~~~~~-~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~  259 (267)
T 1npe_A          183 WVDAGTHRAECLNPAQPGRRKVLEG-L-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (267)
T ss_dssp             EEETTTTEEEEEETTEEEEEEEEEC-C-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             EEECCCCEEEEEecCCCceEEEecC-C-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeec
Confidence            4444556788888764433222222 1 223455553 34444444456899999998888777665332 235566665


Q ss_pred             C
Q psy7058          84 D   84 (85)
Q Consensus        84 ~   84 (85)
                      |
T Consensus       260 ~  260 (267)
T 1npe_A          260 L  260 (267)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=92.50  E-value=1  Score=26.95  Aligned_cols=53  Identities=11%  Similarity=-0.015  Sum_probs=33.2

Q ss_pred             cEEEeeCCCceee--eeeeccCCCcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCc
Q psy7058          12 TARIWNTEDFSLV--RELGTANQRWVWDAAFTLDSKFLLTASS---DGVARLWNIETG   64 (85)
Q Consensus        12 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~   64 (85)
                      .|+.+++.++...  ..+..........+.|+|||++++....   ...++++|+..+
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            5777887765422  2222212334567899999998776542   346888888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=92.49  E-value=0.96  Score=26.67  Aligned_cols=61  Identities=20%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             Ccee-EEeeCCCcEEEeeCCCce------------eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           1 MGLL-ATTSADQTARIWNTEDFS------------LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         1 g~~l-~~~~~~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      |+++ +++..+..+.++|+.+.+            ....+.  -...-..+.|+++|....+.-.++.|..|++..
T Consensus       288 Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          288 KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            3444 455577889999998653            223332  233478899999994445666789999999876

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=92.47  E-value=0.78  Score=25.57  Aligned_cols=59  Identities=5%  Similarity=-0.035  Sum_probs=34.7

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeee-eccCCCcEEEEEecCCCCEEE-EEcCCCeEEEEEcC
Q psy7058           4 LATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNIE   62 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~   62 (85)
                      +++-..++.|+.+|..++.....+ ..........++++|++..+. +-...+.|+.++..
T Consensus       243 yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          243 YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            334445566777777655542222 111122234699999998554 44556789988764

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=92.27  E-value=0.34  Score=29.13  Aligned_cols=28  Identities=18%  Similarity=0.501  Sum_probs=23.7

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT   29 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~   29 (85)
                      .++++-+.|+++++|++.+++.+....-
T Consensus       232 ~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          232 RYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4788999999999999999987766543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.21  E-value=0.77  Score=24.97  Aligned_cols=64  Identities=13%  Similarity=0.147  Sum_probs=39.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEe--cC-CCCEEEEE-cCCCeEEEEEcCCcc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAF--TL-DSKFLLTA-SSDGVARLWNIETGE   65 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~-~~~~~i~~~~~~~~~   65 (85)
                      +.++.++.|+.|+-+|..+|+..-++......++....-  .+ ++..++.. ..||.+..++..++.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~   78 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL   78 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc
Confidence            468899999999999999998887776531111221110  01 22223232 478888888876664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=91.65  E-value=1.3  Score=26.22  Aligned_cols=70  Identities=11%  Similarity=0.008  Sum_probs=47.3

Q ss_pred             ceeEEee-CCCcEEEeeCCCceeeeeeeccCCCcEEEEEe-c-CCCCEEEEEc------------------CCCeEEEEE
Q psy7058           2 GLLATTS-ADQTARIWNTEDFSLVRELGTANQRWVWDAAF-T-LDSKFLLTAS------------------SDGVARLWN   60 (85)
Q Consensus         2 ~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~------------------~~~~i~~~~   60 (85)
                      +++.... .+..|.+.|+.+.+....+..........+.+ + |++.+++.++                  .++.+.+.|
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID  181 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD  181 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence            4454444 45679999999998877443323334677777 4 8898887774                  235788888


Q ss_pred             cCCcccccccc
Q psy7058          61 IETGEVDKEYS   71 (85)
Q Consensus        61 ~~~~~~~~~~~   71 (85)
                      ..+.+...++.
T Consensus       182 ~~t~~v~~qI~  192 (595)
T 1fwx_A          182 ADKWEVAWQVL  192 (595)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCeEEEEEE
Confidence            88777666554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.50  E-value=1.8  Score=27.63  Aligned_cols=64  Identities=14%  Similarity=-0.062  Sum_probs=39.4

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCC------CCEEEEEcC-CCeEEEEEcCCcccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD------SKFLLTASS-DGVARLWNIETGEVD   67 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~i~~~~~~~~~~~   67 (85)
                      +++.+. ++.+.++.+..++............+.++.+.+.      +.+++.|.. |++++|++++..+.+
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~  595 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL  595 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence            344443 4566666655443222111123456899998763      468888886 999999999865443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.16  E-value=0.43  Score=29.92  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeee
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELG   28 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~   28 (85)
                      .++++-+.|+++++|++.+++++....
T Consensus       250 ~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          250 NVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             TEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            467899999999999999998877653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.08  E-value=0.47  Score=29.28  Aligned_cols=27  Identities=15%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeee
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELG   28 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~   28 (85)
                      .++++-+.|+++++|++.+++++....
T Consensus       248 ~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          248 NVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEECCCEEEEEECCCCCeEeeec
Confidence            367899999999999999998877653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=88.91  E-value=0.58  Score=25.43  Aligned_cols=64  Identities=13%  Similarity=0.072  Sum_probs=40.1

Q ss_pred             eCCCcEEEeeCCCceeeeeeecc---CCCcEEEE---Ee-----cCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           8 SADQTARIWNTEDFSLVRELGTA---NQRWVWDA---AF-----TLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         8 ~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~---~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ..||.++.++..++.....+...   ...++..-   .+     ...+..+++++.++.+.-.|+.+|+.+..+.
T Consensus        64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            57999999998887544333221   11122210   00     0134567788899999999999998777665

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=88.83  E-value=1.2  Score=26.56  Aligned_cols=54  Identities=7%  Similarity=-0.079  Sum_probs=25.7

Q ss_pred             eCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC--CCeEEEEEcC
Q psy7058           8 SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS--DGVARLWNIE   62 (85)
Q Consensus         8 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~   62 (85)
                      ...+.|.+.+.........+.. .......+++.|.+..++....  .+.|..+++.
T Consensus       472 ~~~~~I~v~d~dg~~~~~l~~~-~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d  527 (699)
T 1n7d_A          472 SVLGTVSVADTKGVKRKTLFRE-QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  527 (699)
T ss_dssp             TTTSCEEEEBSSSCCEEEECCC-SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred             ccCCeEEEEecCCCceEEEEeC-CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence            3445666666553322222221 1123456778875444443332  2566666553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=87.72  E-value=2.2  Score=23.32  Aligned_cols=29  Identities=10%  Similarity=0.131  Sum_probs=24.8

Q ss_pred             EEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058          35 VWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      .+.+.++|++..++.....+.+.-+|+..
T Consensus       187 ~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          187 YSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             cceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            66899999999888877799999999874

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=86.85  E-value=2.1  Score=22.26  Aligned_cols=59  Identities=8%  Similarity=0.021  Sum_probs=39.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccC--------CCcEEEEEecCCCCEEEEEcCCCeEEEEEc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTAN--------QRWVWDAAFTLDSKFLLTASSDGVARLWNI   61 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (85)
                      |.+++.+..+..+..+|.. ++....+.-..        -.....|++.++|...++ ++...++.|.-
T Consensus       185 g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            3567778888889999966 55544443211        135689999999985555 66667766643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=86.60  E-value=2.2  Score=22.23  Aligned_cols=61  Identities=11%  Similarity=-0.028  Sum_probs=34.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC--CeEEEEEcCCcc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD--GVARLWNIETGE   65 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~   65 (85)
                      +++++...++.|..+|... +......  .......+.+.+++.++++....  ..+..++..+++
T Consensus        44 ~lyv~d~~~~~I~~~d~~g-~~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           44 TIFVTNHEVGEIVSITPDG-NQQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CEEEEETTTTEEEEECTTC-CEEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CEEEEeCCCCeEEEECCCC-ceEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence            3344444566777777654 2222222  23457889999999865554332  246666665554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=86.10  E-value=2.7  Score=22.64  Aligned_cols=57  Identities=11%  Similarity=-0.090  Sum_probs=29.7

Q ss_pred             EEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEE-EEcCC-CeEEEEEcC
Q psy7058           5 ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSD-GVARLWNIE   62 (85)
Q Consensus         5 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~i~~~~~~   62 (85)
                      ++-...+.|.+.+............ .......+++.|.+..++ +-... +.|..+++.
T Consensus       132 ~~d~~~~~I~~~~~dG~~~~~l~~~-~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d  190 (349)
T 3v64_C          132 WTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  190 (349)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECT-TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EEcCCCCeEEEEcCCCCceEEEEeC-CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence            3333445566666543222222212 223467889998554444 43344 678877765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.92  E-value=2.9  Score=22.87  Aligned_cols=52  Identities=13%  Similarity=0.184  Sum_probs=34.8

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc--ccc----ccccccceeEEEEeC
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV--DKE----YSGHQKAITSLAFCD   84 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~----~~~~~~~v~~~~~~~   84 (85)
                      ..-+.+.+.|+|.++++--..+.|++++...++.  +..    +.........++++|
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~P   89 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSP   89 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECT
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecc
Confidence            3468899999999887776588999887654432  111    122345667788776

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=85.51  E-value=2.7  Score=22.05  Aligned_cols=51  Identities=16%  Similarity=0.018  Sum_probs=30.1

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEE-cCCCeEEEEEcCC
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA-SSDGVARLWNIET   63 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~   63 (85)
                      +.+..+|..+++.......  ....+.+++++++..+..+ ..++.|..|++..
T Consensus       165 g~v~~~d~~~~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             ceEEEEeCCCCEEEEeccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            4455566544433221111  1224578999999865544 5568899999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=84.19  E-value=3.4  Score=22.24  Aligned_cols=29  Identities=17%  Similarity=0.066  Sum_probs=18.5

Q ss_pred             EEEEEecCCC-CEEEEEcCCCeEEEEEcCC
Q psy7058          35 VWDAAFTLDS-KFLLTASSDGVARLWNIET   63 (85)
Q Consensus        35 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~   63 (85)
                      ...+++.+.+ .+..+-...+.|.+.+...
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence            3567777644 4445555567888888753

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=83.56  E-value=4.7  Score=23.38  Aligned_cols=61  Identities=7%  Similarity=-0.025  Sum_probs=44.2

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      +..-..-|.+++||+.++.++..-+. ...++...+......-++.....|.|.-..+.+.+
T Consensus       273 iyviTK~G~i~lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          273 VFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             EEEEecCceEEEEecccceeeeeecc-cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            44556778999999999999888776 45556666555556666666788887777776544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=82.82  E-value=4.2  Score=22.24  Aligned_cols=56  Identities=9%  Similarity=-0.078  Sum_probs=28.4

Q ss_pred             EeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc-CC-CeEEEEEcC
Q psy7058           6 TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS-SD-GVARLWNIE   62 (85)
Q Consensus         6 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~   62 (85)
                      +-...+.|.+.+.........+.. .......+++.|.+..++... .. +.|..+++.
T Consensus       176 ~d~~~~~I~~~~~dg~~~~~l~~~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          176 TDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             EETTTTEEEECBTTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EcCCCCeEEEEeCCCCceEEeecC-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            333344555555443222222221 223467888888655544433 33 677777764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=82.67  E-value=5.2  Score=23.16  Aligned_cols=59  Identities=7%  Similarity=0.040  Sum_probs=34.8

Q ss_pred             eeEEeeCCCcEEEeeCC-------Ccee-----------eee-eeccCCCcEEEEEecCCCCEEEE-EcCCCeEEEEEc
Q psy7058           3 LLATTSADQTARIWNTE-------DFSL-----------VRE-LGTANQRWVWDAAFTLDSKFLLT-ASSDGVARLWNI   61 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~-------~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~   61 (85)
                      ++++-..++.|+.+|..       ++..           ... ...........++++|++..++. -...+.|+.++.
T Consensus       261 LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          261 LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            34455566678888876       3432           111 11112234578999999996444 456678888664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=80.92  E-value=4.1  Score=22.36  Aligned_cols=30  Identities=10%  Similarity=0.185  Sum_probs=23.6

Q ss_pred             cEEEEEecCCCCEEEEEc-CCCeEEEEEcCC
Q psy7058          34 WVWDAAFTLDSKFLLTAS-SDGVARLWNIET   63 (85)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~   63 (85)
                      ..+.++|+||++.++.+. ..+.|..|++..
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            468899999998776554 567899999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	85
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 4e-14
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
            L + S D+T ++W+      +  L   +  WV    F    KF+L+ + D   R+W+ +
Sbjct: 219 FLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277

Query: 63  TGEVDKEYSGHQKAITSLAFC 83
                K  + H+  +TSL F 
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFH 298

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (120), Expect = 1e-09
 Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLW 59
            + + + D+T R+W+ ++   ++ L  A++ +V    F   + +++T S D   ++W
Sbjct: 261 FILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 2e-09
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
          +  V    F      +++AS D   ++W+ ETG+ ++   GH  ++  ++F   
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 19/100 (19%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-------------------GTANQRWVWDAAFTLD 43
           L+A+ S DQT R+W         EL                     +             
Sbjct: 157 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 216

Query: 44  SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
             FLL+ S D   ++W++ TG       GH   +  + F 
Sbjct: 217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 3e-06
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           + + S D+T ++W  +    V+   T ++ WV       D   + + S+D   R+W + T
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 174

Query: 64  GEVDKEYSGHQKAITSLAFC 83
            E   E   H+  +  +++ 
Sbjct: 175 KECKAELREHRHVVECISWA 194

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (135), Expect = 9e-12
 Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTAN-----------QRWVWDAAFTLDSKFLLTAS 51
            + + S D++ ++WN ++ +   +  T N           + +V   A T + +++L+ S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327

Query: 52  SDGVARLWNIETGEVDKEYSGHQKAITSLAFCD 84
            D     W+ ++G       GH+ ++ S+A  +
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-08
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAA------FTLDSKFLLTASSDGVA 56
            + + S D+    W+ +  + +  L   ++  V   A         +     T S D  A
Sbjct: 322 YILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

Query: 57  RLWNIE 62
           R+W  +
Sbjct: 381 RIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 2e-05
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 4   LATTSADQTARIWNTEDFSLVREL------GTANQRWVWDAAFTLDSKFLLTASSDGVAR 57
           +A  S D+  R+W++E   LV  L      GT ++  V+   FT D + +++ S D   +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 58  LWNIETGEVDKEYSGHQ 74
           LWN++      +     
Sbjct: 280 LWNLQNANNKSDSKTPN 296

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.0 bits (76), Expect = 0.001
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 4   LATTSADQTARIWNTE-----DFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARL 58
                 +    ++N       D  L + L   +   V    F+ D ++L T   +   ++
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLD--HTSVVCCVKFSNDGEYLATGC-NKTTQV 87

Query: 59  WNIETGEVDKEYSGHQKAITS 79
           + +  G +    S    A   
Sbjct: 88  YRVSDGSLVARLSDDSAANKD 108

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 1e-11
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
              +T  D     W T   + + +   ++   V     ++D K+++T S D  A ++ +
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-07
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 31  NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
           ++  V    F    K+ ++   D +   W    G    +      ++ S   
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDI 314

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-06
 Identities = 9/80 (11%), Positives = 19/80 (23%), Gaps = 8/80 (10%)

Query: 8   SADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD 67
             D             +  L   +   V     +  ++ + T    G  ++W+I      
Sbjct: 29  PPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNK 85

Query: 68  K-----EYSGHQKAITSLAF 82
                 +       I S   
Sbjct: 86  SPVSQLDCLNRDNYIRSCKL 105

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 2e-11
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
            +A+ SAD+T +IWN     + + +    +            + L++ S++G     N E
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (89), Expect = 1e-05
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 31  NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
           +   V+   ++ D   + +AS+D   ++WN+ T +V+K      +         +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 2e-05
 Identities = 5/45 (11%), Positives = 11/45 (24%), Gaps = 1/45 (2%)

Query: 39 AFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
            T     +   +   V     + +    + Y+ H    T     
Sbjct: 24 GNTPAGDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQTTVAKTS 67

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.0 bits (73), Expect = 0.002
 Identities = 5/58 (8%), Positives = 13/58 (22%), Gaps = 1/58 (1%)

Query: 7  TSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG 64
               +         +      T +      A  +    +  +    G  R+W+    
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 3e-11
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 3   LLATTSADQTARI-WNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
             AT S D T R+     D  L+          +   +F+   + LL    D    +W+ 
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

Query: 62  ETGEVDKEYSGHQKAITSLAFCD 84
              +     +GH   ++ L   D
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTD 322

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 1e-10
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
           LL     D    +W+         L   +   V     T D   + T S D   ++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.6 bits (88), Expect = 3e-05
 Identities = 10/52 (19%), Positives = 21/52 (40%)

Query: 32  QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
              ++   +  DS+ L++AS DG   +W+  T             + + A+ 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.5 bits (80), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 34  WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
            V   +   D++  ++ + D  A+LW++  G   + ++GH+  I ++ F 
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 5e-10
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 16 WNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQK 75
          W   +    + L   +   V           +++ S D   ++W+  TG+  +   GH  
Sbjct: 1  WRRGELKSPKVL-KGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 76 AITSLAFCD 84
           + S    D
Sbjct: 59 GVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-08
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           +L + +AD T +IW+ +    ++ L   N+          +  F++T+S DG  +LW+++
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 63  TGEVDKEY-----SGHQKAITSLAFCD 84
           TGE  +        G    +  +   +
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASN 315

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 4   LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET 63
           + + + D   ++W+ E  + +  L     R         D   +++ S D   R+W++ET
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS---LQFDGIHVVSGSLDTSIRVWDVET 206

Query: 64  GEVDKEYSGHQKAITSLAFCD 84
           G      +GHQ   + +   D
Sbjct: 207 GNCIHTLTGHQSLTSGMELKD 227

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 4e-05
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 5   ATTSADQTARIWNTEDFSLVRELGT----ANQRWVWDAAFTLDSKFLLTASSDGVA---- 56
            T+S D T ++W+ +    +R L T     +   VW    +         S +G      
Sbjct: 274 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333

Query: 57  RLWN 60
            + +
Sbjct: 334 LVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 4e-04
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
            + + S D + R+W+ E  + +    T        +   L    L++ ++D   ++W+I
Sbjct: 189 HVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 6e-04
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 3  LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD 43
           + + S D T ++W+      +R L   +   VW +    +
Sbjct: 29 RIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN 68

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 8e-09
 Identities = 7/46 (15%), Positives = 21/46 (45%)

Query: 39 AFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD 84
              +  +++T + D + R+++    +   + SGH   + +L +  
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-06
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 31  NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE-VDKEYSGHQKAITSLAF 82
           +   +        S  +L + S+    ++N+ +G+ V          I S+ F
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 332

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-06
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 2   GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
             +  + ++    I+N     LV      +   +W   F      +     DG + L  +
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 352

Query: 62  E 62
           +
Sbjct: 353 D 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 3  LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           + T + D+  R++++ +   + +L + +   VW   +      L++ S+D   R+W+I+
Sbjct: 25 YVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIK 82

Query: 63 T 63
           
Sbjct: 83 K 83

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 1e-08
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 32 QRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-GHQKAITSLAFCDF 85
           + +   + + D K L +A ++G    W+I TG  ++ +   H   IT +     
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 5   ATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
           AT S D +  +WN    S    +   A+     ++   L+   +++A  D   + WN+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.7 bits (80), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 1/83 (1%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
            L +  A+     W+       R     +   +     T     L T S D   ++    
Sbjct: 26  TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKGDLFTVSWDDHLKVVPAG 84

Query: 63  TGEVDKEYSGHQKAITSLAFCDF 85
              VD   +   K  +       
Sbjct: 85  GSGVDSSKAVANKLSSQPLGLAV 107

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 3e-08
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY---SGHQKAITSLAFCD 84
          ++ D         LL  S DG   ++  +    + +      ++  +    F D
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 5e-07
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 1   MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
              L T  +D     WN +    ++     N+  V           L  A+SD   +   
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--KIACSDNILCLATSDDTFKTN- 319

Query: 61  IETGEVDKEYSGHQKAITSL 80
                +D+    +  +I  +
Sbjct: 320 ---AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 28  GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
            T     V    F+   KFL TA SDG+   WN++T +  K ++   +  + +   
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIA 301

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 5e-04
 Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 3  LLATTSADQTARIWNTEDFSLVREL--GTANQRWVWDAAFTLDSKFLLTASSD 53
          LL  TS D +  ++  +  +   +L      +  +    F  ++   +   + 
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 7e-08
 Identities = 10/85 (11%), Positives = 27/85 (31%), Gaps = 4/85 (4%)

Query: 2   GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL--TASSDGVARLW 59
                 +A +   + + +    + +        +     + D K LL   ++ D    + 
Sbjct: 271 DEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIH 328

Query: 60  NIETGEVDKEYSGHQKAITSLAFCD 84
           + E+GE  +  +        +   D
Sbjct: 329 DAESGEELRSVNQLGHGPQVITTAD 353

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 1e-07
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 3  LLATTSADQTARIWN--TEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWN 60
           +A    +    I+      +  V EL   +   V    +  DS  ++T  +D  A +W 
Sbjct: 21 QIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 4e-07
 Identities = 5/51 (9%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 35 VWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK--EYSGHQKAITSLAFC 83
          +   A+  D   +    ++    ++     +  +  E   H   +T + + 
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.5 bits (72), Expect = 0.003
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)

Query: 2   GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF----LLTASSDGVAR 57
                 + D+ A    +        L + ++  V   +     K       T   DG   
Sbjct: 297 ARERFQNLDKKASSEGSAAAG--AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354

Query: 58  LWNIETGE 65
           +W++ + E
Sbjct: 355 IWDVRSLE 362

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.5 bits (103), Expect = 2e-07
 Identities = 7/66 (10%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
                        ++ +   +           + D   + D K ++    DG    + +E
Sbjct: 290 YYQGAPEKGVLLKYDVKTRKVTEVKN-----NLTDLRLSADRKTVMVRKDDGKIYTFPLE 344

Query: 63  TGEVDK 68
             E ++
Sbjct: 345 KPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 32.9 bits (73), Expect = 0.002
 Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 3  LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDG--VARLWN 60
          L+A  S  Q A I +     +++         +       D+K      +       +++
Sbjct: 17 LIAFVSRGQ-AFIQDVSGTYVLK---VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72

Query: 61 IETGEVDKEYSGHQKAITSLAFC 83
            TG+  +++  +   + ++   
Sbjct: 73 YRTGKA-EKFEENLGNVFAMGVD 94

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 2e-07
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 5   ATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
           AT S D    I++ +    + +   A++  V +  +   S  L+++ +D   + WN+
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 4e-05
 Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 23 LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
          +++ + + + + +           L++ S DG    W+  +         H   I SL  
Sbjct: 5  VLKTI-SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDN 54

Query: 83 CD 84
            
Sbjct: 55 SK 56

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 3e-04
 Identities = 6/55 (10%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 31  NQRWVWDAAFTLDSKFLLTASSDGVARLWNIET-GEVDKEYSGHQKAITSLAFCD 84
                      ++   + T S D    +++++   ++ K  + H+  + +L +  
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-07
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 3   LLATTSADQTARIWNTEDFSLVREL-GTANQRWVWDAAFTLDS-KFLLTASSDGVARLWN 60
             AT  AD T R+W+      V++      Q               +++ S DG    + 
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

Query: 61  I 61
           +
Sbjct: 325 L 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 1e-05
 Identities = 9/53 (16%), Positives = 24/53 (45%)

Query: 31  NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
             +    A   LDS+   T  +D   R+W++ T +  ++++  ++ + +    
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-07
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 29 TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF 85
          +   + V+      D + +++   D   ++W+  T E  +  +GH  ++  L + + 
Sbjct: 12 SETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-05
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
           L+ + S+D T R+W+ E  + +R                 D+K +++ + DG  ++W++ 
Sbjct: 190 LVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 63  TGEVD---------KEYSGHQKAITSLAF 82
                         +    H   +  L F
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQF 275

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 7e-05
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 1   MGLLATTSADQTARIWNTEDFSLVRELG--------TANQRWVWDAAFTLDSKFLLTASS 52
              + + + D   ++W+       R             +   V+   F  D   ++++S 
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH 285

Query: 53  DGVARLWN 60
           D    +W+
Sbjct: 286 DDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (72), Expect = 0.003
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 6   TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE 65
           + S D+T ++WNT     VR L   ++R +    +    + +++ SSD   RLW+IE G 
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 209

Query: 66  VDKEYSGHQ 74
             +   GH+
Sbjct: 210 CLRVLEGHE 218

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 3e-07
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 10  DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE 69
                 ++ E  + ++ +   +    +    + D   +    + G    ++ ET E   +
Sbjct: 259 YNVLESFDLEKNASIKRVPLPH--SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

Query: 70  YSGHQKAITSLA 81
                 A  SLA
Sbjct: 317 VDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 2e-05
 Identities = 7/74 (9%), Positives = 20/74 (27%), Gaps = 2/74 (2%)

Query: 3  LLATTSADQTARIWNTEDFSLVRELGTANQ-RWVWDAAFTLDSKFLL-TASSDGVARLWN 60
           +   +      + +TE  ++ + +  A+              +    T +        +
Sbjct: 3  YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 61 IETGEVDKEYSGHQ 74
          + TGE         
Sbjct: 63 LVTGETLGRIDLST 76

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 4e-07
 Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 2/65 (3%)

Query: 2   GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNI 61
                         ++ +   L++     +    +  AF      L    +     ++N 
Sbjct: 263 DPNQIYGVLNRLAKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 62  ETGEV 66
           +T E 
Sbjct: 321 DTLEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 3e-05
 Identities = 5/74 (6%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 3  LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLL-TASSDGVARLWNI 61
           +  T+      + +    ++ +     ++     A    D++      +  G     ++
Sbjct: 10 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 62 ETGEVDKEYSGHQK 75
          +T +     +    
Sbjct: 70 DTCKNTFHANLSSV 83

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 7e-06
 Identities = 8/92 (8%), Positives = 21/92 (22%), Gaps = 12/92 (13%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQR------------WVWDAAFTLDSKFLLTA 50
              + S D   ++W+ +          +                        +   + T 
Sbjct: 26  FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85

Query: 51  SSDGVARLWNIETGEVDKEYSGHQKAITSLAF 82
           S  G    + I   +  K+    +  +     
Sbjct: 86  SFSGDLLFYRITREDETKKVIFEKLDLLDSDM 117

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 31  NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC 83
           +  WV   +F    + L +A  DG  R W+++T E     + H   I      
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 1e-04
 Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 28 GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD 67
          G A+   ++  +    + F ++ S DG  ++W+ +  + +
Sbjct: 10 GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNE 47

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (89), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 7/85 (8%)

Query: 3   LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE 62
              T        + +   + +   L T     V  +  +   ++L     DG   + ++ 
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLW 91

Query: 63  TGEVD-----KEYSGHQKAITSLAF 82
             E       K  S  +   TS   
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKME 116

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 34.1 bits (76), Expect = 8e-04
 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 3/57 (5%)

Query: 11  QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEV 66
            T  + +T    +   +           A T D K +  A S      + +  T  +
Sbjct: 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 33.0 bits (74), Expect = 0.002
 Identities = 5/67 (7%), Positives = 15/67 (22%), Gaps = 4/67 (5%)

Query: 2   GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS--DGVARLW 59
              +  +A +               +               D      A+S    V  ++
Sbjct: 285 HSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVLDIY 342

Query: 60  NIETGEV 66
           +  + + 
Sbjct: 343 DAASDQD 349

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 32.1 bits (71), Expect = 0.004
 Identities = 9/85 (10%), Positives = 21/85 (24%), Gaps = 2/85 (2%)

Query: 3  LLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASS-DGVARLWN 60
          +   +   Q   +WN      +           V     + D ++L      +     + 
Sbjct: 6  VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 61 IETGEVDKEYSGHQKAITSLAFCDF 85
          I   +    ++       SL     
Sbjct: 66 IAPDDGALTFAAESALPGSLTHIST 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.84
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.81
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.8
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.79
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.78
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.76
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.74
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.74
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.73
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.72
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.71
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.7
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.69
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.69
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.68
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.68
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.65
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.65
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.64
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.63
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.62
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.61
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.59
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.57
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.56
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.54
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.52
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.51
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.5
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.5
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.47
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.46
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.45
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.4
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.3
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.24
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.23
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.22
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.22
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.18
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.18
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.03
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.54
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.35
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.04
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.96
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.46
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.57
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.32
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.22
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.02
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.88
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.88
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.65
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	95.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.43
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	95.23
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.81
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.67
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.33
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	94.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	93.22
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	92.1
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.29
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	89.2
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	88.01
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	87.93
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	85.86
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.58
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	84.73
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.94
d1c8ua2	171	Thioesterase II (TesB) {Escherichia coli [TaxId: 5	83.23

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=6.1e-20  Score=92.43  Aligned_cols=83  Identities=25%  Similarity=0.475  Sum_probs=77.5

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLA   81 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~   81 (85)
                      ..+++++.|+.+++||..+++....+.. +...+.++.++|++.++++++.|+.|++||+++++++..+.+|...|++++
T Consensus       218 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~  296 (317)
T d1vyhc1         218 PFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD  296 (317)
T ss_dssp             CEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred             ceeEeccCCCEEEEEECCCCcEEEEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            5688999999999999999999888887 778899999999999999999999999999999999999999999999999


Q ss_pred             EeCC
Q psy7058          82 FCDF   85 (85)
Q Consensus        82 ~~~~   85 (85)
                      |+|.
T Consensus       297 ~s~~  300 (317)
T d1vyhc1         297 FHKT  300 (317)
T ss_dssp             ECSS
T ss_pred             EcCC
Confidence            9873

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=1.2e-18  Score=88.74  Aligned_cols=85  Identities=18%  Similarity=0.238  Sum_probs=75.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      |+++++++.|+.+++||.........+.. .+...+..+.|+|++.++++++.|+.|++||+.+++.+..+.+|..+|++
T Consensus       238 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~  317 (340)
T d1tbga_         238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC  317 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence            46789999999999999998877766543 24567999999999999999999999999999999999999999999999


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       318 l~~s~d  323 (340)
T d1tbga_         318 LGVTDD  323 (340)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.6e-19  Score=93.75  Aligned_cols=78  Identities=26%  Similarity=0.365  Sum_probs=67.7

Q ss_pred             CceeEEeeCCCc---EEEeeCCCceeeeeeec------------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058           1 MGLLATTSADQT---ARIWNTEDFSLVRELGT------------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~~~~---i~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      |++|++++.|+.   +++||+.+++....+..            +|...|++++|+|+++++++++.|+.|++||+.+++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            468999998874   89999998887766541            377889999999999999999999999999999999


Q ss_pred             cccccccccccee
Q psy7058          66 VDKEYSGHQKAIT   78 (85)
Q Consensus        66 ~~~~~~~~~~~v~   78 (85)
                      ++.++.+|.+.|.
T Consensus       323 ~~~~l~gH~~~v~  335 (393)
T d1sq9a_         323 RITTLNMHCDDIE  335 (393)
T ss_dssp             EEEEEECCGGGCS
T ss_pred             EEEEECCcCCccc
Confidence            9999999887764

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.6e-18  Score=90.71  Aligned_cols=83  Identities=22%  Similarity=0.258  Sum_probs=70.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeec-----cCCCcEEEEEecCCCCEEEEEcCCC---eEEEEEcCCccccccc----
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGT-----ANQRWVWDAAFTLDSKFLLTASSDG---VARLWNIETGEVDKEY----   70 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~----   70 (85)
                      ++++|+.|+.|++||+.+++....+..     .|..+|++++|+|++.++++++.|+   .|++||+..++.+..+    
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            689999999999999999887765543     3677899999999999999998886   5999999887655544    


Q ss_pred             ---------cccccceeEEEEeCC
Q psy7058          71 ---------SGHQKAITSLAFCDF   85 (85)
Q Consensus        71 ---------~~~~~~v~~~~~~~~   85 (85)
                               .+|...|++++|+|.
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd  300 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDS  300 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSS
T ss_pred             ccccceeeeecccCceeeeccCCC
Confidence                     378999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=2.4e-18  Score=89.52  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=70.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc--ccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGE--VDKEYSGHQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~   76 (85)
                      |++|++++.|+.|++||..+++  ....+.+ |..+|.+++|+|++.++++++.|+.|++||+..+.  ....+..|...
T Consensus        19 g~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~   97 (371)
T d1k8kc_          19 RTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA   97 (371)
T ss_dssp             SSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccc
Confidence            5689999999999999997665  3444555 88899999999999999999999999999998664  34456678889


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |.+++|+|.
T Consensus        98 v~~i~~~p~  106 (371)
T d1k8kc_          98 ARCVRWAPN  106 (371)
T ss_dssp             EEEEEECTT
T ss_pred             ccccccccc
Confidence            999999874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3.3e-17  Score=82.38  Aligned_cols=85  Identities=8%  Similarity=0.087  Sum_probs=71.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCC----------CCEEEEEcCCCeEEEEEcCC-cccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLD----------SKFLLTASSDGVARLWNIET-GEVDKE   69 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~~~   69 (85)
                      |.+|++++.|+.+++||+.+++........|...+.++.|+|.          +.++++++.|+.|++|+++. .+.+..
T Consensus       174 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~  253 (287)
T d1pgua2         174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  253 (287)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             ccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE
Confidence            4689999999999999999888766554457888999999874          46899999999999999976 455666


Q ss_pred             ccccccceeEEEEeCC
Q psy7058          70 YSGHQKAITSLAFCDF   85 (85)
Q Consensus        70 ~~~~~~~v~~~~~~~~   85 (85)
                      +.+|...|++++|+|.
T Consensus       254 ~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         254 LNAHKDGVNNLLWETP  269 (287)
T ss_dssp             TTSSTTCEEEEEEEET
T ss_pred             eCCCCCCeEEEEECCC
Confidence            7789999999999873

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=5e-17  Score=83.18  Aligned_cols=83  Identities=5%  Similarity=0.015  Sum_probs=69.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc--cccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD--KEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~v~   78 (85)
                      |+.++.+. ++.+.+||+.+.+....+.. |...|.+++|+|+|+++++++.|+.|++||+......  ..+..|..+|.
T Consensus        29 g~~l~~~~-~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  106 (311)
T d1nr0a1          29 GDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK  106 (311)
T ss_dssp             SSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE
T ss_pred             CCEEEEEe-CCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc
Confidence            34566654 56799999998888777765 8889999999999999999999999999999887654  45778899999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       107 ~v~~s~d  113 (311)
T d1nr0a1         107 DISWDSE  113 (311)
T ss_dssp             EEEECTT
T ss_pred             ccccccc
Confidence            9999873

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=7.7e-17  Score=82.46  Aligned_cols=84  Identities=18%  Similarity=0.272  Sum_probs=71.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeee--eeeccCCCcEEEEEecCCCCEEEEEcC--CCeEEEEEcCCccccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVR--ELGTANQRWVWDAAFTLDSKFLLTASS--DGVARLWNIETGEVDKEYSGHQKA   76 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~   76 (85)
                      |++|++|+.|+.|++||+.+.+...  .+.. +..+|.+++|+|++..+++++.  +..+++|++.+++....+.+|...
T Consensus        70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~  148 (311)
T d1nr0a1          70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  148 (311)
T ss_dssp             SSEEEEEETTSEEEEEESSSTTCCEEEEEEC-SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             CCeEeccccCceEeeeeeecccccccccccc-ccCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999998876543  3444 7788999999999999988875  456999999999988999999999


Q ss_pred             eeEEEEeCC
Q psy7058          77 ITSLAFCDF   85 (85)
Q Consensus        77 v~~~~~~~~   85 (85)
                      |++++|+|.
T Consensus       149 v~~v~~~~~  157 (311)
T d1nr0a1         149 MNSVDFKPS  157 (311)
T ss_dssp             EEEEEECSS
T ss_pred             ccccccccc
Confidence            999999873

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.7e-17  Score=82.83  Aligned_cols=82  Identities=11%  Similarity=0.117  Sum_probs=71.1

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++++++++.|+.+++||+.+++..... . +...+.+++|+|+++++++++.|+.|++||+.+++.+..+. |...|.++
T Consensus       236 ~~~l~~~~~d~~i~i~d~~~~~~~~~~-~-~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~  312 (337)
T d1gxra_         236 GEWLAVGMESSNVEVLHVNKPDKYQLH-L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC  312 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred             ccccceecccccccccccccccccccc-c-cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEE
Confidence            467899999999999999987765432 2 67789999999999999999999999999999998887765 78899999


Q ss_pred             EEeCC
Q psy7058          81 AFCDF   85 (85)
Q Consensus        81 ~~~~~   85 (85)
                      +|+|.
T Consensus       313 ~~s~d  317 (337)
T d1gxra_         313 DISVD  317 (337)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            99873

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1e-16  Score=83.09  Aligned_cols=83  Identities=30%  Similarity=0.520  Sum_probs=71.2

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec-----------------cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT-----------------ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      |++|++|+ |+.|++||+.+++....+..                 .+...|.+++|+|+++++++++.|+.|++|+...
T Consensus        74 g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~  152 (388)
T d1erja_          74 GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN  152 (388)
T ss_dssp             SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccc
Confidence            56788876 89999999998877665532                 2345689999999999999999999999999999


Q ss_pred             ccccccccccccceeEEEEeC
Q psy7058          64 GEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        64 ~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      ++....+.+|...|.++.|++
T Consensus       153 ~~~~~~~~~h~~~v~~~~~~~  173 (388)
T d1erja_         153 RKIVMILQGHEQDIYSLDYFP  173 (388)
T ss_dssp             TEEEEEECCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccc
Confidence            998888889999999999876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.4e-16  Score=82.51  Aligned_cols=83  Identities=19%  Similarity=0.370  Sum_probs=66.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeee-----------eccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVREL-----------GTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKE   69 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (85)
                      |++|++++.|+.+++||+.++......           ...+...+.+++|+|++.++++++.|+.|++||+++++++..
T Consensus       266 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~  345 (388)
T d1erja_         266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM  345 (388)
T ss_dssp             SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            467899999999999999765432211           112567899999999999999999999999999999999999


Q ss_pred             ccccccceeEEEEe
Q psy7058          70 YSGHQKAITSLAFC   83 (85)
Q Consensus        70 ~~~~~~~v~~~~~~   83 (85)
                      +.+|...|.+++++
T Consensus       346 l~~H~~~V~~~~~~  359 (388)
T d1erja_         346 LQGHRNSVISVAVA  359 (388)
T ss_dssp             EECCSSCEEEEEEC
T ss_pred             EeCCCCCEEEEEEe
Confidence            99999999998764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=2.7e-16  Score=81.75  Aligned_cols=83  Identities=19%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCce------------------eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTEDFS------------------LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |+++++++.|+.+++||.....                  ...... .+...+.+++|+|++..+++++.|+.|++||+.
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeecccccccccccCCcceEEeee
Confidence            4678999999999999986432                  122222 266779999999999999999999999999999


Q ss_pred             CccccccccccccceeEEEEeC
Q psy7058          63 TGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        63 ~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .++.+..+..|..+|.+++|+|
T Consensus       232 ~~~~~~~~~~~~~~v~s~~fs~  253 (371)
T d1k8kc_         232 KKMAVATLASETLPLLAVTFIT  253 (371)
T ss_dssp             GTTEEEEEECSSCCEEEEEEEE
T ss_pred             cccceeeeecccccceeeeecC
Confidence            9999999999999999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-16  Score=79.84  Aligned_cols=83  Identities=25%  Similarity=0.464  Sum_probs=65.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeecc--CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc-----cc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTA--NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS-----GH   73 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~   73 (85)
                      ++++++++.|+.|++||....+....+...  +...+.++.+  ++.++++++.|+.|++||+++++.+..+.     +|
T Consensus       227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence            367899999999999999888777666542  3445566655  56799999999999999999998776653     56


Q ss_pred             ccceeEEEEeCC
Q psy7058          74 QKAITSLAFCDF   85 (85)
Q Consensus        74 ~~~v~~~~~~~~   85 (85)
                      ...|++++|+|.
T Consensus       305 ~~~v~~v~~s~~  316 (342)
T d2ovrb2         305 GGVVWRIRASNT  316 (342)
T ss_dssp             TCEEEEEEECSS
T ss_pred             CCCEEEEEECCC
Confidence            778999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=8.9e-16  Score=78.00  Aligned_cols=83  Identities=18%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc--cccccceeE
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY--SGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~v~~   79 (85)
                      .++++++.|+.+++||+++++....+.. +...+.+++|+|++.++++++.|+.+++|+++.......+  ..+...+.+
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            4678999999999999999999888876 8888999999999999999999999999999988766544  345677899


Q ss_pred             EEEeCC
Q psy7058          80 LAFCDF   85 (85)
Q Consensus        80 ~~~~~~   85 (85)
                      ++|+|.
T Consensus       276 ~~~s~~  281 (340)
T d1tbga_         276 VSFSKS  281 (340)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            999873

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=5.6e-16  Score=78.18  Aligned_cols=85  Identities=9%  Similarity=0.145  Sum_probs=70.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc---ccccccccce
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD---KEYSGHQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~v   77 (85)
                      ++++++++.|+.+++||+.+.+........+...+.++.|+|++.++++++.++.+++|++.++...   ..+..|...|
T Consensus       148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  227 (299)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3578999999999999998776654433347788999999999999999999999999999876543   3456788999


Q ss_pred             eEEEEeCC
Q psy7058          78 TSLAFCDF   85 (85)
Q Consensus        78 ~~~~~~~~   85 (85)
                      ++++|+|.
T Consensus       228 ~~l~~s~~  235 (299)
T d1nr0a2         228 ACVSWSPD  235 (299)
T ss_dssp             EEEEECTT
T ss_pred             cccccccc
Confidence            99999874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-15  Score=75.89  Aligned_cols=68  Identities=25%  Similarity=0.445  Sum_probs=58.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |++|++|+.|+.|++||+.+++....+.+ |...|.++.|  +++++++++.|+.+++|++..+.......
T Consensus        25 ~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          25 DQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             SSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeec--ccceeeccccccccccccccccccccccc
Confidence            57899999999999999999999988887 8888998876  67899999999999999998776544433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.7e-15  Score=77.04  Aligned_cols=68  Identities=19%  Similarity=0.449  Sum_probs=59.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEY   70 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   70 (85)
                      |++|++|+.|+.|++||+.+++....+.+ |...|.+++|+++ ..+++++.|+.+++|+....+.....
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~   90 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVF   90 (355)
T ss_dssp             TTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCC-CEEEEEeccccccccccccccccccc
Confidence            57899999999999999999999999887 8889999999985 47899999999999999877655443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=6.9e-15  Score=73.78  Aligned_cols=83  Identities=19%  Similarity=0.422  Sum_probs=75.8

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++.+++++.|+.+++||+.+++....+.. +...+.++.+++++..+++++.|+.+++|++.+.+....+..+...+.++
T Consensus       113 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~  191 (317)
T d1vyhc1         113 GDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI  191 (317)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CceEEeeccCcceeEeecccceeeeEEcc-CCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEE
Confidence            35789999999999999999988888876 77789999999999999999999999999999999888888899999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|+|
T Consensus       192 ~~~~  195 (317)
T d1vyhc1         192 SWAP  195 (317)
T ss_dssp             EECC
T ss_pred             EEee
Confidence            9876

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5.4e-15  Score=74.23  Aligned_cols=83  Identities=12%  Similarity=0.221  Sum_probs=68.3

Q ss_pred             ceeEEeeCC-CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc-cccccccceeE
Q psy7058           2 GLLATTSAD-QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK-EYSGHQKAITS   79 (85)
Q Consensus         2 ~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~v~~   79 (85)
                      +.+++++.+ +.+++|++...+........+...+.+++|+|++.++++++.++.|++||+.++.... .+..|...|.+
T Consensus       131 ~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~  210 (287)
T d1pgua2         131 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA  210 (287)
T ss_dssp             SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE
T ss_pred             cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccce
Confidence            456666655 5799999987776666655567789999999999999999999999999998887553 46788999999


Q ss_pred             EEEeC
Q psy7058          80 LAFCD   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      ++|+|
T Consensus       211 ~~~~p  215 (287)
T d1pgua2         211 ISWKP  215 (287)
T ss_dssp             EEECC
T ss_pred             eeecc
Confidence            99987

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.5e-15  Score=75.17  Aligned_cols=84  Identities=19%  Similarity=0.362  Sum_probs=71.6

Q ss_pred             CceeEEeeCCCcEEEeeCCCce--eeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFS--LVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |++|++++.|+.|++||+....  ....+.. +...+..+.++|++..+++++.++.+++|++.+++.......|...+.
T Consensus       109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCEEEEeeccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999987543  3344444 677899999999999999999999999999999988888888999999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|++.
T Consensus       188 ~l~~s~~  194 (337)
T d1gxra_         188 CIDISND  194 (337)
T ss_dssp             EEEECTT
T ss_pred             ccccccc
Confidence            9999863

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-14  Score=73.80  Aligned_cols=74  Identities=24%  Similarity=0.465  Sum_probs=60.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccce
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v   77 (85)
                      |++|++|+.|+.|++||+.++++...+.+ |...|.++.+++  ..+++++.|+.+++|+............+...+
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~  100 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTV  100 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCC--CccccceecccccccccccccceecccccceeE
Confidence            57899999999999999999999888877 888899999986  489999999999999987665444443333333

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.9e-15  Score=77.47  Aligned_cols=74  Identities=18%  Similarity=0.341  Sum_probs=58.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEec---CCCCEEEEEcCCCeEEEEEcCCcccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFT---LDSKFLLTASSDGVARLWNIETGEVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   75 (85)
                      +.++++++.|+.|++||+++++....+.. +...+..+.++   +++.++++++.|+.|++||+++++++..+..+..
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             ceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence            35789999999999999999998888875 44444333333   5889999999999999999999988877665544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=2.1e-14  Score=72.38  Aligned_cols=83  Identities=14%  Similarity=0.063  Sum_probs=63.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc---ccccccccce
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD---KEYSGHQKAI   77 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~v   77 (85)
                      |++|++|+.|+.|++||+.+++....+...|...+.++.|+|++.++ +++.|+.+++|+.......   .....+...+
T Consensus        24 g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (299)
T d1nr0a2          24 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP  102 (299)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccccccccc
Confidence            56899999999999999999988887765578889999999999755 5567889999998654321   1122345566


Q ss_pred             eEEEEeC
Q psy7058          78 TSLAFCD   84 (85)
Q Consensus        78 ~~~~~~~   84 (85)
                      .+++|+|
T Consensus       103 ~~~~~s~  109 (299)
T d1nr0a2         103 LGLAVSA  109 (299)
T ss_dssp             EEEEECT
T ss_pred             ccccccc
Confidence            7777765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.2e-14  Score=73.50  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeec--cCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCccccccccccccceeE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGT--ANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITS   79 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~   79 (85)
                      ++++++.|+.+++||..+.+.......  .+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+.+|..++..
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~  253 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG  253 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccc
Confidence            467899999999999988776665543  35677999999996 688999999999999999999998888888777655


Q ss_pred             EEEe
Q psy7058          80 LAFC   83 (85)
Q Consensus        80 ~~~~   83 (85)
                      +.|+
T Consensus       254 ~~~s  257 (325)
T d1pgua1         254 GIFA  257 (325)
T ss_dssp             CEEE
T ss_pred             ceee
Confidence            4443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.57  E-value=1.7e-14  Score=76.19  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      ++++.+.|+.|++||+.+++.+..+.. + ..+..++|+|||+++++++.|+.+++||+.+++..
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~   96 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDT-G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT   96 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEEC-C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee
Confidence            357788899999999999999999886 3 34889999999999999999999999999887643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.2e-13  Score=70.13  Aligned_cols=83  Identities=22%  Similarity=0.434  Sum_probs=74.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      ++.++++..|+.+++||+.+++....... ....+.++.+++++..+++++.|+.+++|+++++..+..+.+|...|.++
T Consensus       171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~  249 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL  249 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE
T ss_pred             cceeeeecccceeeeeecccccceeeeec-cccccccccccccceeeecccccceEEeeecccccccccccccccccccc
Confidence            35788999999999999999888877766 56678999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      +|++
T Consensus       250 ~~~~  253 (355)
T d1nexb2         250 RLSD  253 (355)
T ss_dssp             EECS
T ss_pred             cccc
Confidence            9876

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.8e-14  Score=71.57  Aligned_cols=71  Identities=11%  Similarity=0.011  Sum_probs=55.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeee--ccCCCcEEEEEecCC-CCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELG--TANQRWVWDAAFTLD-SKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      |++|++++.|+.|++||+.+......+.  ..|..+|.+++|+++ +..+++++.|+.+++|++..........
T Consensus        23 ~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~   96 (342)
T d1yfqa_          23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALT   96 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECB
T ss_pred             CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccc
Confidence            4689999999999999987654433222  137888999999986 5678999999999999998766544443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.52  E-value=2e-13  Score=69.82  Aligned_cols=83  Identities=14%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             CceeEEeeCC--CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSAD--QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |++|++++.+  ..+++||..+++... +.. +...+..++|+|+++++++++.++.+++|++..++....+..+...+.
T Consensus        54 g~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (360)
T d1k32a3          54 TKVAFIHGTREGDFLGIYDYRTGKAEK-FEE-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  131 (360)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEE-CCC-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcEEE-eeC-CCceEEeeeecccccccceeccccccccccccccceeeeeeccccccc
Confidence            4567766544  378999999876654 333 677799999999999999999999999999999888888888888888


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus       132 ~~~~spd  138 (360)
T d1k32a3         132 DFTISDN  138 (360)
T ss_dssp             CEEECTT
T ss_pred             chhhccc
Confidence            8888873

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.8e-13  Score=67.94  Aligned_cols=80  Identities=23%  Similarity=0.406  Sum_probs=64.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCc---------cccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETG---------EVDKEYSG   72 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~   72 (85)
                      ..+++++.|+.+++||+++.+....... +...+..  +++++..+++++.|+.|++||+...         ..+..+.+
T Consensus       189 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (293)
T d1p22a2         189 RLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE  265 (293)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred             CeEEEecCCCEEEEEecccceeeeeecc-cceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC
Confidence            5789999999999999999888877766 5555654  4567889999999999999998543         23456778


Q ss_pred             cccceeEEEEeC
Q psy7058          73 HQKAITSLAFCD   84 (85)
Q Consensus        73 ~~~~v~~~~~~~   84 (85)
                      |...|++++|++
T Consensus       266 H~~~V~~v~~d~  277 (293)
T d1p22a2         266 HSGRVFRLQFDE  277 (293)
T ss_dssp             CSSCCCCEEECS
T ss_pred             CCCCEEEEEEcC
Confidence            999999999876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=2.7e-13  Score=68.93  Aligned_cols=71  Identities=7%  Similarity=-0.031  Sum_probs=58.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCcccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      ++++++++.++.|.+||+.+++.+.++...+......+.|+|||+++ +++..++.|.+||+.+++....+.
T Consensus         8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            47899999999999999999999888775445556899999999986 456678999999999887665544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=1.6e-13  Score=69.62  Aligned_cols=83  Identities=11%  Similarity=0.058  Sum_probs=64.1

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCccccccccccc-----
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYSGHQ-----   74 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~-----   74 (85)
                      +++++++.|+.|++||+.+++....+... ....+..++++|||+++ ++++.++.|.+||+.+++.+..+..+.     
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57899999999999999999998888653 23446789999999987 466788999999999988776655332     


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+..++|+|
T Consensus        82 ~~~~~v~~s~   91 (337)
T d1pbyb_          82 KSLFGAALSP   91 (337)
T ss_dssp             ECTTCEEECT
T ss_pred             cceeeEEEcC
Confidence            2334455554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.3e-13  Score=68.09  Aligned_cols=82  Identities=24%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeee---------eee-----ccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVR---------ELG-----TANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD   67 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   67 (85)
                      ..+++++.|+.+.+|+........         ...     ..+...+++++|+|++.++++++.||.|++||+.+++.+
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l  286 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI  286 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE
Confidence            457889999999999875432211         000     124456899999999999999999999999999999888


Q ss_pred             ccccc-cccceeEEEEe
Q psy7058          68 KEYSG-HQKAITSLAFC   83 (85)
Q Consensus        68 ~~~~~-~~~~v~~~~~~   83 (85)
                      ..+.. +...+.+++++
T Consensus       287 ~~~~~~~~~~~~~~s~~  303 (342)
T d1yfqa_         287 KNFAKFNEDSVVKIACS  303 (342)
T ss_dssp             EECCCCSSSEEEEEEEC
T ss_pred             EEecCCCCCEEEEEEeC
Confidence            87753 44455554443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.46  E-value=1.1e-12  Score=67.03  Aligned_cols=80  Identities=11%  Similarity=0.133  Sum_probs=62.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC--CeEEEEEcCCcccccccccccccee
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD--GVARLWNIETGEVDKEYSGHQKAIT   78 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~v~   78 (85)
                      |+++++++ ++.+++||+.++.... +  .|...+.+++|+|||+.+++++.+  ..+++||...++.. .+..|...+.
T Consensus        15 G~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~   89 (360)
T d1k32a3          15 GDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVF   89 (360)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEE
T ss_pred             CCEEEEEE-CCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEE
Confidence            46677766 4789999998776554 3  367789999999999998876544  37999999876644 5566889999


Q ss_pred             EEEEeCC
Q psy7058          79 SLAFCDF   85 (85)
Q Consensus        79 ~~~~~~~   85 (85)
                      +++|+|.
T Consensus        90 ~~~~spd   96 (360)
T d1k32a3          90 AMGVDRN   96 (360)
T ss_dssp             EEEECTT
T ss_pred             eeeeccc
Confidence            9999984

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=5.2e-13  Score=70.94  Aligned_cols=61  Identities=13%  Similarity=0.175  Sum_probs=54.4

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      +++.+.++.+.+||..+++....+.. + ..+..+.|+|||+++++++.|+.+++||+.+++.
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~-g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~   95 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDT-G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP   95 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEEC-S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCc
Confidence            57889999999999999999999986 3 3589999999999999999999999999987653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.40  E-value=9.2e-12  Score=62.31  Aligned_cols=78  Identities=8%  Similarity=0.058  Sum_probs=61.5

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      +++.+.++.|.+||+.+++.+.++..  ......++++|+|+++ +++..++.|++||+.+++.+..+..+. ....+.|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccc
Confidence            35677889999999999999888875  2346889999999987 466788999999999998887776544 3456666


Q ss_pred             eC
Q psy7058          83 CD   84 (85)
Q Consensus        83 ~~   84 (85)
                      ++
T Consensus        82 ~~   83 (301)
T d1l0qa2          82 SP   83 (301)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.30  E-value=7.1e-11  Score=60.87  Aligned_cols=80  Identities=9%  Similarity=-0.001  Sum_probs=65.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE--EEEEcCCCeEEEEEcCCccccccccccccceeEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF--LLTASSDGVARLWNIETGEVDKEYSGHQKAITSL   80 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~   80 (85)
                      .++....++.+.+||..+++....+..  ...+..+.|+|||+.  +++++.++.|++||+.+++.+..+..+......+
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEecC--CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEE
Confidence            345667778899999999988887764  455889999999984  4678899999999999999999998777777777


Q ss_pred             EEeC
Q psy7058          81 AFCD   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ++.+
T Consensus       368 ~~~~  371 (373)
T d2madh_         368 SVMN  371 (373)
T ss_pred             EEec
Confidence            6654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.24  E-value=6.3e-12  Score=66.77  Aligned_cols=72  Identities=15%  Similarity=-0.066  Sum_probs=53.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCcee--eeeeec--cCCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSL--VRELGT--ANQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      |++++++++|+.+.+||+.+++.  ...+..  .+...+.+..|+|||+++ +++..++.+++||..++++...+..
T Consensus        73 G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~  149 (432)
T d1qksa2          73 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  149 (432)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeecc
Confidence            67899999999999999987654  333332  133445556778899976 6778899999999998877665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.23  E-value=1.2e-11  Score=65.25  Aligned_cols=75  Identities=11%  Similarity=-0.040  Sum_probs=55.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeee--eeec--cCCCcEEEEEecCCCCEEEE-EcCCCeEEEEEcCCcccccccccccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVR--ELGT--ANQRWVWDAAFTLDSKFLLT-ASSDGVARLWNIETGEVDKEYSGHQK   75 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~   75 (85)
                      |+++++++.|+.+++||+.+++...  .+..  .+...+.++.|+|||++++. +..++.+.+||...+.....+..+..
T Consensus        73 Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~  152 (426)
T d1hzua2          73 GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM  152 (426)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred             CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence            6789999999999999998886543  3332  13344567778899998754 45789999999998877665554443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=6e-11  Score=60.09  Aligned_cols=81  Identities=10%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeee-ccCCCcEEEEEecCCCCEEEE-EcCCCeEEEEEcCCcccccccc---cccccee
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELG-TANQRWVWDAAFTLDSKFLLT-ASSDGVARLWNIETGEVDKEYS---GHQKAIT   78 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~---~~~~~v~   78 (85)
                      +++++.++.|++|++.+......+. ..+...+..++|+|||+++++ +..++.|++|++........+.   .....+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            5778899999999987543332222 125567899999999998855 4558999999987654333222   2334456


Q ss_pred             EEEEeC
Q psy7058          79 SLAFCD   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      .++|+|
T Consensus        87 ~l~~sp   92 (333)
T d1ri6a_          87 HISTDH   92 (333)
T ss_dssp             EEEECT
T ss_pred             EEEEcC
Confidence            677776

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=1.5e-10  Score=58.49  Aligned_cols=61  Identities=10%  Similarity=0.070  Sum_probs=53.1

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      ++.+++||+.+++....+..  ...+.++.|+|+|+.+++++.++.|++||..+++.+.+++.
T Consensus       259 ~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         259 YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             cccEEEEECCCCcEEEEEcC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            57899999999998888764  44578999999999999999999999999999988877653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.18  E-value=5.3e-10  Score=55.81  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=50.4

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEE-EEEcCCCeEEEEEcCCcccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFL-LTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .++.+.+||+.+++....+..  ...+..++|+|+|+++ +++..++.|++||+.+++.+.++.
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeeeecCCCeEEEEEcC--CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            346799999999988877764  3447899999999976 577789999999999998877765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.18  E-value=1.1e-10  Score=59.14  Aligned_cols=63  Identities=13%  Similarity=0.041  Sum_probs=53.6

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      ++.+.+||..+++....+..  ...+.+++|+|||+.+++++.++.|++||..+++.+.++....
T Consensus       271 ~~~v~v~d~~~~~~~~~~~~--~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         271 LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCeEEEEECCCCcEEEEEcC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            35799999999988887764  3458899999999999999999999999999999888777443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.03  E-value=2.1e-09  Score=54.85  Aligned_cols=70  Identities=9%  Similarity=0.068  Sum_probs=54.1

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC--EEEEEcCCCeEEEEEcCCccccccccccccceeEEEE
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK--FLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAF   82 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (85)
                      ..+.+||..+++....+..  ...+.++.|+|||+  +++++..++.|++||+.+++.+.++..+...-..+.+
T Consensus       280 ~~v~v~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             EEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEC
T ss_pred             CeEEEEeCCCCcEEEEecC--CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEe
Confidence            4688999999988877764  34478899999997  3566778999999999999998888765554444443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=2.9e-08  Score=52.76  Aligned_cols=76  Identities=9%  Similarity=0.082  Sum_probs=59.0

Q ss_pred             CCCcEEEeeCCCceeeeeeec----cCCCcEEEEEecCCCCEEEEEcC---------CCeEEEEEcCCcccccccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGT----ANQRWVWDAAFTLDSKFLLTASS---------DGVARLWNIETGEVDKEYSGHQK   75 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~   75 (85)
                      .++.+.+||+.+++....+..    .+...+.++.|+|||++++..+.         ++.+.+||+..++ ...+..+..
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~  112 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPN  112 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCT
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCc
Confidence            477899999999887655443    13456899999999999887643         4678899998776 455667888


Q ss_pred             ceeEEEEeCC
Q psy7058          76 AITSLAFCDF   85 (85)
Q Consensus        76 ~v~~~~~~~~   85 (85)
                      .+..+.|||.
T Consensus       113 ~~~~~~~SPD  122 (470)
T d2bgra1         113 NTQWVTWSPV  122 (470)
T ss_dssp             TEEEEEECSS
T ss_pred             cccccccccC
Confidence            8999999984

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.75  E-value=1.7e-07  Score=48.08  Aligned_cols=62  Identities=6%  Similarity=-0.090  Sum_probs=47.7

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc----------CCCeEEEEEcCCccccccccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS----------SDGVARLWNIETGEVDKEYSGHQ   74 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~   74 (85)
                      ...+.+||..+++.+..+.. ..  ...+.|+|||+.++++.          .++.|.+||..+++....+..+.
T Consensus        46 ~~~v~v~D~~tg~~~~~~~~-~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~  117 (373)
T d2madh_          46 IIQQWVLDAGSGSILGHVNG-GF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD  117 (373)
T ss_pred             CceEEEEECCCCCEEEEEeC-CC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCC
Confidence            35699999999999888765 32  23689999999988764          35789999999888776655443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=4.6e-08  Score=49.85  Aligned_cols=60  Identities=10%  Similarity=0.044  Sum_probs=45.9

Q ss_pred             CCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEE----------cCCCeEEEEEcCCcccccccc
Q psy7058           9 ADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTA----------SSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         9 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .+..+.+||..+++.+.++....   ...++|+|||+.++..          ..++.|++||..+++....+.
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~---~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~   95 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGF---LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE   95 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE
T ss_pred             CcCeEEEEECCCCcEEEEEECCC---CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe
Confidence            45579999999999988877633   2368999999987654          346789999999887665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.7e-07  Score=46.48  Aligned_cols=84  Identities=10%  Similarity=-0.013  Sum_probs=50.8

Q ss_pred             CceeE-EeeCCCcEEEeeCCCceeeeeee--ccCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCcccccc--ccccc
Q psy7058           1 MGLLA-TTSADQTARIWNTEDFSLVRELG--TANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEVDKE--YSGHQ   74 (85)
Q Consensus         1 g~~l~-~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~--~~~~~   74 (85)
                      |++|+ ++..|+.|.+|++..........  .........+.++|||+++++++. ++.+.+|+.........  ...+.
T Consensus        48 G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~  127 (333)
T d1ri6a_          48 KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL  127 (333)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCC
Confidence            46664 45558999999987553322221  113334667999999999888764 67888888765543222  22233


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+.++.++|
T Consensus       128 ~~~~~v~~s~  137 (333)
T d1ri6a_         128 DGCHSANISP  137 (333)
T ss_dssp             TTBCCCEECT
T ss_pred             ccceEEEeee
Confidence            3444444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.54  E-value=2.5e-07  Score=47.75  Aligned_cols=59  Identities=3%  Similarity=-0.097  Sum_probs=47.7

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE--EEEEcCCCeEEEEEcCCccccccccc
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF--LLTASSDGVARLWNIETGEVDKEYSG   72 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (85)
                      .+.+||..+++....+..  ...+..+.|+|||+.  +++...++.|++||..+++.+..+..
T Consensus       295 ~v~v~D~~t~~~~~~~~~--~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         295 NTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             eEEEEECCCCcEeEEecC--CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            488899999988877664  345788999999863  45667789999999999998888774

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.35  E-value=1.5e-06  Score=46.14  Aligned_cols=56  Identities=5%  Similarity=-0.146  Sum_probs=43.1

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDK   68 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   68 (85)
                      ++.+.+||+.+++... +.. +...+..+.|+|||+.++.. .++.+++++...++..+
T Consensus        91 ~~~~~l~d~~~~~~~~-l~~-~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          91 TASYDIYDLNKRQLIT-EER-IPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             EEEEEEEETTTTEECC-SSC-CCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE
T ss_pred             CceEEEEECCCCcccc-ccc-CCccccccccccCcceeeEe-ecccceEEECCCCceee
Confidence            4578899999877543 333 56678999999999999885 56789999988776443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=1.6e-06  Score=44.73  Aligned_cols=65  Identities=11%  Similarity=0.049  Sum_probs=47.7

Q ss_pred             eeCCCcEEEeeCCCceeeeeeeccC------CCcEEEEEecCCCCEEEEEc-CCCeEEEEEcCCcccccccc
Q psy7058           7 TSADQTARIWNTEDFSLVRELGTAN------QRWVWDAAFTLDSKFLLTAS-SDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         7 ~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +..++.|.+||..+++....+....      ......+.|+|||++++.+. .++.+.+||+..++....+.
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~  163 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK  163 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee
Confidence            3457789999999998877765311      11123588999999887765 57899999998887666554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.04  E-value=2.7e-05  Score=41.70  Aligned_cols=81  Identities=11%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeecc-----------------------------CCCcEEEEEecCCCCEEEEE-cCC
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTA-----------------------------NQRWVWDAAFTLDSKFLLTA-SSD   53 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~-~~~   53 (85)
                      +++++.+|.+.+|++.+++.+.++...                             |..........|||++++.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            568889999999999998877765321                             11224445557899988655 467


Q ss_pred             CeEEEEEcCCcccccccc-ccccceeEEEEeC
Q psy7058          54 GVARLWNIETGEVDKEYS-GHQKAITSLAFCD   84 (85)
Q Consensus        54 ~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~   84 (85)
                      ..|.++|+.+++....+. .+....+.++|+|
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp  125 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQK  125 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECC
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEec
Confidence            899999999887766543 2456777777775

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=0.00013  Score=35.76  Aligned_cols=52  Identities=10%  Similarity=0.077  Sum_probs=36.7

Q ss_pred             CcEEEEEecCCCCEEEEEcC---CCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          33 RWVWDAAFTLDSKFLLTASS---DGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      .......|+|||+.++..+.   ...|+++++..+.. ..+......+...+|+|+
T Consensus       214 ~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         214 FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence            34567789999998875443   34688888875543 445545677888999995

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.46  E-value=0.0018  Score=34.80  Aligned_cols=52  Identities=8%  Similarity=0.006  Sum_probs=37.6

Q ss_pred             CceeE-EeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC--EEEEEcC
Q psy7058           1 MGLLA-TTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK--FLLTASS   52 (85)
Q Consensus         1 g~~l~-~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   52 (85)
                      |++|. +...+..|.++|+.+++....+..........++++|+++  +++..++
T Consensus        83 Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~  137 (441)
T d1qnia2          83 GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAE  137 (441)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccC
Confidence            35564 4456778999999999888776654556689999999988  4444433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.38  E-value=0.0017  Score=32.96  Aligned_cols=61  Identities=8%  Similarity=0.086  Sum_probs=44.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCC-EEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSK-FLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~   62 (85)
                      |+++++....+.|.+||...++....+.. ......+++|.++++ .+++...++.|..+++.
T Consensus       237 GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CcEEEEEcCCCEEEEEeCCCCEEEEEEEC-CCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            45556666678899999877776665554 234578899999886 45666778888888875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.02  E-value=0.004  Score=30.28  Aligned_cols=63  Identities=14%  Similarity=0.035  Sum_probs=40.7

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcC----CC--eEEEEEcCCccc
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASS----DG--VARLWNIETGEV   66 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~i~~~~~~~~~~   66 (85)
                      |++++-.+ ++.|.+.|+.+++... +.. .........|+|||+.++....    +.  .|.+++...++.
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRK-IVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEE-EEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEE-Eec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45555444 3568888998877654 333 4556788999999998875432    22  366667665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0023  Score=34.34  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             eCCCcEEEeeCCCceeeeeeecc--CCCcEEEEEecCCCCEEEEEc---------CCCeEEEEEcCCccccc--cccccc
Q psy7058           8 SADQTARIWNTEDFSLVRELGTA--NQRWVWDAAFTLDSKFLLTAS---------SDGVARLWNIETGEVDK--EYSGHQ   74 (85)
Q Consensus         8 ~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~--~~~~~~   74 (85)
                      ..++.+.+||+.+++....+...  ....+....++||+++++...         ..+...++|+.++....  ......
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~  113 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc
Confidence            45778999999887664433331  223466778999999877653         34678899998765322  222223


Q ss_pred             cceeEEEEeC
Q psy7058          75 KAITSLAFCD   84 (85)
Q Consensus        75 ~~v~~~~~~~   84 (85)
                      ..+....|||
T Consensus       114 ~~l~~~~wSP  123 (465)
T d1xfda1         114 AKLQYAGWGP  123 (465)
T ss_dssp             CCCSBCCBCS
T ss_pred             cccceeeecc
Confidence            3444456665

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.011  Score=28.72  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=42.4

Q ss_pred             cEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC---CeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          12 TARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD---GVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        12 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .|.+.|....+......  ....+..-+|||||+.++.....   ..+.+.+...+... .+..+........|+|
T Consensus        20 ~l~i~d~dG~~~~~l~~--~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sp   92 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP   92 (269)
T ss_dssp             EEEEEETTSCSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT
T ss_pred             EEEEEcCCCCCcEEEec--CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecC
Confidence            58888876555444443  34557889999999999865433   24555565544432 2223445555666665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.55  E-value=0.013  Score=29.64  Aligned_cols=50  Identities=12%  Similarity=0.134  Sum_probs=38.3

Q ss_pred             EEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          35 VWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      .-.+++..+|...++....+.|..|+...++....+........+++|.|
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~  277 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP  277 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC
Confidence            45788899999888777788999999877766655655556677888865

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.32  E-value=0.019  Score=28.74  Aligned_cols=59  Identities=12%  Similarity=-0.023  Sum_probs=39.0

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcC
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIE   62 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (85)
                      |+++++...++.|..++.. ++... +.. .......++++++|.++++...++.+..++..
T Consensus        39 G~l~vt~~~~~~I~~i~p~-g~~~~-~~~-~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          39 GTIFVTNHEVGEIVSITPD-GNQQI-HAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             SCEEEEETTTTEEEEECTT-CCEEE-EEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEeCC-CCEEE-EEc-CCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            4556666667777777644 33222 222 44568899999999988887777777776654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.015  Score=31.14  Aligned_cols=56  Identities=4%  Similarity=-0.200  Sum_probs=36.6

Q ss_pred             CCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058          10 DQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      .+...++|+.++........ .....+....|+|+|+.++... ++.|.+.+...+..
T Consensus        90 ~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~  146 (465)
T d1xfda1          90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA  146 (465)
T ss_dssp             CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC
T ss_pred             cccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce
Confidence            45677889887765433222 1233456688999999988764 56787777765543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.22  E-value=0.02  Score=28.04  Aligned_cols=61  Identities=10%  Similarity=0.041  Sum_probs=38.6

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCC
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIET   63 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   63 (85)
                      +.+++...++.+..+|...... .............+++.+++.++++...++.|..++...
T Consensus       152 ~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         152 NVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             CEeeecccccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            3445555566677777654332 222221334467899999998888877788888777543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.02  E-value=0.01  Score=32.63  Aligned_cols=59  Identities=14%  Similarity=0.150  Sum_probs=42.3

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+.-||..+++..-+......  ...-.++-.+..+++++.|+.++.+|..+++.+.++.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p--~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP--WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCC--CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            4678889999888776654221  1111123357788889999999999999999887765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.88  E-value=0.032  Score=27.56  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             ceeEEee-CCCcEEEeeCCCceeeeeeecc-CCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccc
Q psy7058           2 GLLATTS-ADQTARIWNTEDFSLVRELGTA-NQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEV   66 (85)
Q Consensus         2 ~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (85)
                      +.+++-. .+..|.+++ .+++.+..+... .......+++.++|.+++ .+.++.|++|...+..+
T Consensus       212 ~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         212 EILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             eEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            3444433 334577887 446666555432 223568899999997655 45789999999876544

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.88  E-value=0.041  Score=30.33  Aligned_cols=46  Identities=11%  Similarity=0.034  Sum_probs=32.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   46 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (85)
                      |.++++++.|+.++.+|..+++.+-+........-.-+.+..+|+.
T Consensus       497 gglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4578889999999999999999998776533222222444557754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.65  E-value=0.01  Score=32.85  Aligned_cols=59  Identities=14%  Similarity=0.231  Sum_probs=41.3

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+.-||..+++..-+......  ...-.++..+..++.++.|+.++-+|..+++.+.++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~--~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFA--VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCCCC--CccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            5688889888887655543111  1111122356777789999999999999999887765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=95.44  E-value=0.053  Score=27.04  Aligned_cols=50  Identities=14%  Similarity=0.146  Sum_probs=35.3

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeC
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCD   84 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~   84 (85)
                      ..+..+++.|||+++++...++.|..++... + ...+......+..++|.+
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~   77 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS   77 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC
Confidence            3578899999999999988899888887542 2 223333445667777665

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.43  E-value=0.024  Score=31.09  Aligned_cols=59  Identities=7%  Similarity=0.195  Sum_probs=41.7

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+.-+|+.+++..-+......  ...-.++-.+.+++.++.|+.++-+|..+++.+.++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~--~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH--WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS--CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC--CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            5677889998888776654221  1111122346677789999999999999999887766

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.32  E-value=0.015  Score=32.05  Aligned_cols=60  Identities=13%  Similarity=0.260  Sum_probs=42.6

Q ss_pred             CCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058          10 DQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        10 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      .+.+.-+|+.+++..-+......  ...-.++..+..++.++.|+.++-+|..+++.+.+++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p--~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLP--LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC--CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCC--CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            35688888888887766654221  2211123356677789999999999999999887766

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.23  E-value=0.061  Score=26.52  Aligned_cols=68  Identities=9%  Similarity=0.238  Sum_probs=43.0

Q ss_pred             ceeEEeeCCCcEEEeeCCCceeeeeeec-cCCCcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCcccccccc
Q psy7058           2 GLLATTSADQTARIWNTEDFSLVRELGT-ANQRWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEVDKEYS   71 (85)
Q Consensus         2 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.+++....+.|++||.. ++....+.. ........+++.++|..+++-.. ++.|.+|+. +++.+..+.
T Consensus       169 ~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~  238 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE  238 (279)
T ss_dssp             EEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE
T ss_pred             eEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEe
Confidence            345566666778888854 555555532 12334678999999987766443 457888884 466554443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.81  E-value=0.027  Score=31.02  Aligned_cols=59  Identities=10%  Similarity=0.109  Sum_probs=40.1

Q ss_pred             CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccccccc
Q psy7058          11 QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYS   71 (85)
Q Consensus        11 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   71 (85)
                      +.|.-+|..+++..-+......  ..+-.++-.+..+++++.|+.++-+|.++++.+.++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~--~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCC--CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            5677888888887765543211  1111112245677789999999999999999887765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.71  E-value=0.06  Score=29.62  Aligned_cols=29  Identities=14%  Similarity=0.035  Sum_probs=25.3

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeec
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGT   29 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~   29 (85)
                      |.+|++++.|+.++.+|..+++.+-++..
T Consensus       488 gglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         488 GNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            45788899999999999999999887765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.70  E-value=0.061  Score=29.65  Aligned_cols=46  Identities=11%  Similarity=0.063  Sum_probs=32.4

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   46 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (85)
                      |.++++++.|+.++.+|.++++.+-+..........-+.+..+|+.
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence            4578889999999999999999998776533222223444447754

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.67  E-value=0.062  Score=29.81  Aligned_cols=46  Identities=9%  Similarity=0.058  Sum_probs=31.9

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   46 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (85)
                      |.+++.+..|+.++.+|..+++.+-++.......-.-+.+.-+|+.
T Consensus       484 gglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            4678889999999999999999998776532222222333346754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.33  E-value=0.084  Score=28.99  Aligned_cols=46  Identities=9%  Similarity=0.066  Sum_probs=31.5

Q ss_pred             CceeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCE
Q psy7058           1 MGLLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKF   46 (85)
Q Consensus         1 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   46 (85)
                      |.++++++.|+.++.+|..+++.+-+........-.-+.+..+|+.
T Consensus       469 gglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         469 GNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4577889999999999999999988776532211122333346753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.19  E-value=0.12  Score=25.14  Aligned_cols=30  Identities=10%  Similarity=0.025  Sum_probs=23.9

Q ss_pred             EEEEEecCCCCEEEEEcCCCeEEEEEcCCc
Q psy7058          35 VWDAAFTLDSKFLLTASSDGVARLWNIETG   64 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   64 (85)
                      ...+.+.+++..+++...++.|..++....
T Consensus       142 p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_         142 PDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             cceeeecCCCCEeeeccccccccccccccc
Confidence            467888999988888788888988887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.22  E-value=0.12  Score=24.86  Aligned_cols=44  Identities=9%  Similarity=0.086  Sum_probs=26.9

Q ss_pred             ecCC--CCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEeCC
Q psy7058          40 FTLD--SKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFCDF   85 (85)
Q Consensus        40 ~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   85 (85)
                      ++|+  |+.++.. .++.|.+.|+..++.. .+-.+.......+|||.
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPD   51 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPD   51 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCCEE-EEECSSSEEEEEEECTT
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCCEE-EEecCCCcccCEEECCC
Confidence            4566  7776654 3456777788766543 34334555666777763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.16  E-value=0.32  Score=24.25  Aligned_cols=50  Identities=14%  Similarity=0.114  Sum_probs=36.9

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCccccccccccccceeEEEEe
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLWNIETGEVDKEYSGHQKAITSLAFC   83 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~   83 (85)
                      ...-.+++..+|.+.++.-..+.|..|+. +++.+..+......+++++|-
T Consensus       199 g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         199 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             ccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence            44677888889988777667788999994 677777666545567777773

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=92.10  E-value=0.37  Score=24.76  Aligned_cols=65  Identities=6%  Similarity=-0.032  Sum_probs=39.6

Q ss_pred             CceeEEeeC-CCcEEEeeCCC-ceee--eeeec-cCCCcEEEEEecCCCCEEEE-EcCCCeEEEEEcCCcc
Q psy7058           1 MGLLATTSA-DQTARIWNTED-FSLV--RELGT-ANQRWVWDAAFTLDSKFLLT-ASSDGVARLWNIETGE   65 (85)
Q Consensus         1 g~~l~~~~~-~~~i~~~d~~~-~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~   65 (85)
                      |+++++++. ...|.+|+... +...  ..... ........+.++|+++++.. ...++.|.+|++....
T Consensus       156 G~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            455665554 34677776543 2221  12221 12345788999999998755 4467899999986543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.29  E-value=0.7  Score=24.68  Aligned_cols=51  Identities=22%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             cEEEEEecCCCCEEEEEcCCCeEEEEEcCCcccc--ccc------cccccceeEEEEeC
Q psy7058          34 WVWDAAFTLDSKFLLTASSDGVARLWNIETGEVD--KEY------SGHQKAITSLAFCD   84 (85)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~------~~~~~~v~~~~~~~   84 (85)
                      .-+.++|.|+++++++--..|.|++++..++...  ..+      ...+.....++|+|
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            4679999999999888766789999887665321  111      12234566777766

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.20  E-value=0.71  Score=23.19  Aligned_cols=33  Identities=21%  Similarity=0.107  Sum_probs=21.9

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEEEcCCcc
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLWNIETGE   65 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (85)
                      ..+..+.|.++|++.++-..++.|..++.....
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~   72 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE   72 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCe
Confidence            345677888888766665567777777765443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.01  E-value=0.88  Score=22.83  Aligned_cols=47  Identities=9%  Similarity=-0.002  Sum_probs=25.3

Q ss_pred             eEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEc
Q psy7058           4 LATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTAS   51 (85)
Q Consensus         4 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   51 (85)
                      +++-..++.|+-|+..+.+....... .......++++++|.++++..
T Consensus        54 y~~D~~~g~I~ri~p~g~~~~~~~~~-~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          54 FLLDVFEGNIFKINPETKEIKRPFVS-HKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             EEEETTTCEEEEECTTTCCEEEEEEC-SSSSEEEEEECTTSCEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEeC-CCCCeeEEEECCCCCEEEEec
Confidence            33333444555555443333222222 334467899999998877653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=87.93  E-value=0.92  Score=22.96  Aligned_cols=63  Identities=11%  Similarity=0.111  Sum_probs=36.5

Q ss_pred             ceeEEeeCC-CcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCC------CeEEEEEcCCc
Q psy7058           2 GLLATTSAD-QTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSD------GVARLWNIETG   64 (85)
Q Consensus         2 ~~l~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~   64 (85)
                      ..++.|+.+ ..+.+||..+..-...-.......-......++++.++.++..      ..+.+||..+.
T Consensus        88 ~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          88 QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            445555544 4688888776543322111111222355667789988887643      35888988654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=85.86  E-value=1.3  Score=22.65  Aligned_cols=52  Identities=8%  Similarity=-0.047  Sum_probs=32.1

Q ss_pred             CcEEEEEecCCCCEEEEEcC-CCeEEEEEcCCcccc---cccc--ccccceeEEEEeC
Q psy7058          33 RWVWDAAFTLDSKFLLTASS-DGVARLWNIETGEVD---KEYS--GHQKAITSLAFCD   84 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~---~~~~--~~~~~v~~~~~~~   84 (85)
                      ..+..+.++|+|++++.++. ...|.+|+......+   ....  ......+.+.|+|
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p  202 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC
Confidence            34789999999998887754 457888876432211   1111  1234566677765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.58  E-value=1.3  Score=22.38  Aligned_cols=52  Identities=10%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             EEEeeCCCceeee--eeeccCCCcEEEEEecCCCCEEEEEcCC-CeEEEEEcCCc
Q psy7058          13 ARIWNTEDFSLVR--ELGTANQRWVWDAAFTLDSKFLLTASSD-GVARLWNIETG   64 (85)
Q Consensus        13 i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~   64 (85)
                      +.+||..+++-..  .....+........+.+++.+++.|+.+ ..+.+||..+.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence            5578877654322  1122122223355677899998888655 57899998654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.73  E-value=1.6  Score=22.59  Aligned_cols=54  Identities=6%  Similarity=-0.018  Sum_probs=36.0

Q ss_pred             eeEEeeCCCcEEEeeCCCceeeeeeeccCCCcEEEEEecCCCCEEEEEcCCCeEE
Q psy7058           3 LLATTSADQTARIWNTEDFSLVRELGTANQRWVWDAAFTLDSKFLLTASSDGVAR   57 (85)
Q Consensus         3 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   57 (85)
                      .+..-..-|.+++||+.++.++..-+- ...++...+-..+..-++....+|.+.
T Consensus       269 iiyviTK~G~i~lyDleTgt~i~~nRI-s~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         269 VVFLITKYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEecCcEEEEEEcccccEEEEeec-CCCceEEeccCCCCceEEEECCCCeEE
Confidence            345566779999999999999887776 444455444444444555555666554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.94  E-value=1.8  Score=22.69  Aligned_cols=33  Identities=12%  Similarity=0.164  Sum_probs=24.1

Q ss_pred             EEEEEecCCCCEEEEE-cC----CCeEEEEEcCCcccc
Q psy7058          35 VWDAAFTLDSKFLLTA-SS----DGVARLWNIETGEVD   67 (85)
Q Consensus        35 ~~~~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~   67 (85)
                      +...+++|++++++.+ +.    ...++++|+.+++.+
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~  164 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL  164 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceec
Confidence            4567889999987743 22    347999999988754

>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Thioesterase/thiol ester dehydrase-isomerase
superfamily: Thioesterase/thiol ester dehydrase-isomerase
family: Acyl-CoA thioesterase
domain: Thioesterase II (TesB)
species: Escherichia coli [TaxId: 562]

Probab=83.23  E-value=0.54  Score=21.51  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             CcEEEEEecCCCCEEEEEcCCCeEEEE
Q psy7058          33 RWVWDAAFTLDSKFLLTASSDGVARLW   59 (85)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~i~~~   59 (85)
                      +.+..--|+.+|.+++++.+.+.+|+.
T Consensus       144 gl~~g~i~~~dG~LvAs~~QEgl~R~~  170 (171)
T d1c8ua2         144 GFVRGEFYTQDGVLVASTVQEGVMRNH  170 (171)
T ss_dssp             EEEEEEEEETTCCEEEEEEEEEEEEEC
T ss_pred             eEEEEEEECCCCCEEEEEEEEEEEEec
Confidence            345556688899999998888888764