Psyllid ID: psy7070

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKTTGSYTLLTPGKKNTF
Secondary Structure (PSIPRED)
cccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccHHccc
Coil and Loop (DISEMBL)
MEEDEEKKKKKKKKKKKKKKKkkkkkkknrvciGAWLYVFCltlpplfgwscyipegfmtsCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHgkemsnlkttgsytlltpgkkntf
Flexible Loop (DISEMBL)
meedeekkkkkkkkkkkkkkkkkkkkkknrvcigawLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHGkemsnlkttgsytlltpgkkntf
Low Complexity Region (SEG)
MEEDEEkkkkkkkkkkkkkkkkkkkkkkNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKTTGSYTLLTPGKKNTF
Disordered region (IsUnstruct)
******************************VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNL*****************
Disordered Region (DISOPRED)
***DEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVL**************************
Disordered Region (DISEMBL)
*****************************RVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKTTGSYTLLTPGKKNTF
Disordered Region (DISPRO)
*****EKKKKK***KKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEM********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKTTGSYTLLTPGKKNTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q5YKK9	487	Melanopsin OS=Felis catus	N/A	N/A	0.692	0.184	0.477	2e-23
Q6XL69	500	Melanopsin OS=Rutilus rut	N/A	N/A	0.684	0.178	0.471	6e-21
Q1JPS6	500	Melanopsin-like OS=Danio	yes	N/A	0.684	0.178	0.460	1e-20
O57422	534	Melanopsin-B OS=Xenopus l	N/A	N/A	0.815	0.198	0.358	7e-20
Q5XXP2	469	Melanopsin OS=Phodopus su	N/A	N/A	0.646	0.179	0.452	7e-20
Q2KNE5	593	Melanopsin-A OS=Danio rer	no	N/A	0.607	0.133	0.468	1e-19
Q804Q2	615	Melanopsin-B OS=Gadus mor	N/A	N/A	0.653	0.138	0.435	1e-18
Q4U4D2	475	Melanopsin OS=Podarcis si	N/A	N/A	0.715	0.195	0.406	3e-18
Q804X9	561	Melanopsin-A OS=Gadus mor	N/A	N/A	0.715	0.165	0.397	3e-18
O15973	499	Rhodopsin, GQ-coupled OS=	N/A	N/A	0.661	0.172	0.395	4e-18

>sp|Q5YKK9|OPN4_FELCA Melanopsin OS=Felis catus GN=OPN4 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 57/90 (63%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           K++   V +G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F 
Sbjct: 179 KRRAALVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFV 238

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNLK 114
           F LP+ VI YCY+FI   +   G+ +   +
Sbjct: 239 FFLPLLVIVYCYIFIFRAIRETGQALQTFR 268

Photoreceptor required for regulation of circadian rhythm. Contributes to pupillar reflex and other non-image forming responses to light. May be able to isomerize covalently bound all-trans retinal back to 11-cis retinal.
Felis catus (taxid: 9685)

>sp|Q6XL69|OPN4_RUTRU Melanopsin OS=Rutilus rutilus GN=opn4 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 55/89 (61%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           ++K   V    WLY    +LPP FGWS Y+PEG  TSCSWDYM+ T S RA+ + L +F 
Sbjct: 178 RRKAGAVLAVVWLYSLGWSLPPFFGWSAYVPEGLQTSCSWDYMTFTPSVRAYTILLFIFV 237

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNL 113
           F +P+ +I  CYV I   + A GKE+  L
Sbjct: 238 FFIPLGIIVSCYVGIFQAIRAMGKEIREL 266

Photoreceptor implicated in non-image-forming responses to light.

Rutilus rutilus (taxid: 48668)

>sp|Q1JPS6|OPN4L_DANRE Melanopsin-like OS=Danio rerio GN=opn4l PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 55/89 (61%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           ++K   V +  WLY    +LPP FGWS Y+PEG  TSCSWDYM+ T S RA+ + L +F 
Sbjct: 178 RRKAGAVLVVVWLYSLGWSLPPFFGWSAYVPEGLQTSCSWDYMTFTPSVRAYTILLFVFV 237

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNL 113
           F +P+ +I  CY  I   + A GKE+  L
Sbjct: 238 FFIPLGIIGSCYFAIFQTIRAAGKEIREL 266

Photoreceptor implicated in non-image-forming responses to light.

Danio rerio (taxid: 7955)

>sp|O57422|OPN4B_XENLA Melanopsin-B OS=Xenopus laevis GN=opn4b PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 66/106 (62%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           KK+ +++ +  W+Y    +L PL GWS Y+PEG   SC+WDY++ TMSNR++ + L    
Sbjct: 141 KKRTSQIIVLVWMYSLMWSLAPLLGWSSYVPEGLRISCTWDYVTSTMSNRSYTMMLCCCV 200

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNLKTTGSYTLLTPGKKNTF 130
           F +P+ VI++CY+F+   + + G+ +  L + G  + L+   KN +
Sbjct: 201 FFIPLIVISHCYLFMFLAIRSTGRNVQKLGSYGRQSFLSQSMKNEW 246

Photoreceptor implicated in non-image-forming responses to light. May be able to isomerize covalently bound all-trans retinal back to 11-cis retinal.

Xenopus laevis (taxid: 8355)

>sp|Q5XXP2|OPN4_PHOSU Melanopsin OS=Phodopus sungorus GN=OPN4 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 53/84 (63%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           K++   V +G WLY    +LPP FGWS Y+PEG +TSCSWDY++ T   RA+ + L  F 
Sbjct: 183 KRRTALVLLGIWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYVTFTPQVRAYTMLLFCFV 242

Query: 85  FILPVAVITYCYVFILHVVLAHGK 108
           F LP+ VI +CY+ I   +   G+
Sbjct: 243 FFLPLLVIIFCYISIFRAIRETGR 266

Photoreceptor required for regulation of circadian rhythm. Contributes to pupillar reflex and other non-image forming responses to light. May be able to isomerize covalently bound all-trans retinal back to 11-cis retinal.

Phodopus sungorus (taxid: 10044)

>sp|Q2KNE5|OPN4A_DANRE Melanopsin-A OS=Danio rerio GN=opn4a PE=2 SV=3

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 53/79 (67%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           +K+   + + AW+Y    +LPP FGWS Y+PEG +TSC+WDYM+ T S RA+ + L +F 
Sbjct: 189 QKRALLILLVAWVYSLGWSLPPFFGWSAYVPEGLLTSCTWDYMTFTPSVRAYTMLLFIFV 248

Query: 85  FILPVAVITYCYVFILHVV 103
           F +P+ VI YCY FI   +
Sbjct: 249 FFIPLIVIIYCYFFIFRSI 267

Photoreceptor implicated in non-image-forming responses to light. May be able to isomerize covalently bound all-trans retinal back to 11-cis retinal.

Danio rerio (taxid: 7955)

>sp|Q804Q2|OPN4B_GADMO Melanopsin-B OS=Gadus morhua GN=opn4b PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 55/85 (64%)

Query: 31  VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
           V +  WLY    +L PL GWS YIPEG MTSC+WDY++ T +N+ + L L  F F +P+ 
Sbjct: 138 VILLVWLYSLAWSLAPLLGWSSYIPEGLMTSCTWDYVTSTPANKGYTLMLCCFVFFIPLG 197

Query: 91  VITYCYVFILHVVLAHGKEMSNLKT 115
           +I+YCY+ +   + + G+E+  L T
Sbjct: 198 IISYCYLCMFLAIRSAGREIERLGT 222

Photoreceptor implicated in non-image-forming responses to light.

Gadus morhua (taxid: 8049)

>sp|Q4U4D2|OPN4_PODSI Melanopsin OS=Podarcis sicula GN=OPN4 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 3/96 (3%)

Query: 24  KKKKKNRVCI---GAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYL 80
           K+  K R CI     WLY    ++ PLFGWS YIPEG M SC+WDY+S + +NR++ + L
Sbjct: 126 KRSSKKRSCIIIAFVWLYSLGWSVCPLFGWSSYIPEGLMISCTWDYVSYSPANRSYTMML 185

Query: 81  LMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKTT 116
             F F +P+ +I +CY+F+   + + G+ +  L +T
Sbjct: 186 CCFVFFIPLIIIFHCYLFMFLAIRSTGRNVQKLGST 221

Photoreceptor implicated in non-image-forming responses to light. May be able to isomerize covalently bound all-trans retinal back to 11-cis retinal.

Podarcis sicula (taxid: 65484)

>sp|Q804X9|OPN4A_GADMO Melanopsin-A OS=Gadus morhua GN=opn4a PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 57/93 (61%)

Query: 21  KKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYL 80
           K   K++     +  WLY    +L PL GWS YIPEG  TSC+WDY++ T SNR++ + L
Sbjct: 140 KWNSKRRTTIAILLVWLYSLAWSLAPLVGWSSYIPEGLRTSCTWDYVTYTASNRSYTMML 199

Query: 81  LMFGFILPVAVITYCYVFILHVVLAHGKEMSNL 113
             F F +P+A+I+YCY+F+   +    +++  L
Sbjct: 200 CCFVFFIPLAIISYCYLFMFLAIRKTSRDVERL 232

Photoreceptor implicated in non-image-forming responses to light.

Gadus morhua (taxid: 8049)

>sp|O15973|OPSD1_MIZYE Rhodopsin, GQ-coupled OS=Mizuhopecten yessoensis GN=SCOP1 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 57/86 (66%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           ++K + + +  W+    L++PP FGW  YIPEGF TSC++DY+++T   R + + L +FG
Sbjct: 166 RRKVHLMIVIVWVLSILLSIPPFFGWGAYIPEGFQTSCTFDYLTKTARTRTYIVVLYLFG 225

Query: 85  FILPVAVITYCYVFILHVVLAHGKEM 110
           F++P+ +I  CYV I+  V  H ++M
Sbjct: 226 FLIPLIIIGVCYVLIIRGVRRHDQKM 251

Visual pigments such as rhodopsin and porphyropsin are light-absorbing molecules that mediate vision. Rhodopsin consists of an apoprotein, opsin, covalently linked to 11-cis-retinal. This receptor is coupled to the activation of phospholipase C. Porphyropsin consists of opsin covalently linked to 11-cis 3,4-didehydroretinal.

Mizuhopecten yessoensis (taxid: 6573)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
328721502	492	PREDICTED: rhodopsin, GQ-coupled-like is	0.738	0.195	0.541	7e-28
321472649	527	arthropsin2 [Daphnia pulex]	0.746	0.184	0.479	2e-24
321472650	733	arthropsin3 [Daphnia pulex]	0.669	0.118	0.477	3e-22
345799026	535	PREDICTED: melanopsin [Canis lupus famil	0.692	0.168	0.488	8e-22
57163861	487	melanopsin [Felis catus] gi|75071148|sp|	0.692	0.184	0.477	1e-21
301759159	470	PREDICTED: melanopsin-like isoform 1 [Ai	0.692	0.191	0.488	5e-21
301759161	481	PREDICTED: melanopsin-like isoform 2 [Ai	0.692	0.187	0.488	5e-21
281340541	429	hypothetical protein PANDA_003409 [Ailur	0.692	0.209	0.488	5e-21
291404089	494	PREDICTED: opsin 4-like [Oryctolagus cun	0.646	0.170	0.5	8e-21
338717263	478	PREDICTED: melanopsin-like isoform 2 [Eq	0.661	0.179	0.505	1e-20

>gi|328721502|ref|XP_003247319.1| PREDICTED: rhodopsin, GQ-coupled-like isoform 1 [Acyrthosiphon pisum] gi|328721504|ref|XP_003247320.1| PREDICTED: rhodopsin, GQ-coupled-like isoform 2 [Acyrthosiphon pisum] gi|328721506|ref|XP_003247321.1| PREDICTED: rhodopsin, GQ-coupled-like isoform 3 [Acyrthosiphon pisum]

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/96 (54%), Positives = 71/96 (73%)

Query: 22  KKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLL 81
           K  ++   +VC   W+Y   +TLPP+FGWS Y+ EGF TSCSWDY +RT+SNR FY+Y+L
Sbjct: 146 KLTRQGATKVCAFVWIYCLSITLPPIFGWSKYVLEGFETSCSWDYTTRTVSNRLFYIYML 205

Query: 82  MFGFILPVAVITYCYVFILHVVLAHGKEMSNLKTTG 117
           + GFILPV++ITYCY+FI+  +L H KEM++  T  
Sbjct: 206 VLGFILPVSIITYCYIFIIVSILDHNKEMADCNTNA 241

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321472649|gb|EFX83618.1| arthropsin2 [Daphnia pulex]

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)

Query: 20  KKKKKKKKKNRVCIGAWLYVFCLTLPPL-FGWSCYIPEGFMTSCSWDYMSRTMSNRAFYL 78
           K +  +++  R C+  W++   L  PPL FGWS Y+PEG + +CSWDY SRT SNR +Y 
Sbjct: 166 KWRITRRQAQRACVAIWIHCAALVSPPLLFGWSTYLPEGVLVTCSWDYTSRTTSNRLYYF 225

Query: 79  YLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKTT 116
           YLL FGF+LPV+V+T+CYV I   ++   +EM+ L  T
Sbjct: 226 YLLFFGFVLPVSVLTFCYVAIFRFIVRSSREMTRLIMT 263

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321472650|gb|EFX83619.1| arthropsin3 [Daphnia pulex]

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/88 (47%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 27  KKNRVCIGAWLYVFCLTLPP-LFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGF 85
           +  + C+  WL+   L  PP + GWS Y PEG + +CSWDY +RT+SNR +Y+YLL FGF
Sbjct: 187 QAQKACVAIWLHCAALVAPPWMLGWSSYEPEGVLVTCSWDYTTRTLSNRLYYIYLLFFGF 246

Query: 86  ILPVAVITYCYVFILHVVLAHGKEMSNL 113
           +LPV+V+TYCY  I   ++   +EM+ L
Sbjct: 247 VLPVSVLTYCYAAIFRFIVRSSREMTRL 274

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345799026|ref|XP_853735.2| PREDICTED: melanopsin [Canis lupus familiaris]

 Score =  108 bits (269), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 57/90 (63%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           K++   V +G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F 
Sbjct: 179 KRRAALVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFV 238

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNLK 114
           F LP+ VI YCYVFI   +   G+ +   +
Sbjct: 239 FFLPLLVIVYCYVFIFRAIRETGQALQTFR 268

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57163861|ref|NP_001009325.1| melanopsin [Felis catus] gi|75071148|sp|Q5YKK9.1|OPN4_FELCA RecName: Full=Melanopsin; AltName: Full=Opsin-4 gi|52698314|gb|AAR36861.1| melanopsin [Felis catus]

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 57/90 (63%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           K++   V +G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F 
Sbjct: 179 KRRAALVLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFV 238

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNLK 114
           F LP+ VI YCY+FI   +   G+ +   +
Sbjct: 239 FFLPLLVIVYCYIFIFRAIRETGQALQTFR 268

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301759159|ref|XP_002915423.1| PREDICTED: melanopsin-like isoform 1 [Ailuropoda melanoleuca]

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 56/90 (62%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           K++   V  G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F 
Sbjct: 176 KRRAALVLAGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFV 235

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNLK 114
           F LP+ VI YCYVFI   +   G+ +   +
Sbjct: 236 FFLPLLVIIYCYVFIFKAIRETGQALQTFR 265

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301759161|ref|XP_002915424.1| PREDICTED: melanopsin-like isoform 2 [Ailuropoda melanoleuca]

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 56/90 (62%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           K++   V  G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F 
Sbjct: 187 KRRAALVLAGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFV 246

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNLK 114
           F LP+ VI YCYVFI   +   G+ +   +
Sbjct: 247 FFLPLLVIIYCYVFIFKAIRETGQALQTFR 276

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281340541|gb|EFB16125.1| hypothetical protein PANDA_003409 [Ailuropoda melanoleuca]

 Score =  105 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 56/90 (62%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           K++   V  G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F 
Sbjct: 144 KRRAALVLAGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFV 203

Query: 85  FILPVAVITYCYVFILHVVLAHGKEMSNLK 114
           F LP+ VI YCYVFI   +   G+ +   +
Sbjct: 204 FFLPLLVIIYCYVFIFKAIRETGQALQTFR 233

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291404089|ref|XP_002718402.1| PREDICTED: opsin 4-like [Oryctolagus cuniculus]

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 56/84 (66%)

Query: 25  KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
           KK+   V +G WLY    +LPPLFGWS Y+PEG +TSCSWDY++ T S R++ + L  F 
Sbjct: 207 KKRAGLVLLGVWLYALAWSLPPLFGWSAYVPEGLLTSCSWDYVTFTPSVRSYTMLLFCFV 266

Query: 85  FILPVAVITYCYVFILHVVLAHGK 108
           F LP+ VI YCY+FI   +   G+
Sbjct: 267 FFLPLLVIVYCYIFIFRAIRETGR 290

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|338717263|ref|XP_001501116.3| PREDICTED: melanopsin-like isoform 2 [Equus caballus]

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 31  VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
           V +G WLY    +LPP FGWS Y+PEG +TSCSWDYM+ T S RA+ + L+ F F LP+ 
Sbjct: 190 VLLGIWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMTFTPSVRAYTMLLMCFVFFLPLL 249

Query: 91  VITYCYVFILHVVLAHGKEMSNLKTTGSY 119
           VI YCYVFI   +   G+    L+T G++
Sbjct: 250 VIVYCYVFIFRAIRETGRA---LQTFGAW 275

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
UNIPROTKB|E2R3W5	481	OPN4 "Uncharacterized protein"	0.646	0.174	0.511	1e-20
UNIPROTKB|Q5YKK9	487	OPN4 "Melanopsin" [Felis catus	0.646	0.172	0.5	1.4e-20
UNIPROTKB|E1BEK2	478	OPN4 "Uncharacterized protein"	0.653	0.177	0.482	5.8e-20
UNIPROTKB|Q9UHM6	478	OPN4 "Melanopsin" [Homo sapien	0.615	0.167	0.5	7.5e-20
UNIPROTKB|C9JWU6	495	OPN4 "Melanopsin" [Homo sapien	0.615	0.161	0.5	8.3e-20
UNIPROTKB|F1SEN9	358	OPN4 "Uncharacterized protein"	0.615	0.223	0.487	5.6e-19
MGI|MGI:1353425	521	Opn4 "opsin 4 (melanopsin)" [M	0.6	0.149	0.487	7.2e-19
RGD|621701	474	Opn4 "opsin 4" [Rattus norvegi	0.6	0.164	0.474	2.5e-18
UNIPROTKB|F1NEY8	528	OPN4 "Uncharacterized protein"	0.615	0.151	0.475	9.1e-18
ZFIN|ZDB-GENE-030314-2	500	opn4.1 "opsin 4.1" [Danio reri	0.638	0.166	0.481	1e-17

UNIPROTKB|E2R3W5 OPN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 250 (93.1 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F F LP+ 
Sbjct:   185 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFVFFLPLL 244

Query:    91 VITYCYVFILHVVLAHGKEMSNLK 114
             VI YCYVFI   +   G+ +   +
Sbjct:   245 VIVYCYVFIFRAIRETGQALQTFR 268

GO:0042752 "regulation of circadian rhythm" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

UNIPROTKB|Q5YKK9 OPN4 "Melanopsin" [Felis catus (taxid:9685)]

 Score = 249 (92.7 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 42/84 (50%), Positives = 54/84 (64%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T S RA+ + L  F F LP+ 
Sbjct:   185 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPSVRAYTMLLFCFVFFLPLL 244

Query:    91 VITYCYVFILHVVLAHGKEMSNLK 114
             VI YCY+FI   +   G+ +   +
Sbjct:   245 VIVYCYIFIFRAIRETGQALQTFR 268

GO:0005502 "11-cis retinal binding" evidence=ISS

GO:0007602 "phototransduction" evidence=ISS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS

GO:0009584 "detection of visible light" evidence=ISS

GO:0016021 "integral to membrane" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=ISS

UNIPROTKB|E1BEK2 OPN4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 243 (90.6 bits), Expect = 5.8e-20, P = 5.8e-20
 Identities = 41/85 (48%), Positives = 54/85 (63%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDY+S T S RA+ + L  F F LP+ 
Sbjct:   190 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYVSFTPSVRAYTMLLFCFVFFLPLL 249

Query:    91 VITYCYVFILHVVLAHGKEMSNLKT 115
             +I YCY+FI   +   G+ +    T
Sbjct:   250 IIIYCYIFIFKAIRETGQALQTFGT 274

GO:0042752 "regulation of circadian rhythm" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

UNIPROTKB|Q9UHM6 OPN4 "Melanopsin" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 7.5e-20, P = 7.5e-20
 Identities = 40/80 (50%), Positives = 53/80 (66%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T + RA+ + L  F F LP+ 
Sbjct:   190 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLL 249

Query:    91 VITYCYVFILHVVLAHGKEM 110
             +I YCY+FI   +   G+ +
Sbjct:   250 IIIYCYIFIFRAIRETGRAL 269

GO:0007601 "visual perception" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0048511 "rhythmic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0007602 "phototransduction" evidence=IDA

GO:0005502 "11-cis retinal binding" evidence=IDA

GO:0042752 "regulation of circadian rhythm" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0009584 "detection of visible light" evidence=IDA

UNIPROTKB|C9JWU6 OPN4 "Melanopsin" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 8.3e-20, P = 8.3e-20
 Identities = 40/80 (50%), Positives = 53/80 (66%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDYMS T + RA+ + L  F F LP+ 
Sbjct:   201 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMSFTPAVRAYTMLLCCFVFFLPLL 260

Query:    91 VITYCYVFILHVVLAHGKEM 110
             +I YCY+FI   +   G+ +
Sbjct:   261 IIIYCYIFIFRAIRETGRAL 280

GO:0007601 "visual perception" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

UNIPROTKB|F1SEN9 OPN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 5.6e-19, P = 5.6e-19
 Identities = 39/80 (48%), Positives = 52/80 (65%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDY+S T   RA+ + L  F F+LP+ 
Sbjct:   190 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYVSFTPKVRAYTMLLFCFVFLLPLL 249

Query:    91 VITYCYVFILHVVLAHGKEM 110
             VI Y Y+FI   +   G+ +
Sbjct:   250 VIIYSYIFIFKAIRETGQAL 269

GO:0042752 "regulation of circadian rhythm" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

MGI|MGI:1353425 Opn4 "opsin 4 (melanopsin)" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 7.2e-19, P = 7.2e-19
 Identities = 38/78 (48%), Positives = 51/78 (65%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDYM+ T   RA+ + L  F F LP+ 
Sbjct:   189 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYMTFTPQVRAYTMLLFCFVFFLPLL 248

Query:    91 VITYCYVFILHVVLAHGK 108
             +I +CY+FI   +   G+
Sbjct:   249 IIIFCYIFIFRAIRETGR 266

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=ISO;IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISO;IDA;IMP

GO:0009584 "detection of visible light" evidence=ISO;IMP

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=TAS

GO:0016056 "rhodopsin mediated signaling pathway" evidence=IDA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0048511 "rhythmic process" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

RGD|621701 Opn4 "opsin 4" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 37/78 (47%), Positives = 51/78 (65%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +G WLY    +LPP FGWS Y+PEG +TSCSWDY++ T   RA+ + L  F F LP+ 
Sbjct:   190 VLLGVWLYALAWSLPPFFGWSAYVPEGLLTSCSWDYVTFTPLVRAYTMLLFCFVFFLPLL 249

Query:    91 VITYCYVFILHVVLAHGK 108
             +I +CY+FI   +   G+
Sbjct:   250 IIIFCYIFIFRAIRETGR 267

GO:0005502 "11-cis retinal binding" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=ISO;IDA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISO;IDA

GO:0009584 "detection of visible light" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0016056 "rhodopsin mediated signaling pathway" evidence=ISO

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=ISO;ISS

GO:0048511 "rhythmic process" evidence=IEA

UNIPROTKB|F1NEY8 OPN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 9.1e-18, P = 9.1e-18
 Identities = 38/80 (47%), Positives = 50/80 (62%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             + +G WLY    +LPP FGWS Y+PEG +TSCSWDYM+ T S RA+ + L  F F +P+ 
Sbjct:   150 ILVGVWLYSLAWSLPPFFGWSAYVPEGLLTSCSWDYMTFTPSVRAYTMLLFCFVFFIPLI 209

Query:    91 VITYCYVFILHVVLAHGKEM 110
              I Y YVFI   +    K +
Sbjct:   210 AIIYSYVFIFEAIKKANKSV 229

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IEA

ZFIN|ZDB-GENE-030314-2 opn4.1 "opsin 4.1" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 40/83 (48%), Positives = 52/83 (62%)

Query:    31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
             V +  WLY    +LPP FGWS Y+PEG  TSCSWDYM+ T S RA+ + L +F F +P+ 
Sbjct:   184 VLVVVWLYSLGWSLPPFFGWSAYVPEGLQTSCSWDYMTFTPSVRAYTILLFVFVFFIPLG 243

Query:    91 VITYCYVFILHVVLAHGKEMSNL 113
             +I  CY  I   + A GKE+  L
Sbjct:   244 IIGSCYFAIFQTIRAAGKEIREL 266

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA;IDA

GO:0008377 "light-induced release of internally sequestered calcium ion" evidence=IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UHM6	OPN4_HUMAN	No assigned EC number	0.5230	0.5	0.1359	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	130
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	5e-17
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	5e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	3e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	4e-05
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	4e-05
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	4e-05
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	5e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	6e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	2e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	2e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	2e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	4e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	4e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	5e-04
pfam03343	603	pfam03343, SART-1, SART-1 family	6e-04
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	8e-04
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	8e-04
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	8e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.001
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.001
pfam07771	120	pfam07771, TSGP1, Tick salivary peptide group 1	0.001
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.002
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
pfam04086	272	pfam04086, SRP-alpha_N, Signal recognition particl	0.002
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.002
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.002
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.002
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.003
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.003
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.004
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.004
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.004
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.004

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 73.9 bits (182), Expect = 5e-17
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 20  KKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCY-IPEGFMTSCSWDYMSRTMSNRAFYL 78
           ++ +  ++   + +  W+    L+LPPL       + EG +T+C  D+     + R++ L
Sbjct: 87  RRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEE-STKRSYTL 145

Query: 79  YLLMFGFILPVAVITYCYVFILHVVLAHGKEM 110
              + GF+LP+ VI  CY  IL  +    +  
Sbjct: 146 LSTLLGFVLPLLVILVCYTLILRTLRKRARSG 177

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 5   EEKKKKKKKKKKKKKKKKKKKKKKNR 30
           E+K+K+K+K K KK+ +  K   K R
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRR 426

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 5   EEKKKKKKKKKKKKKKKKKKKKKKNR 30
            EKK+K+K+K K KK+ +  K    R
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKR 425

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 7   KKKKKKKKKKKKKKKKKKKKKKN 29
           + +KK+K+K+K K KK+ +  KN
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
           E+ E++K+K K KK+ +  K   K++K
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 5   EEKKKKKKKKKKKKKKKKKKKKKKNR 30
           EEKK +K+KKKKK+KKK KK+KKK R
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRKKKGR 413

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 16/29 (55%), Positives = 24/29 (82%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
           + +E+K +K+KKKKK+KKK KK+KKK  +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 1   MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
            EE   KK+ K++KKK+KKKKKKK KK N+
Sbjct: 79  DEEKTAKKRAKRQKKKQKKKKKKKAKKGNK 108

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 1   MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
             +DEEK  KK+ K++KKK+KKKKKKK  
Sbjct: 76  KRKDEEKTAKKRAKRQKKKQKKKKKKKAK 104

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 1   MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYV 39
           +++ E K  +K +KK +K K K +KKK  +      L+V
Sbjct: 63  LDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLFV 101

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
            E +EK+K+K K KK+ +  K   K++
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRR 426

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 7   KKKKKKKKKKKKKKKKKKKKKKNRV 31
           K+ +KK+K+K+K K KK+ +    +
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNI 422

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
           ++++EK+K K KK+ +  K   K++K +
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPS 429

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 7   KKKKKKKKKKKKKKKKKKKKKKNR 30
           K   K+ +KK+K+K+K K KK++R
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHR 417

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 6   EKKKKKKKKKKKKKKKKKKKKKKNRVCIG 34
              K+ +KK+K+K+K K KK+ ++   IG
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHRDTKNIG 423

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 3   EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
           E E++K K KK+ +  K   K++K    
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 4   DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
           +++  K  KK   K+ +KK+K+K+K +V
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKV 412

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 7   KKKKKKKKKKKKKKKKKKKKKKNR 30
            KK   K+ +KK+K+K+K K K R
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKR 415

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 5   EEKKKKKKKKKKKKKKKKKKKKKKNR 30
           +++K+K+K K KK+ +  K   K+ +
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/24 (58%), Positives = 21/24 (87%)

Query: 7   KKKKKKKKKKKKKKKKKKKKKKNR 30
           KKK+++KK +K+KKKKK+KKK  +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKK 407

Length = 414

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 15/24 (62%), Positives = 21/24 (87%)

Query: 7   KKKKKKKKKKKKKKKKKKKKKKNR 30
           KK+++KK +K+KKKKK+KKK K R
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKR 408

Length = 414

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 3/32 (9%)

Query: 2   EEDEEKKKKKKKK---KKKKKKKKKKKKKKNR 30
            +  EKK KKKK    K++KKKKK+KKKKK R
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
           E+++EK K KK+ +  K   K++K    
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 1   MEEDEEKKKKKKKKKKKKKKKKKKKK 26
            +  E  K KK KKKKKKKKK++K  
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 18/28 (64%), Positives = 25/28 (89%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
           EE+E+K+KKKKK+ KK+KK+KK KK+K 
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKM 177

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 4   DEEKKKKKKKKKKKKKKKKKKKKKKN 29
           D  +  K KK KKKKKKKKK++K  +
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDLD 293

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 3   EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
           +  E  K KK KKKKKKKKK++K    
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDLDE 294

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 14/24 (58%), Positives = 21/24 (87%)

Query: 7   KKKKKKKKKKKKKKKKKKKKKKNR 30
            KKK+++KK +K+KKKKK+KKK +
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGK 406

Length = 414

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 4  DEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYV 39
           +E K   K +KKK+K++ K  K K++      L+V
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR----LFV 94

Length = 330

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 1  MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
           E D  KKKKKKKKKK +      K KK
Sbjct: 18 TEADLVKKKKKKKKKKAEDTAATAKAKK 45

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 3   EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
           E +  K  KK   K+ +KK+K+K+K  
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPK 411

Length = 434

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 1  MEEDEEKKKKKKKKKKKKKKKK-KKKKKKNRV 31
          +++ E K   K +KKK+K++ K  K K K R+
Sbjct: 61 LDKKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92

Length = 330

>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 17/27 (62%), Positives = 17/27 (62%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
            E  EK KKKKKK KK KK KK  KK 
Sbjct: 94  PEPTEKPKKKKKKSKKTKKPKKSSKKD 120

This contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis. Also present are peptides from a related tick species, Ixodes ricinus. They are characterized by a putative signal peptide indicative of secretion and conserved cysteine residues. Length = 120

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/28 (64%), Positives = 24/28 (85%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
           E +EE+KK+KKKKK+ KK+KK+KK KK 
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKE 175

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query: 5   EEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPP 46
           E+K KK KKK+KK+K+K++ K KK  V     L +     P 
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPA 237

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit, N-terminal

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 1   MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
             +         +K  K K   KK  KK R 
Sbjct: 184 AAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214

SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation. Length = 272

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 2  EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
          EEDEEK+++K K   K K KK  K K  
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIE 67

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 1   MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
           ++E  ++KK+KKKKKKKKKKK  KK  K
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAK 132

Length = 135

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
           E+ ++KK+KKKKKKKKKKK  KK  KK 
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKK 134

Length = 135

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 9/29 (31%), Positives = 20/29 (68%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
              E  +K+K+ +K ++KK K+++K+K +
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
           EE  +KKK+ K K  K+  KKKKKK     
Sbjct: 81  EERLKKKKRVKTKAYKEPTKKKKKKDPTAA 110

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 3   EDEEKKKKKKKKKKKKKKKKKKKKKK 28
           + EE+ KKKK+ K K  K+  KKKKK
Sbjct: 79  QREERLKKKKRVKTKAYKEPTKKKKK 104

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 17/29 (58%), Positives = 18/29 (62%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
           + DEEK KKKKKK  K KKK    KK  R
Sbjct: 235 DGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 35.1 bits (81), Expect = 0.004
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
           EE +EKKKKK+ KK+KK+KK KK+K    
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 1   MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
             E + KK KKK+KK+K+K++ K KKK+
Sbjct: 194 AVEKKSKKPKKKEKKEKEKERDKDKKKE 221

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 2  EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
          EE++E+K+++K K   K K KK  K K
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAK 65

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 2   EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
            E+  KKKK+ K K  K+  KKKKKK  
Sbjct: 80  REERLKKKKRVKTKAYKEPTKKKKKKDP 107

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG4220|consensus	503		99.3
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	98.97
PHA03235	409	DNA packaging protein UL33; Provisional	98.85
PHA02834	323	chemokine receptor-like protein; Provisional	98.78
PHA02638	417	CC chemokine receptor-like protein; Provisional	98.76
KOG4219|consensus	423		98.76
PHA03234	338	DNA packaging protein UL33; Provisional	98.75
PHA03087	335	G protein-coupled chemokine receptor-like protein;	98.63
KOG2087|consensus	363		97.6
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	96.2
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	94.38
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	94.27
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	94.05
PF13853	144	7tm_4: Olfactory receptor	88.57
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	87.01
COG3924	80	Predicted membrane protein [Function unknown]	83.8
PF11710	201	Git3: G protein-coupled glucose receptor regulatin	83.74

>KOG4220|consensus

Probab=99.30  E-value=5.6e-12  Score=91.71  Aligned_cols=93  Identities=22%  Similarity=0.351  Sum_probs=72.5

Q ss_pred             HhHHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceee--cCCcccccccccccccchHHHHHHHHHHHHHHHHHH
Q psy7070          14 KKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIP--EGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAV   91 (130)
Q Consensus        14 ~~~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~i   91 (130)
                      .|+..|+..+|.+++.++|++.|++|++++.|.++.|...+.  ....+.|+.++-+..    .+.....++.|-+|.++
T Consensus       133 TrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp----~iTfGTAiAAFYlPVti  208 (503)
T KOG4220|consen  133 TRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNP----AITFGTAIAAFYLPVTI  208 (503)
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCc----eeehhHHHHHHHhhHHH
Confidence            467789999999999999999999999999999888865432  233458987765422    23444555679999999


Q ss_pred             HHHHHHHHHHHHHhccccc
Q psy7070          92 ITYCYVFILHVVLAHGKEM  110 (130)
Q Consensus        92 i~~~y~~I~~~l~~~~~~~  110 (130)
                      |.+.|++|++..+++.+..
T Consensus       209 M~~LY~rIyret~kR~k~~  227 (503)
T KOG4220|consen  209 MTILYWRIYRETRKRQKEL  227 (503)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999999999988765543

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.97  E-value=5.7e-09  Score=71.20  Aligned_cols=94  Identities=24%  Similarity=0.557  Sum_probs=72.0

Q ss_pred             hHHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCC-cccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy7070          15 KKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGF-MTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVIT   93 (130)
Q Consensus        15 ~~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~   93 (130)
                      ++.+|+...+++++..+++++|++++++++|+.++........+ ...|....+...  ...+.....++.+++|+++++
T Consensus        88 ~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~  165 (257)
T PF00001_consen   88 HPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSS--SQIYFIYFFIVFFILPLIIIL  165 (257)
T ss_dssp             SHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSH--HHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccceeeee
Confidence            45677888888999999999999999999999776443332222 457876655422  345667777788999999999


Q ss_pred             HHHHHHHHHHHhccccc
Q psy7070          94 YCYVFILHVVLAHGKEM  110 (130)
Q Consensus        94 ~~y~~I~~~l~~~~~~~  110 (130)
                      ++|..|++.++++.++.
T Consensus       166 ~~~~~i~~~~~~~~~~~  182 (257)
T PF00001_consen  166 ICYIRILRKLRRQRKRI  182 (257)
T ss_dssp             HHHHHHHHHHHHHHHCT
T ss_pred             eeccccccccccccccc
Confidence            99999999998876653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA03235 DNA packaging protein UL33; Provisional

Probab=98.85  E-value=1.6e-08  Score=75.13  Aligned_cols=85  Identities=14%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             cccchhHHHHHHHHHHHHHhhhhhhhhhcc---e--ee-cCCccccccccccccc--chHHHHHHHHHHHHHHHHHHHHH
Q psy7070          23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSC---Y--IP-EGFMTSCSWDYMSRTM--SNRAFYLYLLMFGFILPVAVITY   94 (130)
Q Consensus        23 ~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~---~--~~-~~~~~~C~~~~~~~~~--~~~~~~~~~~~~~f~lPl~ii~~   94 (130)
                      .+++++.++++++|++++++++|+++....   .  .. ..+...|...++.+..  ....|.+..+++.|++|+++|++
T Consensus       143 ~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~  222 (409)
T PHA03235        143 SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTW  222 (409)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357788889999999999999997543211   0  10 1223468654433211  12245566666789999999999


Q ss_pred             HHHHHHHHHHhcc
Q psy7070          95 CYVFILHVVLAHG  107 (130)
Q Consensus        95 ~y~~I~~~l~~~~  107 (130)
                      ||.+|++.++++.
T Consensus       223 ~Y~~I~~~l~~~~  235 (409)
T PHA03235        223 FYTFFYRTLKRAS  235 (409)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998753

>PHA02834 chemokine receptor-like protein; Provisional

Probab=98.78  E-value=4.9e-08  Score=70.42  Aligned_cols=83  Identities=17%  Similarity=0.407  Sum_probs=54.6

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          24 KKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTM-SNRAFYLYLLMFGFILPVAVITYCYVFILHV  102 (130)
Q Consensus        24 t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~f~lPl~ii~~~y~~I~~~  102 (130)
                      +.+++.++++++|+++++.++|+++++.... ..+...|......... +...+.....+..|++|+++|++||.+|++.
T Consensus       137 ~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~  215 (323)
T PHA02834        137 SISLSVLLSVAAWVCSVILSMPAMVLYYVDN-TDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYT  215 (323)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhHHHHHHhcc-CCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888999999999999876543321 2233468533222111 1112333345678999999999999999999


Q ss_pred             HHhcc
Q psy7070         103 VLAHG  107 (130)
Q Consensus       103 l~~~~  107 (130)
                      ++++.
T Consensus       216 l~~~~  220 (323)
T PHA02834        216 LKNCK  220 (323)
T ss_pred             HHhcc
Confidence            98753

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=98.76  E-value=3.9e-08  Score=73.33  Aligned_cols=88  Identities=16%  Similarity=0.334  Sum_probs=58.7

Q ss_pred             hhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcce-------eecC--Cccccccccccccc----chHHHHHHHHHHHH
Q psy7070          19 KKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCY-------IPEG--FMTSCSWDYMSRTM----SNRAFYLYLLMFGF   85 (130)
Q Consensus        19 ~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~-------~~~~--~~~~C~~~~~~~~~----~~~~~~~~~~~~~f   85 (130)
                      ++..++.+.+.++++++|++++++++|+++.....       ..+.  ....|...++....    +...+.+...+++|
T Consensus       203 ~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f  282 (417)
T PHA02638        203 FQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGM  282 (417)
T ss_pred             ccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHH
Confidence            44555667777888999999999999997754322       1111  13478655433211    11223444456679


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q psy7070          86 ILPVAVITYCYVFILHVVLAH  106 (130)
Q Consensus        86 ~lPl~ii~~~y~~I~~~l~~~  106 (130)
                      ++|+++|++||.+|++.+++.
T Consensus       283 ~lPl~vmi~cY~~I~~~L~~~  303 (417)
T PHA02638        283 FIPIIIFAFCYIKIILKLKQL  303 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999764

>KOG4219|consensus

Probab=98.76  E-value=3.4e-09  Score=77.10  Aligned_cols=88  Identities=17%  Similarity=0.282  Sum_probs=64.8

Q ss_pred             hhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeec----CCccccccccccc---cc-c---hHHHHHHHHHHHHHHHH
Q psy7070          21 KKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPE----GFMTSCSWDYMSR---TM-S---NRAFYLYLLMFGFILPV   89 (130)
Q Consensus        21 ~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~----~~~~~C~~~~~~~---~~-~---~~~~~~~~~~~~f~lPl   89 (130)
                      .+.+++.+.++++++|++++++++|.++..+.....    .....|...++..   .. .   ..+|.....++.|++|+
T Consensus       143 ~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPl  222 (423)
T KOG4219|consen  143 PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPL  222 (423)
T ss_pred             cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHH
Confidence            347888899999999999999999987755443221    1234666555442   11 1   12377788888999999


Q ss_pred             HHHHHHHHHHHHHHHhccc
Q psy7070          90 AVITYCYVFILHVVLAHGK  108 (130)
Q Consensus        90 ~ii~~~y~~I~~~l~~~~~  108 (130)
                      +++.++|..|.+.||..+.
T Consensus       223 iVl~~~Yt~iav~LW~~~~  241 (423)
T KOG4219|consen  223 IVLGLAYTVIAVTLWGRRI  241 (423)
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            9999999999999998653

>PHA03234 DNA packaging protein UL33; Provisional

Probab=98.75  E-value=6.1e-08  Score=70.45  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7070          30 RVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNR--AFYLYLLMFGFILPVAVITYCYVFILHVVLAH  106 (130)
Q Consensus        30 ~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~  106 (130)
                      ..++++|+.+++.++|.++........++...|...++.+..+..  .+....++++|++|+++|++||..|.+.++++
T Consensus       149 ~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~  227 (338)
T PHA03234        149 RNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL  227 (338)
T ss_pred             HHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            455667999999999987644322222233579876653221111  11122334468999999999999999998763

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=98.63  E-value=1.8e-07  Score=67.51  Aligned_cols=89  Identities=22%  Similarity=0.368  Sum_probs=62.5

Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          18 KKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTM-SNRAFYLYLLMFGFILPVAVITYCY   96 (130)
Q Consensus        18 ~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~f~lPl~ii~~~y   96 (130)
                      +|+...+.+++..+++++|+++++..+|++..+... .+.+...|...+..... +...+.+....+.+++|+++++++|
T Consensus       145 ~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y  223 (335)
T PHA03087        145 KSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK-KDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCY  223 (335)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHhccHhheeeee-ccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667888899999999999999999987654432 22334578766653221 1222333345567999999999999


Q ss_pred             HHHHHHHHhcc
Q psy7070          97 VFILHVVLAHG  107 (130)
Q Consensus        97 ~~I~~~l~~~~  107 (130)
                      .+|.+.++++.
T Consensus       224 ~~i~~~l~~~~  234 (335)
T PHA03087        224 SKILITLKGIN  234 (335)
T ss_pred             HHHHHHHHhcc
Confidence            99999987754

>KOG2087|consensus

Probab=97.60  E-value=0.00021  Score=51.93  Aligned_cols=85  Identities=24%  Similarity=0.396  Sum_probs=61.8

Q ss_pred             cccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHV  102 (130)
Q Consensus        23 ~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~~~  102 (130)
                      -..+.+..+++..|+.+++.++.|+++.+.+   .....|.+....+.. ..+|.+..++..-.+-+++|.+||.+|+..
T Consensus       143 ~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y---~~~~vClPL~~~~~~-s~g~y~~~~l~~N~lafiiia~~Y~~iy~~  218 (363)
T KOG2087|consen  143 AKLRPLVLILLLGWLFAFLMALLPLFGISSY---GASSVCLPLHIEEPL-STGYYLVALLGLNLLAFIIIAFSYGKIYCS  218 (363)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhccccCCCCC---cccceeeecccCCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence            3455577888899999999999888874433   233589887654332 343666666677888899999999999999


Q ss_pred             HHhcccccc
Q psy7070         103 VLAHGKEMS  111 (130)
Q Consensus       103 l~~~~~~~~  111 (130)
                      +++......
T Consensus       219 l~~~~~~~~  227 (363)
T KOG2087|consen  219 LRKGDLSAT  227 (363)
T ss_pred             eecCCCccc
Confidence            987654433

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=96.20  E-value=0.043  Score=39.53  Aligned_cols=40  Identities=18%  Similarity=0.439  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q psy7070          76 FYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKT  115 (130)
Q Consensus        76 ~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~~~~~~~~~~  115 (130)
                      +.......+.++|+++++.+...+...|++|.++++....
T Consensus       180 ~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~  219 (303)
T PF05296_consen  180 YFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNAT  219 (303)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            3344444789999999999999999999999888876543

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.38  E-value=0.084  Score=37.24  Aligned_cols=32  Identities=22%  Similarity=0.112  Sum_probs=25.4

Q ss_pred             HhhhhhcccchhHHHHHHHHHHHHHhhhhhhh
Q psy7070          17 KKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLF   48 (130)
Q Consensus        17 ~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~   48 (130)
                      .+|+...+.+.+..+++++|++++....+..+
T Consensus       100 ~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~  131 (274)
T PF10328_consen  100 FKYKKIFSFKNTIILIAFIWLLSIIISTILYF  131 (274)
T ss_pred             HHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence            46777888899999999999999876655543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.27  E-value=0.045  Score=38.99  Aligned_cols=85  Identities=11%  Similarity=0.116  Sum_probs=47.6

Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          18 KKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYV   97 (130)
Q Consensus        18 ~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y~   97 (130)
                      ++....++.....++++-|+..++.++|.....+. ..+....  .....+ .. ..............+-.+..++||.
T Consensus       110 ~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~-~f~~~~~--~~~~~d-~~-~~~~~~~~~~~~~~~~cv~~iv~Y~  184 (283)
T PF10323_consen  110 RHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDF-YFDNEEN--MSLFVD-PE-FIQRNFLIAFIFVSVTCVICIVCYG  184 (283)
T ss_pred             HHhhhccccchhheeeeeehhhhhheeeeeccCce-eeecccc--eeeecC-HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556677777788888999999999986543222 1111111  111111 11 1111112222334454667789999


Q ss_pred             HHHHHHHhcc
Q psy7070          98 FILHVVLAHG  107 (130)
Q Consensus        98 ~I~~~l~~~~  107 (130)
                      .++..++++.
T Consensus       185 ~i~~~iRk~~  194 (283)
T PF10323_consen  185 IIFIFIRKRN  194 (283)
T ss_pred             HHHHHHHHhh
Confidence            9999998654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.05  E-value=0.17  Score=36.37  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=55.1

Q ss_pred             hhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeec---CCcccccccccc--cccc-----------h----HHHHHH
Q psy7070          20 KKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPE---GFMTSCSWDYMS--RTMS-----------N----RAFYLY   79 (130)
Q Consensus        20 ~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~---~~~~~C~~~~~~--~~~~-----------~----~~~~~~   79 (130)
                      ....+++.+..++.++++++.++++|..+.....+..   .....|....+.  ...+           .    ..+...
T Consensus       116 ~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~  195 (318)
T PF10324_consen  116 QKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFI  195 (318)
T ss_pred             cccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccccccchhhhhhhhhhHHHHHHHHHHh
Confidence            3456788888888888999988888877654433211   112368521100  0000           0    012222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy7070          80 LLMFGFILPVAVITYCYVFILHVVLAHGKEMSN  112 (130)
Q Consensus        80 ~~~~~f~lPl~ii~~~y~~I~~~l~~~~~~~~~  112 (130)
                      ..++.-++|.+++.++...+...+++..+...+
T Consensus       196 ~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~  228 (318)
T PF10324_consen  196 DGIFFKIIPCILLPILTILLIIELRKAKKRRKK  228 (318)
T ss_pred             hhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence            223336799999999999999999876554433

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF13853 7tm_4: Olfactory receptor

Probab=88.57  E-value=0.019  Score=36.83  Aligned_cols=77  Identities=19%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcceee-c-CCccccccc---ccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          30 RVCIGAWLYVFCLTLPPLFGWSCYIP-E-GFMTSCSWD---YMSRT-MSNRAFYLYLLMFGFILPVAVITYCYVFILHVV  103 (130)
Q Consensus        30 ~~i~~iWi~s~~~~~P~~~~~~~~~~-~-~~~~~C~~~---~~~~~-~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~~~l  103 (130)
                      .+.++.|+.+++..+|.......... + .+..-|...   ..+.+ .....+.........+.|++++++.|..|...+
T Consensus         5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~av   84 (144)
T PF13853_consen    5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAV   84 (144)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehh
Confidence            45566788887776665432111110 1 111122210   11111 112223333444457899999999999999977


Q ss_pred             Hhc
Q psy7070         104 LAH  106 (130)
Q Consensus       104 ~~~  106 (130)
                      .+.
T Consensus        85 lki   87 (144)
T PF13853_consen   85 LKI   87 (144)
T ss_pred             hcc
Confidence            664

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.01  E-value=0.74  Score=32.71  Aligned_cols=92  Identities=14%  Similarity=0.228  Sum_probs=45.0

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhhhh---hcceee---cCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          24 KKKKKNRVCIGAWLYVFCLTLPPLFG---WSCYIP---EGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYV   97 (130)
Q Consensus        24 t~~~~~~~i~~iWi~s~~~~~P~~~~---~~~~~~---~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y~   97 (130)
                      .+++....+...|++-+++.....+.   ..+...   ..+...|........ ....|.... .+.=++.+.+|+..-.
T Consensus        91 ~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~-~~~~~~~~~-~~~D~~fvgLM~~aSg  168 (265)
T PF03402_consen   91 APKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYI-VSSLFATLL-SFRDVLFVGLMIWASG  168 (265)
T ss_pred             cCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchh-hhhhhhhHH-HhhHHHHHHHHHhhhh
Confidence            44555556777898877765533221   111111   112246754332211 111222222 1122344566777777


Q ss_pred             HHHHHHHhcccccccccccC
Q psy7070          98 FILHVVLAHGKEMSNLKTTG  117 (130)
Q Consensus        98 ~I~~~l~~~~~~~~~~~~~~  117 (130)
                      .|...|.+|.++.++..+..
T Consensus       169 yMV~~L~RH~q~VqhIhs~~  188 (265)
T PF03402_consen  169 YMVFLLYRHHQQVQHIHSSS  188 (265)
T ss_pred             hheeeeeecccccccCcCCC
Confidence            77777888877776655443

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>COG3924 Predicted membrane protein [Function unknown]

Probab=83.80  E-value=5.6  Score=22.43  Aligned_cols=20  Identities=25%  Similarity=0.639  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy7070          82 MFGFILPVAVITYCYVFILH  101 (130)
Q Consensus        82 ~~~f~lPl~ii~~~y~~I~~  101 (130)
                      ..++.+|++.+++||+.|-.
T Consensus        48 ~aCi~lPllFi~l~~~mvkf   67 (80)
T COG3924          48 MACILLPLLFIVLCWAMVKF   67 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45688999999999986633

>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=83.74  E-value=5.1  Score=27.18  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy7070          76 FYLYLLMFGFILPVAVITYCYVFILHVVLAHGKE  109 (130)
Q Consensus        76 ~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~~~~  109 (130)
                      +.+...-+--++-.+.+++.|..|+..++++.++
T Consensus       167 ~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~  200 (201)
T PF11710_consen  167 YRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR  200 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            3344433333444677788999999999886543

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		4e-11
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		4e-11
3oax_A	349	Crystal Structure Of Bovine Rhodopsin With Beta-Ion		9e-10
1jfp_A	348	Structure Of Bovine Rhodopsin (Dark Adapted) Length		9e-10
2j4y_A	349	Crystal Structure Of A Rhodopsin Stabilizing Mutant		1e-09
3c9m_A	348	Structure Of A Mutant Bovine Rhodopsin In Hexagonal		1e-09
4a4m_A	349	Crystal Structure Of The Light-Activated Constituti		1e-09
2x72_A	349	Crystal Structure Of The Constitutively Active E113		1e-09

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 33  IGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVI 92
           I  WL+     + P+FGW  Y  EG + +CS+DY+SR  + R+  L + + GF  P+ +I
Sbjct: 156 IFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILII 215
Query: 93  TYCYVFILHVVLAHGKEMSNL 113
            +CY  I+  V  H KEM+ +
Sbjct: 216 FFCYFNIVMSVSNHEKEMAAM 236

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 33  IGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVI 92
           I  WL+     + P+FGW  Y  EG + +CS+DY+SR  + R+  L + + GF  P+ +I
Sbjct: 157 IFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILII 216
Query: 93  TYCYVFILHVVLAHGKEMSNL 113
            +CY  I+  V  H KEM+ +
Sbjct: 217 FFCYFNIVMSVSNHEKEMAAM 237

>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36  WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
           W+       PPL GWS YIPEG   SC  DY +     +N +F +Y+ +  FI+P+ VI 
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94  YCY---VFILHVVLAHGKEMSNLK 114
           +CY   VF +    A  +E +  +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245

>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36  WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
           W+       PPL GWS YIPEG   SC  DY +     +N +F +Y+ +  FI+P+ VI 
Sbjct: 161 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 220
Query: 94  YCY---VFILHVVLAHGKEMSNLK 114
           +CY   VF +    A  +E +  +
Sbjct: 221 FCYGQLVFTVKEAAAQQQESATTQ 244

>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36  WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
           W+       PPL GWS YIPEG   SC  DY +     +N +F +Y+ +  FI+P+ VI 
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94  YCY---VFILHVVLAHGKEMSNLK 114
           +CY   VF +    A  +E +  +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245

>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36  WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
           W+       PPL GWS YIPEG   SC  DY +     +N +F +Y+ +  FI+P+ VI 
Sbjct: 161 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 220
Query: 94  YCY---VFILHVVLAHGKEMSNLK 114
           +CY   VF +    A  +E +  +
Sbjct: 221 FCYGQLVFTVKEAAAQQQESATTQ 244

>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36  WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
           W+       PPL GWS YIPEG   SC  DY +     +N +F +Y+ +  FI+P+ VI 
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94  YCY---VFILHVVLAHGKEMSNLK 114
           +CY   VF +    A  +E +  +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245

>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36  WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
           W+       PPL GWS YIPEG   SC  DY +     +N +F +Y+ +  FI+P+ VI 
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94  YCY---VFILHVVLAHGKEMSNLK 114
           +CY   VF +    A  +E +  +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.2
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.08
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.08
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.07
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.07
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.06
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.01
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	98.97
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	98.96
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	98.94
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	98.91
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	98.89
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	98.89
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	98.85
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	98.83
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	98.76
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	98.73
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	98.42

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.20  E-value=3.1e-11  Score=90.29  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=69.0

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecC-----CcccccccccccccchHHHHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEG-----FMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVA   90 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~   90 (130)
                      +.+|+..++++++.++++++|++++++++|+++++.......     ....|.+.++.  .....|..+.+++.|++|++
T Consensus       142 P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~--~~~~~~~~~~~~~~f~iP~~  219 (510)
T 4grv_A          142 PFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDT--ATVKVVIQVNTFMSFLFPML  219 (510)
T ss_dssp             CCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCH--HHHHHHHHHHHHHHTHHHHH
T ss_pred             cccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCcccccccccc--chhhhhhhhhhhHHHhhhHH
Confidence            345777889999999999999999999999988765433221     12246544432  22455677777788999999


Q ss_pred             HHHHHHHHHHHHHHhcccc
Q psy7070          91 VITYCYVFILHVVLAHGKE  109 (130)
Q Consensus        91 ii~~~y~~I~~~l~~~~~~  109 (130)
                      +|++||.+|++.++++.+.
T Consensus       220 ii~~~Y~~I~~~l~~~~~~  238 (510)
T 4grv_A          220 VISILNTVIANKLTVMVNI  238 (510)
T ss_dssp             HHHHHHHHHHHHHHTSCTH
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999999999876443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.08  E-value=1.3e-10  Score=85.08  Aligned_cols=93  Identities=33%  Similarity=0.710  Sum_probs=71.6

Q ss_pred             HhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          17 KKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCY   96 (130)
Q Consensus        17 ~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y   96 (130)
                      .+++..++.+++..+++++|++++++++|+++++.....+.....|...+.........|.+..+++.+++|++++++||
T Consensus       141 ~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y  220 (448)
T 2z73_A          141 MAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCY  220 (448)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECTTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             ccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788999999999999999999999888776655444455786665443333455666777778999999999999


Q ss_pred             HHHHHHHHhcccc
Q psy7070          97 VFILHVVLAHGKE  109 (130)
Q Consensus        97 ~~I~~~l~~~~~~  109 (130)
                      ..|++.++++.++
T Consensus       221 ~~I~~~l~~~~~~  233 (448)
T 2z73_A          221 FNIVMSVSNHEKE  233 (448)
T ss_dssp             HHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876544

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.08  E-value=3.1e-10  Score=83.49  Aligned_cols=94  Identities=14%  Similarity=0.221  Sum_probs=67.9

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceee-cCCccccccccccccc--chHHHHHHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIP-EGFMTSCSWDYMSRTM--SNRAFYLYLLMFGFILPVAVI   92 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~-~~~~~~C~~~~~~~~~--~~~~~~~~~~~~~f~lPl~ii   92 (130)
                      +.+|+..++.+++..+++++|++++++++|+++++..... ..+...|...++....  ....|.+...++.|++|+++|
T Consensus       125 P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii  204 (484)
T 3vw7_A          125 PMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIIS  204 (484)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEETTTTEEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHH
Confidence            3456677899999999999999999999999887655432 2344578776654321  233366666778899999999


Q ss_pred             HHHHHHHHHHHHhcccc
Q psy7070          93 TYCYVFILHVVLAHGKE  109 (130)
Q Consensus        93 ~~~y~~I~~~l~~~~~~  109 (130)
                      ++||..|++.++++.+.
T Consensus       205 ~~~Y~~I~~~l~~~~~~  221 (484)
T 3vw7_A          205 TVCYVSIIRCLSSSANI  221 (484)
T ss_dssp             HHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHHHhHhhHH
Confidence            99999999999987653

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.07  E-value=3.4e-10  Score=82.87  Aligned_cols=91  Identities=21%  Similarity=0.289  Sum_probs=70.0

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhccee--ecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYI--PEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVIT   93 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~--~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~   93 (130)
                      +.+|+..++.+++..+++++|++++++++|+++++....  ...+...|...+..    ...|.+...++.|++|+++++
T Consensus       128 P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~----~~~~~~~~~~~~~~~p~~ii~  203 (467)
T 3uon_A          128 PLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFS----NAAVTFGTAIAAFYLPVIIMT  203 (467)
T ss_dssp             TTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSCCCCGGGG----SHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcceeecCc----chHHHHHHHHHHHHHHHHHHH
Confidence            346677889999999999999999999999987665431  12233468665542    345777777788999999999


Q ss_pred             HHHHHHHHHHHhccccc
Q psy7070          94 YCYVFILHVVLAHGKEM  110 (130)
Q Consensus        94 ~~y~~I~~~l~~~~~~~  110 (130)
                      +||+.|++.++++.+..
T Consensus       204 ~~y~~I~~~l~~~~~~~  220 (467)
T 3uon_A          204 VLYWHISRASKSRINIF  220 (467)
T ss_dssp             HHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHHhhhHH
Confidence            99999999999876543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.07  E-value=4.6e-10  Score=84.07  Aligned_cols=84  Identities=20%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             HhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          17 KKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCY   96 (130)
Q Consensus        17 ~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y   96 (130)
                      -+|+..++.+++..+++++|++++++++|+++++...   .+...|...++.   ....|.+.. ++.|++|+++|++||
T Consensus       167 ~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~---~~~~~C~~~~~~---~~~~~~~~~-~~~~~lPl~ii~~~Y  239 (520)
T 3v2y_A          167 MKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI---SALSSCSTVLPL---YHKHYILFC-TTVFTLLLLSIVILY  239 (520)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCT---TCGGGBCSSSTT---BBHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHeeccc---cCCCcccccCCc---cchHHHHHH-HHHHHHHHHHHHHHH
Confidence            3566778999999999999999999999998887654   344589776643   133444443 456999999999999


Q ss_pred             HHHHHHHHhcc
Q psy7070          97 VFILHVVLAHG  107 (130)
Q Consensus        97 ~~I~~~l~~~~  107 (130)
                      .+|++.++++.
T Consensus       240 ~~I~~~l~~~~  250 (520)
T 3v2y_A          240 CRIYSLVRTRN  250 (520)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhh
Confidence            99999998764

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.06  E-value=1.1e-10  Score=86.25  Aligned_cols=93  Identities=23%  Similarity=0.390  Sum_probs=71.2

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYC   95 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~   95 (130)
                      +.+|+..++.+++.++++++|++++++++|+++.+.. ....+...|...++.. .+...|.+...++.|++|++++++|
T Consensus       151 P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~~~~p~~ii~~~  228 (502)
T 3odu_A          151 ATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANV-SEADDRYICDRFYPND-LWVVVFQFQHIMVGLILPGIVILSC  228 (502)
T ss_dssp             TTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEE-EECSSSEEEEECCSSH-HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHheee-eccCCceEEeecCCch-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777888899999999999999999998775543 2334455787666542 2345577777778899999999999


Q ss_pred             HHHHHHHHHhccccc
Q psy7070          96 YVFILHVVLAHGKEM  110 (130)
Q Consensus        96 y~~I~~~l~~~~~~~  110 (130)
                      |..|++.++++.+..
T Consensus       229 y~~I~~~l~~~~~~~  243 (502)
T 3odu_A          229 YCIIISKLSHSGSNI  243 (502)
T ss_dssp             HHHHHHHGGGCSCCH
T ss_pred             HHHHHHHHhhcccch
Confidence            999999999876554

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.01  E-value=4e-10  Score=82.31  Aligned_cols=94  Identities=18%  Similarity=0.339  Sum_probs=71.1

Q ss_pred             hHHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccccccc-chHHHHHHHHHHHHHHHHHHHH
Q psy7070          15 KKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTM-SNRAFYLYLLMFGFILPVAVIT   93 (130)
Q Consensus        15 ~~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~f~lPl~ii~   93 (130)
                      .+.+|+..++.+++..+++++|++++++++|+++.... ....+...|...+..... +...|.+..+++.|++|+++++
T Consensus       120 ~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~-~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~  198 (464)
T 4dkl_A          120 HPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATT-KYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIIT  198 (464)
T ss_dssp             CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCC-EEETTEEECCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             ccccccccccccHhHHhHHHHHHHHHHHHHHHHHheee-cccCCCceEEeecCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778899999999999999999999998774433 333445578766654322 2345667777778999999999


Q ss_pred             HHHHHHHHHHHhcccc
Q psy7070          94 YCYVFILHVVLAHGKE  109 (130)
Q Consensus        94 ~~y~~I~~~l~~~~~~  109 (130)
                      +||..|++.++++.+.
T Consensus       199 ~~y~~i~~~l~~~~~~  214 (464)
T 4dkl_A          199 VCYGLMILRLKSVRNI  214 (464)
T ss_dssp             HHHHHHHHHCCCCCSH
T ss_pred             HHHHHHHHHHHHhcch
Confidence            9999999999876553

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=98.97  E-value=6.3e-10  Score=81.73  Aligned_cols=96  Identities=10%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeec----CCcccccccccc----cccchHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPE----GFMTSCSWDYMS----RTMSNRAFYLYLLMFGFIL   87 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~----~~~~~C~~~~~~----~~~~~~~~~~~~~~~~f~l   87 (130)
                      +.+|+..++++++..+++++|++++++++|+++++......    .....|...+..    .......|....+++.|++
T Consensus       124 P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (488)
T 3eml_A          124 PLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV  203 (488)
T ss_dssp             GGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC-------CCSSCTTCEECCHHHHSCHHHHHTTTHHHHTHH
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccceeeccccccchhHHHhHHHHHHHH
Confidence            44677788999999999999999999999998877643221    122356544321    1112333555556778999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccc
Q psy7070          88 PVAVITYCYVFILHVVLAHGKEMS  111 (130)
Q Consensus        88 Pl~ii~~~y~~I~~~l~~~~~~~~  111 (130)
                      |++++++||..|++.++++.+...
T Consensus       204 P~~ii~~~y~~I~~~l~~~~~~~~  227 (488)
T 3eml_A          204 PLLLMLGVYLRIFLAARRQLNIFE  227 (488)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999998765543

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=98.96  E-value=3.7e-10  Score=78.43  Aligned_cols=97  Identities=9%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             hHHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccccc-ccchHHHHHHHHHHHHHHHHHHHH
Q psy7070          15 KKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSR-TMSNRAFYLYLLMFGFILPVAVIT   93 (130)
Q Consensus        15 ~~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~~f~lPl~ii~   93 (130)
                      ++.+|+...+++++..+++++|++++++++|+.+.........+...|..++... ......|.....++.+++|+++++
T Consensus       115 ~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~  194 (315)
T 4amj_A          115 SPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMI  194 (315)
T ss_dssp             CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_pred             cccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHH
Confidence            3456777889999999999999999999988765433222222334665554322 223456777777778999999999


Q ss_pred             HHHHHHHHHHHhcccccc
Q psy7070          94 YCYVFILHVVLAHGKEMS  111 (130)
Q Consensus        94 ~~y~~I~~~l~~~~~~~~  111 (130)
                      ++|..|++.++++.++..
T Consensus       195 ~~y~~i~~~~~~~~~~~~  212 (315)
T 4amj_A          195 FVALRVYREAKEQIRKID  212 (315)
T ss_dssp             HHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            999999999988755443

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=98.94  E-value=1.4e-09  Score=81.05  Aligned_cols=93  Identities=13%  Similarity=0.221  Sum_probs=66.7

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhh-hhhhhhcceeecCCccccccccccc-ccchHHHHHHHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTL-PPLFGWSCYIPEGFMTSCSWDYMSR-TMSNRAFYLYLLMFGFILPVAVIT   93 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~-P~~~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~~f~lPl~ii~   93 (130)
                      +.+|+..++++++..+++++|++++++++ |.+++|... ...+...|...+.+. ......|.+..+++.|++|+++|+
T Consensus       145 Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~  223 (500)
T 2rh1_A          145 PFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRA-THQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMV  223 (500)
T ss_dssp             SSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC-CSHHHHHHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cCcCCeeecccceeehhhHHHHHHHHHHhcchheeeecc-cccCcceecccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            34566778999999999999999999985 544444332 112233575544321 223456777777888999999999


Q ss_pred             HHHHHHHHHHHhcccc
Q psy7070          94 YCYVFILHVVLAHGKE  109 (130)
Q Consensus        94 ~~y~~I~~~l~~~~~~  109 (130)
                      +||..|++.++++.+.
T Consensus       224 ~~Y~~I~~~l~~~~~~  239 (500)
T 2rh1_A          224 FVYSRVFQEAKRQLNI  239 (500)
T ss_dssp             HHHHHHHHHHHHHCSH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887554

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=98.91  E-value=2.7e-10  Score=80.36  Aligned_cols=87  Identities=31%  Similarity=0.674  Sum_probs=66.8

Q ss_pred             cccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSR--TMSNRAFYLYLLMFGFILPVAVITYCYVFIL  100 (130)
Q Consensus        23 ~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~  100 (130)
                      .+.+++..+++++|++++++++|+++++.....+.....|...+...  ......|.....++.+++|++++++||..|+
T Consensus       149 ~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~  228 (349)
T 1u19_A          149 FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV  228 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTT
T ss_pred             eccchhHHHHHHHHHHHHHHHHHHHHheeeeeccCCceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888889999999999999999988776544444455787665432  1234567777777789999999999999999


Q ss_pred             HHHHhcccc
Q psy7070         101 HVVLAHGKE  109 (130)
Q Consensus       101 ~~l~~~~~~  109 (130)
                      +.++++.++
T Consensus       229 ~~l~~~~~~  237 (349)
T 1u19_A          229 FTVKEAAAQ  237 (349)
T ss_dssp             TSSCSCCCS
T ss_pred             HHHHHhhhh
Confidence            998876543

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=98.89  E-value=3e-09  Score=79.35  Aligned_cols=94  Identities=13%  Similarity=0.252  Sum_probs=66.5

Q ss_pred             hHHhhhhhcccchhHHHHHHHHHHHHHhhhhhh-hhhcceeecCCccccccccccc-ccchHHHHHHHHHHHHHHHHHHH
Q psy7070          15 KKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPL-FGWSCYIPEGFMTSCSWDYMSR-TMSNRAFYLYLLMFGFILPVAVI   92 (130)
Q Consensus        15 ~~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~-~~~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~~f~lPl~ii   92 (130)
                      ++.+|+..++++++..+++++|++++++++|+. +.+... ...+...|.....+. ......|.+...++.|++|++++
T Consensus       286 ~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~-~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii  364 (514)
T 3sn6_R          286 SPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRA-THQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIM  364 (514)
T ss_dssp             SHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC----CHHHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred             CccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceec-ccCcccceeecccccccccccHHHHHHHHHHHHHHHHHH
Confidence            345677788999999999999999999987664 444332 122233554443221 22345677788888899999999


Q ss_pred             HHHHHHHHHHHHhcccc
Q psy7070          93 TYCYVFILHVVLAHGKE  109 (130)
Q Consensus        93 ~~~y~~I~~~l~~~~~~  109 (130)
                      ++||..|++.++++.++
T Consensus       365 ~~~y~~I~~~l~~~~~~  381 (514)
T 3sn6_R          365 VFVYSRVFQEAKRQLQK  381 (514)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            99999999999876443

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=98.89  E-value=1.4e-09  Score=79.19  Aligned_cols=89  Identities=21%  Similarity=0.433  Sum_probs=64.9

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeec---CCcccccccccccccchHHHHHHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPE---GFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVI   92 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii   92 (130)
                      +.+|+..++.+++..+++++|++++++++|.+. +......   .....|..++..    ...|.++..++.|++|++++
T Consensus       113 P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~~~C~~~~~~----~~~~~~~~~~~~~~~p~~ii  187 (452)
T 3rze_A          113 PLRYLKYRTKTRASATILGAWFLSFLWVIPILG-WNHFMQQTSVRREDKCETDFYD----VTWFKVMTAIINFYLPTLLM  187 (452)
T ss_dssp             SCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHHC-CCC-------CCSSSSCCSCTT----CHHHHHHHHHHHTHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHhcccccccCCCCeecCCCcc----cHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999888543 3332211   234467655533    33466777778899999999


Q ss_pred             HHHHHHHHHHHHhcccc
Q psy7070          93 TYCYVFILHVVLAHGKE  109 (130)
Q Consensus        93 ~~~y~~I~~~l~~~~~~  109 (130)
                      ++||..|++.++++.+.
T Consensus       188 ~~~y~~I~~~l~~~~~~  204 (452)
T 3rze_A          188 LWFYAKIYKAVRQHCNI  204 (452)
T ss_dssp             HHHHHHHHHHSCCCCCH
T ss_pred             HHHHHHHHHHHHHhccH
Confidence            99999999999876554

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=98.83  E-value=1.2e-08  Score=74.87  Aligned_cols=80  Identities=24%  Similarity=0.458  Sum_probs=62.6

Q ss_pred             hhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          20 KKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFI   99 (130)
Q Consensus        20 ~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y~~I   99 (130)
                      ....+.+++..+++++|++++++++|+++++...   .+...|...+       ..|..+..++.|++|++++++||..|
T Consensus       151 ~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~---~~~~~C~~~~-------~~~~~~~~~~~~~ip~~ii~~~y~~i  220 (481)
T 3pbl_A          151 TGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT---GDPTVCSISN-------PDFVIYSSVVSFYLPFGVTVLVYARI  220 (481)
T ss_dssp             TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCC---SSTTCCSCCC-------HHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHheeccc---CCCCcccccC-------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999998876542   2334675432       23666677788999999999999999


Q ss_pred             HHHHHhcccc
Q psy7070         100 LHVVLAHGKE  109 (130)
Q Consensus       100 ~~~l~~~~~~  109 (130)
                      ++.++++.+.
T Consensus       221 ~~~l~~~~~~  230 (481)
T 3pbl_A          221 YVVLKQRRRK  230 (481)
T ss_dssp             HHHHHCCCCC
T ss_pred             HHHHHHhhhh
Confidence            9999886544

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=98.76  E-value=2.4e-08  Score=70.89  Aligned_cols=85  Identities=15%  Similarity=0.304  Sum_probs=63.3

Q ss_pred             cccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRT--MSNRAFYLYLLMFGFILPVAVITYCYVFIL  100 (130)
Q Consensus        23 ~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~  100 (130)
                      .+.+++..+++++|++++++++|.++ +.......+...|...++...  .....|.+...++.+++|++++++||..|.
T Consensus       142 ~~~~~~~~~i~~~W~~s~~~~~p~~~-~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~  220 (364)
T 2ks9_A          142 LSATATKVVICVIWVLALLLAFPQGY-YSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVG  220 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTTTT-TSCCCBCTTCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHhHHHH-HhhheecCCCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888999999999999998765 333333344557977765432  233567777777889999999999999999


Q ss_pred             HHHHhccc
Q psy7070         101 HVVLAHGK  108 (130)
Q Consensus       101 ~~l~~~~~  108 (130)
                      +.++++..
T Consensus       221 ~~l~~~~~  228 (364)
T 2ks9_A          221 ITLWASEI  228 (364)
T ss_dssp             HSSCSCCC
T ss_pred             HHHHhcCC
Confidence            99876543

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=98.73  E-value=2.6e-09  Score=77.74  Aligned_cols=95  Identities=11%  Similarity=0.264  Sum_probs=64.8

Q ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecC----Ccccccccccc----cccchHHHHHHHHHHHHHH
Q psy7070          16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEG----FMTSCSWDYMS----RTMSNRAFYLYLLMFGFIL   87 (130)
Q Consensus        16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~----~~~~C~~~~~~----~~~~~~~~~~~~~~~~f~l   87 (130)
                      +.+|+..++.+++..+++++|++++++++|+++++.......    ....|...+..    .......+....+++.|++
T Consensus       134 P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  213 (447)
T 4eiy_A          134 PLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV  213 (447)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHH
T ss_pred             ccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCccccccccccccchhhccccccchHHHHHHHHHHHHHH
Confidence            456778889999999999999999999999988765432211    11245443211    1111222333334456899


Q ss_pred             HHHHHHHHHHHHHHHHHhccccc
Q psy7070          88 PVAVITYCYVFILHVVLAHGKEM  110 (130)
Q Consensus        88 Pl~ii~~~y~~I~~~l~~~~~~~  110 (130)
                      |++++++||..|++.++++.++.
T Consensus       214 P~~ii~~~y~~I~~~l~~~~~~~  236 (447)
T 4eiy_A          214 PLLLMLGVYLRIFLAARRQLADL  236 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999998875543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=98.42  E-value=1.7e-07  Score=64.96  Aligned_cols=82  Identities=24%  Similarity=0.474  Sum_probs=56.5

Q ss_pred             cchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          25 KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS-RTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVV  103 (130)
Q Consensus        25 ~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~~~l  103 (130)
                      .+++..+++++|++++++++|+.+++.....+.....|...+.. .......|.+......+++|+.++.++|..+.+.+
T Consensus       122 ~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~  201 (296)
T 2lnl_A          122 RHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTL  201 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777889999999999998776654333333333333222 22234567777777889999999999999998877


Q ss_pred             Hhc
Q psy7070         104 LAH  106 (130)
Q Consensus       104 ~~~  106 (130)
                      +++
T Consensus       202 ~~~  204 (296)
T 2lnl_A          202 FKA  204 (296)
T ss_dssp             SSC
T ss_pred             HHH
Confidence            654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	2e-05

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 32  CIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYM--SRTMSNRAFYLYLLMFGFILPV 89
               W+       PPL GWS YIPEG   SC  DY       +N +F +Y+ +  FI+P+
Sbjct: 157 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPL 216

Query: 90  AVITYCYVFILHVVLAHGKEM 110
            VI +CY  ++  V     + 
Sbjct: 217 IVIFFCYGQLVFTVKEAAAQQ 237

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	98.08

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.08  E-value=6.4e-07  Score=61.37  Aligned_cols=87  Identities=31%  Similarity=0.679  Sum_probs=59.6

Q ss_pred             cccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070          23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVITYCYVFIL  100 (130)
Q Consensus        23 ~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~  100 (130)
                      .+.++....++++|.+++++.+|+.+++.......+...|......  .......+......+.+++|+++++++|.++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~  227 (348)
T d1u19a_         148 FGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV  227 (348)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTT
T ss_pred             cccccccccceeeehhhhheecccccccceeccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667777788988888888887765544444444455433322  12234556677777778999999999999999


Q ss_pred             HHHHhcccc
Q psy7070         101 HVVLAHGKE  109 (130)
Q Consensus       101 ~~l~~~~~~  109 (130)
                      +.++++...
T Consensus       228 ~~~~~~~~~  236 (348)
T d1u19a_         228 FTVKEAAAQ  236 (348)
T ss_dssp             TSSCSCCCS
T ss_pred             hhhcccccc
Confidence            888776544