Psyllid ID: psy7075

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
MKTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLLKEIV
ccHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccHHHHHHHcc
ccEEEEEEEEcccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHcccccHHHHHHHHHHcc
mktilcrqvfekplkeskiltreehgqiFVNWKEIIVCNHMFLRALRVRrdmsskgdirMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLtdqspefktisKKCRWISRIFLLETETISPLLKLISPLLKEIV
mktilcrqvfekplkeskiltreehgqifvnwkeiIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTdqspefktiskkcrWISRIFlletetispllklispllkeiv
MKTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETispllklispllkEIV
***ILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLL****
MKTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRD***KGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLLKEIV
MKTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLLKEIV
MKTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLLKEI*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLLKEIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query135 2.2.26 [Sep-21-2011]
Q9Z0R4 1714 Intersectin-1 OS=Mus musc yes N/A 0.748 0.058 0.549 3e-27
Q15811 1721 Intersectin-1 OS=Homo sap yes N/A 0.748 0.058 0.539 1e-25
Q9NZM3 1697 Intersectin-2 OS=Homo sap no N/A 0.748 0.059 0.519 5e-22
Q9Z0R6 1659 Intersectin-2 OS=Mus musc no N/A 0.725 0.059 0.505 6e-21
Q7Z628 596 Neuroepithelial cell-tran no N/A 0.733 0.166 0.313 5e-07
Q9Z206 595 Neuroepithelial cell-tran no N/A 0.733 0.166 0.303 3e-06
Q5ZLX4 524 Rho guanine nucleotide ex no N/A 0.614 0.158 0.329 3e-05
Q91X46 524 Rho guanine nucleotide ex no N/A 0.614 0.158 0.317 9e-05
Q9N0A8 526 Rho guanine nucleotide ex N/A N/A 0.614 0.157 0.317 9e-05
Q9NR81 526 Rho guanine nucleotide ex no N/A 0.614 0.157 0.317 9e-05
>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2 Back     alignment and function desciption
 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 1/102 (0%)

Query: 5    LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
            L  ++F+KPL ES++LT +E   IFVNWKE+I+CN   L+ALRVR+ MS  K  ++MIGD
Sbjct: 1251 LVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 1310

Query: 64   ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKK 105
            IL   LP M  Y+RFCSCQL+ AAL+Q+ TD++P+FK   K+
Sbjct: 1311 ILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKR 1352
Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.
Mus musculus (taxid: 10090)
>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3 Back     alignment and function description
>sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1 SV=2 Back     alignment and function description
>sp|Q7Z628|ARHG8_HUMAN Neuroepithelial cell-transforming gene 1 protein OS=Homo sapiens GN=NET1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z206|ARHG8_MOUSE Neuroepithelial cell-transforming gene 1 protein OS=Mus musculus GN=Net1 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZLX4|ARHG3_CHICK Rho guanine nucleotide exchange factor 3 OS=Gallus gallus GN=Arhgef3 PE=2 SV=1 Back     alignment and function description
>sp|Q91X46|ARHG3_MOUSE Rho guanine nucleotide exchange factor 3 OS=Mus musculus GN=Arhgef3 PE=1 SV=1 Back     alignment and function description
>sp|Q9N0A8|ARHG3_MACFA Rho guanine nucleotide exchange factor 3 OS=Macaca fascicularis GN=ARHGEF3 PE=2 SV=1 Back     alignment and function description
>sp|Q9NR81|ARHG3_HUMAN Rho guanine nucleotide exchange factor 3 OS=Homo sapiens GN=ARHGEF3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query135
328721590 1613 PREDICTED: intersectin-1 isoform 3 [Acyr 0.777 0.065 0.628 1e-32
328721586 1627 PREDICTED: intersectin-1 isoform 1 [Acyr 0.777 0.064 0.628 1e-32
380029395 1867 PREDICTED: LOW QUALITY PROTEIN: intersec 0.762 0.055 0.601 1e-31
383858957 1882 PREDICTED: intersectin-1-like [Megachile 0.762 0.054 0.601 1e-31
328793625 1761 PREDICTED: intersectin-1 [Apis mellifera 0.762 0.058 0.601 1e-31
350424212 1858 PREDICTED: intersectin-1-like [Bombus im 0.762 0.055 0.601 1e-31
322795863 1813 hypothetical protein SINV_80305 [Solenop 0.762 0.056 0.592 2e-31
340722813 1858 PREDICTED: intersectin-1-like [Bombus te 0.762 0.055 0.592 5e-31
332026970 525 Intersectin-1 [Acromyrmex echinatior] 0.792 0.203 0.579 7e-31
345482259 1728 PREDICTED: intersectin-1-like [Nasonia v 0.940 0.073 0.5 8e-31
>gi|328721590|ref|XP_003247350.1| PREDICTED: intersectin-1 isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 84/105 (80%)

Query: 8    QVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCE 67
            +VFEKPL ES +LT  +  +IF+NW+EII CN +FL +LRVRRDMSS G +R++GDILCE
Sbjct: 1159 EVFEKPLYESGVLTTSDICKIFINWEEIIECNQIFLTSLRVRRDMSSAGIVRIVGDILCE 1218

Query: 68   HLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRI 112
            H PRMT YVRFCSCQL+AA  LQKLT+ +P F  ++K+C+  SRI
Sbjct: 1219 HFPRMTRYVRFCSCQLNAAITLQKLTETNPAFCEVTKRCQSDSRI 1263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328721586|ref|XP_001947769.2| PREDICTED: intersectin-1 isoform 1 [Acyrthosiphon pisum] gi|328721588|ref|XP_003247349.1| PREDICTED: intersectin-1 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|380029395|ref|XP_003698359.1| PREDICTED: LOW QUALITY PROTEIN: intersectin-1-like [Apis florea] Back     alignment and taxonomy information
>gi|383858957|ref|XP_003704965.1| PREDICTED: intersectin-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328793625|ref|XP_393062.4| PREDICTED: intersectin-1 [Apis mellifera] Back     alignment and taxonomy information
>gi|350424212|ref|XP_003493723.1| PREDICTED: intersectin-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322795863|gb|EFZ18542.1| hypothetical protein SINV_80305 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340722813|ref|XP_003399795.1| PREDICTED: intersectin-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332026970|gb|EGI67066.1| Intersectin-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345482259|ref|XP_001607886.2| PREDICTED: intersectin-1-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query135
UNIPROTKB|D4A782189 Itsn1 "Intersectin-1" [Rattus 0.748 0.534 0.549 1.9e-26
UNIPROTKB|E1BKY4 1716 ITSN1 "Uncharacterized protein 0.748 0.058 0.549 6e-25
UNIPROTKB|L7MTN8 1716 ITSN1 "Uncharacterized protein 0.748 0.058 0.549 6e-25
UNIPROTKB|F1PHV6 1721 ITSN1 "Uncharacterized protein 0.748 0.058 0.549 6e-25
UNIPROTKB|E1BUQ4 1712 ITSN1 "Uncharacterized protein 0.748 0.058 0.558 7.6e-25
UNIPROTKB|D4A121 1713 Itsn1 "Intersectin 1" [Rattus 0.748 0.058 0.549 7.6e-25
MGI|MGI:1338069 1714 Itsn1 "intersectin 1 (SH3 doma 0.748 0.058 0.549 7.7e-25
UNIPROTKB|A8CTY3 1660 ITSN1 "Intersectin 1 long form 0.748 0.060 0.539 1.4e-23
UNIPROTKB|A8CTX8 1716 ITSN1 "Intersectin-1" [Homo sa 0.748 0.058 0.539 1.4e-23
UNIPROTKB|E9PD98 1721 ITSN1 "Intersectin-1" [Homo sa 0.748 0.058 0.539 1.5e-23
UNIPROTKB|D4A782 Itsn1 "Intersectin-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 56/102 (54%), Positives = 76/102 (74%)

Query:     5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
             L  ++F+KPL ES++LT +E   IFVNWKE+I+CN   L+ALRVR+ MS  K  ++MIGD
Sbjct:    29 LVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 88

Query:    64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKK 105
             IL   LP M  Y+RFCSCQL+ AAL+Q+ TD++P+FK   K+
Sbjct:    89 ILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKR 130
GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA
UNIPROTKB|E1BKY4 ITSN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|L7MTN8 ITSN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHV6 ITSN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUQ4 ITSN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|D4A121 Itsn1 "Intersectin 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1338069 Itsn1 "intersectin 1 (SH3 domain protein 1A)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A8CTY3 ITSN1 "Intersectin 1 long form variant 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A8CTX8 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PD98 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9Z0R4ITSN1_MOUSENo assigned EC number0.54900.74810.0589yesN/A
Q15811ITSN1_HUMANNo assigned EC number0.53920.74810.0586yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
pfam00621179 pfam00621, RhoGEF, RhoGEF domain 4e-17
cd00160181 cd00160, RhoGEF, Guanine nucleotide exchange facto 4e-15
smart00325180 smart00325, RhoGEF, Guanine nucleotide exchange fa 4e-12
COG5422 1175 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange 0.003
>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain Back     alignment and domain information 
 Score = 72.6 bits (179), Expect = 4e-17
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 5   LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
           +  +VF KPL+ES IL+ EE   IF N +EI+  +  FL  L  R  +    DI+ IGDI
Sbjct: 18  ILVEVFLKPLRESPILSEEEIKTIFSNIEEILELHQEFLEELEER--LEEWPDIQRIGDI 75

Query: 65  LCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCR 107
             +  P    Y  +CS    A  LL+KL  ++P F    K+C 
Sbjct: 76  FLKFAPFFKVYSTYCSNYPRALELLKKLRKKNPRFAKFLKECE 118

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179
>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 135
smart00325180 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.95
KOG3520|consensus 1167 99.94
KOG4305|consensus 1029 99.94
cd00160181 RhoGEF Guanine nucleotide exchange factor for Rho/ 99.94
KOG4424|consensus 623 99.92
KOG3523|consensus 695 99.91
PF00621180 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho 99.91
KOG2996|consensus 865 99.91
KOG2070|consensus 661 99.73
KOG3518|consensus 521 99.73
KOG3519|consensus 756 99.63
KOG3521|consensus 846 99.6
COG5422 1175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 99.54
KOG3522|consensus 925 99.5
KOG3524|consensus 850 99.28
KOG4240|consensus 1025 99.14
KOG0689|consensus 448 98.81
KOG3531|consensus 1036 98.79
KOG4269|consensus 1112 94.71
KOG3524|consensus 850 80.94
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Back     alignment and domain information 
Probab=99.95  E-value=1.3e-27  Score=171.68  Aligned_cols=132  Identities=29%  Similarity=0.403  Sum_probs=121.8

Q ss_pred             chHhHHHHHHHHHHhCC-CCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhh
Q psy7075           2 KTILCRQVFEKPLKESK-ILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCS   80 (135)
Q Consensus         2 ~L~~l~~~F~~pl~~~~-il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~   80 (135)
                      +|+.+.+.|..|+...+ ++++++++.||+|+++|+.+|+.|+.+|+++...| +.....+|++|.++.+.+++|..||.
T Consensus        15 ~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~-~~~~~~i~~~f~~~~~~~~~Y~~Y~~   93 (180)
T smart00325       15 DLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEW-DDSPERIGDVFLKLEEFFKIYSEYCS   93 (180)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcc-cccccHHHHHHHHhhHHHHHHHHHHH
Confidence            58899999999999987 99999999999999999999999999999986554 23478999999999888899999999


Q ss_pred             cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075          81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV  135 (135)
Q Consensus        81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~  135 (135)
                      |++.|.+.+++ +++|+.|+.|++.|+..+.|+++++.+  +.|+||+  |++||++|.
T Consensus        94 ~~~~~~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~  151 (180)
T smart00325       94 NHPDALELLKK-LKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELL  151 (180)
T ss_pred             hHHHHHHHHHH-hhcChhHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHHHHH
Confidence            99999999999 569999999999999999999999999  5999999  999999873

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
>KOG3520|consensus Back     alignment and domain information
>KOG4305|consensus Back     alignment and domain information
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain Back     alignment and domain information
>KOG4424|consensus Back     alignment and domain information
>KOG3523|consensus Back     alignment and domain information
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG2070|consensus Back     alignment and domain information
>KOG3518|consensus Back     alignment and domain information
>KOG3519|consensus Back     alignment and domain information
>KOG3521|consensus Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>KOG3522|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information
>KOG4240|consensus Back     alignment and domain information
>KOG0689|consensus Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG4269|consensus Back     alignment and domain information
>KOG3524|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
3jv3_A283 Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l 3e-28
1ki1_B 352 Guanine Nucleotide Exchange Region Of Intersectin I 4e-27
3qbv_B 351 Structure Of Designed Orthogonal Interaction Betwee 5e-27
3gf9_A295 Crystal Structure Of Human Intersectin 2 Rhogef Dom 5e-23
3jzy_A 510 Crystal Structure Of Human Intersectin 2 C2 Domain 6e-23
3eo2_A231 Crystal Structure Of The Rhogef Domain Of Human Neu 2e-08
2z0q_A 352 Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln) 2e-05
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 5   LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
           L  ++F+KPL ES++LT +E   IFVNWKE+I+CN   L+ALRVR+ MS  K  ++MIGD
Sbjct: 103 LVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 162
Query: 64  ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKK 105
           IL   LP M  Y+RFCSCQL+ AAL+Q+ TD++P+FK   K+
Sbjct: 163 ILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKR 204
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In Complex With Cdc42 Length = 352 Back     alignment and structure
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 351 Back     alignment and structure
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295 Back     alignment and structure
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 Back     alignment and structure
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human Neuroepithelial Cell- Transforming Gene 1 Protein Length = 231 Back     alignment and structure
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln) Length = 352 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 9e-28
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 4e-25
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 3e-23
2z0q_A 346 XPLN, RHO guanine nucleotide exchange factor 3; DH 6e-23
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 4e-22
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 1e-21
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-20
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-20
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 6e-20
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 6e-18
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 1e-17
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 3e-17
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 4e-17
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 1e-16
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 3e-13
1dbh_A 354 Protein (human SOS 1); guanine nucleotide exchange 5e-11
1nty_A 311 Triple functional domain protein; DBL, pleckstrin, 8e-08
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 2e-07
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283 Back     alignment and structure
 Score =  102 bits (256), Expect = 9e-28
 Identities = 56/104 (53%), Positives = 76/104 (73%), Gaps = 1/104 (0%)

Query: 5   LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
           L  ++F+KPL ES++LT +E   IFVNWKE+I+CN   L+ALRVR+ MS  K  ++MIGD
Sbjct: 103 LVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 162

Query: 64  ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCR 107
           IL   LP M  Y+RFCSCQL+ AAL+Q+ TD++P+FK   K+  
Sbjct: 163 ILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLA 206
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385 Back     alignment and structure
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536 Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377 Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418 Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466 Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377 Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402 Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587 Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354 Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311 Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354 Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query135
3jv3_A283 Intersectin-1; SH3 domain, DH domain, guanine nucl 99.97
2z0q_A 346 XPLN, RHO guanine nucleotide exchange factor 3; DH 99.97
1xcg_A 368 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.97
3p6a_A 377 RHO guanine nucleotide exchange factor 1; regulati 99.97
1txd_A 385 RHO guanine nucleotide exchange factor 12; helical 99.96
1by1_A209 Protein (PIX); RHO-GTPase exchange factor, transpo 99.96
3t06_A 418 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.96
2vrw_B 406 P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP 99.96
2dfk_A 402 Collybistin II; DH domain, PH domain, cell cycle; 99.96
1foe_A 377 T-lymphoma invasion and metastasis inducing protei 99.96
3odw_A 536 RHO guanine nucleotide exchange factor 1; regulati 99.96
3mpx_A 434 FYVE, rhogef and PH domain-containing protein 5; s 99.95
1dbh_A 354 Protein (human SOS 1); guanine nucleotide exchange 99.95
2pz1_A 466 RHO guanine nucleotide exchange factor 4; helical 99.95
3jzy_A 510 Intersectin 2; C2 domain, structural genomics cons 99.95
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 99.94
3ksy_A 1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 99.92
1kz7_A 353 Guanine nucleotide exchange factor DBS; guanine nu 99.92
1nty_A 311 Triple functional domain protein; DBL, pleckstrin, 99.91
2rgn_B 354 RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p 99.9
4gou_A 518 EHRGS-rhogef; RGS domain, DH domain, PH domain, RH 89.61
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Back     alignment and structure
Probab=99.97  E-value=2.7e-31  Score=201.99  Aligned_cols=134  Identities=44%  Similarity=0.799  Sum_probs=125.1

Q ss_pred             chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCC-CCccchHHHHHhhCCCcchHHHhhh
Q psy7075           2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSK-GDIRMIGDILCEHLPRMTAYVRFCS   80 (135)
Q Consensus         2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~-~~~~~IGdvfl~~~~~~~~Y~~Yc~   80 (135)
                      +|+++.++|+.|+...+++++.+++.||+|+++|+++|+.|+.+|+.+...+++ ...+.||++|+.+++.|++|..||+
T Consensus       100 ~L~~l~~~y~~~l~~~~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~~~Y~~Y~~  179 (283)
T 3jv3_A          100 DLQLVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCS  179 (283)
T ss_dssp             HHHHHHHHTTHHHHTTCSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHGGGGTHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHhhchhHHHHHc
Confidence            588999999999999999999999999999999999999999999988665433 3368999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075          81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV  135 (135)
Q Consensus        81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~  135 (135)
                      |++.|..+++++.++|+.|++|+++|+.+|.|++++|.+  ++|+||+  |++||++|.
T Consensus       180 ~~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~ll  238 (283)
T 3jv3_A          180 CQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNIL  238 (283)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhhhhHHHhcchHHHHHHHH
Confidence            999999999999999999999999999999999999998  5899999  999999973
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Back     alignment and structure
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Back     alignment and structure
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Back     alignment and structure
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Back     alignment and structure
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Back     alignment and structure
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Back     alignment and structure
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Back     alignment and structure
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Back     alignment and structure
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Back     alignment and structure
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Back     alignment and structure
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Back     alignment and structure
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Back     alignment and structure
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Back     alignment and structure
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Back     alignment and structure
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Back     alignment and structure
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 135
d1ki1b1210 a.87.1.1 (B:1229-1438) GEF of intersectin {Human ( 2e-16
d1txda1234 a.87.1.1 (A:766-999) Rho guanine nucleotide exchan 1e-12
d1by1a_209 a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI 7e-11
d1f5xa_208 a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta 2e-10
d1foea1206 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in 6e-10
d1xcga1228 a.87.1.1 (A:714-941) Rho guanine nucleotide exchan 2e-09
d1dbha1207 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H 2e-08
d2dfka1203 a.87.1.1 (A:37-239) Rho guanine nucleotide exchang 1e-07
d1kz7a1195 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse 5e-06
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-16
 Identities = 56/112 (50%), Positives = 77/112 (68%), Gaps = 1/112 (0%)

Query: 5   LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMS-SKGDIRMIGD 63
           L  ++F+KPL ES++LT +E   IFVNWKE+I+CN   L+ALRVR+ MS  K  ++MIGD
Sbjct: 30  LVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 89

Query: 64  ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLL 115
           IL   LP M  Y+RFCS QL+ AAL+Q+ TD++P+FK   K+     R   +
Sbjct: 90  ILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGM 141
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234 Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209 Back     information, alignment and structure
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208 Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206 Back     information, alignment and structure
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203 Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query135
d1ki1b1210 GEF of intersectin {Human (Homo sapiens) [TaxId: 9 99.96
d1f5xa_208 RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} 99.96
d2dfka1203 Rho guanine nucleotide exchange factor 9, Collybis 99.95
d1xcga1228 Rho guanine nucleotide exchange factor 11, PDZ-Rho 99.95
d1txda1234 Rho guanine nucleotide exchange factor 12 {Human ( 99.95
d1foea1206 GEF of TIAM1 (T-Lymphoma invasion and metastasis i 99.94
d1dbha1207 Son of sevenless-1 (sos-1) {Human (Homo sapiens) [ 99.93
d1by1a_209 beta-pix {Human (Homo sapiens) [TaxId: 9606]} 99.92
d1ntya1184 Triple functional domain protein TRIO {Human (Homo 99.87
d1kz7a1195 Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId 99.87
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.3e-29  Score=181.37  Aligned_cols=133  Identities=44%  Similarity=0.771  Sum_probs=124.6

Q ss_pred             chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCC-CccchHHHHHhhCCCcchHHHhhh
Q psy7075           2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKG-DIRMIGDILCEHLPRMTAYVRFCS   80 (135)
Q Consensus         2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~-~~~~IGdvfl~~~~~~~~Y~~Yc~   80 (135)
                      +|+++.++|..|+...+++++++++.||+|+++|+++|..|+.+|+.+...++++ ..+.||++|..+++.+++|..||.
T Consensus        27 ~L~~l~~~y~~~l~~~~~l~~~~~~~lF~~i~~l~~~h~~~l~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~~~Y~~Y~~  106 (210)
T d1ki1b1          27 DLQLVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCS  106 (210)
T ss_dssp             HHHHHHHHTHHHHHHHTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHHHGGGGTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHhhHHHHHHH
Confidence            5889999999999999999999999999999999999999999999876655333 368999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhh
Q psy7075          81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEI  134 (135)
Q Consensus        81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~  134 (135)
                      |++.|..+++++.++++.|+.|++.|+.+|.|++++|.+  +.|+||+  |+.||++|
T Consensus       107 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~llL~~l  164 (210)
T d1ki1b1         107 RQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNI  164 (210)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHhhcHHHHHHHHHHhhCcccccCCHHHHHHhHHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998  4999999  99999987
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Back     information, alignment and structure
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure