Psyllid ID: psy7083

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQADLIRCTCQVYLIFLISLMIYKRVR
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccccccccccccccEEEEEEccccEEEEEEccEEEEEccccEEEccccccccccHHHHccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEcccccccccccccccEEEEEEcccccEEEEEcccEEEEEHHHEcccccccccccHHHHHccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKSLQELSQEYYIaaypydstepgdltfnqDEVIYVTKkendwwtgtigdrtglfpsnyvvpyeaqvdqQADLIRCTCQVYLIFLISLMIYKRVR
Flexible Loop (DISEMBL)
MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKkendwwtgtIGDRTGLFPSNYVVPYEAQVDQQADLIRCTCQVYLIFLISLMIYKRVR
Low Complexity Region (SEG)
MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQADLIRCTCQVYLIFLISLMIYKRVR
Disordered region (IsUnstruct)
*********EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQADLIRCTCQVYLIFLISLMIYK***
Disordered Region (DISOPRED)
***********YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV*********************LIFLIS*M******
Disordered Region (DISEMBL)
MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQADLIRCTCQVYLIFLISLMIYKRVR
Disordered Region (DISPRO)
*****ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQADLIRCTCQVYLIFLISLMIYKR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQADLIRCTCQVYLIFLISLMIYKRVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
Q9NZM3	1697	Intersectin-2 OS=Homo sap	yes	N/A	0.589	0.032	0.631	4e-17
Q15811	1721	Intersectin-1 OS=Homo sap	no	N/A	0.557	0.030	0.648	5e-16
Q9Z0R6	1659	Intersectin-2 OS=Mus musc	yes	N/A	0.589	0.033	0.614	8e-16
Q9Z0R4	1714	Intersectin-1 OS=Mus musc	no	N/A	0.526	0.029	0.666	8e-16
O42287	1270	Intersectin-1 OS=Xenopus	N/A	N/A	0.589	0.044	0.578	2e-15
Q9WVE9	1217	Intersectin-1 OS=Rattus n	no	N/A	0.526	0.041	0.627	3e-14
P43603	459	LAS seventeen-binding pro	yes	N/A	0.505	0.104	0.470	2e-08
A7A261	459	LAS seventeen-binding pro	N/A	N/A	0.505	0.104	0.470	2e-08
P32793	468	Protein YSC84 OS=Saccharo	no	N/A	0.505	0.102	0.450	3e-08
Q9URW6	430	SH3 domain-containing pro	yes	N/A	0.494	0.109	0.44	4e-08

>sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
            E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P + +
Sbjct: 984  EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDQE 1040

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.
Homo sapiens (taxid: 9606)

>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 44/54 (81%)

Query: 7    LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
            +S E +IA Y Y+S+E GDLTF Q +VI VTKK+ DWWTGT+GD+ G+FPSNYV
Sbjct: 1002 VSGEEFIAMYTYESSEQGDLTFQQGDVILVTKKDGDWWTGTVGDKAGVFPSNYV 1055

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Isoform 1 could be involved in brain-specific synaptic vesicle recycling. Inhibits ARHGAP31 activity toward RAC1.

Homo sapiens (taxid: 9606)

>sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 44/57 (77%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
            E YIA Y Y S EPGDLTF + E I VT+K+ +WWTG+IG+RTG+FPSNYV P + +
Sbjct: 945  EDYIALYSYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGERTGIFPSNYVRPKDQE 1001

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Mus musculus (taxid: 10090)

>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
            E +IA Y Y+S+E GDLTF Q +VI VTKK+ DWWTGT+GD++G+FPSNYV
Sbjct: 998  EEFIAMYTYESSEQGDLTFQQGDVIVVTKKDGDWWTGTVGDKSGVFPSNYV 1048

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Mus musculus (taxid: 10090)

>sp|O42287|ITSN1_XENLA Intersectin-1 OS=Xenopus laevis GN=itsn1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
            E YI+ Y Y+S E GDLTF Q ++I V KK+ DWWTGT+G++TG+FPSNYV P +++
Sbjct: 989  EEYISMYTYESNEQGDLTFQQGDLIVVIKKDGDWWTGTVGEKTGVFPSNYVRPKDSE 1045

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Xenopus laevis (taxid: 8355)

>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/51 (62%), Positives = 41/51 (80%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
            E ++A Y Y+S+E GDLTF Q  VI VTKK+ DWWTGT+G+ +G+FPSNYV
Sbjct: 1002 EEFVAMYTYESSEHGDLTFQQGHVIVVTKKDGDWWTGTVGETSGVFPSNYV 1052

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Rattus norvegicus (taxid: 10116)

>sp|P43603|LSB3_YEAST LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSB3 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 13  IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
           +A Y +   E GDL F + +VI + KK   +NDWWTG +  R G+FP+NYV
Sbjct: 406 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 456

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A7A261|LSB3_YEAS7 LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=LSB3 PE=3 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 13  IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
           +A Y +   E GDL F + +VI + KK   +NDWWTG +  R G+FP+NYV
Sbjct: 406 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 456

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

>sp|P32793|YSC84_YEAST Protein YSC84 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSC84 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 13  IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
           +A Y +   +PGDL F + +VI + KK   +NDWWTG    + G+FP+NYV
Sbjct: 415 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 465

Essential for the organization of the actin cytoskeleton, fluid phase endocytosis and vesicle trafficking, together with LSB5.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 14  AAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
           A Y +   +PGDL+F + ++I + ++    +DWWTG IG R G+FP+NYV
Sbjct: 378 AMYSFAGEQPGDLSFQKGDIIDIVERSGSHDDWWTGRIGYREGIFPANYV 427

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
328721590	1613	PREDICTED: intersectin-1 isoform 3 [Acyr	0.536	0.031	0.75	7e-18
328721586	1627	PREDICTED: intersectin-1 isoform 1 [Acyr	0.536	0.031	0.75	7e-18
340722813	1858	PREDICTED: intersectin-1-like [Bombus te	0.663	0.033	0.687	8e-18
350424212	1858	PREDICTED: intersectin-1-like [Bombus im	0.663	0.033	0.687	9e-18
380029395	1867	PREDICTED: LOW QUALITY PROTEIN: intersec	0.526	0.026	0.784	2e-17
328793625	1761	PREDICTED: intersectin-1 [Apis mellifera	0.610	0.032	0.693	3e-17
383858957	1882	PREDICTED: intersectin-1-like [Megachile	0.526	0.026	0.764	3e-17
321470448	1734	hypothetical protein DAPPUDRAFT_317679 [	0.684	0.037	0.590	4e-17
405969497	1094	Intersectin-1 [Crassostrea gigas]	0.578	0.050	0.627	2e-16
307176875	1824	Intersectin-1 [Camponotus floridanus]	0.526	0.027	0.745	2e-16

>gi|328721590|ref|XP_003247350.1| PREDICTED: intersectin-1 isoform 3 [Acyrthosiphon pisum]

 Score = 94.7 bits (234), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 9   QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
           QEYYI  YPY+S EPGDL  NQDEV+ VTKK+ DWWTG IGDR+G+FPSNYV
Sbjct: 854 QEYYIVLYPYESVEPGDLNMNQDEVVLVTKKDGDWWTGIIGDRSGIFPSNYV 905

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721586|ref|XP_001947769.2| PREDICTED: intersectin-1 isoform 1 [Acyrthosiphon pisum] gi|328721588|ref|XP_003247349.1| PREDICTED: intersectin-1 isoform 2 [Acyrthosiphon pisum]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 9   QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
           QEYYI  YPY+S EPGDL  NQDEV+ VTKK+ DWWTG IGDR+G+FPSNYV
Sbjct: 854 QEYYIVLYPYESVEPGDLNMNQDEVVLVTKKDGDWWTGIIGDRSGIFPSNYV 905

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722813|ref|XP_003399795.1| PREDICTED: intersectin-1-like [Bombus terrestris]

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
            EYY+A YPYDS E GDLTFNQ EVI VTKKE DWWTGT GDR G+FP+NYV   +A  DQ
Sbjct: 1049 EYYVALYPYDSAEVGDLTFNQGEVILVTKKEGDWWTGTTGDRNGIFPANYVEKCDAP-DQ 1107

Query: 70   QADL 73
             A +
Sbjct: 1108 GASI 1111

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424212|ref|XP_003493723.1| PREDICTED: intersectin-1-like [Bombus impatiens]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
            EYY+A YPYDS E GDLTFNQ EVI VTKKE DWWTGT GDR G+FP+NYV   +A  DQ
Sbjct: 1049 EYYVALYPYDSAEIGDLTFNQGEVILVTKKEGDWWTGTTGDRNGIFPANYVEKCDAP-DQ 1107

Query: 70   QADL 73
             A +
Sbjct: 1108 GASI 1111

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029395|ref|XP_003698359.1| PREDICTED: LOW QUALITY PROTEIN: intersectin-1-like [Apis florea]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 44/51 (86%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
            EYY+A YPY STE GDLTFNQ EVI VTKKE DWWTG+IGDR G+FP+NYV
Sbjct: 1076 EYYVALYPYVSTETGDLTFNQGEVILVTKKEGDWWTGSIGDRNGIFPANYV 1126

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793625|ref|XP_393062.4| PREDICTED: intersectin-1 [Apis mellifera]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 48/62 (77%), Gaps = 4/62 (6%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV----VPYEA 65
            EYY+A YPY STE GDLTFNQ EVI VTKKE DWWTG IGDR G+FP+NYV    VP + 
Sbjct: 1074 EYYVALYPYVSTETGDLTFNQGEVILVTKKEGDWWTGIIGDRNGIFPANYVEKCDVPDQI 1133

Query: 66   QV 67
            Q+
Sbjct: 1134 QI 1135

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858957|ref|XP_003704965.1| PREDICTED: intersectin-1-like [Megachile rotundata]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 43/51 (84%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
            EYY+A YPY STEPGDL FNQ E+I VTKKE DWWTGTI DR G+FP+NYV
Sbjct: 1074 EYYMALYPYASTEPGDLNFNQGEIILVTKKEGDWWTGTIDDRVGVFPANYV 1124

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470448|gb|EFX81424.1| hypothetical protein DAPPUDRAFT_317679 [Daphnia pulex]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 48/66 (72%)

Query: 7    LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
            L + YYIA YPY+S EPGDL+F   E++ + KK+ DWWTGTIG RTG+FPSNYV   E Q
Sbjct: 1038 LEENYYIAMYPYESNEPGDLSFVAGEMVTIIKKDGDWWTGTIGARTGVFPSNYVQKAELQ 1097

Query: 67   VDQQAD 72
             +  AD
Sbjct: 1098 YEAAAD 1103

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405969497|gb|EKC34465.1| Intersectin-1 [Crassostrea gigas]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 48/59 (81%)

Query: 9    QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQV 67
            +E Y+A Y Y S+EPGDLTFNQ ++I VTKK+ DWWTG+IG+R+G+FP+NYV   E QV
Sbjct: 1019 EEPYVAMYSYTSSEPGDLTFNQGQLIQVTKKDGDWWTGSIGERSGIFPANYVKAAEQQV 1077

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|307176875|gb|EFN66216.1| Intersectin-1 [Camponotus floridanus]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 43/51 (84%)

Query: 10   EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
            EYY+A Y YDSTE GDL+FNQ EVI V KKE DWWTG +GD+TG+FPSNYV
Sbjct: 1037 EYYVALYRYDSTEAGDLSFNQGEVILVIKKEGDWWTGCVGDKTGIFPSNYV 1087

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
FB|FBgn0023388	1097	Dap160 "Dynamin associated pro	0.536	0.046	0.705	6.2e-17
UNIPROTKB|F1SDJ6	1666	ITSN2 "Uncharacterized protein	0.6	0.034	0.649	8.2e-16
UNIPROTKB|Q9NZM3	1697	ITSN2 "Intersectin-2" [Homo sa	0.6	0.033	0.631	1.4e-15
UNIPROTKB|E1BUQ4	1712	ITSN1 "Uncharacterized protein	0.568	0.031	0.648	2.9e-15
UNIPROTKB|I3LSM1	725	LOC100737549 "Uncharacterized	0.557	0.073	0.660	3.1e-15
UNIPROTKB|F1MC50	1679	ITSN2 "Uncharacterized protein	0.6	0.033	0.631	3.6e-15
UNIPROTKB|F1PR68	1697	ITSN2 "Uncharacterized protein	0.6	0.033	0.631	3.6e-15
UNIPROTKB|G3N0W1	1215	ITSN1 "Uncharacterized protein	0.568	0.044	0.648	5e-15
UNIPROTKB|E7ERJ0	1178	ITSN1 "Intersectin-1" [Homo sa	0.568	0.045	0.648	6.1e-15
UNIPROTKB|B4DTM2	1215	ITSN1 "Intersectin-1" [Homo sa	0.568	0.044	0.648	6.4e-15

FB|FBgn0023388 Dap160 "Dynamin associated protein 160" [Drosophila melanogaster (taxid:7227)]

 Score = 212 (79.7 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query:    10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
             EYYIAAYPY+S E GDL+F+  E++ V KKE +WWTGTIG RTG+FPSNYV
Sbjct:   782 EYYIAAYPYESAEEGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYV 832

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP;TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045179 "apical cortex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

GO:0045860 "positive regulation of protein kinase activity" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1SDJ6 ITSN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 213 (80.0 bits), Expect = 8.2e-16, P = 8.2e-16
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query:    10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
             E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDRTG+FPSNYV P + +
Sbjct:   955 EEYIALYPYSSVEPGDLTFAEGEEILVTQKDGEWWTGSIGDRTGIFPSNYVKPKDQE 1011

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q9NZM3 ITSN2 "Intersectin-2" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query:    10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
             E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P + +
Sbjct:   984 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDQE 1040

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005070 "SH3/SH2 adaptor activity" evidence=TAS

UNIPROTKB|E1BUQ4 ITSN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 35/54 (64%), Positives = 45/54 (83%)

Query:     7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
             +S E Y+A Y Y+S+E GDLTF Q ++I VTKK+ DWWTGT+GD+TG+FPSNYV
Sbjct:   992 MSGEEYVAMYTYESSEQGDLTFQQGDMILVTKKDGDWWTGTLGDKTGVFPSNYV 1045

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0070064 "proline-rich region binding" evidence=IEA

UNIPROTKB|I3LSM1 LOC100737549 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 35/53 (66%), Positives = 44/53 (83%)

Query:     8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
             S E +IA Y Y+S+E GDLTF Q +VI VTKK+ DWWTGT+GD++G+FPSNYV
Sbjct:   462 SGEEFIAMYTYESSEQGDLTFQQGDVILVTKKDGDWWTGTVGDKSGVFPSNYV 514

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

UNIPROTKB|F1MC50 ITSN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 207 (77.9 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query:    10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
             E YIA Y Y S EPGDLTF + E I VT+K+ +WWTG+IGDRTG+FPSNYV P + +
Sbjct:   966 EEYIALYSYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRTGIFPSNYVKPKDQE 1022

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1PR68 ITSN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query:    10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
             E YIA Y Y S EPGDLTF + E I VT+K+ +WWTG+IGDRTG+FPSNYV P + +
Sbjct:   984 EEYIALYSYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRTGIFPSNYVKPKDQE 1040

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|G3N0W1 ITSN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 35/54 (64%), Positives = 45/54 (83%)

Query:     7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
             +S E +IA Y Y+S+E GDLTF Q +VI VTKK+ DWWTGT+GD++G+FPSNYV
Sbjct:   997 VSGEEFIAMYTYESSEQGDLTFQQGDVILVTKKDGDWWTGTVGDKSGVFPSNYV 1050

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E7ERJ0 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 35/54 (64%), Positives = 44/54 (81%)

Query:     7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
             +S E +IA Y Y+S+E GDLTF Q +VI VTKK+ DWWTGT+GD+ G+FPSNYV
Sbjct:   960 VSGEEFIAMYTYESSEQGDLTFQQGDVILVTKKDGDWWTGTVGDKAGVFPSNYV 1013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|B4DTM2 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 6.4e-15, P = 6.4e-15
 Identities = 35/54 (64%), Positives = 44/54 (81%)

Query:     7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
             +S E +IA Y Y+S+E GDLTF Q +VI VTKK+ DWWTGT+GD+ G+FPSNYV
Sbjct:   997 VSGEEFIAMYTYESSEQGDLTFQQGDVILVTKKDGDWWTGTVGDKAGVFPSNYV 1050

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z0R6	ITSN2_MOUSE	No assigned EC number	0.6140	0.5894	0.0337	yes	N/A
Q9NZM3	ITSN2_HUMAN	No assigned EC number	0.6315	0.5894	0.0329	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	95
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	3e-29
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	3e-23
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	8e-22
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	6e-17
smart00326	56	smart00326, SH3, Src homology 3 domains	2e-16
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	2e-16
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	2e-15
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	4e-15
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	9e-15
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	9e-13
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	3e-12
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	4e-12
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	1e-11
pfam00018	47	pfam00018, SH3_1, SH3 domain	3e-11
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-10
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	2e-10
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	2e-10
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	3e-10
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	1e-09
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	1e-09
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	2e-09
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	2e-09
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	3e-09
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	4e-09
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	4e-09
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	4e-09
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	4e-09
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	4e-09
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	5e-09
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	5e-09
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	5e-09
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	6e-09
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	6e-09
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	6e-09
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	7e-09
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	7e-09
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	7e-09
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	1e-08
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-08
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	2e-08
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	2e-08
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	3e-08
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	4e-08
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	4e-08
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	4e-08
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	5e-08
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	7e-08
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	7e-08
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	1e-07
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	1e-07
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	1e-07
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	1e-07
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	2e-07
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	2e-07
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	2e-07
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-07
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	2e-07
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	3e-07
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	4e-07
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	4e-07
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	5e-07
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	5e-07
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	5e-07
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	5e-07
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	8e-07
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	9e-07
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	1e-06
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	1e-06
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	2e-06
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	2e-06
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	2e-06
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	2e-06
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	2e-06
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	3e-06
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	4e-06
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	4e-06
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	4e-06
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	4e-06
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	4e-06
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	4e-06
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	5e-06
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	6e-06
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	7e-06
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	8e-06
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	8e-06
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	8e-06
cd11957	52	cd11957, SH3_RUSC2, Src homology 3 domain of RUN a	9e-06
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	1e-05
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	1e-05
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	1e-05
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-05
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	2e-05
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	2e-05
cd11984	52	cd11984, SH3_Shank3, Src homology 3 domain of SH3	2e-05
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	2e-05
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-05
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	3e-05
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	3e-05
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	3e-05
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	3e-05
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	3e-05
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	4e-05
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	4e-05
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	4e-05
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	4e-05
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	5e-05
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	5e-05
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	5e-05
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	5e-05
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	5e-05
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	5e-05
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	6e-05
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	6e-05
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	7e-05
cd11979	63	cd11979, SH3_VAV1_1, First Src homology 3 domain o	7e-05
cd11932	57	cd11932, SH3_SH3RF2_2, Second Src Homology 3 domai	9e-05
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	1e-04
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	1e-04
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	2e-04
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	2e-04
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	2e-04
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	2e-04
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	2e-04
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	2e-04
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	3e-04
cd11931	55	cd11931, SH3_SH3RF3_2, Second Src Homology 3 domai	3e-04
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	3e-04
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	3e-04
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	3e-04
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	3e-04
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	4e-04
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	5e-04
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	5e-04
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	5e-04
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	5e-04
cd11925	57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	6e-04
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	9e-04
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	0.001
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	0.001
cd12065	54	cd12065, SH3_GRAF2, Src Homology 3 domain of GTPas	0.001
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	0.001
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	0.001
cd11924	56	cd11924, SH3_Vinexin_2, Second Src Homology 3 doma	0.001
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	0.002
cd11802	52	cd11802, SH3_Endophilin_B, Src homology 3 domain o	0.002
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	0.002
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	0.002
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	0.002
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	0.002
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	0.002
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	0.002
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	0.002
cd11835	54	cd11835, SH3_ARHGAP32_33, Src homology 3 domain of	0.003
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	0.003
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	0.003
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	0.003
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	0.004
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	0.004
cd11878	54	cd11878, SH3_Bem1p_1, First Src Homology 3 domain	0.004
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	0.004

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 98.6 bits (246), Expect = 3e-29
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 62
           YIA YPY+S EPGDLTFN  +VI VTKK+ +WWTGTIGDRTG+FPSNYV P
Sbjct: 1  EYIALYPYESNEPGDLTFNAGDVILVTKKDGEWWTGTIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 83.5 bits (206), Expect = 3e-23
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 62
          YIA YPY S+EPGDLTFN+ E I VT+K+ +WWTG+I DRTG+FPSNYV P
Sbjct: 2  YIALYPYSSSEPGDLTFNEGEEILVTQKDGEWWTGSIEDRTGIFPSNYVRP 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 80.0 bits (197), Expect = 8e-22
 Identities = 35/51 (68%), Positives = 42/51 (82%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 62
          Y+A Y Y+S E GDLTF Q +VI VTKK+ DWWTGT+GD+TG+FPSNYV P
Sbjct: 2  YVAMYTYESNEQGDLTFQQGDVILVTKKDGDWWTGTVGDKTGVFPSNYVRP 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 67.8 bits (166), Expect = 6e-17
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
            +A Y +   +PGDL F + ++I + KK   +NDWWTG IG R G+FP+NYV
Sbjct: 1  KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYV 53

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 66.4 bits (163), Expect = 2e-16
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYV 60
                A Y Y + +P +L+F + ++I V +K +D WW G +G  + GLFPSNYV
Sbjct: 1  EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYV 55

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 65.9 bits (162), Expect = 2e-16
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNY 59
          Y  A Y Y++ +  +L+F + ++I V +K++D WW G +   R GLFP+NY
Sbjct: 1  YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 63.6 bits (155), Expect = 2e-15
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYV---TKKENDWWTGTIGDRTGLFPSNYV 60
          A Y ++  +P DL+F   + I V   T  + DWW G +  R G+FP+NYV
Sbjct: 4  ALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 63.0 bits (154), Expect = 4e-15
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A Y ++  EPG+L F + ++I V    + DWW G +  R G+FP+NYV P
Sbjct: 4  ALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 61.9 bits (151), Expect = 9e-15
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRTGLFPSNYVVP 62
          + A Y Y++  P +L+F + +++Y++ K + +WW  T G +TGL PSNYV  
Sbjct: 2  FRALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVEE 53

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 57.0 bits (138), Expect = 9e-13
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          IA +PY +    +L+F + ++I V  K++ DWW G +  +TGLFPSNYV P
Sbjct: 3  IALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVEP 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 55.8 bits (135), Expect = 3e-12
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          +A Y Y + +  +L+F + ++IYVTKK ++ W+ G +   TGLFP NYV
Sbjct: 3  VALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 55.5 bits (134), Expect = 4e-12
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          A Y YD+ +  +L+FN+ ++I + K+  + WWTG +  + GLFP NYV
Sbjct: 4  ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYV 51

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 54.2 bits (131), Expect = 1e-11
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          A + ++ T   +L+F++ ++I VT+  E  WW GT+  +TG FPSNYV
Sbjct: 4  AKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 53.0 bits (128), Expect = 3e-11
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT-IGDRTGLFPS 57
          +A Y Y + EP +L+F + ++I V +K +D WW G   G + GL PS
Sbjct: 1  VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 51.7 bits (125), Expect = 1e-10
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVP 62
          Y    + Y +T+P +L+  + +V+ V  K+ N WW G  G R GL PS+YV  
Sbjct: 1  YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 51.2 bits (122), Expect = 2e-10
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          A + +  T   +L+F++ +VI+VT+ E   WW GT   RTG FPSNYV
Sbjct: 4  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 51.1 bits (123), Expect = 2e-10
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGLFPSNYV 60
           I  + YD+ EP +LT    ++I  V K E  WW GT+  + G+FP N+V
Sbjct: 2  VIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFV 51

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 50.6 bits (121), Expect = 3e-10
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A Y +++ E  +L FN  +VI V    N  WW G +  + GLFP+NYV P
Sbjct: 4  ALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVAP 53

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 49.2 bits (118), Expect = 1e-09
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRT-----GLFPSNY 59
          +A Y +       L+F   ++IYV  K  + WW G I   +     G FPSNY
Sbjct: 3  VALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 49.2 bits (117), Expect = 1e-09
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          IA Y Y +    +L+F++ ++I V  K++ DWW G I   TGLFPSNYV
Sbjct: 4  IAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYV 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 48.5 bits (116), Expect = 2e-09
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          A Y Y+  EPGDL+F + ++I + K+ + +W+ G    + G FP++YV
Sbjct: 4  ALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYV 51

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 48.7 bits (116), Expect = 2e-09
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
           Y+A Y +   E  DL     + I +    N DWW G I DR G FP+N+V
Sbjct: 1  TYVALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 48.1 bits (115), Expect = 3e-09
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIY--VTKKENDWWTGTIGDRTGLFPSNYVVP 62
          A Y   + +  +L+F   ++I       E  W  GT+  RTGL P NYV  
Sbjct: 4  ALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 48.0 bits (114), Expect = 4e-09
 Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          A Y Y+  EPGDL F++ ++I + ++ + +W+ G +    G FP+N+V
Sbjct: 5  ALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFV 52

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 47.9 bits (114), Expect = 4e-09
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
            +A + Y++++P DL F + +VI V  K N DW  G    + G+FPS +V  
Sbjct: 1  QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVED 53

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 47.6 bits (113), Expect = 4e-09
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 61
          Y++A Y + + E  DL F+  E I V    N+ WW G IG++TG FP N+++
Sbjct: 1  YFVALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGEKTGYFPMNFII 52

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 47.5 bits (113), Expect = 4e-09
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
          A Y YD+ E  +L+F   D++I +   ++DWW G      GLFPSNYV
Sbjct: 4  ALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYV 51

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 47.8 bits (114), Expect = 4e-09
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGDRTGLFPSNYVVP 62
           + A + Y+++   +LT  + + + V  K++       WWTG I DR G+FPSNYV  
Sbjct: 1  VWTAVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 47.3 bits (113), Expect = 5e-09
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRTGLFPSNYV 60
          A Y Y +    +L+    ++I V  K+++ WW G +  + G+FP+ YV
Sbjct: 4  ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYV 51

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 47.6 bits (113), Expect = 5e-09
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          Y+A Y +   E  DL     + + V    N DWW G  GDR G FP+N+V
Sbjct: 2  YVALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 47.5 bits (113), Expect = 5e-09
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGDRTGLFPSNYVVP 62
          + A + YD+    +LT  + + + V  K+        WWTG IGD+ G+FPSNYV P
Sbjct: 2  WTALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYVAP 58

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 47.4 bits (113), Expect = 6e-09
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-----WWTGTIGDRTGLFPS 57
          A Y Y++    +L+F +  +I + +K+++     WW G    R G+FPS
Sbjct: 4  ALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPS 52

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 47.1 bits (112), Expect = 6e-09
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A + +D  E G+L F + + I V    + +WW G    +TG+FP NYV P
Sbjct: 4  ALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVTP 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 47.5 bits (113), Expect = 6e-09
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVV 61
          +EY  A + Y+ T   +L F + E+I +  K   E  WW G +  + G+FP N+V 
Sbjct: 1  KEYCKALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFPDNFVS 56

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 47.0 bits (112), Expect = 7e-09
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
           Y A Y +++  P +++F   ++I V +    E  W  G +  +TG FP+NYV
Sbjct: 1  KYRALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYV 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 47.0 bits (112), Expect = 7e-09
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYVVP 62
               + Y++    +LT  + +++ +  K+ +   WW G +  + G+FP N+V P
Sbjct: 1  KARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 47.0 bits (112), Expect = 7e-09
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYV 60
            A YP+ + +   L+F + ++I V +++  WW G + G   G FP +YV
Sbjct: 2  ATALYPWRAKKENHLSFAKGDIITVLEQQEMWWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 46.9 bits (112), Expect = 1e-08
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYVVP 62
          Y +A   Y + +   L+F++ +VI +  KE      W  GT+  R+G FP  YV P
Sbjct: 1  YVVAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYVQP 56

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 46.9 bits (111), Expect = 1e-08
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
          A + +  T   +L+  + ++IYVT+ +E  WW GT+  +TG FPSNYV
Sbjct: 6  ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYV 53

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 46.2 bits (110), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGD-RTGLFPSNYV 60
           A Y Y + E  +++F + ++I  + + +  WW G     + GLFP+NYV
Sbjct: 3  KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYV 52

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 45.8 bits (109), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNY 59
          A Y   +    +LTF++ E+I VT +E+ +WW G I     R G+FP ++
Sbjct: 4  ALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 45.7 bits (108), Expect = 3e-08
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          I  Y Y +    +L F++ ++I V  KE+ DWW G +  + GLFPSNYV
Sbjct: 4  IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYV 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 45.4 bits (108), Expect = 4e-08
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGD-----RTGLFPSNYV 60
           A YPY+S    DL F+  ++I VT++E  DW+ G   D     + G+FP N+V
Sbjct: 5  KALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFV 58

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 45.3 bits (108), Expect = 4e-08
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 62
           +  + Y++    +L+  + + + V +K +D WW G    + G FPSNYV  
Sbjct: 2  AVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 45.2 bits (107), Expect = 4e-08
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTG-LFPSNYV 60
          A Y Y +    +L+F +  +I+ V+K+   WW G  G +    FPSNYV
Sbjct: 4  ALYDYRAKRSDELSFCKGALIHNVSKETGGWWKGDYGGKVQHYFPSNYV 52

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 44.8 bits (106), Expect = 5e-08
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A Y + + +P  L+F + ++I V    + +WW G I  R G FP NYV P
Sbjct: 4  AQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYVHP 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 44.8 bits (106), Expect = 7e-08
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          A Y +++ E  +LTF   E+I V    + +WW G+     GLFP+N+V
Sbjct: 5  ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 44.4 bits (105), Expect = 7e-08
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          +A + Y++  P DL F + + I V  + N  W  G    R G+FP  +VVP
Sbjct: 3  VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVVP 53

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 44.1 bits (104), Expect = 1e-07
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          A Y Y+  EPGDL FN+ ++I + +K ++ W+ G +    G  P++Y+
Sbjct: 5  ALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYI 52

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 43.9 bits (104), Expect = 1e-07
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRT--GLFPSNYVVP 62
          Y A Y +  +   +L+  +D+++Y+ +KE N WW     D +  G  P+ Y+  
Sbjct: 2  YKALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLEE 55

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          E  +A Y Y   +  +L+F +  +IYV KK +D W+ G +   TGLFP NYV
Sbjct: 3  EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 54

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 43.8 bits (104), Expect = 1e-07
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 62
          Y+A   Y++    +++  + EV+ V +K ++ WW    GD+ G  P++Y+ P
Sbjct: 2  YVAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 43.9 bits (103), Expect = 2e-07
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          A Y +++ E  +LTF   E+I V    + +WW G      GLFPSN+V
Sbjct: 6  ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 14 AAYPYDSTEPG-DLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 60
          A Y +    P  +L+  + +++ V  K      +++WW G   D R G FPSNYV
Sbjct: 4  ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYV 58

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 43.2 bits (102), Expect = 2e-07
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYVVP 62
          Y    + Y+   P +L   + +VI V  KE +   WW G +  R G FP N+V+P
Sbjct: 1  YCRVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVMP 55

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 43.4 bits (103), Expect = 2e-07
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
          A Y ++    G+L F + ++I +T +  EN W+ G +  ++G FP NYV
Sbjct: 5  ALYDFEPENEGELGFKEGDIITLTNQIDEN-WYEGMVNGQSGFFPVNYV 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 43.1 bits (102), Expect = 2e-07
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
             A + + + +P +L F   +VI V    + DWW G+I D  G FP+++V
Sbjct: 1  LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 42.8 bits (101), Expect = 3e-07
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 60
          +A Y Y + +  +++F+ D++I  +   +  WW G    + GLFP+NYV
Sbjct: 3  VALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYV 51

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 42.5 bits (100), Expect = 4e-07
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          A + +      +L F   +VI++  + N DW  GT+   TG+FP ++V
Sbjct: 4  ALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFV 51

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 42.3 bits (100), Expect = 4e-07
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
           A Y +++    +L+F + +VI +T++ ++ W+ G IG R G+FP +YV
Sbjct: 3  RAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDR-TGLFPSNYV 60
          A Y Y +  P +L+F +  +I  V K++  WW G  G +    FP+NYV
Sbjct: 4  ALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKWFPANYV 52

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 42.7 bits (100), Expect = 5e-07
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYV 60
          +A YPYD     DL+F + E + V ++  +WW        + G  PSNYV
Sbjct: 3  VALYPYDGIHEDDLSFKKGEKLKVIEEHGEWWKARSLTTKKEGFIPSNYV 52

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
            + Y      +L     + I V  +  + WW G +  + G+FPSN+V
Sbjct: 4  VLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFV 51

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 42.7 bits (100), Expect = 5e-07
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          +A Y Y   +  +L+F +  +IYV KK +D W+ G     TGLFP NYV
Sbjct: 3  VAIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYV 51

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 41.9 bits (98), Expect = 8e-07
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          A Y +++ E  +LTF   ++I +    + +WW G     TGLFPSN+V
Sbjct: 5  AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 41.8 bits (98), Expect = 9e-07
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 25 DLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          DL+ N  E++Y+ +K + +W+ G   + TG+FP+N+V
Sbjct: 15 DLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 41.6 bits (97), Expect = 1e-06
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
          A YP+ + +   L FN+++VI V ++++ WW G +  + G FP +YV
Sbjct: 4  ALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 41.3 bits (97), Expect = 1e-06
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          +A + Y +  P DL F+Q + I +  + N +W  G    R G+FP  + V 
Sbjct: 3  VAQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFAVR 53

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13 IAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 62
           A + Y      +L+F + D +    +  +DWW G +  + GL P  Y+  
Sbjct: 3  TAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYITL 53

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.9 bits (96), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY 59
          +A Y +      DL+F + + I VT+  + +W  G +  R G+FP  +
Sbjct: 3  VALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 40.7 bits (95), Expect = 2e-06
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          A   Y    PGDL FN+ +VI + ++ + +W+ G I   +G+FP++ V
Sbjct: 5  ALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGEINGVSGIFPASSV 52

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 40.6 bits (96), Expect = 2e-06
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWW------TGTIGDRTGLFPSNY 59
          Y+A Y Y++    DL+F + + + +    + DWW      TG    + G  PSNY
Sbjct: 2  YVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTG----KEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 40.6 bits (95), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVVP 62
            IA Y +  +   DL   + E + V K + +WW        + G  PSNYV  
Sbjct: 1  CVIAQYDFVPSNERDLQLKKGEKLQVLKSDGEWWLAKSLTTGKEGYIPSNYVAR 54

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 40.6 bits (95), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDR------TGLFPSNYV 60
          Y A + + +    +L+F   +   + ++  DWWT    DR       G  P+NY+
Sbjct: 2  YKALWDFKARGDEELSFQAGDQFRIAERSGDWWTALKLDRAGGVVAQGFVPNNYL 56

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 40.3 bits (94), Expect = 4e-06
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE------NDWWTGTIGDRTGLFPSNYVVP 62
          + A Y Y+++   +L+  + +V+ V  ++      + WW G I  R G+FP+NYV  
Sbjct: 2  WTALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYVTR 58

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 40.1 bits (94), Expect = 4e-06
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-------TGTIGDRTGLFPSNYVVP 62
           +A + Y +  P +L   + E + V  K  + W       TG    R G+FPSNYV P
Sbjct: 2  CVALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTG----RVGIFPSNYVSP 55

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 40.1 bits (94), Expect = 4e-06
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYVVP 62
          Y+A YPY   +P +L   + E+  VT+K  D W+ GT     ++G+FP NYV P
Sbjct: 2  YVALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYVQP 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 40.2 bits (94), Expect = 4e-06
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 60
          +A Y Y      +++F+  E I  +   +  WW GT     GLFP+NYV
Sbjct: 4  VALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYV 52

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 40.0 bits (94), Expect = 4e-06
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 17 PYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDR-----TGLFPSNYV 60
          P+ +T    L+    +++ V KK  + WW G +  R      G FP+NYV
Sbjct: 7  PFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYV 56

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 39.9 bits (94), Expect = 4e-06
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGD-RTGLFPSNYVVP 62
          +A Y +   EPGDL   + E   V       WW     +   G  PSNYV  
Sbjct: 3  VALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGNEGYIPSNYVTE 54

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 39.7 bits (93), Expect = 5e-06
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 14 AAYPYDST--EPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYV 60
          A YPYD++  +P +L+F + E++ V+     WW     +  TG+ PSNY+
Sbjct: 4  ALYPYDASPDDPNELSFEKGEILEVSDTSGKWWQARKSNGETGICPSNYL 53

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 39.6 bits (93), Expect = 6e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT-IGDRTGLFPSNYV 60
          Y A Y + S EP  L+F++ E   + ++ N  WW  T     TG  P+NYV
Sbjct: 2  YRALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYV 52

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 39.4 bits (92), Expect = 7e-06
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYV 60
          +A Y Y +    +LT ++ ++I V  K+ND WW G++ + + G FP+NYV
Sbjct: 3  VALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 39.2 bits (92), Expect = 8e-06
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 13 IAAYPYDST---EPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNY 59
           A Y ++     E   LTF + +VI V ++ ++ W  G +GD+ G+FP ++
Sbjct: 3  KALYDFEMKDEDEKDCLTFKKGDVITVIRRVDENWAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 39.5 bits (92), Expect = 8e-06
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGLFPSNYV 60
          I  + Y +    +LT    ++I  + K +  WW G I  R GLFP N+V
Sbjct: 3  IVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 39.3 bits (92), Expect = 8e-06
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNY 59
          A + Y++    +L+F + + + V +K    E +WW   + D+ G  P N 
Sbjct: 5  ALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNL 54

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212890 cd11957, SH3_RUSC2, Src homology 3 domain of RUN and SH3 domain-containing protein 2

 Score = 39.1 bits (91), Expect = 9e-06
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 20 STEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYV 60
          +TEPG L+FN+ +++ V ++ + DW   ++G  +GL P  YV
Sbjct: 10 ATEPGQLSFNKGDILQVLSRADGDWLRCSLGPDSGLVPIAYV 51

RUSC2, also called Iporin or Interacting protein of Rab1, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 39.1 bits (91), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 16 YPYDSTEPGDLTFNQDEVIYVTKKE---NDWWTGTIGDRTGLFPSNYV 60
          +PY++    +LT  + +++ +  K+     WW G +  R G+FP N+V
Sbjct: 6  FPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFV 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 16 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          + Y      +L     ++I + ++ E  WW+GT+  ++GLFPSN+V
Sbjct: 7  FEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 38.6 bits (90), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPS 57
          Y+IA   Y   E G+++ ++ + + V    E  +W G++  RTG FPS
Sbjct: 1  YFIAVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFPS 48

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
           A YP+ +    +L+  + ++IY+ ++ + +W+ G    R G+FP++YV
Sbjct: 3  RALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYV 60
          EY  A + +   +  DL F + E++ V +K  + WW     + +TG+ P  YV
Sbjct: 1  EYVRALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYV 53

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
          A Y + + +  +L+  + ++I +  K  +  WW G I  R G FP+NYV
Sbjct: 4  ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYV 52

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212917 cd11984, SH3_Shank3, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 3

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYV 60
          +IA   Y     G++  N+ E + V +  E  +W GT+  RTG FP++ V
Sbjct: 3  FIAVKAYSPQGEGEIQLNRGERVKVLSIGEGGFWEGTVKGRTGWFPADCV 52

Shank3, also called ProSAP2 (Proline-rich synapse-associated protein 2), is widely expressed. It plays a role in the formation of dendritic spines and synapses. Haploinsufficiency of the Shank3 gene causes the 22q13 deletion/Phelan-McDermid syndrome, and variants of Shank3 have been implicated in autism spectrum disorder, schizophrenia, and intellectual disability. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 38.5 bits (90), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGD-RTGLFPSNYV 60
          A Y Y + +  +++F+  ++I  + + +  WW GT  D   GLFP+NYV
Sbjct: 4  ALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYV 52

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG--TIGDRTGLFPSNYV 60
             A Y +DS   G+L+    EV+ +T+++    W  G  + G+  GLFPS+YV
Sbjct: 1  KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEV-GLFPSSYV 53

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 38.1 bits (89), Expect = 3e-05
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWW-----TGTIGDRTGLFPSNYV 60
          +A YP+      +L+F + E + + +K   + DWW      GT    TGL P NYV
Sbjct: 3  VALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGT----TGLVPRNYV 54

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 38.2 bits (88), Expect = 3e-05
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
          ++A Y Y+S    DL+F + E +  V   E DWW     T G +TG  PSNYV P
Sbjct: 2  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 55

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEV--IYVTKKENDWWTGTIGDRTGLFPSNYV 60
           A Y + + +  +L+  + +V  IY  K +  WW G I  R G FPS YV
Sbjct: 3  KARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYV 52

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 37.8 bits (88), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          +A + ++  +  +L+F++ +VI + +   + W  G +  + G+FP N+V
Sbjct: 3  VARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 37.9 bits (88), Expect = 3e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          Y A YP+++    +++FN  ++I V +K   E  W  G+     G FP NYV
Sbjct: 4  YRALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 55

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 37.7 bits (87), Expect = 4e-05
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 26 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
          L F+++++I V +++ +WW G +    G FP +YV
Sbjct: 16 LNFSKNDIITVLEQQENWWFGEVHGGRGWFPKSYV 50

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
          +A Y + +TE  +L F + +++ +   E+D  W+   +  R G  P NY+
Sbjct: 3  VALYSFQATESDELPFQKGDILKILNMEDDQNWYKAELQGREGYIPKNYI 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
          YI  Y YD+    +LT    E+I   KK  E  W  G +  R G+FP N+V
Sbjct: 2  YIVEYDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFPDNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 37.7 bits (87), Expect = 4e-05
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          A Y + +    +L+F + + +Y+ +K + +W+ G    R G+FP +YV
Sbjct: 5  AVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYV 52

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 37.3 bits (87), Expect = 5e-05
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
          +A + + +T   +L+F +  ++ V   E+D  W+   +  + GL P NY+
Sbjct: 3  VAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 37.3 bits (86), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEV--IYVTKKENDWWTGTIGDRTGLFPSNYV 60
          IA Y + + +  +L+  + +V  IY     N WW G +  R G FPS YV
Sbjct: 4  IARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYV 53

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 37.3 bits (87), Expect = 5e-05
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 23 PGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
            +L   + +V+ +T   +  W+ G +  R G+FP  +V
Sbjct: 13 DEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.1 bits (86), Expect = 5e-05
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 16 YPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGD-RTGLFPSNYV 60
          Y Y+  E  ++   + E++  +   + DWW GT     +GLFPSNYV
Sbjct: 6  YDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGESGLFPSNYV 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 37.1 bits (86), Expect = 5e-05
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT-IGDRT-GLFPSNYV 60
          A Y +     GDL F + ++I V    +  WW+G    +   G+FPSN+V
Sbjct: 4  AVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 37.3 bits (86), Expect = 5e-05
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNY 59
          YY A YP+++    ++T    +++ V +    E  W  G +  +TG FP+NY
Sbjct: 1  YYRALYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANY 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 17 PYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 62
          PY      +L   + ++++V KK  D W+ GT+    +TGLFP ++V  
Sbjct: 7  PYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVES 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 37.0 bits (86), Expect = 6e-05
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
          A Y Y+  E  +L+F   +++   ++E++  W  G +  R GL+P+NYV
Sbjct: 4  ALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYV 52

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 37.1 bits (86), Expect = 7e-05
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYV 60
          +A + Y      +L+F + +V+ + +K  +DWW G      GL P  Y+
Sbjct: 5  VACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGEHNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212912 cd11979, SH3_VAV1_1, First Src homology 3 domain of VAV1 protein

 Score = 37.3 bits (86), Expect = 7e-05
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 17/68 (25%)

Query: 6  ELSQEYY------IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG--TIGDRTGLF 55
          E+ QEYY       A  P+    PGD       ++ +TK E +  WW G  T  +  G F
Sbjct: 3  EVFQEYYGIPPPPGAFGPFLRLNPGD-------IVELTKAEAEQNWWEGRNTSTNEIGWF 55

Query: 56 PSNYVVPY 63
          P N V PY
Sbjct: 56 PCNRVKPY 63

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The first SH3 domain of Vav1 has been shown to bind the adaptor protein Grb2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212865 cd11932, SH3_SH3RF2_2, Second Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 36.7 bits (85), Expect = 9e-05
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 26 LTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          L F +D++I V  + + +W  G +GD+ G+FP  +V
Sbjct: 22 LKFQKDDIITVISRVDENWAEGKLGDQVGIFPILFV 57

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGL-FPSNYV 60
          A + Y +    +LTF ++ +I  V K+E  WW G  G +  L FPSNYV
Sbjct: 8  ALFDYKAQREDELTFTKNAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 56

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 36.5 bits (84), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI-GD--RTGLFPSNYV 60
          A Y   +  P +LTF++ E+I V  +E+ +WW G I G+  R G FP ++V
Sbjct: 4  ALYNCVADNPDELTFSEGEIIIVDGEEDKEWWIGHIDGEPTRRGAFPVSFV 54

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 36.2 bits (83), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG--TIGDRTGLFPSNYVVP 62
           ++A Y Y++    DL+F + E    +   E DWW        + G  PSNYV P
Sbjct: 2  IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAP 56

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG--TIGDRTGLFPSNYV 60
           Y A   + + + GDL+F + EV+ +  K  D WW    + G+R GL P  Y+
Sbjct: 1  LYEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNR-GLVPKTYL 52

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 36.0 bits (83), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYV 60
          +A Y Y+ +  GDL F + E + + ++  +WW     T G   G  P N+V
Sbjct: 3  VALYSYEPSHDGDLGFEKGEKLRILEQSGEWWKAQSLTTGQE-GFIPFNFV 52

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
           A+ Y      +L     ++I V  + E  WW G +  +TG+FPSN++
Sbjct: 4  VAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 35.8 bits (82), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYV 60
          ++A  PY S   G+++ ++ E I V +  E  +W G +  R G FPS+ V
Sbjct: 3  FMAVKPYQSQAEGEISLSKGEKIKVLSVGEGGFWEGQVKGRVGWFPSDCV 52

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT-IGD-RTGLFPSNYVV 61
             + Y + +P +LT  + +V+ V +K  D W+ G  + D   G FPS+Y  
Sbjct: 3  QCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW---TGTIGDRTGLFPSNYVVP 62
          Y+A YPY   +  +L   + E+  V ++  D W   T     + G+FP NYV P
Sbjct: 2  YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212864 cd11931, SH3_SH3RF3_2, Second Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 26 LTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          LTF +DE++ V ++ + +W  G +GD+ G+FP  YV
Sbjct: 20 LTFTKDEILTVIRRVDENWAEGMLGDKIGIFPILYV 55

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT-------GLFPSNY 59
          Y A Y Y+     +LT  +D+++Y+ +K ++DWW   +   +       GL P+ Y
Sbjct: 2  YKALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          Y  A + + + +  +L F   +VI V +  N DWW G   DR   FP+++V
Sbjct: 2  YAEALWDHVTMDDQELAFKAGDVIRVLEASNKDWWWGRNEDREAWFPASFV 52

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 35.4 bits (81), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)

Query: 25 DLTFNQDEVIYVTKKEN-DWWTGTIG---DRTGLFPSNYV 60
          +LTF + EVI VT +E+ +WW G I    +R G+FP ++V
Sbjct: 15 ELTFVEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 54

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 35.4 bits (81), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
          ++A Y Y++    DL+F++ E   +    E DWW     T G+ TG  PSNYV P
Sbjct: 3  FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 56

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 35.0 bits (80), Expect = 4e-04
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-END--WWT-GTIGDRTGLFPSNYV 60
          A YP+ S+   +L F + EV+ V +K END  WW       + GL P NYV
Sbjct: 5  ALYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 34.9 bits (80), Expect = 5e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-----WWTGTIGDRTGLFPS 57
          A Y Y    P +L+F +  +I +  +  D     +W G  G R G+FPS
Sbjct: 4  ALYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFPS 52

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 35.0 bits (81), Expect = 5e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
          IA Y ++     DL F + +++ +     D  W+     D R G+ P+NYV
Sbjct: 5  IAKYNFNGASEEDLPFKKGDILTIVAVTKDPNWYKAKNKDGREGMIPANYV 55

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 34.7 bits (80), Expect = 5e-04
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYV 60
          +Y+  +     EP +L+F + ++IY+  KE D   WW G +  + GL P +Y+
Sbjct: 1  WYMGLWDCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGELNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 34.7 bits (80), Expect = 5e-04
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY 59
          Y +A Y + + EP +L F   + I +    E+ W  G +  R G+FP  +
Sbjct: 1  YGVALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPHRF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 34.6 bits (79), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 62
          Y+A Y Y   +  +L   + E+  V +K  D W      RT   G+FP NYV P
Sbjct: 3  YLALYAYKPQKNDELELRKGEMYRVIEKCQDGWFKGTSLRTGVSGVFPGNYVTP 56

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 34.1 bits (78), Expect = 9e-04
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 23 PGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          P +LT  + +++Y+ K+ + +W  G    R G+FP+NYV
Sbjct: 14 PKELTLQKGDIVYIHKEVDKNWLEGEHHGRVGIFPANYV 52

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 33.9 bits (77), Expect = 0.001
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 25 DLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          +L F   +VI V    N DWW G I D  G FP+++V
Sbjct: 20 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 56

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 33.8 bits (78), Expect = 0.001
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 12 YIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 62
          Y A Y Y + +  +++F + D +I V   ++ W  GT+  RT   G+ P+NYV  
Sbjct: 2  YRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTV-QRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212998 cd12065, SH3_GRAF2, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 2

 Score = 33.8 bits (77), Expect = 0.001
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIY--VTKKENDWWTGTIGDRTGLFPSNYV 60
          A YP ++    +L+F    +       +E  W  GT+  + GL P NYV
Sbjct: 4  AVYPCEAEHSSELSFEVGAIFEDVTLSREPGWLEGTLNGKRGLIPENYV 52

GRAF2, also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA. It regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle, and is involved in alpha-catenin recruitment at cell-cell junctions. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYV 60
          +Y   +     +P +L+F + + IY+  KE +   WW G +    GL P  Y+
Sbjct: 1  FYQGLWDCTGDQPDELSFKRGDTIYILSKEYNRFGWWVGEMKGTIGLVPKAYI 53

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 12 YIAAYPYDSTEPG-------DLTFNQDEVIYV--TKKENDWWTGTIGDRTGLFPSNYV 60
           +A + YD  E         +L+F   ++I V     E+ ++ G +  + GL PSN++
Sbjct: 2  MVALFDYDPRESSPNVDAEVELSFRAGDIITVFGEMDEDGFYYGELNGQRGLVPSNFL 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212857 cd11924, SH3_Vinexin_2, Second Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIG--DRTGLFPSNYV 60
          +A Y +      +L+F + E I + +K N+ W+ G I    R G+FP++YV
Sbjct: 4  VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 54

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
            +A Y Y    P +++  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 1  CVVALYDYQEKSPREVSMKKGDILTLLNSSNKDWWKVEVNDRQGFVPAAYV 51

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212736 cd11802, SH3_Endophilin_B, Src homology 3 domain of Endophilin-B

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 16 YPYDSTEPGDLTFNQDEVIYVTK---KENDWWTGTIGDRTGLFPSNY 59
          Y YD+ +  +L+   DEVI V +    + D+  G  G + G  P  Y
Sbjct: 6  YDYDAEDSTELSLLADEVITVYELPGMDEDYMMGERGSQRGKVPVAY 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 33.0 bits (76), Expect = 0.002
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGL---FPSNYVVP 62
          Y A Y Y      +L   + +++YV +K +D W+ GT   RTGL   FP NYV  
Sbjct: 2  YRALYSYTPQNEDELELREGDIVYVMEKCDDGWFVGTSE-RTGLFGTFPGNYVAR 55

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 32 EVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
          +VI + K  + WW G+   + G FPSNYV
Sbjct: 25 KVIVMEKCSDGWWRGSYNGQVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYV-----TKKENDWWTGTIGDRTGLFPSNY 59
          YY A Y +++  PG+L+  + +V+ V      K   +WW      + G  PSNY
Sbjct: 1  YYYALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLVEDRGKQGYVPSNY 54

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 14 AAYPYDSTEPGDLTFNQD---EVIYVTKKENDWWTGTIGD--RTGLFPSNYV 60
          A   ++  EPG+L+F Q    E+I        W+ G      R G  P+N+ 
Sbjct: 4  AKMDFEGVEPGELSFRQGDSIEIIGDLIPGLQWFVGRSKSSGRVGFVPTNHF 55

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 33.0 bits (75), Expect = 0.002
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPS 57
          +  A Y Y+     +L+F +  +I +  KEN     +W G    R G+FPS
Sbjct: 1  FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPS 51

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGDRT--GLFPSNYVVP 62
          A + Y + +  +LTF + +VI V   ++       W  G        G+FP N+   
Sbjct: 7  ATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGWLMGVKESTGCRGVFPENFTER 63

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 33.0 bits (75), Expect = 0.002
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 26 LTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          L F +D+++ V ++ + +W  G +GD+ G+FP +YV
Sbjct: 20 LPFAKDDILTVIRRVDENWAEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212769 cd11835, SH3_ARHGAP32_33, Src homology 3 domain of Rho GTPase-activating proteins 32 and 33, and similar proteins

 Score = 32.8 bits (75), Expect = 0.003
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 17 PYDSTEPGDLTFNQDEVIYV----TKKENDWWTGTIGDRTGLFPSNYV 60
           Y +  P +L+    +++ V      +E+ WW G  G + G FPS  V
Sbjct: 7  RYTAQAPDELSLEVGDIVSVIDMPPPEESTWWRGKKGFQVGFFPSECV 54

Members of this family contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP32 is also called RICS, PX-RICS, p250GAP, or p200RhoGAP. It is a Rho GTPase-activating protein for Cdc42 and Rac1, and is implicated in the regulation of postsynaptic signaling and neurite outgrowth. PX-RICS, a variant of RICS that contain PX and SH3 domains, is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. ARHGAP33, also called sorting nexin 26 or TCGAP (Tc10/CDC42 GTPase-activating protein), is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSN 58
          A + Y++    +L+F + + I + ++    E +WW   + D+ G  P N
Sbjct: 5  ALWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEGYVPKN 53

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          +A Y + + +  +L+  + +V+ +  +   +  WW G    R G FPS YV
Sbjct: 4  VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 54

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 32.5 bits (74), Expect = 0.003
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYV 60
          YY   +      P +L+F + ++IY+  KE +   WW G +    G+ P +Y+
Sbjct: 1  YYQGLWDCFGDNPDELSFQRGDLIYILSKEYNMYGWWVGELNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          Y+A   + +T+   L+F   + + V +K + DWW        G  P++++  
Sbjct: 2  YVAIADFVATDDSQLSFESGDKLLVLRKPSVDWWWAEHNGCCGYIPASHLHQ 53

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--W-WTGTIGDRTGLFPSNYV 60
          A Y Y   EP +L+F   E +   + E++  W    T G   GL+P+NYV
Sbjct: 6  AVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYV 55

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212811 cd11878, SH3_Bem1p_1, First Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWW--TGTIGDRTGLFPSNY 59
          A Y Y +  PG+L+F++ +  +V  +E   +W+  T  +  + GL P +Y
Sbjct: 4  ALYDYRAQTPGELSFSKGDFFHVIGEEDQGEWYEATNPVTGKRGLVPKSY 53

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 32.3 bits (73), Expect = 0.004
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 61
             + Y +    +L+  +   + V +K +D WW G+   + G FPSNYVV
Sbjct: 4  FVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVV 53

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.66
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.56
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.44
KOG2070|consensus	661		99.4
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.34
KOG2199|consensus	462		99.34
KOG1029|consensus	1118		99.32
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.29
KOG1118|consensus	366		99.25
KOG4225|consensus	489		99.22
KOG4226|consensus	379		99.21
KOG0162|consensus	1106		99.17
KOG4348|consensus	627		99.11
KOG2996|consensus	865		99.08
KOG4226|consensus	379		99.05
KOG2856|consensus	472		99.05
KOG4348|consensus	627		99.0
KOG4225|consensus	489		98.9
KOG4792|consensus	293		98.84
KOG1029|consensus	1118		98.81
KOG2546|consensus	483		98.8
KOG1264|consensus	1267		98.78
KOG0515|consensus	752		98.68
KOG1843|consensus	473		98.62
KOG3655|consensus	484		98.58
KOG1702|consensus	264		98.5
KOG3601|consensus	222		98.41
KOG3875|consensus	362		98.39
KOG4278|consensus	1157		98.24
KOG3523|consensus	695		98.22
KOG4773|consensus	386		98.16
KOG3632|consensus	1335		98.12
KOG3775|consensus	482		97.99
KOG3557|consensus	721		97.97
KOG2222|consensus	848		97.85
KOG4792|consensus	293		97.78
KOG2528|consensus	490		97.75
KOG4575|consensus	874		97.69
KOG0197|consensus	468		97.43
KOG1451|consensus	812		97.34
KOG0609|consensus	542		97.25
KOG3771|consensus	460		97.17
KOG3725|consensus	375		97.05
KOG4429|consensus	421		96.91
KOG3601|consensus	222		96.62
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	96.47
KOG0199|consensus	1039		96.14
KOG3565|consensus	640		95.95
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	95.85
KOG3632|consensus	1335		95.28
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	94.98
smart00287	63	SH3b Bacterial SH3 domain homologues.	94.35
PRK10884	206	SH3 domain-containing protein; Provisional	94.16
KOG3812|consensus	475		93.68
KOG3705|consensus	580		92.29
KOG2996|consensus	865		91.13
KOG0040|consensus	2399		90.99
PRK13914	481	invasion associated secreted endopeptidase; Provis	86.32
COG3103	205	SH3 domain protein [Signal transduction mechanisms	80.43

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.66  E-value=3.6e-16  Score=77.86  Aligned_cols=48  Identities=46%  Similarity=0.994  Sum_probs=43.6

Q ss_pred             EeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeE
Q psy7083          14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV   61 (95)
Q Consensus        14 al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~   61 (95)
                      |+|+|.++.+++|+|.+|++|.++.. +++||.++++|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            68999999999999999999999988 8999999999999999999985

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.56  E-value=1.5e-14  Score=73.60  Aligned_cols=52  Identities=40%  Similarity=0.898  Sum_probs=46.1

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEE-ec-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVT-KK-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~-~~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      +++|++||.+..+++|+|.+||++.++ .. +.+||.++.+|+.|+||.+|+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence            478999999999999999999999999 55 68999999999999999999976

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.44  E-value=3.5e-13  Score=66.70  Aligned_cols=45  Identities=31%  Similarity=0.762  Sum_probs=40.5

Q ss_pred             EEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcC
Q psy7083          13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPS   57 (95)
Q Consensus        13 ~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~   57 (95)
                      +|+|+|.++.+++|+|.+||.+.|+.. +.+||.++.  +++.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            589999999999999999999999998 789999997  479999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2070|consensus

Probab=99.40  E-value=1.1e-13  Score=95.15  Aligned_cols=54  Identities=39%  Similarity=0.796  Sum_probs=51.4

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .++|.|.|.+.+.++|+|.+||+|.|.+. +.|||.|..+|+.||||++||.++.
T Consensus        19 vvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK   73 (661)
T ss_pred             EEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence            58899999999999999999999999998 8999999999999999999999875

>smart00326 SH3 Src homology 3 domains

Probab=99.34  E-value=8.6e-12  Score=63.06  Aligned_cols=53  Identities=40%  Similarity=0.917  Sum_probs=48.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeC-CeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG-DRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~-g~~G~~P~~~v~~   62 (95)
                      ..++++++|.+..+++|++.+||.+.++.. +.+||.+++. ++.|+||.+|+..
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence            467899999999999999999999999998 8999999975 9999999999875

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG2199|consensus

Probab=99.34  E-value=2.3e-13  Score=91.40  Aligned_cols=56  Identities=30%  Similarity=0.657  Sum_probs=51.6

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ....++|||||++.+.+||+|++||+|.|++. +..||+|.+.+..|+||++||...
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~  270 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTAD  270 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhh
Confidence            34578999999999999999999999999998 899999999999999999999763

>KOG1029|consensus

Probab=99.32  E-value=8.3e-13  Score=94.72  Aligned_cols=55  Identities=38%  Similarity=0.809  Sum_probs=51.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .++.++|||.++++++|+|.+|++|.|+.+ ++.||.|..+|..|+||++||....
T Consensus      1054 ~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred             ceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence            467899999999999999999999999999 7899999999999999999996654

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.29  E-value=1.3e-11  Score=61.61  Aligned_cols=50  Identities=42%  Similarity=0.939  Sum_probs=45.7

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCC-eEEEEcCCCeE
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVV   61 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g-~~G~~P~~~v~   61 (95)
                      ++++++|.+..+++|++.+||.+.++.. +.+||.+++.+ +.|+||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            6789999999999999999999999998 79999999855 99999999875

>KOG1118|consensus

Probab=99.25  E-value=3.6e-12  Score=83.42  Aligned_cols=55  Identities=27%  Similarity=0.669  Sum_probs=51.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ..|+++|||++.+.++|.|+.||+|.+... +++||.|...|..|+||.+||..+.
T Consensus       307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlv  362 (366)
T KOG1118|consen  307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLV  362 (366)
T ss_pred             hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEec
Confidence            469999999999999999999999999998 9999999999999999999999865

>KOG4225|consensus

Probab=99.22  E-value=1.8e-11  Score=83.21  Aligned_cols=55  Identities=27%  Similarity=0.740  Sum_probs=52.2

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .++|+|+|.++...||.|.+||+|.|+.+ |..|..|..+|+.|+||++||+.+..
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence            37899999999999999999999999999 99999999999999999999999875

>KOG4226|consensus

Probab=99.21  E-value=3e-11  Score=78.30  Aligned_cols=54  Identities=26%  Similarity=0.611  Sum_probs=50.0

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .+.+.|.|.++..++|++.+|..+.|+++ .+|||+|..+|+.||||++|+.+..
T Consensus       109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~  163 (379)
T KOG4226|consen  109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEV  163 (379)
T ss_pred             ceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhc
Confidence            36778999999999999999999999999 8999999999999999999998754

>KOG0162|consensus

Probab=99.17  E-value=2.3e-11  Score=87.24  Aligned_cols=53  Identities=30%  Similarity=0.776  Sum_probs=49.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ..|.|+|+|.+++.+||+|++|++|.++.+ ..|||.|+.+|++||||.+||.+
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            469999999999999999999999999998 68999999999999999999965

>KOG4348|consensus

Probab=99.11  E-value=2.2e-11  Score=83.17  Aligned_cols=59  Identities=22%  Similarity=0.655  Sum_probs=53.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      ...|++.|.|.+++.++|.|+.||+|.++.. .+|||.|..+|..|+||+++|.++..++
T Consensus       100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~s  159 (627)
T KOG4348|consen  100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPS  159 (627)
T ss_pred             ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCC
Confidence            3479999999999999999999999999998 8999999999999999999999876443

>KOG2996|consensus

Probab=99.08  E-value=1.1e-10  Score=82.25  Aligned_cols=54  Identities=28%  Similarity=0.701  Sum_probs=47.8

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .++|-|||.+.+..+|+++.||++.+..+   +.|||+|+.+|+.||||++||++..
T Consensus       807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence            46677888888889999999999999886   5899999999999999999998643

>KOG4226|consensus

Probab=99.05  E-value=1.3e-10  Score=75.42  Aligned_cols=54  Identities=31%  Similarity=0.699  Sum_probs=50.1

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      .+.|||+|......+|+|++|+.+.|+.+   |++||.+++ .|+.|++|.+|+..+.
T Consensus       193 vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~  250 (379)
T KOG4226|consen  193 VVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLS  250 (379)
T ss_pred             EEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEec
Confidence            47899999999999999999999999987   688999996 9999999999999875

>KOG2856|consensus

Probab=99.05  E-value=3.2e-11  Score=80.69  Aligned_cols=54  Identities=28%  Similarity=0.570  Sum_probs=48.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEe-CCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTI-GDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~-~g~~G~~P~~~v~~~   63 (95)
                      ..++|||||.+++.++|+|+.|+.+..+.. | .||+.|+. .|+.|++|++||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            468999999999999999999999988877 4 89999997 599999999999764

>KOG4348|consensus

Probab=99.00  E-value=2.9e-10  Score=77.78  Aligned_cols=55  Identities=25%  Similarity=0.755  Sum_probs=50.5

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .+|+++|.|++++.++|.++.||++.++.+   +-|||.|..+|+.|.||-+++..+.
T Consensus       262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence            479999999999999999999999988776   5799999999999999999998765

>KOG4225|consensus

Probab=98.90  E-value=1.3e-09  Score=74.31  Aligned_cols=52  Identities=31%  Similarity=0.673  Sum_probs=48.5

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEE--EeCCeEEEEcCCCeEE
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTG--TIGDRTGLFPSNYVVP   62 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~--~~~g~~G~~P~~~v~~   62 (95)
                      .+.|+|.|.++..++|.|..||+|.|+++ |+||..|  ++.|.-|.||.+||+.
T Consensus       434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence            47999999999999999999999999999 9999999  5699999999999964

>KOG4792|consensus

Probab=98.84  E-value=7.2e-10  Score=70.26  Aligned_cols=56  Identities=29%  Similarity=0.726  Sum_probs=50.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ..++.++|||.+...++|.|++|+++.|+.+ ...||..++ .|+.|.+|.+||+...
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~  181 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYR  181 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhh
Confidence            4567889999999999999999999999999 788999996 9999999999998653

>KOG1029|consensus

Probab=98.81  E-value=2.7e-09  Score=77.14  Aligned_cols=55  Identities=31%  Similarity=0.696  Sum_probs=50.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .+|+|+|.|++.+.++++|..||+|.|-..   .+||.-|...|..||||.+||+.+.
T Consensus       694 vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~  751 (1118)
T KOG1029|consen  694 VKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIP  751 (1118)
T ss_pred             EEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcc
Confidence            478999999999999999999999988765   5899999999999999999999764

>KOG2546|consensus

Probab=98.80  E-value=2e-09  Score=73.22  Aligned_cols=54  Identities=37%  Similarity=0.821  Sum_probs=50.3

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .++++|||.+...++|+|..|-+|.++++ +++||.|..+|..|+||.+||+.+.
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            47889999999999999999999999999 8999999999999999999998654

>KOG1264|consensus

Probab=98.78  E-value=2.9e-09  Score=77.53  Aligned_cols=57  Identities=33%  Similarity=0.626  Sum_probs=50.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCC-eEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g-~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.+..+++|+|.++-+|..+.+ ..+||+|..+| ..+|||++||+++..
T Consensus       774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence            3578999999999999999999999999988 67799999865 569999999998764

>KOG0515|consensus

Probab=98.68  E-value=5.8e-09  Score=73.04  Aligned_cols=54  Identities=22%  Similarity=0.630  Sum_probs=48.8

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-c---CCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E---NDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~---~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .+.|+|||+++..++|+|..||.+.|+++ +   ..||+++++|++|++|.+|+..+.
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP  742 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP  742 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence            57899999999999999999999999987 3   579999999999999999987653

>KOG1843|consensus

Probab=98.62  E-value=1.9e-08  Score=68.33  Aligned_cols=56  Identities=41%  Similarity=0.873  Sum_probs=50.4

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-c--CCEEEEEeCCeEEEEcCCCeEE
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~--~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ..++.+.++|+|.+..+.++.|++||+|.++.+ +  ..||+++.++.+|+||++||+.
T Consensus       414 l~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  414 LEPNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             cCcceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            345679999999999999999999999998887 3  7899999999999999999963

>KOG3655|consensus

Probab=98.58  E-value=1.3e-08  Score=70.02  Aligned_cols=56  Identities=29%  Similarity=0.666  Sum_probs=50.5

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~   63 (95)
                      .+..+.|+|||++.++.+++|..++.|..+.. +.|||.|.. .|..|+||++||+.+
T Consensus       426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             cCCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            34568999999999999999999999998888 999999995 899999999999754

>KOG1702|consensus

Probab=98.50  E-value=1.8e-07  Score=58.68  Aligned_cols=57  Identities=25%  Similarity=0.562  Sum_probs=49.5

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEE
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVP   62 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~   62 (95)
                      ...+..+.|.|||.++..++++|.-||-|.-... ++||..|..  +|..|..|++|++.
T Consensus       204 ~~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  204 SCTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             CCCCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence            3445678999999999999999999999876666 899988874  89999999999874

>KOG3601|consensus

Probab=98.41  E-value=1.9e-07  Score=58.67  Aligned_cols=55  Identities=35%  Similarity=0.732  Sum_probs=49.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ..+..++|||.++.+.++.+.+|+.+.++.. +..||.|+..|+.|+||++|+...
T Consensus       163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence            3467889999999999999999999999998 889999999999999999998643

>KOG3875|consensus

Probab=98.39  E-value=5.7e-08  Score=64.11  Aligned_cols=56  Identities=27%  Similarity=0.526  Sum_probs=47.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c-----CCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-----NDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-----~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|||.+.++.|++|++||.+.|..+ +     ..||..+.  .+..|++|.+||+.+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            568999999999999999999999998775 2     45888774  66789999999998864

>KOG4278|consensus

Probab=98.24  E-value=1.7e-06  Score=62.66  Aligned_cols=63  Identities=19%  Similarity=0.448  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEe-CCeEEEEcCCCeEEccCCccccccce
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTI-GDRTGLFPSNYVVPYEAQVDQQADLI   74 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~   74 (95)
                      .+.++|||||.+..++.|++.+|+.+.|+.-  +..|...+. +|+ ||+|++|+.++.  +.+.++|-
T Consensus        90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvN--SLeKhsWY  155 (1157)
T KOG4278|consen   90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVN--SLEKHSWY  155 (1157)
T ss_pred             CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-cccccccccccc--chhhcccc
Confidence            4578999999999999999999999999987  577999986 555 999999998763  33345553

>KOG3523|consensus

Probab=98.22  E-value=6.8e-08  Score=68.42  Aligned_cols=56  Identities=27%  Similarity=0.528  Sum_probs=50.1

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEccCC
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~   66 (95)
                      ++.++..|.+..+++|++..+|++.|+++ .+||..|..  +|..||||..|++++.++
T Consensus       610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~  668 (695)
T KOG3523|consen  610 QVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP  668 (695)
T ss_pred             hhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence            46677889999999999999999999999 899999995  899999999999987643

>KOG4773|consensus

Probab=98.16  E-value=3.1e-07  Score=61.45  Aligned_cols=65  Identities=18%  Similarity=0.445  Sum_probs=56.1

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc--CCcccccccee
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE--AQVDQQADLIR   75 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~--~~~~~~~~~~~   75 (95)
                      ...+++||.+....+|.+..|+++.++.+ +.+||.|+..+.+||+|.+++..+.  ++.+...+|.+
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpeeD~~~nw~r  244 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPEEDAGTNWLR  244 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCccccCCCCccc
Confidence            46778999999999999999999998887 7899999999999999999998865  23456678876

>KOG3632|consensus

Probab=98.12  E-value=3.9e-06  Score=62.65  Aligned_cols=60  Identities=25%  Similarity=0.569  Sum_probs=51.1

Q ss_pred             cCCccEEEEeccCCCC--------CCCCceecCCCEEEEEec-c-CCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           6 ELSQEYYIAAYPYDST--------EPGDLTFNQDEVIYVTKK-E-NDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~--------~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .++...++|+|||++-        ...||.|++|++|.|+.. | +|++.|+.+|+.|++|+++|.++..
T Consensus      1135 ~lparifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~v 1204 (1335)
T KOG3632|consen 1135 ALPARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPV 1204 (1335)
T ss_pred             cCcceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccC
Confidence            3455679999999863        346799999999999987 5 8999999999999999999998753

>KOG3775|consensus

Probab=97.99  E-value=2.4e-06  Score=57.90  Aligned_cols=59  Identities=17%  Similarity=0.443  Sum_probs=51.1

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEccCCccc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEAQVDQ   69 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~~~~   69 (95)
                      ..++++.|.+..++||.+.+||.+.|... ++-|..|.+  .|+.|+||+.|+.++......
T Consensus       264 THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~eed  325 (482)
T KOG3775|consen  264 THRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPEED  325 (482)
T ss_pred             hhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCchhh
Confidence            46788899999999999999999999888 888999985  999999999999987644333

>KOG3557|consensus

Probab=97.97  E-value=1.7e-06  Score=61.93  Aligned_cols=56  Identities=23%  Similarity=0.596  Sum_probs=50.5

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      .++..+|||.+.+..+|++.+||++.|+.....||.+++ .|+.|++|++.+..+..
T Consensus       501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~R~WW~~kn~~G~~GyvP~nIL~~~~~  557 (721)
T KOG3557|consen  501 KWVLVLYDFQARNSSELSVKKGEVLEVLDDGRKWWKVKNGHGRAGYVPSNILAPLQP  557 (721)
T ss_pred             eeeeeehhhhcccchhhhhhhhhhhhhhhccccceeccCccCCCCCcchhhhccCCC
Confidence            378889999999999999999999999988788999997 88999999999887653

>KOG2222|consensus

Probab=97.85  E-value=2.1e-06  Score=60.22  Aligned_cols=55  Identities=18%  Similarity=0.500  Sum_probs=49.4

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+.||...+.++|.|.++|++.++.. +.-.|.|+.+|-.||||+.+|+.+.
T Consensus       549 krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             HHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence            357789999999999999999999999988 8889999999999999999887654

>KOG4792|consensus

Probab=97.78  E-value=6.7e-05  Score=48.08  Aligned_cols=55  Identities=24%  Similarity=0.350  Sum_probs=46.5

Q ss_pred             cEEEEeccCCC--CCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDS--TEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~--~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .+++++++-.+  -.+..|.+++|+++.|.+. ..|-|.|+++|+.|.||..||+...
T Consensus       228 a~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d  285 (293)
T KOG4792|consen  228 AYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTD  285 (293)
T ss_pred             hheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeec
Confidence            45677776554  4567799999999999998 7899999999999999999998765

>KOG2528|consensus

Probab=97.75  E-value=8.7e-06  Score=56.22  Aligned_cols=54  Identities=28%  Similarity=0.497  Sum_probs=48.9

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ..+++|||.....+++++..++++.+...  ..|||.|.+ .|..|.||+.|++...
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR   60 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence            46889999999999999999999999887  489999997 8899999999999865

>KOG4575|consensus

Probab=97.69  E-value=0.0001  Score=53.26  Aligned_cols=57  Identities=32%  Similarity=0.483  Sum_probs=46.9

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEE-e--CCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT-I--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~-~--~g~~G~~P~~~v~~~~   64 (95)
                      .+..++|+|.+.++..++|.|..||++..+...+|||.+. .  ....|+||+++|..++
T Consensus         7 ~p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd   66 (874)
T KOG4575|consen    7 LPCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD   66 (874)
T ss_pred             CCceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence            4467899999999999999999999999988855555554 3  5667999999998765

>KOG0197|consensus

Probab=97.43  E-value=5.6e-05  Score=52.96  Aligned_cols=55  Identities=33%  Similarity=0.706  Sum_probs=47.7

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCE-EEEEec-cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEV-IYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~-i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ...+.++|+|.+..+.+|+|.+|++ ..++.. +..||..+.  .+..|++|.|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            4578999999999999999999999 666666 688999884  788899999999864

>KOG1451|consensus

Probab=97.34  E-value=0.00022  Score=51.27  Aligned_cols=53  Identities=30%  Similarity=0.606  Sum_probs=45.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEe-c-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTK-K-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~-~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ..+.+++...+..+.++++..|.++.-.. . .+||..|+.+|..|++|++||+.
T Consensus       757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~  811 (812)
T KOG1451|consen  757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEP  811 (812)
T ss_pred             ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCc
Confidence            35677888888899999999999987555 4 68999999999999999999975

>KOG0609|consensus

Probab=97.25  E-value=7.2e-05  Score=52.85  Aligned_cols=53  Identities=23%  Similarity=0.577  Sum_probs=43.0

Q ss_pred             cEEEEeccCCCCCC-------CCceecCCCEEEEEec-cCCEEEEEeC-----CeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKK-ENDWWTGTIG-----DRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~-------~~l~~~~g~~i~v~~~-~~~w~~~~~~-----g~~G~~P~~~v~~   62 (95)
                      .+++|+|||++..+       ..+.|.+||++.|+.. |..||.++..     +..|.+|+....+
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            57899999987654       4589999999999998 8899999863     4568999876654

>KOG3771|consensus

Probab=97.17  E-value=0.00023  Score=49.62  Aligned_cols=52  Identities=15%  Similarity=0.086  Sum_probs=44.0

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVV   61 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~   61 (95)
                      ..+++++||.+...++|+|..|+.|.|+..  ...||.|+..|..+-++.+|+.
T Consensus       401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  401 YKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             cceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence            368999999999999999999999999887  4779999987777666666664

>KOG3725|consensus

Probab=97.05  E-value=8.3e-05  Score=48.56  Aligned_cols=53  Identities=28%  Similarity=0.525  Sum_probs=47.0

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ..++++|||++..+.++++-.+++|.|..-   |.+|.-|+.+++.|-+|-.|++.
T Consensus       318 rkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlEL  373 (375)
T KOG3725|consen  318 RKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLEL  373 (375)
T ss_pred             cceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHh
Confidence            468999999999999999999999987764   78899999999999999988754

>KOG4429|consensus

Probab=96.91  E-value=0.00018  Score=47.73  Aligned_cols=52  Identities=12%  Similarity=0.068  Sum_probs=45.9

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      .|.++|+|.+...++|...+|++..+-.. ..|||.|+..|..|-||+.++++
T Consensus       365 lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEe  417 (421)
T KOG4429|consen  365 LCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEE  417 (421)
T ss_pred             HhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHH
Confidence            47889999999999999999999877666 79999999999999999888764

>KOG3601|consensus

Probab=96.62  E-value=0.00025  Score=44.86  Aligned_cols=50  Identities=14%  Similarity=0.385  Sum_probs=43.7

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeE
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVV   61 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~   61 (95)
                      +.++++|.+...+||+|.+|+.+.++..  +..|......|..|++|.++..
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~   54 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIR   54 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccc
Confidence            4678899999999999999999998887  3568888899999999998874

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=96.47  E-value=0.0063  Score=33.44  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             CCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083          22 EPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        22 ~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      +.-+|.+.+|+.+.|++. +..-|.+++ .|+-|++|.+++...+
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence            456799999999999998 778888997 9999999998886543

>KOG0199|consensus

Probab=96.14  E-value=0.0086  Score=44.62  Aligned_cols=51  Identities=31%  Similarity=0.533  Sum_probs=42.0

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEE
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVP   62 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~   62 (95)
                      ..+..+|+...++.|-+++||.|.|++.  ...||.|.+  +++.|.||.+-|..
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~  431 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA  431 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence            4455567778899999999999999887  357999974  88899999988873

>KOG3565|consensus

Probab=95.95  E-value=0.0014  Score=47.92  Aligned_cols=56  Identities=20%  Similarity=0.459  Sum_probs=48.9

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEE--eCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGT--IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~--~~g~~G~~P~~~v~~~~   64 (95)
                      ...+.++|.|+++.++.+.+..|+++.++..  .+||-+++  .++..|++|.+|+....
T Consensus       578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  578 IRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             ccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            4478999999999999999999999998887  58899998  58899999999987543

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=95.85  E-value=0.056  Score=26.64  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=28.0

Q ss_pred             eecCCCEEEEEec-cCC-EEEEE-eCCeEEEEcCCCeE
Q psy7083          27 TFNQDEVIYVTKK-END-WWTGT-IGDRTGLFPSNYVV   61 (95)
Q Consensus        27 ~~~~g~~i~v~~~-~~~-w~~~~-~~g~~G~~P~~~v~   61 (95)
                      .+..|+.+.++.. ..+ |.+.+ .++..||++..|++
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            5788999999888 333 99995 59999999998874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG3632|consensus

Probab=95.28  E-value=0.0091  Score=45.55  Aligned_cols=54  Identities=30%  Similarity=0.588  Sum_probs=45.7

Q ss_pred             EEEEeccCCCCC-------CCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTE-------PGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~-------~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ..++.+||.+++       ..+|.|..||+|.|...  ++|+..|..+|+.|.+|+++++...
T Consensus      1246 ~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1246 QMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAPN 1308 (1335)
T ss_pred             hhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCCC
Confidence            467788988764       46799999999999987  5889999999999999999987653

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.98  E-value=0.14  Score=25.41  Aligned_cols=35  Identities=14%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             ceecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCe
Q psy7083          26 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV   60 (95)
Q Consensus        26 l~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v   60 (95)
                      ..+..|..+.+.....+|.+.+.+|..||++...+
T Consensus        19 ~~l~~g~~v~v~~~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIECRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEccCCeEEEEECCeEEeEEeeec
Confidence            46778888888866789999999999999987654

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=94.35  E-value=0.19  Score=25.28  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             ceecCCCEEEEEeccC-CEEEEEe-CCeEEEEcCCCe
Q psy7083          26 LTFNQDEVIYVTKKEN-DWWTGTI-GDRTGLFPSNYV   60 (95)
Q Consensus        26 l~~~~g~~i~v~~~~~-~w~~~~~-~g~~G~~P~~~v   60 (95)
                      -.+..|+.+.++.... +|.+.+. .|..||++..++
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            3577899999988744 8999997 599999976554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.16  E-value=0.1  Score=33.29  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=31.4

Q ss_pred             ceecCCCEEEEEec-c-CCEEEEEe-CCeEEEEcCCCeEEc
Q psy7083          26 LTFNQDEVIYVTKK-E-NDWWTGTI-GDRTGLFPSNYVVPY   63 (95)
Q Consensus        26 l~~~~g~~i~v~~~-~-~~w~~~~~-~g~~G~~P~~~v~~~   63 (95)
                      -.+..|+.+.++.. + .+|.+.+. +|+.||++..|+...
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            36789999999887 3 68999985 889999999988653

>KOG3812|consensus

Probab=93.68  E-value=0.032  Score=38.18  Aligned_cols=46  Identities=28%  Similarity=0.713  Sum_probs=33.9

Q ss_pred             EEEeccCCCCCCC-------CceecCCCEEEEEec-cCCEEEEEe---CCeEEEEcC
Q psy7083          12 YIAAYPYDSTEPG-------DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS   57 (95)
Q Consensus        12 ~~al~~~~~~~~~-------~l~~~~g~~i~v~~~-~~~w~~~~~---~g~~G~~P~   57 (95)
                      +.+..+|.+.-.+       .++|...|.+.|-.+ +.+||.|+.   .+.-||+|+
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            3445677765433       468888888888888 899999994   445699996

>KOG3705|consensus

Probab=92.29  E-value=0.17  Score=35.49  Aligned_cols=53  Identities=19%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~   62 (95)
                      ....++++..+...+++.++.||.+.|... =+|.-+|.+  .++.|.||+--+++
T Consensus       510 Hn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  510 HNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             cceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence            356788899999999999999999988875 245556664  77889999876664

>KOG2996|consensus

Probab=91.13  E-value=0.16  Score=37.26  Aligned_cols=41  Identities=32%  Similarity=0.667  Sum_probs=33.2

Q ss_pred             CCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083          24 GDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        24 ~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ..|.+..|+++.++..  ...||.|++  .+..|+||++-|.+..
T Consensus       625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~  669 (865)
T KOG2996|consen  625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCP  669 (865)
T ss_pred             CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCC
Confidence            4578999999988776  477999996  5677999999888654

>KOG0040|consensus

Probab=90.99  E-value=0.0025  Score=50.32  Aligned_cols=58  Identities=26%  Similarity=0.668  Sum_probs=49.5

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCCccc
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVDQ   69 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~   69 (95)
                      +.++|+|...++-+.+.++||++.++.. ...||.+++..+.|++|..|+..+.....+
T Consensus       971 v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~~~~ 1029 (2399)
T KOG0040|consen  971 VLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPGSAS 1029 (2399)
T ss_pred             HHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccCCcc
Confidence            4678999999999999999999887776 788999999999999999999887644333

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=86.32  E-value=1.9  Score=31.07  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=30.8

Q ss_pred             eecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEE
Q psy7083          27 TFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus        27 ~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      .+..|+.+.++.. +.+|++.+. +|+.||+-..|+..
T Consensus       104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~  141 (481)
T PRK13914        104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD  141 (481)
T ss_pred             eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence            6789999999864 788999997 69999998888875

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=80.43  E-value=6.2  Score=25.29  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=29.8

Q ss_pred             eecCCCEEEEEecc--CCEEEEEe-CCeEEEEcCCCeEE
Q psy7083          27 TFNQDEVIYVTKKE--NDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus        27 ~~~~g~~i~v~~~~--~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      +++.|+.+.|+..+  .+|...+. .|..||++...+..
T Consensus        49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~   87 (205)
T COG3103          49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS   87 (205)
T ss_pred             EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence            78899999999883  46988886 88999999877664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	95
1uhf_A	69	Solution Structure Of The Third Sh3 Domain Of Human		5e-17
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		1e-08
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		2e-08
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		7e-08
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		2e-07
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		2e-07
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		3e-07
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		3e-07
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		8e-07
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		8e-07
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		1e-06
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		1e-06
1gri_A	217	Grb2 Length = 217		2e-06
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		2e-06
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		2e-06
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		2e-06
2jte_A	64	Third Sh3 Domain Of Cd2ap Length = 64		3e-06
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		3e-06
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		4e-06
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		4e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-06
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		5e-06
2xmf_A	60	Myosin 1e Sh3 Length = 60		5e-06
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		5e-06
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		5e-06
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		8e-06
1wa7_A	65	Sh3 Domain Of Human Lyn Tyrosine Kinase Length = 65		9e-06
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		1e-05
2vvk_A	56	Grb2 Sh3c (1) Length = 56		3e-05
1ynz_A	58	Sh3 Domain Of Yeast Pin3 Length = 58		3e-05
4iim_A	70	Crystal Structure Of The Second Sh3 Domain Of Itsn1		3e-05
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		5e-05
2f2x_A	62	Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62		6e-05
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		7e-05
2vwf_A	58	Grb2 Sh3c (2) Length = 58		1e-04
2k3b_A	62	Seeing The Invisible: Structures Of Excited Protein		1e-04
2rpn_A	59	A Crucial Role For High Intrinsic Specificity In Th		1e-04
2j6f_A	62	N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)		1e-04
3fj5_A	57	Crystal Structure Of The C-Src-Sh3 Domain Length =		1e-04
1jo8_A	58	Structural Analysis Of The Yeast Actin Binding Prot		2e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		2e-04
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		2e-04
2krm_A	57	Rdc Refined Solution Structure Of The First Sh3 Dom		2e-04
1qkw_A	62	Alpha-Spectrin Src Homology 3 Domain, N47g Mutant I		2e-04
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		3e-04
2f2w_A	62	Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62		3e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		3e-04
2cdt_A	62	Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62		3e-04
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		4e-04
2f2v_A	62	Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62		4e-04
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		4e-04
2cuc_A	70	Solution Structure Of The Sh3 Domain Of The Mouse H		5e-04
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		5e-04
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		5e-04
3m0p_A	62	Crystal Structure Of The R21d Mutant Of Alpha-Spect		5e-04
4esr_A	69	Molecular And Structural Characterization Of The Sh		5e-04
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		6e-04
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		6e-04
2lj3_A	63	Pfbd: High-Throughput Strategy Of Backbone Fold Det		6e-04
1m8m_A	62	Solid-State Mas Nmr Structure Of The A-Spectrin Sh3		6e-04
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		6e-04
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		6e-04
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		7e-04
1qwe_A	64	C-Src Sh3 Domain Complexed With Ligand App12 Length		8e-04
1prl_C	64	Two Binding Orientations For Peptides To Src Sh3 Do		8e-04
1qkx_A	62	Alpha-Spectrin Src Homology 3 Domain, N47a Mutant I		9e-04

>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Intersectin 2(Kiaa1256) Length = 69

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
          E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 9  EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS 64

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          S    +A Y +   E GDL F + +VI + KK   +NDWWTG +  R G+FP+NYV
Sbjct: 2  SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          +A Y +   +PGDL F + +VI + KK   +NDWWTG    + G+FP+NYV
Sbjct: 7  VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 6  ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
           +  ++  A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY 
Sbjct: 1  HMETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVAPYN 60
Query: 65 AQ 66
          + 
Sbjct: 61 SN 62

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVVPYEA 65
          A + +  T   +L+F++ +VI+VT+ +E  WW GT+  RTG FPSNYV   +A
Sbjct: 13 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 66
          ++  A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY + 
Sbjct: 3  KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYNSN 60

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
          A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY
Sbjct: 7  ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          IA Y Y +    +L+F++ ++I V  K++ DWW G I   TGLFPSNYV
Sbjct: 22 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 70

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
          SQ    A + +  T   +L+F++ +VI+VT+ +E  WW GT   RTG FPSNYV
Sbjct: 5  SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
          SQ    A + +  T   +L+F++ +VI+VT+ +E  WW GT   RTG FPSNYV
Sbjct: 5  SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
          A + +  T   +L+F++ +VI+VT+ +E  WW GT   RTG FPSNYV
Sbjct: 9  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          I  Y Y +    +L F++ ++I V  KE+ DWW G +  + GLFPSNYV
Sbjct: 6  IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 1   MKSLQELSQE--YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPS 57
           ++ ++++ Q+  Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP 
Sbjct: 148 LRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPR 207
Query: 58  NYVVPYEAQV 67
           NYV P    V
Sbjct: 208 NYVTPVNRNV 217

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 6  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 8  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          S  +  A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 4  SVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59

>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap Length = 64

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 61
          ++EY    +PY  T   +LTF + E+I++  KE     WW G +  + G+FP N+ V
Sbjct: 5  AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
          A + +  T   +L+  + ++IYVT+ +E  WW GT+  RTG FPSNYV
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 7  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          IA Y Y +    +L+F++ ++I V  K++ DWW G I   TGLFPSNYV
Sbjct: 38 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
          + A Y ++   P +L   + ++IY+T   + +WW GT   RTGL PSNYV      +D 
Sbjct: 17 FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDN 75

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 61
          A Y ++  +PGDL F   + I V  K +   DWW G +  +TG+FP+NYV 
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVV 61
          A Y YD+ +  +L+FN +++I + K++ + WWTG +  + GLFP+NYV 
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVV 61
          S + + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV 
Sbjct: 6  SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVV 61
          + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV 
Sbjct: 6  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQV 67
          Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P    V
Sbjct: 4  YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV 61

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P
Sbjct: 4  YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P
Sbjct: 5  ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 54

>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3 Length = 58

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 62
          EY  A Y +D  + GDL     D+V  + K   +W+ G+   RTG+FP+NYV P
Sbjct: 3  EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56

>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound With A Synthetic Peptide Length = 70

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
          A YP+ + +   L FN+++VI V ++++ WW G +  + G FP +YV
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYV 63

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          E  +A Y Y   +  +L+F +  +IYV KK +D W+ G +   TGLFP NYV
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69

>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + E  +E  +A Y Y    PG++T  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 1  MDETGKELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          S   Y+A Y +   E  DL     ++I + +  N DWW G I DR G FP+N+V
Sbjct: 6  SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
          Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV 
Sbjct: 4  YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55

>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States By Relaxation Dispersion Nmr Length = 62

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 11 YYIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
          +  A Y YD+ E  +LTF   D++I +   ++DWW G +      GLFPSNYV
Sbjct: 6  WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58

>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The Function Of Yeast Sh3 Domains Length = 59

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 11 YYIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
          +  A Y YD+ E  +LTF   D++I +   ++DWW G +      GLFPSNYV
Sbjct: 3  WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55

>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound To Cbl-B Peptide Length = 62

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
          YI  Y YD+    +LT    E+I   KK  E  W  G +  R G+FP N+V
Sbjct: 4  YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54

>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain Length = 57

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
          ++A Y Y+S    DL+F + E +  V   E DWW     T G RTG  PSNYV P
Sbjct: 3  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-RTGYIPSNYVAP 56

>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein Abp1 Sh3 Domain Length = 58

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 11 YYIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
          +  A Y YD+ E  +LTF   D++I +   ++DWW G +      GLFPSNYV
Sbjct: 2  WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12  YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
           ++A Y Y+S    DL+F + E +  V   E DWW     + G +TG  PSNYV P ++
Sbjct: 88  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTG-QTGYIPSNYVAPSDS 144

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
          A Y +++ E  +LTF   E+I V    + +WW G     TGLFPSN+V 
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58

>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of Cd2ap Length = 57

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
          YI  Y YD+    +LT    E+I   KK  E  W  G +  R G+FP N+V
Sbjct: 3  YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 53

>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The Distal Loop Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 6  ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          E  +E  +A Y Y    P ++T  + +++ +    N DWW   +GDR G  P+ YV
Sbjct: 3  ETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYV 58

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
          ++A Y Y+S    DL+F + E +  V   E DWW     T G +TG  PSNYV P ++
Sbjct: 6  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAPSDS 62

>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 1  MDETGKELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          I  + Y +    +LT +  E+I   +KE+  WW G I  R GLFP N+V
Sbjct: 5  IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P++YV
Sbjct: 1  MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYV 58

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          A Y +++ E  +LTF   E+I V    + +WW G      GLFPSN+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69

>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 1  MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYV 58

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
          A Y +++ E  +LTF   E+I V    + +WW G      GLFPSN+V 
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70

>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse Hypothetical Protein Sh3rf2 Length = 70

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIG---DRTGLFPSNYVVPYE 64
          S   ++A + Y +  P +L   + E I V  K  D W   +     RTG+FPS+YV+P  
Sbjct: 6  SGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
Query: 65 A 65
Sbjct: 66 G 66

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
          ++A Y Y++    DL+F++ E   +    E DWW     T G+ TG  PSNYV P ++
Sbjct: 6  FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 62

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
          ++A Y Y++    DL+F++ E   +    E DWW     T G+ TG  PSNYV P ++
Sbjct: 7  FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 63

>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 4. Length = 62

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 1  MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIG-DRTGLFPSNYVV 61
          +A Y Y +    +LT ++ ++I V  K+N DWW G+IG  + G FP+N+V 
Sbjct: 10 VALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
          ++A Y Y+S    DL+F + E +  V   E DWW        +TG  PSNYV P ++
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
          ++A Y Y+S    DL+F + E +  V   E DWW        +TG  PSNYV P ++
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold Determination For Small Well-Folded Proteins In Less Than A Day Length = 63

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 1  MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain Length = 62

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 1  MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
          ++A Y Y+S    DL+F + E +  V   E DWW        +TG  PSNYV P ++
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
          S++Y    +PY++    +LT  + +++ +  K+     WW G +  R G+FP N+V
Sbjct: 2  SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 57

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
          S++Y    +PY++    +LT  + +++ +  K+     WW G +  R G+FP N+V
Sbjct: 8  SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63

>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12 Length = 64

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
          ++A Y Y+S    DL+F + E +  V   E DWW     T G +TG  PSNYV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 63

>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain: Development Of A General Model For Sh3-Ligand Interactions Length = 64

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
          ++A Y Y+S    DL+F + E +  V   E DWW     T G +TG  PSNYV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 63

>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The Distal Loop Length = 62

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 6  ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV
Sbjct: 3  ETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYV 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-27
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	4e-22
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	5e-22
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	1e-21
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-21
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	2e-21
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	3e-21
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-21
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	3e-21
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	4e-21
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	4e-21
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	5e-21
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	5e-21
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	5e-21
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	6e-21
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-21
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	6e-21
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	7e-21
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	9e-21
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	9e-21
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	1e-20
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-20
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-20
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-20
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	2e-20
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-20
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-20
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	3e-20
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	3e-20
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-20
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	4e-20
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	5e-20
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	7e-20
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	9e-20
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	1e-19
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	1e-19
3u23_A	65	CD2-associated protein; structural genomics, struc	1e-19
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-19
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-19
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	1e-19
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	1e-19
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-19
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-19
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-19
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	2e-19
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	2e-19
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	2e-19
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-19
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	2e-19
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	2e-19
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	3e-19
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-19
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	3e-19
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	4e-19
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	4e-19
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	4e-19
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	4e-19
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	4e-19
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	4e-19
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	5e-19
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	5e-19
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	5e-19
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	6e-19
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	6e-19
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	6e-19
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	7e-19
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	7e-19
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	8e-19
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	1e-18
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	1e-18
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	2e-18
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	2e-18
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	2e-18
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-18
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-18
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-18
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	4e-18
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	6e-18
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	6e-18
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	6e-18
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	6e-18
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	7e-18
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	7e-18
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	8e-18
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	8e-18
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	1e-17
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-17
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	2e-17
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-17
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-17
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	2e-17
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-17
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-17
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	3e-17
1wxb_A	68	Epidermal growth factor receptor pathway substrate	4e-17
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	5e-17
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	5e-17
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	5e-17
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	7e-17
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	7e-17
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	8e-17
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	8e-17
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	9e-17
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	1e-16
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-16
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	1e-16
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	1e-16
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-16
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-16
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-16
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-16
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	2e-16
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-16
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	7e-16
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	4e-16
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	4e-16
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	5e-16
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	6e-16
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	6e-16
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	8e-16
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	8e-16
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	1e-15
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	1e-15
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-15
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	1e-15
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	1e-15
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-15
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-15
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	2e-15
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	2e-15
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	2e-15
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	3e-15
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	4e-15
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	5e-15
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	6e-15
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	7e-15
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	6e-10
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	7e-15
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	7e-15
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	8e-13
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	8e-15
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	8e-15
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-14
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	1e-14
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-14
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	1e-14
1i07_A	60	Epidermal growth factor receptor kinase substrate	3e-14
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	4e-14
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	6e-14
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	7e-14
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	1e-13
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-13
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-12
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-13
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	2e-13
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-13
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	3e-13
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-13
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	6e-13
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	7e-13
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	8e-13
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	9e-13
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	9e-13
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	1e-12
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	2e-12
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-12
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	2e-12
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	4e-09
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	2e-12
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	3e-12
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	4e-12
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	1e-11
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-11
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	2e-11
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	3e-11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-11
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	4e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	6e-11
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-10
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	3e-10
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	4e-10
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	7e-10
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-09
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	3e-09
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	4e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-09
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	6e-09
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-08
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	3e-08
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	7e-08
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	1e-05
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	4e-05

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 94.3 bits (235), Expect = 2e-27
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
            E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 7  GGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS 64

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 80.3 bits (199), Expect = 4e-22
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          EY  A Y +D  + GDL     + + + +K + +W+ G+   RTG+FP+NYV P
Sbjct: 3  EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 79.9 bits (198), Expect = 5e-22
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
           ++  A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY
Sbjct: 2  TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 79.2 bits (196), Expect = 1e-21
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVP 62
          ++EY    +PY  T   +LTF + E+I++  K   E  WW G +  + G+FP N+ V 
Sbjct: 5  AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 78.9 bits (195), Expect = 2e-21
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
           +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV   +
Sbjct: 4  GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 78.8 bits (195), Expect = 2e-21
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
          S   Y+A Y +   E  DL     ++I + +  N DWW G I DR G FP+N+V     
Sbjct: 6  SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSG 64

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 79.0 bits (195), Expect = 3e-21
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
              A Y ++  +PGDL F   + I V  K +   DWW G +  +TG+FP+NYV
Sbjct: 18 IEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 78.0 bits (193), Expect = 3e-21
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          Q        A + Y++T+P DL F + ++I V  K N +W  G    + G+FP  +V  
Sbjct: 1  QLKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 79.0 bits (195), Expect = 3e-21
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA 65
            Y IA   Y +     L+F++ ++I +      E  W  G+ G R+GLFP++ V P  A
Sbjct: 8  SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA 67

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 77.6 bits (192), Expect = 4e-21
 Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          S    +A Y +   E GDL F + +VI + KK   +NDWWTG +  R G+FP+NYV
Sbjct: 2  SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 77.7 bits (192), Expect = 5e-21
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
          S E ++A   Y +T+   L+F + E I + ++   DWW G      G  P+N+V  + 
Sbjct: 6  SGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 77.7 bits (192), Expect = 5e-21
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 4  LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
          + E  +E  +  Y Y    P +LT  + +++ +    N DWW   +  R G  P+ Y+  
Sbjct: 1  MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60

Query: 63 YE 64
           +
Sbjct: 61 LD 62

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 77.6 bits (192), Expect = 5e-21
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
           Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV  
Sbjct: 3  TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 77.8 bits (192), Expect = 6e-21
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYE 64
          S    +A Y + + +  +L+  + +V+ +  +   +  WW G    R G FPS YV    
Sbjct: 6  SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65

Query: 65 AQ 66
           Q
Sbjct: 66 IQ 67

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 77.8 bits (192), Expect = 6e-21
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 66
          S     A + + +    +L F   +VI V    N DWW G I D  G FP+++V  +  Q
Sbjct: 9  SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ 68

Query: 67 VDQQAD 72
           D+  +
Sbjct: 69 EDEVEE 74

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 77.3 bits (191), Expect = 7e-21
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          S +Y    +PY++    +LT  + +++ +  K   +  WW G +  R G+FP N+V
Sbjct: 6  SGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 77.5 bits (191), Expect = 9e-21
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 64
               +A Y Y++    DL+F + + + V ++  +WW        + G  PSNYV   +
Sbjct: 24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 82

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 77.3 bits (191), Expect = 9e-21
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          + +Y    +PY++    +LT  + +++ +  K   +  WW G +  R G+FP N+V
Sbjct: 1  ASDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 76.9 bits (190), Expect = 1e-20
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
          S + + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV     
Sbjct: 6  SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG 64

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 76.6 bits (189), Expect = 1e-20
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE 64
           +E Y+   PY S    ++ F +   + V +K    WW      + G  P++Y+   +
Sbjct: 7  GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAK 64

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 77.1 bits (190), Expect = 2e-20
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
           E  +E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV   
Sbjct: 13 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72

Query: 64 EA 65
           A
Sbjct: 73 AA 74

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 76.6 bits (189), Expect = 2e-20
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2  KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
            +  ++     A + +      +L F   +VI++  + N DW  GT+   TG+FP ++V
Sbjct: 11 HHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 70

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 75.7 bits (187), Expect = 2e-20
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 6  ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
           L      A Y YD+ +  +L+FN +++I + K+  + WWTG +  + GLFP+NYV
Sbjct: 2  PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 75.7 bits (187), Expect = 2e-20
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          S E+ IA + Y      +L+F +   + +  +   DWW G      GL P  Y+
Sbjct: 5  SPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 76.2 bits (188), Expect = 2e-20
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
                A   + + +   L F++ ++I V +++ +WW G +    G FP +YV
Sbjct: 9  ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYV 61

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 76.2 bits (188), Expect = 3e-20
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
            E  +A Y Y   +  +L+F +  +IYV KK ++ W+ G +   TGLFP NYV
Sbjct: 16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 75.6 bits (187), Expect = 3e-20
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          +      A + +      +L F   +VI++  + N DW  GT+   TG+FP ++V
Sbjct: 2  IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 76.7 bits (189), Expect = 3e-20
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
               IA Y Y +    +L+F++ ++I V  K + DWW G I   TGLFPSNYV
Sbjct: 33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 75.3 bits (186), Expect = 4e-20
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
           + + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV
Sbjct: 3  VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 76.0 bits (187), Expect = 5e-20
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
              Y A YP+++    +++FN  ++I V +K   E  W  G+     G FP NYV
Sbjct: 4  GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 74.9 bits (185), Expect = 7e-20
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          S     A   Y    PGDL FN+ +VI + ++ + +W+ G I   +G+FP++ V
Sbjct: 6  SGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 74.8 bits (184), Expect = 9e-20
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
              Y+    Y   +  +++F     + V +K E+ WW    G+  G  PS+Y+V  E +
Sbjct: 7  GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE 66

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 74.1 bits (183), Expect = 1e-19
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
           +  A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 2  RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 74.6 bits (184), Expect = 1e-19
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 65
          E Y+    Y   E  +L+    EV+ V +K E+ WW  +  +  G  P+ Y+    +
Sbjct: 9  EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 74.2 bits (183), Expect = 1e-19
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 65
           +      + Y      +L     ++I + ++ E  WW+GT+ ++ GLFPSN+V   E 
Sbjct: 6  KKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 74.7 bits (184), Expect = 1e-19
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
               +A + Y      +L+F + +V+ + ++  +DWW G      GL P  Y+      
Sbjct: 9  GVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGT 68

Query: 67 VDQQA 71
            Q  
Sbjct: 69 EKQVV 73

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 74.3 bits (183), Expect = 1e-19
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 3  SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
          S         IA + Y      +L+F +   + + ++ + DWW G      GL P  Y+V
Sbjct: 3  SGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62

Query: 62 PYE 64
            +
Sbjct: 63 VQD 65

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 74.8 bits (184), Expect = 1e-19
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
                   A Y +++ E  +LTF   E+I V    + +WW G      GLFPSN+V   
Sbjct: 13 NNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTN 72

Query: 64 EAQVDQQAD 72
               + A 
Sbjct: 73 LNIETEAAA 81

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 74.7 bits (184), Expect = 1e-19
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
           Q    A + +  T   +L+  + ++IYVT+  E  WW GT+  RTG FPSNYV
Sbjct: 9  HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 74.2 bits (183), Expect = 1e-19
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 2  KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + +  L Q    A Y ++    G+L F + ++I +T + + +W+ G +  ++G FP +YV
Sbjct: 6  EFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 73.8 bits (182), Expect = 1e-19
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
                A Y +++ E  +LTF   E+I V    + +WW G     TGLFPSN+V
Sbjct: 4  MARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 73.8 bits (182), Expect = 2e-19
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          S     A + + +    +L   + +++Y+ K+ + +W+ G    R G+FP  Y+
Sbjct: 6  SGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 73.8 bits (182), Expect = 2e-19
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          SQ    A + +  T   +L+F++ +VI+VT+  E  WW GT   RTG FPSNYV
Sbjct: 5  SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 73.5 bits (181), Expect = 2e-19
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVVP 62
          L     IA + Y+ +  GDL F + E + + ++  +WW        + G  P N+V  
Sbjct: 4  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 73.8 bits (182), Expect = 2e-19
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          S     A Y ++    G+L F + ++I +T + + +W+ G +   +G FP NYV
Sbjct: 6  SGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 73.9 bits (182), Expect = 2e-19
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          S++Y    +PY++    +LT  + +++ +  K   +  WW G +  R G+FP N+V
Sbjct: 8  SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 73.8 bits (182), Expect = 2e-19
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEA 65
          S      A+ Y      +L     ++I V  +  + WW G +  +TG+FPSN++     
Sbjct: 6  SGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 64

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 73.4 bits (181), Expect = 2e-19
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 62
          S E +   + +      +L      +++V KK ND W T     + GL P NY+ P
Sbjct: 6  SGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 74.0 bits (182), Expect = 3e-19
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQ 66
           +     A+ Y      +L     ++I V  +  + WW G +  +TG+FPSN++     +
Sbjct: 17 RRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGE 76

Query: 67 VDQQA 71
           D+  
Sbjct: 77 SDELG 81

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 73.4 bits (181), Expect = 3e-19
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYEA 65
          S EY  A + ++  +  DL F + +++ +  K    WW     + + G+ P  YV  Y  
Sbjct: 2  SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61

Query: 66 QVDQ 69
              
Sbjct: 62 HHHH 65

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 73.6 bits (181), Expect = 3e-19
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-----ENDWWTGTIGDRTGLFPSNYVVP 62
            + Y A Y + +  P +L+ + ++ + + +        +WW   +  + G  PSNY+  
Sbjct: 12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRK 71

Query: 63 YEA 65
           E+
Sbjct: 72 TES 74

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 73.1 bits (180), Expect = 4e-19
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
                A Y +++ E  +LTF   E+I V    + +WW G      GLFPSN+V
Sbjct: 16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 73.0 bits (180), Expect = 4e-19
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 60
          S    IA + ++     +++F + E I + ++ + +W+ G I    R G+FP  YV
Sbjct: 6  SGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 73.6 bits (181), Expect = 4e-19
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
               +Y  A   Y+ ++   L F ++++I +T K  EN W+ G +  + G FP ++V
Sbjct: 6  SPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 73.0 bits (180), Expect = 4e-19
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV---VP 62
          + Q      Y ++    G+L F + ++I +T + + +W+ G I   +G FP NYV   VP
Sbjct: 1  MDQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVP 60

Query: 63 YEAQVDQQ 70
           E      
Sbjct: 61 LEHHHHHH 68

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 73.1 bits (180), Expect = 4e-19
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYV 60
             +  A Y Y+     +L+F +  +I +  KEN     +W G    R G+FPS  V
Sbjct: 7  GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 73.7 bits (181), Expect = 4e-19
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
                  + Y +    +L+  +   + V +K +D WW G+   + G FPSNYV
Sbjct: 16 LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 73.1 bits (180), Expect = 5e-19
 Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 66
          S     A   ++  +  +L F ++++I +  +++   W G +    G FP+ +V   + +
Sbjct: 6  SGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER 65

Query: 67 VDQQA 71
            + +
Sbjct: 66 SKEYS 70

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 72.6 bits (179), Expect = 5e-19
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 62
                A + +  T   +L+F++ +VI+VT+  E  WW GT   RTG FPSNYV  
Sbjct: 3  LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 73.2 bits (180), Expect = 5e-19
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 64
          +     +A Y Y S  P DL+F + + + V ++  +WW        + G  PSNYV   +
Sbjct: 1  MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 72.6 bits (179), Expect = 6e-19
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQVD 68
                + Y      +L     ++I + ++  + WW+GT+ ++ GLFPSN+V   E +  
Sbjct: 2  RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61

Query: 69 QQ 70
            
Sbjct: 62 HH 63

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 72.7 bits (179), Expect = 6e-19
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 65
          + Y A Y Y +  P +L  +  +++ V  + E+ WWT     + G  P +Y+     
Sbjct: 9  QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG 65

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 72.8 bits (179), Expect = 6e-19
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          S     A Y + + +  +L   + +++ + +K E  WW G++  + G FP+ YV
Sbjct: 6  SGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 72.9 bits (179), Expect = 7e-19
 Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 2/62 (3%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVP 62
          + L  ++      Y S +     F + E + V   E  WW        R    P   V  
Sbjct: 13 EGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVAR 72

Query: 63 YE 64
            
Sbjct: 73 VS 74

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 72.3 bits (178), Expect = 7e-19
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
          +     IA Y + +T   +L+F + +++ V  +E D  W+   +  + G  P NY+
Sbjct: 7  VGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 72.3 bits (178), Expect = 8e-19
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 3  SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
          S +  + E YIA   + + + GDLTF + E++ V +K  + WW         GL P  Y+
Sbjct: 4  SHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63

Query: 61 VPYE 64
           PY 
Sbjct: 64 EPYS 67

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 71.9 bits (177), Expect = 1e-18
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV--VPYEAQ 66
          +     + + +  P +LT  + +++Y+ K+ + +W  G    R G+FP+NYV  +P E  
Sbjct: 2  KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLEHH 61

Query: 67 VDQQ 70
              
Sbjct: 62 HHHH 65

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 71.5 bits (176), Expect = 1e-18
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYVVP 62
          S   ++A + Y +  P +L   + E I V  K  D W  G   +  RTG+FPS+YV+P
Sbjct: 6  SGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.1 bits (177), Expect = 2e-18
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 3  SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNY 59
          + Q L     +A Y +      +L+F + E I + +K N +W+ G I    R G+FP++Y
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70

Query: 60 VVPYEAQVDQQAD 72
          V        +  D
Sbjct: 71 VQVSREPRLRLCD 83

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 72.0 bits (177), Expect = 2e-18
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
          +       Y YD+    +L+   DEVI V      ++DW  G  G++ G  P  Y+
Sbjct: 16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 71.0 bits (175), Expect = 2e-18
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 63
          EY  A + ++  +  DL F + +++ +  K E  WW     + + G+ P  YV  Y
Sbjct: 2  EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 71.1 bits (175), Expect = 2e-18
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 60
               IA + ++     +++F + E I + ++ + +W+ G I    R G+FP  YV
Sbjct: 5  FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 71.1 bits (175), Expect = 2e-18
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEA 65
            ++A Y + ++    L+  + E + V    ++  W      +  G  PS Y+ P  +
Sbjct: 6  NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVNS 63

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 70.8 bits (174), Expect = 3e-18
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV 60
           A Y   +  P +L+F + +++ V ++     + WW  ++  R G+ P N +
Sbjct: 7  KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRL 58

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 70.3 bits (173), Expect = 4e-18
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
               A Y YD+    +LTF + + I V +K    WW G +  + G  P+NYV
Sbjct: 3  GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 69.9 bits (172), Expect = 6e-18
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQVD 68
           YI  Y YD+    +LT    E+I   KK  +  W  G +  R G+FP N+V   + + +
Sbjct: 3  DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRETE 62

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 70.6 bits (173), Expect = 6e-18
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 60
          +   + A + Y++    +LT  + + + V  +      +  WWTG +   R G+FPSNYV
Sbjct: 28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87

Query: 61 VP 62
           P
Sbjct: 88 AP 89

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 70.0 bits (172), Expect = 6e-18
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 3  SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYV 60
          S+     +  +A Y Y      DL   + +  ++ ++ N  WW     + + G  PSNYV
Sbjct: 2  SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61

Query: 61 VPYE 64
             E
Sbjct: 62 TEAE 65

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 72.0 bits (176), Expect = 6e-18
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEA 65
          +     A Y + + +  +L+  + ++I +  K+    WW G I  R G FPSNYV    +
Sbjct: 4  TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63

Query: 66 Q 66
          +
Sbjct: 64 E 64

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 70.0 bits (172), Expect = 7e-18
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 64
              ++A Y Y++    DL+F++ E   +      DWW         TG  PSNYV P +
Sbjct: 14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 69.6 bits (171), Expect = 7e-18
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-----RTGLFPSNYV 60
          +A +PY S    DL F +D+ I VT  E+  W+ G   D       G+FP ++V
Sbjct: 11 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 69.6 bits (171), Expect = 8e-18
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
               IA Y Y +    +++F+ D++I   +  +  WW G    R GLFP+NYV
Sbjct: 8  LGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 69.5 bits (171), Expect = 8e-18
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          I  + Y +    +LT +  E+I   +KE+  WW G I  R GLFP N+V
Sbjct: 5  IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 69.2 bits (170), Expect = 1e-17
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-TGLFPSNYVVPYEA 65
          S     A Y Y +    +LTF +  +I+   KE   WW G  G R    FPSNYV     
Sbjct: 6  SGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG 65

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 69.8 bits (171), Expect = 1e-17
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-----TGLFPSNYV 60
          S E       Y ++    L+    ++I + KK    WW G +  R      G FP+++V
Sbjct: 6  SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 69.3 bits (170), Expect = 2e-17
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
           +A Y Y +    +++F+ D++I   +  +  WW G    R GLFP+NYV
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 69.0 bits (169), Expect = 2e-17
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQQA 71
              PY +    ++T  + +++ +    N DWW   + DR G  P+ YV   ++   ++ 
Sbjct: 4  PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 68.8 bits (169), Expect = 2e-17
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 62
          S   Y A Y Y      +L   + + + V ++ +D W+ G      + G FP NYV P
Sbjct: 6  SGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 68.9 bits (169), Expect = 2e-17
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNYVVPYE 64
             Y   +    +LTF + EVI VT +E+ +WW G I    +R G+FP ++V    
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 68.6 bits (168), Expect = 2e-17
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW------TGTIGDRTGLFPSNYVV 61
              Y+  + + S    +L+F   +V +V +KE  WW              G  P NY+ 
Sbjct: 9  LGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68

Query: 62 PYE 64
            E
Sbjct: 69 ERE 71

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 68.5 bits (168), Expect = 2e-17
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWW--------TGTIGDRTGLFPSNY 59
          +E  +A Y Y    P ++T  + +++ +    N DWW         G   +R G  P+ Y
Sbjct: 1  KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60

Query: 60 VVPYE 64
          V   +
Sbjct: 61 VKKLD 65

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 68.1 bits (167), Expect = 3e-17
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 3  SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVV 61
           L   + ++ +  Y + +    +L+  Q +V+ V      WW       + G  P N + 
Sbjct: 2  PLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILT 61

Query: 62 PYEA 65
          PY A
Sbjct: 62 PYPA 65

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.0 bits (167), Expect = 4e-17
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPY 63
          S +Y    Y + +    +L+  +DEV+ V +    WW   +   + G  P N +   
Sbjct: 6  SGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 67.7 bits (166), Expect = 5e-17
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
                A Y   +    +L+F    V        +  W  GT+  +TGL P NYV
Sbjct: 9  PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 67.7 bits (166), Expect = 5e-17
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV 60
          S     A Y        +L F++ +++ + ++       WW   +  R GL P+N +
Sbjct: 6  SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 68.2 bits (167), Expect = 5e-17
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG--TIGDRTGLFPSNYVVPYE 64
              ++A Y Y++T   DL+F++ E   + +    DWW         TG  PSNYV P +
Sbjct: 5  GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 67.4 bits (165), Expect = 7e-17
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVP 62
          +    +A Y Y +    +LT ++ ++I V  K   DWW G+IG  + G FP+N+V  
Sbjct: 5  TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 67.2 bits (165), Expect = 7e-17
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYV 60
           +    A + Y +    +LTF +  +I   +K++  WW G  G +  L FPSNYV
Sbjct: 2  FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 67.3 bits (165), Expect = 8e-17
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYVVPYEA 65
           +    A + Y +    +LTF +  +I   +K+   WW G  G +  L FPSNYV     
Sbjct: 5  FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64

Query: 66 QVDQQAD 72
                D
Sbjct: 65 PEGIHRD 71

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 67.3 bits (165), Expect = 8e-17
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYVVPYE 64
          S    IA Y +  T   DL F + +V+ +     D  W+       R G+ P+NYV   E
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69

Query: 65 A 65
           
Sbjct: 70 G 70

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 67.5 bits (165), Expect = 9e-17
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          I      + +   L     +++ VT+   N  W G +  R GLFP  +V
Sbjct: 22 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 70

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 67.5 bits (165), Expect = 1e-16
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPSNYVVPYEA 65
                YP+ S    +L F + E + V +K   + +WW       + GL P NYVV    
Sbjct: 18 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 77

Query: 66 QVDQQA 71
                
Sbjct: 78 GPALHP 83

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 67.0 bits (164), Expect = 1e-16
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 3  SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          S     +      +     +   L   + ++I +  K     W G + ++ G F   YV
Sbjct: 5  SSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYV 63

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 67.1 bits (164), Expect = 1e-16
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG---------TIGDRTGLFPS 57
          S +Y++A + Y +    DL+F   + + V    +  WW                 G  PS
Sbjct: 6  SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65

Query: 58 NYVVPYE 64
          NYV    
Sbjct: 66 NYVAEDS 72

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 68.2 bits (166), Expect = 1e-16
 Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 9   QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYV 60
           + + +A Y +  +    L+    +V+ + +   DW+ G +       G+FP +++
Sbjct: 59  ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFI 113

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 66.0 bits (162), Expect = 2e-16
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
          A Y Y++    +++ +  ++I V + ++   W  G      GLFP++Y 
Sbjct: 5  AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 66.1 bits (162), Expect = 2e-16
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 64
           E  +A Y + +TE  DL   + +   + +K +  WW         G  PSNYV   +
Sbjct: 2  SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 66.2 bits (162), Expect = 2e-16
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 22 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
           P ++T  + +++ +    N DWW   + DR G  P+ YV   ++
Sbjct: 2  GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS 46

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 66.4 bits (162), Expect = 2e-16
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 22 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQQA 71
           P ++T  + +++ +    N DWW   + DR G  P+ YV   ++   ++ 
Sbjct: 4  GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 54

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 66.2 bits (162), Expect = 2e-16
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPSNYVVPYE 64
                YP+ S    +L F + E + V +K   + +WW       + GL P NYVV   
Sbjct: 7  HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 68.9 bits (168), Expect = 3e-16
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVD 68
          + Y A   Y+ T   ++  +  +V+ V +K E+ WW   +  + G  P++++ P ++  +
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71

Query: 69 QQADLIRCTCQVY 81
           +        + Y
Sbjct: 72 TEDPEPNYAGEPY 84

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 67.7 bits (165), Expect = 7e-16
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 10  EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVD 68
           E Y+A   Y + E  +++  + E + V  K  + WW     D TG FPS Y+      V 
Sbjct: 82  EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVS 141

Query: 69  QQA 71
           Q  
Sbjct: 142 QAQ 144

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 65.9 bits (161), Expect = 4e-16
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 2  KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNY 59
          + L E  +   IA Y Y + +P +L   ++E   +       WW     +   G  PS+Y
Sbjct: 12 RPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSY 71

Query: 60 VVPYEAQVDQQAD 72
          +V       +  +
Sbjct: 72 LVEKSPNNLETYE 84

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 64.9 bits (159), Expect = 4e-16
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNYV 60
          +  A Y YD+ E  +LTF +++ I   +  + DWW G +      GLFPSNYV
Sbjct: 2  WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 64.9 bits (159), Expect = 5e-16
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 60
           A Y YD  E  +L+F   + +    +  E  W  G +   + GL+P+NYV
Sbjct: 7  RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 65.6 bits (160), Expect = 6e-16
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 2  KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYV 60
          K+L    +   IA + Y + +  +L   ++E +++      WW      +RTG  PSNYV
Sbjct: 24 KNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYV 83

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 65.0 bits (159), Expect = 6e-16
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPY 63
          S       Y +++  P +LT  Q E + V      WW       R+G  PSN + P 
Sbjct: 6  SGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 64.7 bits (158), Expect = 8e-16
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 13 IAAYPYDS--TEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEA 65
           A YPYD+   +  +++F Q+E++ V+  E  WW     +  TG+ PSNYV   + 
Sbjct: 9  KALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQLIDG 64

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 64.2 bits (157), Expect = 8e-16
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 12 YIAAYPYD-STEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVPY 63
          + AAY +  S  P +L   + +VIY+T++E   W  G +  G + G  P+ Y+ P+
Sbjct: 3  FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 64.7 bits (158), Expect = 1e-15
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 64
             + A Y Y++    DL+F++ E   +      DWW         TG  PS Y+ P +
Sbjct: 5  STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 64.2 bits (157), Expect = 1e-15
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 7  LSQE-YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYE 64
          +++E   IA + Y + +  +L   ++E +++      WW      +RTG  PSNYV    
Sbjct: 1  MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKL 60

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 64.3 bits (157), Expect = 1e-15
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 8  SQEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSN 58
          S    +A Y YD  E         +LTF   ++I V  +  E+ ++ G +  + GL PSN
Sbjct: 6  SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSN 65

Query: 59 YV 60
          ++
Sbjct: 66 FL 67

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 63.8 bits (156), Expect = 1e-15
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 6  ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 62
          E  ++ + A + +      +L    D+ + V  +  D W+          G+FP+ Y + 
Sbjct: 3  EEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 62

Query: 63 YEAQVDQQA 71
             + +  A
Sbjct: 63 VTKEPEHMA 71

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 64.2 bits (157), Expect = 1e-15
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYE 64
           +   +A + Y + +  +L   ++E +++      WW      ++TG  PSNYV    
Sbjct: 6  EEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN 63

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 63.9 bits (156), Expect = 2e-15
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 2  KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNY 59
          +S QE  +   IA Y Y + +P +L    DE  Y+       WW     +   G  PS+Y
Sbjct: 13 RSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSY 72

Query: 60 V 60
          +
Sbjct: 73 L 73

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 64.8 bits (158), Expect = 2e-15
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVV 61
                 ++A Y Y++    DL+F + E   +    E DWW        ++G  PSNYVV
Sbjct: 23 LTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVV 82

Query: 62 PYE 64
          P +
Sbjct: 83 PAD 85

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 63.5 bits (155), Expect = 2e-15
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQA 71
          I      + +   L     +++ VT+   N  W G +  R GLFP  +V  ++ Q   + 
Sbjct: 7  IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPDEN 66

Query: 72 D 72
          +
Sbjct: 67 E 67

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 63.5 bits (155), Expect = 2e-15
 Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 12 YIAAYPYD-STEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYE 64
          + AAY +  S    +L   + +++++++   + W    +  G + G  P+ Y+ PY+
Sbjct: 5  FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 63.4 bits (155), Expect = 2e-15
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD--RTGLFPSNYV 60
          +   Y A Y Y + +  +++F   + I   +  ++ W  GT+    RTG+ P+NY+
Sbjct: 5  NLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 63.6 bits (155), Expect = 3e-15
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 1  MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD--RTGLFP 56
          M + +       I    +   +PG+L F + +V+ + +   +  W+        + GL  
Sbjct: 9  MPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLA 68

Query: 57 SNYVVPYEA 65
          +  +     
Sbjct: 69 AGALRERSG 77

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 63.5 bits (155), Expect = 3e-15
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
                + + +  ++T  Q +V+ V ++E+ W  G       TG FP ++ 
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFA 70

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 62.6 bits (153), Expect = 4e-15
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVP 62
           E  I  Y + +    +LT    + +Y+   KK  DWW   + D  ++GL P+ ++ P
Sbjct: 2  MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 62.7 bits (153), Expect = 5e-15
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYV 60
           +  +A Y ++     +L   + ++++++ K    W       G +TGL P  +V
Sbjct: 5  NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 63.4 bits (154), Expect = 6e-15
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 3  SLQELSQEYYIAAYPYDSTEP--------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRT 52
            +EL    ++A + YD             +L F + ++I V      + ++ G    R 
Sbjct: 11 GAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARL 70

Query: 53 GLFPSNYVVPYEAQVDQQAD 72
          GL P N V   +A  ++  D
Sbjct: 71 GLIPCNMVSEIQADDEEMMD 90

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 66.9 bits (162), Expect = 7e-15
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 11  YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
             I     ++ +   L     E++ VTK      W G    + G FP  +V   + Q  +
Sbjct: 241 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPE 300

Query: 70  QAD 72
           +  
Sbjct: 301 EDF 303

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 53.0 bits (126), Expect = 6e-10
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 8   SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYE 64
             EY  A + ++  +  DL F + +++ +  K E  WW     + + G+ P  YV  Y 
Sbjct: 133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR 191

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 61.8 bits (151), Expect = 7e-15
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 62
          S++ + A + +      +L    D+ + V  +  D W+          G+FP+ Y + 
Sbjct: 2  SEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 66.8 bits (162), Expect = 7e-15
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 8   SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
             E  +  + +      DL F Q E + +  K   DWW        TGL P+NYV
Sbjct: 146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 200

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 61.0 bits (147), Expect = 8e-13
 Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 12  YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
                  ++ +P  L   + + + VT+K ++  +   +  + G  P  Y+
Sbjct: 252 VTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYL 301

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 61.8 bits (151), Expect = 8e-15
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYV 60
          +  +A Y ++     +L   + ++++++ K    W       G +TGL P  +V
Sbjct: 2  QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 61.9 bits (151), Expect = 8e-15
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVPY 63
          S++  I  Y + +    +LT    + +Y+   KK  DWW   + D  ++GL P+ ++ P 
Sbjct: 5  SKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64

Query: 64 E 64
           
Sbjct: 65 R 65

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 61.9 bits (151), Expect = 1e-14
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
          I     ++ +   L     E++ VTK   +  W G    + G FP  +V
Sbjct: 12 IQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 66.6 bits (161), Expect = 1e-14
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 8   SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
           +     A + +      +L F   +VI++  + N DW  GT+   TG+FP ++V
Sbjct: 173 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 226

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 64.0 bits (155), Expect = 1e-14
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 3   SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
           + ++   E  +  + +      DL F Q E + +  K   DWW        TGL P+NYV
Sbjct: 112 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 171

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 61.6 bits (150), Expect = 1e-14
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 8  SQEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSN 58
          S +  IAA  YD  +        G L     +V+ V    +D  ++ G +G   GL P++
Sbjct: 6  SGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAH 65

Query: 59 YV 60
           +
Sbjct: 66 LL 67

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 60.3 bits (147), Expect = 3e-14
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEAQ 66
          ++Y  + Y + +    +L+  +D+V+ +      WW        +G  P+N +      
Sbjct: 1  KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTP 59

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 61.0 bits (148), Expect = 4e-14
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 2  KSLQELSQEYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTG 53
          + +     E+  A Y +    P  ++   + +++ +  K      ++DWW     +   G
Sbjct: 7  EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66

Query: 54 LFPSNYVVPYEAQVDQQA 71
            P NY+   + +   + 
Sbjct: 67 YIPYNYIEIIKRRKKIEH 84

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 59.8 bits (145), Expect = 6e-14
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD----RTGLFPSNYVVPY 63
          ++ Y++   Y+  E     F +   + V ++  N WW   I D      G  PSNY+   
Sbjct: 10 KDVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK 68

Query: 64 EA 65
           +
Sbjct: 69 NS 70

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 60.6 bits (147), Expect = 7e-14
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 1  MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-----WWTGTIGD--RTG 53
           + ++  + E     YPY      +L     + I+++  E       W  GT      +G
Sbjct: 8  SRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSG 67

Query: 54 LFPSNYVVP 62
          L P NY+  
Sbjct: 68 LLPENYITK 76

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 59.8 bits (145), Expect = 1e-13
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-----DWWTGTI-GDRTGLFPSNYV 60
            A Y + +    +++F   +++ +  KE       W   ++ G  TGL P+NYV
Sbjct: 20 ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYV 74

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 62.4 bits (151), Expect = 1e-13
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQ 66
           IA Y + +T   +L+F + +++ V  +E D  W+   +  + G  P NY+      
Sbjct: 3  AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHP 59

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 58.5 bits (141), Expect = 3e-12
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 8   SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
              Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P  
Sbjct: 157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN 214

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 59.3 bits (144), Expect = 1e-13
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 2  KSLQELSQEYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK------ENDWWTGTIGD-RTG 53
          + +     E+  A Y +    P  ++   + +++ +  K      ++DWW     +   G
Sbjct: 7  EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66

Query: 54 LFPSNYV 60
            P NY+
Sbjct: 67 YIPYNYI 73

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 58.8 bits (143), Expect = 2e-13
 Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
          S  + +A Y ++ +  G ++  + E + + +++    W      +   G  P++Y+
Sbjct: 6  SGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 59.7 bits (144), Expect = 2e-13
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 10  EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGT----------IGDRTG 53
               A + Y +T+  +L     +V+ V   +N       W  G           +    G
Sbjct: 45  FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 104

Query: 54  LFPSNYVVPYE 64
           +FP N+    +
Sbjct: 105 VFPENFTERVQ 115

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 58.2 bits (141), Expect = 3e-13
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 5  QELSQEYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFP 56
                +  A Y +    P  ++   + +++ +  K      ++DWW     +   G  P
Sbjct: 3  HHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIP 62

Query: 57 SNYV 60
           NY+
Sbjct: 63 YNYI 66

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 57.3 bits (139), Expect = 5e-13
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 14 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPYE 64
            +P+   +    L+F Q +VI +   E    W  G        G FPS+Y    E
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 57.4 bits (139), Expect = 6e-13
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 8  SQEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVP 62
          S +     +P+ +      L+F Q +V+ +   E    W  G        G FPS+Y   
Sbjct: 6  SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

Query: 63 YE 64
            
Sbjct: 66 LS 67

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 57.1 bits (138), Expect = 7e-13
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
              + Y +    +L+      + V +  +D WW G+   + G FPSNYV
Sbjct: 4  AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 56.9 bits (138), Expect = 8e-13
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 8  SQEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPY 63
          S     A  PY      D ++F + ++  V  + E+ W   T    D  GL   + V   
Sbjct: 6  SGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65

Query: 64 E 64
           
Sbjct: 66 S 66

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 57.2 bits (138), Expect = 9e-13
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 11 YYIAAYPY-DSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNYV 60
             A   + +  +P  L     +VI V ++  +  W G I       DR G FP   V
Sbjct: 20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 56.9 bits (138), Expect = 9e-13
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 8  SQEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVP 62
           +    A + + + +    L+F + ++I +   E    W  G        G FP +Y   
Sbjct: 6  GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

Query: 63 YE 64
           +
Sbjct: 66 LD 67

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 60.9 bits (146), Expect = 1e-12
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 9   QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 60
           +    A Y Y+  E  +L+F   + +   +   E  W  G + + + GL+P+NYV
Sbjct: 428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 57.5 bits (139), Expect = 2e-12
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYV 60
          Y I  Y + + +  +LT    E +++    N +W+      R    GL P  +V
Sbjct: 7  YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 58.9 bits (142), Expect = 2e-12
 Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD---RTGLFPSNYVVPYEA 65
          + + +A Y +  +    L+    +V+ + +   DW+ G +       G+FP +++   E 
Sbjct: 17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEV 76

Query: 66 QVDQQ 70
           V+++
Sbjct: 77 TVEKR 81

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 60.0 bits (144), Expect = 2e-12
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 1   MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY 59
             +         I      + +   L     +++ VT+   N  W G +  R GLFP  +
Sbjct: 231 PSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTH 290

Query: 60  VVPYEAQVDQQAD 72
           V  ++ Q   + +
Sbjct: 291 VKIFDPQNPDENE 303

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 50.8 bits (120), Expect = 4e-09
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 11  YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
           Y    Y +   +  DL F + E++ + +K E  WW+    D R G+ P  YV
Sbjct: 127 YVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYV 178

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 56.2 bits (135), Expect = 2e-12
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWWTG--TIGDRTGLFPSNYVVPY 63
          Y    P      G L  N  +++ +TK E  ++WW G  T  +  G FP N V PY
Sbjct: 21 YYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY 76

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 56.9 bits (137), Expect = 3e-12
 Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYV 60
          ++  + +  Y + +    +L  +  E + +    + +W+     +R    GL P +YV
Sbjct: 1  MAPLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 55.4 bits (134), Expect = 4e-12
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 60
             Y Y +++P +LT  + EV+ V +     DW        + G  P  Y+
Sbjct: 17 KVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 54.6 bits (132), Expect = 1e-11
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 14 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
            Y +       +LT  + E+I VT       W  G       GL P++YV
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 54.5 bits (131), Expect = 2e-11
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 11 YYIAAYPYDSTE------PGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
            +A Y Y+  +        +L     + +YV    ++  ++ G + D + GL PSN+V
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFV 77

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 53.2 bits (128), Expect = 2e-11
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 9  QEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVP 62
          +    A  PY      D ++F + ++  V  + E+ W   T    D  GL   + V  
Sbjct: 5  RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 52.6 bits (127), Expect = 3e-11
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWT---GTIGDRTGLFPSNYV 60
            Y Y   +  ++T    + I +  ++    WT         TGL P+ Y+
Sbjct: 6  VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 5   QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVP 62
            E     ++A Y + ++    L+  + E + V    ++  W      +  G  PSNY+ P
Sbjct: 39  SENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 98

Query: 63  YE 64
             
Sbjct: 99  VN 100

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 52.7 bits (126), Expect = 4e-11
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%)

Query: 1  MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG--TIGDRTGLFP 56
          M+  QE     Y    P        L  N  +++ +TK E +  WW G  T  +  G FP
Sbjct: 7  MEVFQE-----YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFP 61

Query: 57 SNYVVPY 63
           N V PY
Sbjct: 62 CNRVHPY 68

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 55.9 bits (135), Expect = 6e-11
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWT--GTIGDRTGLFPSNYVVPYE 64
           +A Y Y++    DL+F + + + V ++  +WW        + G  PSNYV   +
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 65

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 53.7 bits (128), Expect = 3e-10
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 16  YPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGD-RTGLFPSNYVVPYE 64
           + ++  +  DL F + +++ +  K E  WW     + + G+ P  YV  Y 
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR 193

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 53.2 bits (126), Expect = 3e-10
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 16/75 (21%)

Query: 4   LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGD------- 50
           L         A + Y +T+  +L     +V+ V   +N       W  G           
Sbjct: 137 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKK 196

Query: 51  ---RTGLFPSNYVVP 62
                G+FP N+   
Sbjct: 197 LEKCRGVFPENFTER 211

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 50.1 bits (120), Expect = 4e-10
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI 48
           +E  +A Y Y    P ++T  + +++ +    N DWW   +
Sbjct: 20 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 50.8 bits (121), Expect = 7e-10
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 16/83 (19%)

Query: 13  IAAYPYDSTEPGDLTFNQDEVIYVTKKE----NDWWTGTIGD--------RTGLFPSNYV 60
           +A   Y + +   LT ++ +V+YV  K       +W G++          R G FPS+ V
Sbjct: 26  VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 85

Query: 61  ----VPYEAQVDQQADLIRCTCQ 79
                    +VD + D     CQ
Sbjct: 86  REDQTLKPGKVDVKTDKWDFYCQ 108

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 2  KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
          + + + S     A + + + +  +L F   +VI V    N +WW G + D  G FP+++V
Sbjct: 23 ELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82

Query: 61 VPYEAQVDQQAD 72
               Q +   D
Sbjct: 83 RLRVNQDEPADD 94

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 48.4 bits (115), Expect = 3e-09
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE-----NDWWTGTIGDRTGLFPSNYVVPYEAQ 66
          + A   +++ +  D++  + +++ V KK+      + W    G   G   S+++ PY  +
Sbjct: 20 FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR 79

Query: 67 VDQQA 71
               
Sbjct: 80 RSHSD 84

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 48.1 bits (114), Expect = 4e-09
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 18/67 (26%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------WWTGTIG--DRTG 53
          Y A YP+    P DL     +V+ V++                    W  G      + G
Sbjct: 14 YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 73

Query: 54 LFPSNYV 60
           FP  YV
Sbjct: 74 DFPGTYV 80

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 64
          ++A Y Y+S    DL+F + E + +    E DWW        +TG  PSNYV P +
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 50.0 bits (120), Expect = 6e-09
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYV--TKKENDWW-----TGTIGDRTGLFPS 57
             S    IA Y +  T   DL F + +V+ +    K+ +W+      G    R G+ P+
Sbjct: 7  SWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG----REGIIPA 62

Query: 58 NYVVPYE 64
          NYV   E
Sbjct: 63 NYVQKRE 69

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 12  YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 64
           ++A Y Y+S    DL+F + E + +    E DWW        +TG  PSNYV P +
Sbjct: 88  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 47.8 bits (113), Expect = 3e-08
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVP 62
            L     IA + Y+ +  GDL F + E + + ++  +WW        + G  P N+V  
Sbjct: 8  SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 67

Query: 63 Y 63
           
Sbjct: 68 A 68

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
            I  Y Y +    +L F++ ++I V  KE+ DWW G +  + GLFPSNYV         
Sbjct: 4  QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPS 63

Query: 70 QADLIRCTC 78
          Q        
Sbjct: 64 QQWCSDLHL 72

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 9   QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYVVP 62
               IA Y +      ++     ++I V     D +  G      RTGL+PS  V  
Sbjct: 442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 37.8 bits (87), Expect = 4e-05
 Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 18/67 (26%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------WWTGTI--GDRTG 53
          Y A Y Y      D+  +  +++ V K                    W  G        G
Sbjct: 8  YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67

Query: 54 LFPSNYV 60
           FP  YV
Sbjct: 68 DFPGTYV 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.75
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.74
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.72
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.72
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.71
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.7
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.7
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.7
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.7
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.7
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.69
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.69
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.69
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.69
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.69
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.69
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.69
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.69
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.68
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.68
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.68
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.68
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.68
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.68
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.68
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.68
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.68
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.68
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.68
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.68
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.68
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.67
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.67
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.67
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.67
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.67
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.67
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.67
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.67
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.67
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.67
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.67
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.66
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.66
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.66
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.66
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.66
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.66
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.66
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.66
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.66
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.66
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.66
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.66
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.66
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.66
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.66
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.66
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.66
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.65
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.65
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.65
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.65
3u23_A	65	CD2-associated protein; structural genomics, struc	99.65
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.65
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.65
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.65
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.65
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.65
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.65
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.65
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.65
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.65
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.65
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.65
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.65
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.65
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.65
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.65
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.65
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.65
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.65
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.65
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.64
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.64
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.64
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.64
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.64
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.64
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.64
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.64
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.64
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.64
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.64
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.64
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.64
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.64
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.64
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.64
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.64
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.63
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.63
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.63
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.63
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.63
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.63
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.63
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.63
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.63
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.63
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.63
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.63
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.63
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.63
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.63
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.63
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.62
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.62
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.62
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.62
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.62
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.61
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.61
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.61
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.61
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.61
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.61
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.61
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.61
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.61
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.61
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.61
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.6
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.6
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.6
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.6
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.6
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.6
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.6
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.6
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.6
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.59
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.59
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.59
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.58
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.58
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.58
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.58
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.57
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.57
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.56
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.56
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.55
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.54
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.54
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.54
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.54
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.53
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.53
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.52
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.52
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.5
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.5
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.49
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.49
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.46
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.46
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.46
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.46
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.44
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.44
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.44
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.42
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.41
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.39
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.38
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.37
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.36
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.35
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.34
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.33
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.33
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.32
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.3
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.28
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.28
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.27
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.26
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.24
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.24
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.23
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.85
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.2
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.19
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.15
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.76
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.08
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.06
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	99.02
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.99
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.86
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.85
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.78
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.77
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.7
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.55
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.55
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.54
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.47
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.43
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.29
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.89
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.67
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	97.18
2kt8_A	76	Probable surface protein; SH3 family, structural g	97.05
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	96.22
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	95.15
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	91.79
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	88.25
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	87.26
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	83.22
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	80.42

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.75  E-value=1.6e-18  Score=88.96  Aligned_cols=55  Identities=27%  Similarity=0.628  Sum_probs=49.8

Q ss_pred             ccEEEEeccCCCCCCCC-ceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~-l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~   63 (95)
                      +..++|+|||.++.+++ |+|++||+|.|+.+ +++||.|++ +|+.|+||++||+.+
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            46799999999998887 99999999999988 789999997 789999999999864

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.74  E-value=1.9e-17  Score=86.27  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=50.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ...++|+|||.++.+++|+|++||+|.|+.. +++||.|++  +|+.|+||++||+++
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            3578999999999999999999999999998 889999996  789999999999876

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=6e-17  Score=84.99  Aligned_cols=61  Identities=33%  Similarity=0.709  Sum_probs=55.2

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ......++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++.+|+.|+||++|++.+..+
T Consensus         4 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            4 GSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CSCCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CCCCCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            3445689999999999999999999999999998 899999999999999999999988643

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1e-16  Score=84.97  Aligned_cols=61  Identities=23%  Similarity=0.537  Sum_probs=54.9

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ......++|+|+|.++.+++|+|++||+|.|+.. +.+||.++.+|+.|+||.+||+.+...
T Consensus         6 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            6 SGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             SCSCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCCCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            3445689999999999999999999999999998 789999999999999999999987643

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=8.8e-17  Score=84.33  Aligned_cols=59  Identities=24%  Similarity=0.448  Sum_probs=54.0

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.++.+++|+|++||+|.|+.. +++||.++.+|+.|+||++||+.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            5 SSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             CCSEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCC
T ss_pred             CCCCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCC
Confidence            445689999999999999999999999999988 78999999999999999999998763

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.6e-16  Score=85.02  Aligned_cols=61  Identities=21%  Similarity=0.544  Sum_probs=54.7

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ......++|+|+|.++.+++|+|++||+|.|+.. +.+||.++.+|+.|+||.+||+.+...
T Consensus         7 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (76)
T 2epd_A            7 GEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGT   68 (76)
T ss_dssp             SSCCEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSC
T ss_pred             CCCCEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCC
Confidence            3344679999999999999999999999999998 899999999999999999999987643

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.70  E-value=1e-16  Score=83.48  Aligned_cols=58  Identities=24%  Similarity=0.623  Sum_probs=52.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      ..++|+|+|.++.+++|+|++||+|.|+.. +++||.|+.+|+.|+||++|++.+..+.
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~   60 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLEH   60 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC-
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCCC
Confidence            468999999999999999999999999998 7999999999999999999999876443

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.70  E-value=1.8e-16  Score=84.26  Aligned_cols=58  Identities=16%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             CccEEEEeccCCCC--CCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDST--EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~--~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.+.  .+++|+|++||+|.|+.. +.+||.++.+|+.|+||++||+.+..
T Consensus         8 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   68 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSS   68 (73)
T ss_dssp             CSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCC
T ss_pred             cceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCC
Confidence            34579999999975  999999999999999998 88999999999999999999998763

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.70  E-value=2.1e-16  Score=82.79  Aligned_cols=59  Identities=20%  Similarity=0.556  Sum_probs=54.1

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+..+++|+|.+||+|.|+.. +.+||.++.+|+.|+||.+|++.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl3_A            5 SSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSG   64 (68)
T ss_dssp             CCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCS
T ss_pred             CCCcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCC
Confidence            445689999999999999999999999999998 88999999999999999999998753

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.70  E-value=1.3e-16  Score=81.70  Aligned_cols=57  Identities=37%  Similarity=0.834  Sum_probs=52.2

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .....++|+|+|.++.+++|+|.+||++.++.. +++||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCCcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            345679999999999999999999999999998 789999999999999999999753

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.69  E-value=2.6e-16  Score=82.47  Aligned_cols=59  Identities=31%  Similarity=0.627  Sum_probs=53.7

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+..+++|+|++||+|.|+.. +.+||.++.+|+.|+||.+|++.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            5 SSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG   64 (68)
T ss_dssp             SSCCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCS
T ss_pred             CCceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCC
Confidence            345689999999999999999999999999998 89999999999999999999987653

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.69  E-value=1.4e-16  Score=81.61  Aligned_cols=55  Identities=25%  Similarity=0.562  Sum_probs=51.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ...++|+|+|.++.+++|+|.+||++.++.. +++||.|+.+|+.|+||++|++.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            4579999999999999999999999999998 899999999999999999999865

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=3e-16  Score=84.73  Aligned_cols=61  Identities=25%  Similarity=0.519  Sum_probs=54.7

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++..++.|+||++|++.+....
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   67 (80)
T 2ekh_A            6 SGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ   67 (80)
T ss_dssp             CSCEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCCC
T ss_pred             CCCCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCCC
Confidence            345679999999999999999999999999998 7899999999999999999999876433

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.69  E-value=1.7e-16  Score=81.03  Aligned_cols=55  Identities=40%  Similarity=0.752  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      +..++|+|+|.++.+++|+|++||++.++.. +++||.++.+|+.|+||++|++.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            4679999999999999999999999999998 789999999999999999999763

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.69  E-value=2.3e-16  Score=85.21  Aligned_cols=60  Identities=23%  Similarity=0.473  Sum_probs=53.9

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCC-EEEEEeCCeEEEEcCCCeEEccC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-END-WWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~-w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ......++|+|||.++..++|+|.+||+|.|+.. +.+ ||.|+.+|+.|+||++||+.+..
T Consensus         7 ~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   68 (80)
T 2i0n_A            7 PEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLS   68 (80)
T ss_dssp             CCCCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESS
T ss_pred             CCCCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            3445689999999999999999999999999998 666 99999999999999999998763

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=2e-16  Score=82.90  Aligned_cols=58  Identities=29%  Similarity=0.516  Sum_probs=53.4

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++.+++.|+||.+|++.+.
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2p_A            5 SSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS   63 (68)
T ss_dssp             CSCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCC
T ss_pred             CCCCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECC
Confidence            345679999999999999999999999999998 8999999999999999999998765

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.69  E-value=2e-16  Score=82.17  Aligned_cols=57  Identities=32%  Similarity=0.637  Sum_probs=52.3

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .....++|+|+|.++.+++|+|.+||+|.++.. +.+||.++.+|+.|+||++|++.+
T Consensus         7 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            7 DLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             SCCSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            344579999999999999999999999999998 789999999999999999999865

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.69  E-value=1.7e-16  Score=80.76  Aligned_cols=55  Identities=36%  Similarity=0.799  Sum_probs=51.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.++.+++|+|.+||++.++.. +++||.++.+|+.|+||++|++.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            368999999999999999999999999998 8899999999999999999998753

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.68  E-value=2.8e-16  Score=83.43  Aligned_cols=58  Identities=29%  Similarity=0.669  Sum_probs=53.6

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+.. +.+||.++.+|+.|+||.+|++.+..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (73)
T 2dbm_A            6 SGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA   64 (73)
T ss_dssp             CCCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSC
T ss_pred             CCCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccC
Confidence            44679999999999999999999999999998 88999999999999999999998764

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.68  E-value=1.6e-16  Score=80.92  Aligned_cols=54  Identities=33%  Similarity=0.728  Sum_probs=50.6

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .++|+|+|.++.+++|+|.+||++.++.. +++||.++.+|+.|+||++|++.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            58999999999999999999999999998 8999999999999999999998764

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.68  E-value=2.2e-16  Score=82.86  Aligned_cols=56  Identities=29%  Similarity=0.685  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.++.+++|+|.+||+|.|+.. +++||.|+.+|+.|+||++||+.+.
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   59 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIV   59 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcC
Confidence            3578999999999999999999999999998 8899999999999999999999865

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=3.6e-16  Score=81.97  Aligned_cols=57  Identities=39%  Similarity=0.862  Sum_probs=52.9

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++.+++.|+||++|++.+.
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A            6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS   63 (68)
T ss_dssp             CSEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECC
T ss_pred             CcEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcC
Confidence            44679999999999999999999999999998 7899999999999999999999875

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.68  E-value=2e-16  Score=82.75  Aligned_cols=56  Identities=23%  Similarity=0.415  Sum_probs=51.9

Q ss_pred             cEEEEeccCCCC--CCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDST--EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~--~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|+|.++  .+++|+|++||+|.|+.. +.+||.|+.+|+.|+||++||+.+..
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   60 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   60 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCS
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCC
Confidence            468999999998  999999999999999998 78999999999999999999998763

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.68  E-value=2.5e-16  Score=80.08  Aligned_cols=56  Identities=32%  Similarity=0.663  Sum_probs=51.4

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ++..++|+|+|.++.+++|+|.+||++.++.. +.+||.++.+|+.|+||++|++.+
T Consensus         2 p~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             CCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            34679999999999999999999999999998 799999999999999999999753

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.68  E-value=2.5e-16  Score=80.06  Aligned_cols=54  Identities=39%  Similarity=1.003  Sum_probs=50.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ..++|+++|.++.+++|+|.+||++.++.. +.+||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            568999999999999999999999999998 789999999999999999999865

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.68  E-value=2.6e-16  Score=83.78  Aligned_cols=61  Identities=21%  Similarity=0.512  Sum_probs=54.8

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ......++|+|+|.+..+++|+|.+||+|.|+..+++||.++.+|+.|+||.+|++.+...
T Consensus         7 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A            7 GVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCCCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CCCCeEEEECCCCCCCCCCccCCCCCCEEEEEecCCCEEEEEECCcEEEEchHHeEECCCC
Confidence            4455689999999999999999999999999988778999999999999999999987643

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.68  E-value=6.7e-17  Score=83.32  Aligned_cols=56  Identities=29%  Similarity=0.635  Sum_probs=52.0

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+.. +++||.++.+|+.|+||++|++.+
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEEC
Confidence            45689999999999999999999999999998 899999999999999999999765

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.68  E-value=2.4e-16  Score=80.20  Aligned_cols=54  Identities=37%  Similarity=0.807  Sum_probs=50.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ..++|+++|.++.+++|+|.+||++.++.. +++||.++.+|+.|+||++|++++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            468999999999999999999999999998 899999999999999999999864

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.68  E-value=3e-16  Score=81.28  Aligned_cols=57  Identities=42%  Similarity=0.749  Sum_probs=52.7

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+.. +.+||.++.+|+.|+||.+|++.+.
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A            5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK   62 (64)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CCEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcC
Confidence            34579999999999999999999999999998 7899999999999999999998875

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.68  E-value=2.1e-16  Score=84.51  Aligned_cols=60  Identities=30%  Similarity=0.586  Sum_probs=53.4

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCC---eEEEEcCCCeEEccC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD---RTGLFPSNYVVPYEA   65 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g---~~G~~P~~~v~~~~~   65 (95)
                      ......++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++..+   +.|+||++||+.+..
T Consensus         7 ~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~   70 (76)
T 2ed1_A            7 GNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD   70 (76)
T ss_dssp             SCCCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCC
T ss_pred             CCCCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCC
Confidence            3445689999999999999999999999999987 78999999855   899999999998763

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.68  E-value=1.9e-16  Score=80.59  Aligned_cols=53  Identities=40%  Similarity=0.792  Sum_probs=49.4

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeC--CeEEEEcCCCeEEc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--DRTGLFPSNYVVPY   63 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~--g~~G~~P~~~v~~~   63 (95)
                      .++|+|+|.+..+++|+|++||+|.++.. +.+||.++..  |+.|+||++|++.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            47899999999999999999999999998 8999999986  99999999999865

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.7e-16  Score=83.70  Aligned_cols=61  Identities=23%  Similarity=0.638  Sum_probs=54.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      .....++|+|+|.+..+++|+|.+||+|.|+.. +.+||.++.+|+.|+||.+||+.+....
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (79)
T 2yun_A            5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNA   66 (79)
T ss_dssp             CCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSCS
T ss_pred             CCCCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCCC
Confidence            345689999999999999999999999999998 7899999999999999999999876443

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.67  E-value=1e-16  Score=84.34  Aligned_cols=60  Identities=60%  Similarity=1.142  Sum_probs=54.1

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+..+.+||.++.+|+.|+||.+||+.+...
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            6 SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             CCSEEEECSSCBCCSSSSBCCBCTTCEEEECEEETTEEEECSTTCCEEECGGGCEECCCC
T ss_pred             CCCCEEEEeeeECCCCcCccCCCCCCEEEEEEeCCCEEEEEeCCcEEEEchHHeEECCCC
Confidence            445689999999999999999999999999887889999999999999999999987643

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.67  E-value=3.4e-16  Score=79.59  Aligned_cols=54  Identities=35%  Similarity=0.818  Sum_probs=50.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ..++|+++|.++.+++|+|.+||++.++.. +++||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            468999999999999999999999999998 889999999999999999999865

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.67  E-value=3.2e-16  Score=82.14  Aligned_cols=57  Identities=32%  Similarity=0.605  Sum_probs=50.8

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCC-----eEEEEcCCCeEEc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-----RTGLFPSNYVVPY   63 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g-----~~G~~P~~~v~~~   63 (95)
                      .....++|+|+|.++.+++|+|++||+|.|+.. +.+||.|+..+     +.|+||++||+.+
T Consensus         5 ~~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            5 EVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             CSSEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CCCEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            344579999999999999999999999999988 88999999744     8999999999864

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=5.2e-16  Score=83.92  Aligned_cols=60  Identities=28%  Similarity=0.487  Sum_probs=54.6

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....+++|+|+|.++.+++|+|++||+|.|+.. +.+||.++..|+.|+||.+||+.+..
T Consensus         7 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (81)
T 2ysq_A            7 GDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN   67 (81)
T ss_dssp             CCCCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSC
T ss_pred             CCCceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCC
Confidence            3445689999999999999999999999999998 89999999999999999999998753

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.67  E-value=1.4e-16  Score=84.47  Aligned_cols=61  Identities=26%  Similarity=0.427  Sum_probs=53.9

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ......++|+|+|.++.+++|+|.+||+|.|+..  +.+||.++.+|+.|+||++||+.+...
T Consensus         7 ~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A            7 GTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCSCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CCCccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            3445689999999999999999999999998874  689999999999999999999987643

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.67  E-value=4.2e-16  Score=80.18  Aligned_cols=55  Identities=24%  Similarity=0.675  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ...++|+|+|.++.+++|+|.+|+++.++.. +.+||.++.+|+.|+||++|++.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            4579999999999999999999999999998 789999999999999999999875

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.67  E-value=4.4e-16  Score=84.65  Aligned_cols=57  Identities=26%  Similarity=0.707  Sum_probs=52.6

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|||.++.+++|+|.+||+|.|+.. +++||.|..+|+.|+||++|++.+.
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~   73 (83)
T 1neg_A           16 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLA   73 (83)
T ss_dssp             -CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECC
Confidence            34579999999999999999999999999998 7899999999999999999999875

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.67  E-value=4.1e-16  Score=82.71  Aligned_cols=56  Identities=34%  Similarity=0.751  Sum_probs=51.6

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+.. +.+||.++.  +|+.|+||.+|++++
T Consensus        14 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TTCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            34579999999999999999999999999998 789999997  899999999999875

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.67  E-value=4.9e-16  Score=81.75  Aligned_cols=56  Identities=27%  Similarity=0.783  Sum_probs=51.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|||.++.+++|+|.+||+|.|+..   +++||.|+.+|+.|+||++||+.+..
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~   61 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   61 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCC
Confidence            468999999999999999999999999987   58899999999999999999998763

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.67  E-value=3e-16  Score=80.36  Aligned_cols=53  Identities=28%  Similarity=0.713  Sum_probs=50.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV   61 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~   61 (95)
                      ...++|+|+|.++.+++|+|++||+|.|+.. +++||.++.+|+.|+||++|++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            4679999999999999999999999999998 7899999999999999999986

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.66  E-value=3.4e-16  Score=82.26  Aligned_cols=59  Identities=24%  Similarity=0.587  Sum_probs=53.7

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++++++.|+||.+|++.+..
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            6 SGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CCCCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCCcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            345679999999999999999999999999998 88999999999999999999987653

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.66  E-value=2.1e-16  Score=82.68  Aligned_cols=55  Identities=22%  Similarity=0.301  Sum_probs=51.0

Q ss_pred             cEEEEeccCCCC--CCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDST--EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~--~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.+.  .+++|+|++||+|.|+.. +.+||.|+.+|+.|+||++||+.+.
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBC
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcC
Confidence            479999999998  889999999999999998 7899999999999999999998764

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.66  E-value=4.9e-16  Score=82.38  Aligned_cols=58  Identities=26%  Similarity=0.708  Sum_probs=53.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ...++|+|||.++.+++|+|.+||+|.|+.. +.+||.++.+|+.|+||++|++.+...
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   63 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPA   63 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC-
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            3579999999999999999999999999998 889999999999999999999987643

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=5.6e-16  Score=84.51  Aligned_cols=65  Identities=23%  Similarity=0.491  Sum_probs=55.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEEccCCccccccc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYEAQVDQQADL   73 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~~~~~~   73 (95)
                      ...++|+|+|.+..+++|+|.+||+|.|+.. +.+||.++ .+|+.|+||++||+.......+...|
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~l~~~~W   85 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPNNLETYEW   85 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCCCSCCCCCC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccCCCcccCCC
Confidence            4579999999999999999999999999998 78999998 48999999999999876555444433

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.66  E-value=8.1e-16  Score=82.59  Aligned_cols=59  Identities=19%  Similarity=0.489  Sum_probs=53.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++.+|+.|+||.+||+.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (78)
T 2yuo_A            5 SSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDE   64 (78)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECC
T ss_pred             CCceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCC
Confidence            345689999999999999999999999999998 88999999999999999999998763

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.66  E-value=6.5e-16  Score=80.02  Aligned_cols=56  Identities=36%  Similarity=0.863  Sum_probs=51.1

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ....++|+|+|.++.+++|+|.+||+|.|+..   +++||.|+.+|+.|+||++|++.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SSEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            34579999999999999999999999999986   578999999999999999999865

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.66  E-value=9e-17  Score=83.69  Aligned_cols=55  Identities=29%  Similarity=0.709  Sum_probs=51.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.++.+++|+|.+||+|.|+.. +++||.|+.+|+.|+||++|++.+.
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   57 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   57 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcC
Confidence            468999999999999999999999999988 8999999999999999999998765

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.66  E-value=1.5e-16  Score=83.37  Aligned_cols=59  Identities=27%  Similarity=0.639  Sum_probs=53.7

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ....++|+|+|.+..+++|+|++||+|.|+.. +.+||.++.+|+.|+||.+|++.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            6 SGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CCCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCC
Confidence            34579999999999999999999999999988 899999999999999999999987643

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.66  E-value=5.5e-16  Score=81.63  Aligned_cols=59  Identities=27%  Similarity=0.744  Sum_probs=53.3

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+..   +.+||.++.+|+.|+||.+|++.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A            5 SSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             CSSEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCC
T ss_pred             CCCcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCC
Confidence            345689999999999999999999999999987   58899999999999999999998753

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-15  Score=81.68  Aligned_cols=56  Identities=38%  Similarity=0.804  Sum_probs=52.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|+|.++.+++|+|.+||+|.|+.. +++||.++.+|+.|+||.+||+.+..
T Consensus        18 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   74 (78)
T 2ed0_A           18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG   74 (78)
T ss_dssp             EEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSS
T ss_pred             EEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCC
Confidence            478999999999999999999999999998 78999999999999999999998753

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.66  E-value=5.5e-16  Score=81.26  Aligned_cols=58  Identities=28%  Similarity=0.513  Sum_probs=53.0

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEE-eCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT-IGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+..+.+||.++ .+|+.|+||++|++.+..
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A            6 SGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             CCEEEEESSCBCCCSSSBCCBCTTCEEEEEECSSSEEEEECTTSCEEEEEGGGEECCCC
T ss_pred             CCeEEEECceECCCCcCcCCCCCCCEEEEEEcCCCEEEEEECCCCEEEEEhHHcEECCC
Confidence            4467999999999999999999999999999888999999 699999999999988753

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=6.8e-16  Score=81.96  Aligned_cols=59  Identities=25%  Similarity=0.573  Sum_probs=52.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-c--CCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~--~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.++.+++|+|++||+|.|+.. +  .+||.++.+|+.|+||.+|++.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            5 SSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             CSSSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCCCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCC
Confidence            345689999999999999999999999999987 3  3899999999999999999998763

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=7.5e-16  Score=82.22  Aligned_cols=58  Identities=26%  Similarity=0.499  Sum_probs=52.3

Q ss_pred             CCccEEEEeccCCCCC-------CCCceecCCCEEEEEe-c-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTE-------PGDLTFNQDEVIYVTK-K-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~-------~~~l~~~~g~~i~v~~-~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.+..       .++|+|++||+|.|+. . +.+||.++.+|+.|+||++||+.+.
T Consensus         5 ~~~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMS   71 (75)
T ss_dssp             CCSEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECC
T ss_pred             CCCcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEcc
Confidence            3456799999999999       9999999999999997 4 7899999999999999999999864

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.66  E-value=6.3e-16  Score=78.51  Aligned_cols=54  Identities=24%  Similarity=0.559  Sum_probs=50.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.++.+++|+|.+|++|.++.. +.+||.+..+|+.|+||++|+++.
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEEC
Confidence            368999999999999999999999999998 789999998999999999999865

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.66  E-value=7.1e-16  Score=81.87  Aligned_cols=57  Identities=26%  Similarity=0.654  Sum_probs=53.0

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|||.++.+++|+|++||+|.|+.. +++||.++.+|+.|+||++|++.+.
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   69 (73)
T 3c0c_A           12 DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLV   69 (73)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEE
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECC
Confidence            34679999999999999999999999999998 8999999999999999999999875

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.66  E-value=5.8e-16  Score=80.92  Aligned_cols=55  Identities=29%  Similarity=0.580  Sum_probs=50.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.+..+++|+|.+|++|.|+.. +.+||.++ .+|+.|+||++|++.+.
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   59 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESST
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEcC
Confidence            468999999999999999999999999998 79999999 58999999999999873

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.66  E-value=7.5e-16  Score=81.08  Aligned_cols=59  Identities=25%  Similarity=0.559  Sum_probs=52.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCC--eEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD--RTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g--~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+..+++|+|++||+|.|+.. +.+||.+++.+  +.|+||.+|++.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ecz_A            5 SSGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG   66 (70)
T ss_dssp             CCCBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSS
T ss_pred             CCCCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCC
Confidence            445679999999999999999999999999998 88999999854  999999999998763

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=80.69  Aligned_cols=58  Identities=26%  Similarity=0.596  Sum_probs=52.6

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec----cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+..    +.+||.++.+|+.|+||++||+.+..
T Consensus         7 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2dl7_A            7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS   68 (73)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCS
T ss_pred             CCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCC
Confidence            34579999999999999999999999999986    57899999999999999999998763

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.65  E-value=6.7e-16  Score=78.53  Aligned_cols=53  Identities=40%  Similarity=0.928  Sum_probs=49.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ..++|+++|.+..+++|+|.+||+|.|+.. +++||.++.+|+.|+||++|+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            578999999999999999999999999998 78999999999999999999974

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.65  E-value=6.1e-16  Score=81.74  Aligned_cols=56  Identities=30%  Similarity=0.660  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.++.+++|+|++||+|.|+.. +.+||.++.+|+.|+||.+|++.+.
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   69 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCP   69 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECC
Confidence            4579999999999999999999999999998 7899999999999999999998864

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=80.71  Aligned_cols=58  Identities=28%  Similarity=0.764  Sum_probs=53.0

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.+..+++|+|.+||+|.|+..   +.+||.|+.+|+.|+||++|++.+.
T Consensus         7 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   67 (73)
T 2k9g_A            7 KSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP   67 (73)
T ss_dssp             SSCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CCccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECC
Confidence            345689999999999999999999999999987   5899999999999999999999875

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.65  E-value=6.4e-16  Score=80.14  Aligned_cols=56  Identities=29%  Similarity=0.706  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.++.+++|+|.+||+|.++.. +.+||.++.+|+.|+||++|++.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            4579999999999999999999999999998 7999999999999999999998764

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.65  E-value=8.8e-16  Score=81.58  Aligned_cols=57  Identities=19%  Similarity=0.566  Sum_probs=51.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|||.+..+++|+|.+||+|.|+.. +++||.|+.  +|+.|+||++|++.+..
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~   64 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQP   64 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCS
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            3578999999999999999999999999998 789999997  48999999999998763

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=7.7e-16  Score=84.46  Aligned_cols=58  Identities=33%  Similarity=0.657  Sum_probs=53.1

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|||.++.+++|+|.+||+|.|+.. +.+||.+++.++.|+||.+||+.+..
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLN   74 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSS
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCC
Confidence            34579999999999999999999999999998 78999999999999999999997653

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.65  E-value=1.7e-16  Score=85.57  Aligned_cols=57  Identities=25%  Similarity=0.549  Sum_probs=52.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+.. +++||.|+.+|+.|+||++||+.+..
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~   75 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD   75 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCC
Confidence            4579999999999999999999999999988 89999999999999999999998753

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=81.75  Aligned_cols=58  Identities=29%  Similarity=0.660  Sum_probs=53.3

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.+..+++|+|++||+|.|+.. +.+||.++.+|+.|+||.+||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1x69_A           16 LGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQS   74 (79)
T ss_dssp             CCCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCC
T ss_pred             CCeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCC
Confidence            34579999999999999999999999999998 88999999999999999999998763

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.65  E-value=3.9e-16  Score=81.70  Aligned_cols=57  Identities=26%  Similarity=0.557  Sum_probs=51.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|||.++.+++|+|.+||++.|+..+++||.++. +|+.|+||++|+..+.+
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~Ww~~~~~~g~~G~~Psnyv~~~~~   61 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKLE   61 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEECSSSSCEEECTTSCEEECCCCSEEEC--
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEecCCCeEEEEeCCCCEEEeChHHEeEcCC
Confidence            3579999999999999999999999999998779999995 89999999999988653

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.65  E-value=6.5e-16  Score=79.56  Aligned_cols=56  Identities=27%  Similarity=0.648  Sum_probs=50.8

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEE
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVP   62 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~   62 (95)
                      .....++|+|+|.+..+++|+|++||+|.|+..+++||.+++  +|+.|+||++|++.
T Consensus         4 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   61 (62)
T 2iim_A            4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TTTCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCCcEEEEcccCCCCCCCCcCCCCCCEEEEEEcCCCEEEEEECCCCCEEEEEHHHEEE
Confidence            445689999999999999999999999999998669999994  89999999999975

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=3.4e-16  Score=82.43  Aligned_cols=60  Identities=25%  Similarity=0.546  Sum_probs=54.0

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++..++.|+||++|++.+...
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            6 SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             CCCBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCC
T ss_pred             CCCcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCC
Confidence            334569999999999999999999999999998 899999999999999999999987643

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.65  E-value=9.1e-16  Score=81.36  Aligned_cols=54  Identities=35%  Similarity=0.748  Sum_probs=50.2

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ...++|+|+|.+..+++|+|.+||+|.|+.. +.+||.|+..++.|+||++||++
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            4579999999999999999999999999998 78999999989999999999974

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.65  E-value=9.8e-16  Score=82.46  Aligned_cols=57  Identities=23%  Similarity=0.690  Sum_probs=52.3

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-c----CCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E----NDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~----~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|+|.+..+++|+|++||+|.|+.. +    .+||.++.+|+.|+||++||+.+.
T Consensus        12 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   73 (79)
T 1uhc_A           12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE   73 (79)
T ss_dssp             SSCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECC
T ss_pred             CCeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECC
Confidence            34579999999999999999999999999998 5    799999999999999999999875

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.65  E-value=6.3e-16  Score=79.64  Aligned_cols=54  Identities=37%  Similarity=0.736  Sum_probs=50.5

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .++|+|+|.++.+++|+|.+||+|.++..  +.+||.|+.+|+.|+||++|++.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   58 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIK   58 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECC
Confidence            58999999999999999999999999887  6899999999999999999999875

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.65  E-value=8.3e-16  Score=78.66  Aligned_cols=55  Identities=44%  Similarity=0.898  Sum_probs=50.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ...++|+|+|.++.+++|+|.+||+|.++..   +.+||.++.+|+.|+||++|++.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ccEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            3578999999999999999999999999987   478999999999999999999753

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.65  E-value=8.4e-16  Score=78.91  Aligned_cols=56  Identities=30%  Similarity=0.650  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEE-EEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTG-LFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G-~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|++||+|.|+.. +++||.++..++.| +||++|++.+.
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            3 KSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CCEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            3568999999999999999999999999998 88999999988886 99999998764

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.65  E-value=5.9e-16  Score=79.74  Aligned_cols=55  Identities=18%  Similarity=0.426  Sum_probs=50.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE--eCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.++.+++|+|.+||+|.|+.. +++||.++  .+|+.|+||++|++.+.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            468999999999999999999999999887 78999999  48999999999998763

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.65  E-value=6.6e-16  Score=79.57  Aligned_cols=54  Identities=37%  Similarity=0.744  Sum_probs=50.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+.. +++||.++..++.|+||++|++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            4579999999999999999999999999998 78999999999999999999974

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.65  E-value=5.5e-16  Score=81.42  Aligned_cols=59  Identities=34%  Similarity=0.606  Sum_probs=52.6

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeE-EEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT-GLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~-G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+..+++|+|.+||+|.|+.. +.+||.++..+.. |+||++|++.+..
T Consensus         5 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~   65 (69)
T 2eqi_A            5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG   65 (69)
T ss_dssp             CCCCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCS
T ss_pred             CCCcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECcc
Confidence            345679999999999999999999999999988 7899999986666 9999999998763

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1e-15  Score=80.78  Aligned_cols=59  Identities=20%  Similarity=0.404  Sum_probs=53.2

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec----cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+..+++|+|++||+|.|+..    +.+||.++.+|+.|+||.+|++.+..
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (71)
T 2cre_A            5 SSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSG   67 (71)
T ss_dssp             CCCEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCC
T ss_pred             CCcEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCC
Confidence            345689999999999999999999999999986    58899999999999999999998753

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=81.91  Aligned_cols=59  Identities=20%  Similarity=0.409  Sum_probs=52.4

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|||.++..++|+|++||+|.|+..+.+||.+++  +|+.|+||++||+.+..
T Consensus        15 ~~~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           15 LDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             SCCCEEEESSCSSCTTTSCCSSCTTCEEEEEEEETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CCCeEEEEccCCCCCCCCcCCCCCCCEEEEEecCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            344579999999999999999999999999987789999996  58999999999998753

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.3e-15  Score=80.13  Aligned_cols=60  Identities=27%  Similarity=0.594  Sum_probs=53.7

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEccCC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~   66 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.+++  +++.|+||.+|++.+..+
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            5 SSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CCCcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            345689999999999999999999999999998 889999997  489999999999987643

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.64  E-value=6.9e-16  Score=80.30  Aligned_cols=55  Identities=27%  Similarity=0.742  Sum_probs=51.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|||.++.+++|+|++||+|.|+.. +++||.++ .+|+.|+||++|+..+.
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   60 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH   60 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecC
Confidence            578999999999999999999999999998 78999999 58999999999998764

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7.3e-16  Score=81.35  Aligned_cols=59  Identities=22%  Similarity=0.490  Sum_probs=53.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +++||.+++.++.|+||.+|++.+..
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (71)
T 2dnu_A            6 SGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKD   65 (71)
T ss_dssp             CCSEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCC
T ss_pred             CCCCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccC
Confidence            445679999999999999999999999999998 78999999999999999999998763

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=6.6e-16  Score=80.95  Aligned_cols=58  Identities=22%  Similarity=0.453  Sum_probs=52.5

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.+..+++|+|.+||+|.|+..+++||.++. +|+.|+||++|++.+.
T Consensus         5 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~   63 (68)
T 1wxb_A            5 SSGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEAS   63 (68)
T ss_dssp             SSCCCEECSSCBCCSSSSBCCBCTTCEEEEEECSSSEEEEECTTSCEEEEETTTCCBCC
T ss_pred             CCCEEEEECccCCCCCCCccCCCCCCEEEEEEcCCCEEEEEECCCCEEEEEHHHeEECC
Confidence            345679999999999999999999999999988889999995 8999999999998765

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=80.73  Aligned_cols=60  Identities=22%  Similarity=0.422  Sum_probs=52.3

Q ss_pred             cccCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe----CCeEEEEcCCCeEEcc
Q psy7083           4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI----GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         4 ~~~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~----~g~~G~~P~~~v~~~~   64 (95)
                      ........++|+|+|.++ +++|+|++||+|.|+.. +.+||.++.    +++.|+||++|++.+.
T Consensus         5 ~~~~~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~   69 (75)
T 2egc_A            5 SSGNLKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN   69 (75)
T ss_dssp             SCSSCCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECC
T ss_pred             CCCCCCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECC
Confidence            334445679999999999 99999999999999998 788999997    4689999999999875

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.64  E-value=1.5e-15  Score=78.28  Aligned_cols=56  Identities=20%  Similarity=0.490  Sum_probs=50.9

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|.+|+++.++..  +.+||.++..|+.|+||++|++.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            4679999999999999999999999999985  5679999999999999999998764

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=83.30  Aligned_cols=57  Identities=23%  Similarity=0.407  Sum_probs=51.7

Q ss_pred             ccEEEEeccCCCC--CCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDST--EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~--~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.+.  ..++|+|++||+|.|+.. +.+||.|+.+|+.|+||++||+.+..
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   75 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP   75 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCS
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCC
Confidence            3479999999955  999999999999999998 78999999999999999999998763

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=80.56  Aligned_cols=58  Identities=22%  Similarity=0.539  Sum_probs=52.7

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+..+++||.++. +|+.|+||++|++.+..
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            6 EEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             CCEEEECSSCCCCSSTTSCCCCTTCEEEEEECSSSSEEEECTTSCEEEECTTSCEECCC
T ss_pred             CCeEEEECcCCCcCCCCcccCCCCCEEEEEECCCCEEEEEECCCCEEEEEhhHEEEcCC
Confidence            34679999999999999999999999999988779999996 89999999999998763

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.64  E-value=7.6e-16  Score=81.32  Aligned_cols=57  Identities=18%  Similarity=0.419  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE--eCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+.. +++||.|+  .+|+.|+||++||+.+..
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~   65 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK   65 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC-
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCC
Confidence            3568999999999999999999999999888 78999999  589999999999998763

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.64  E-value=1.8e-15  Score=79.41  Aligned_cols=56  Identities=20%  Similarity=0.619  Sum_probs=51.0

Q ss_pred             cEEEEeccCC-CCCCCCceecCCCEEEEEec-cCCEEEEEeC--CeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYD-STEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--DRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~-~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~--g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|+|. +..+++|+|.+||++.|+.. +++||.++..  |+.|+||++|++.+..
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   62 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKD   62 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCS
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            4689999995 99999999999999999998 7899999985  9999999999998753

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.64  E-value=7e-16  Score=81.02  Aligned_cols=56  Identities=21%  Similarity=0.496  Sum_probs=51.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec----cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      +..++|+|+|.++.+++|+|.+||+|.|+..    +.+||.|+.+|+.|+||++|++.+.
T Consensus         3 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   62 (69)
T 1wyx_A            3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV   62 (69)
T ss_dssp             EEEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEE
T ss_pred             CEEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECC
Confidence            3568999999999999999999999999987    3789999999999999999999875

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.64  E-value=3.6e-15  Score=80.35  Aligned_cols=59  Identities=24%  Similarity=0.495  Sum_probs=52.7

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeC-----CeEEEEcCCCeEEccCC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG-----DRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~-----g~~G~~P~~~v~~~~~~   66 (95)
                      ....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++..     ++.|+||.+|++.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CCEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CCeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            34679999999999999999999999999998 8899999974     48999999999987643

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3.4e-16  Score=82.71  Aligned_cols=59  Identities=22%  Similarity=0.373  Sum_probs=52.8

Q ss_pred             CCccEEEEeccCCC-CCCCCceecCCCEEEEEec-cCCEEEEE--eCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDS-TEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~-~~~~~l~~~~g~~i~v~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+ +.+++|+|++||+|.|+.. +++||.++  .+|+.|+||++||+.+..
T Consensus         5 ~~~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            5 SSGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CSCCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CCCCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            33457999999999 9999999999999999888 78999999  589999999999998753

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=8.5e-16  Score=82.87  Aligned_cols=56  Identities=38%  Similarity=0.795  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-c--CCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~--~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+.. +  .+||.++.+|+.|+||.+||+.+.
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   75 (80)
T 2d8h_A           17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS   75 (80)
T ss_dssp             CEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             CEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcC
Confidence            4578999999999999999999999999998 4  799999999999999999998765

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=7.8e-16  Score=80.99  Aligned_cols=59  Identities=34%  Similarity=0.695  Sum_probs=53.4

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE--eCCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.++.+++|+|++||+|.|+.. +.+||.++  .+++.|+||++|++.+..
T Consensus         5 ~~~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2cuc_A            5 SSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG   66 (70)
T ss_dssp             SSSCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCC
T ss_pred             CCCcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcC
Confidence            345679999999999999999999999999998 78999999  589999999999998763

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.64  E-value=6.8e-16  Score=78.22  Aligned_cols=53  Identities=26%  Similarity=0.718  Sum_probs=49.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~   62 (95)
                      ..++|+|+|.++.+++|+|.+||++.++.. +++||.++ .+|+.|+||++|++.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~   56 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEE
Confidence            468999999999999999999999999998 79999999 589999999999975

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.1e-15  Score=77.84  Aligned_cols=54  Identities=19%  Similarity=0.535  Sum_probs=49.5

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeC--CeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--DRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~--g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.++.+++|+|.+||++.|+.. +++||.++..  |+.|+||++|++.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            468999999999999999999999999988 7899999973  89999999999865

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=81.92  Aligned_cols=59  Identities=19%  Similarity=0.362  Sum_probs=53.2

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+..+++|+|.+||+|.|+..+.+||.+++  +++.|+||.+||+.+..
T Consensus        15 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           15 GDLPQVEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             SSCCEEEESSCCCCCSSSBCCCCTTEEEEEEEEETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCCCEEEECeeECCCCcCCcCCCCCCEEEEEEeCCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            344579999999999999999999999999888889999998  89999999999998753

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=83.52  Aligned_cols=58  Identities=24%  Similarity=0.535  Sum_probs=53.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++++++.|+||.+||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCc
Confidence            4479999999999999999999999999998 789999999999999999999987633

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=8.6e-16  Score=84.58  Aligned_cols=57  Identities=28%  Similarity=0.604  Sum_probs=52.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeC--CeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--DRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~--g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.+...++|+|.+||+|.|+.. +.+||.+++.  |+.|+||.+||+.+..
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCC
Confidence            3478999999999999999999999999998 8999999985  9999999999998763

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.63  E-value=9.1e-16  Score=79.57  Aligned_cols=54  Identities=26%  Similarity=0.713  Sum_probs=49.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeC--------CeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--------DRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~--------g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.++.+++|+|.+|++|.|+.. +.+||.++..        ++.|+||++|++.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            468999999999999999999999999998 8999999965        88999999999865

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.63  E-value=1.1e-15  Score=79.00  Aligned_cols=54  Identities=28%  Similarity=0.646  Sum_probs=49.8

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|||.++.+++|+|.+||+|.++.. +.+||.++.  +|+.|+||++|++.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            468999999999999999999999999988 789999998  899999999999875

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.63  E-value=1.6e-15  Score=79.49  Aligned_cols=58  Identities=22%  Similarity=0.587  Sum_probs=52.4

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.++.+++|+|.+||+|.|+..+++||.++. +|+.|+||++|++.+..
T Consensus         7 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            7 ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCCEEEESSCBCCCSSSBCCBCTTCEEEEEECSSSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CCEEEEECccCCCCCCCcccCCCCCEEEEEEcCCCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            34679999999999999999999999999998789999985 79999999999998753

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.63  E-value=1.3e-15  Score=79.10  Aligned_cols=55  Identities=22%  Similarity=0.396  Sum_probs=50.5

Q ss_pred             cEEEEeccCCC-CCCCCceecCCCEEEEEec-cCCEEEEE--eCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDS-TEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~-~~~~~l~~~~g~~i~v~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.+ +.+++|+|.+||+|.|+.. +++||.++  .+|+.|+||++|++.+.
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            56899999999 9999999999999999988 78999999  48999999999998763

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.63  E-value=1e-15  Score=82.52  Aligned_cols=57  Identities=30%  Similarity=0.668  Sum_probs=51.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEccCC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~   66 (95)
                      ..++|+|+|.++.+++|+|.+||+|.|+.. +.+||.|+.  +|+.|+||++|++.+...
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            468999999999999999999999999988 789999998  999999999999987643

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.63  E-value=1.4e-15  Score=82.86  Aligned_cols=60  Identities=32%  Similarity=0.648  Sum_probs=53.7

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEccCCcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEAQVD   68 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~~~   68 (95)
                      ...++|+|+|.++.+++|+|.+|++|.|+.. +.+||.++.  +|+.|+||++|++.+.....
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   68 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQG   68 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTCC-
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCccc
Confidence            4579999999999999999999999999998 789999998  89999999999998764433

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=2e-15  Score=80.73  Aligned_cols=58  Identities=28%  Similarity=0.598  Sum_probs=52.8

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeC---CeE------EEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG---DRT------GLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~---g~~------G~~P~~~v~~~~   64 (95)
                      .....++|+|||.+..+++|+|.+||+|.|+.. +.+||.++..   |+.      |+||++|++.+.
T Consensus         5 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~   72 (77)
T 2d8j_A            5 SSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDS   72 (77)
T ss_dssp             SCCEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECC
T ss_pred             CCCCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcC
Confidence            445689999999999999999999999999998 8999999975   888      999999999875

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.63  E-value=1.8e-15  Score=79.04  Aligned_cols=56  Identities=25%  Similarity=0.597  Sum_probs=51.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCC--eEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD--RTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g--~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|++||++.|+.. +.+||.++..+  +.|+||++|++.+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECC
Confidence            3579999999999999999999999999998 78999999854  99999999998765

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=2.4e-15  Score=81.29  Aligned_cols=57  Identities=28%  Similarity=0.522  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+..   +.+||.++.+|+.|+||.+||+.+..
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (81)
T 1x43_A           17 NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNS   76 (81)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCC
Confidence            4579999999999999999999999999987   47999999999999999999998763

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=80.03  Aligned_cols=56  Identities=32%  Similarity=0.659  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.+..+++|+|.+||+|.++.. +.+||.++. +|+.|+||++|+++..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            3579999999999999999999999999998 789999997 9999999999998754

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.63  E-value=3.7e-16  Score=83.55  Aligned_cols=58  Identities=38%  Similarity=0.740  Sum_probs=53.4

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++.+|+.|+||.+|++.+.
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 1ujy_A            8 SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             CCCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECC
T ss_pred             CCCEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECC
Confidence            445679999999999999999999999999988 7899999999999999999999875

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.63  E-value=1.4e-15  Score=80.31  Aligned_cols=56  Identities=29%  Similarity=0.570  Sum_probs=50.0

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEe-c-cCCEEEEE-eCCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-K-ENDWWTGT-IGDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~-~-~~~w~~~~-~~g~~G~~P~~~v~~~   63 (95)
                      .+..++|+|||.+..+++|+|.+||+|.|+. . +.+||.|+ .+|+.|+||++|++..
T Consensus        10 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             -CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC-
T ss_pred             CCCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEc
Confidence            3557999999999999999999999999999 5 78999999 5899999999999864

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=81.66  Aligned_cols=58  Identities=29%  Similarity=0.570  Sum_probs=52.2

Q ss_pred             CCccEEEEeccCCCCC-------CCCceecCCCEEEEEec-c-CCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTE-------PGDLTFNQDEVIYVTKK-E-NDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~-------~~~l~~~~g~~i~v~~~-~-~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.+..       .++|+|.+||+|.|+.. + ++||.++.+|+.|+||++||+.+.
T Consensus         5 ~~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   71 (76)
T 2csi_A            5 SSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS   71 (76)
T ss_dssp             CCSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             CCccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECC
Confidence            4456799999999998       89999999999999998 5 489999999999999999998765

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.62  E-value=2.2e-15  Score=77.02  Aligned_cols=54  Identities=24%  Similarity=0.679  Sum_probs=49.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.++.+++|+|.+||++.|+..  +++||.++.  +|+.|+||++|++.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            578999999999999999999999999987  589999998  899999999999753

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1e-15  Score=76.83  Aligned_cols=51  Identities=24%  Similarity=0.569  Sum_probs=47.3

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEeCCeEEEEcCCCeE
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTIGDRTGLFPSNYVV   61 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~g~~G~~P~~~v~   61 (95)
                      .++|+|+|.++.+++|+|++||+|.|+.. + ++||.++.+|+.|+||++|++
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            47899999999999999999999999998 5 699999999999999999974

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.2e-15  Score=78.82  Aligned_cols=57  Identities=21%  Similarity=0.638  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+..  +.+||.+++  +|+.|+||.+|++.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRD   66 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTT
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCC
Confidence            4679999999999999999999999999987  689999998  89999999999998763

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.62  E-value=4.2e-15  Score=79.53  Aligned_cols=59  Identities=24%  Similarity=0.410  Sum_probs=52.9

Q ss_pred             ccEEEEeccCCCC-CCCCceecCCCEEEEEec--cCCEEEEE-eCCeEEEEcCCCeEEccCCc
Q psy7083           9 QEYYIAAYPYDST-EPGDLTFNQDEVIYVTKK--ENDWWTGT-IGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus         9 ~~~~~al~~~~~~-~~~~l~~~~g~~i~v~~~--~~~w~~~~-~~g~~G~~P~~~v~~~~~~~   67 (95)
                      ...++|+|+|.+. .+++|+|.+||+|.|+..  +.+||.++ .+|+.|+||.+|++.+....
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~~   71 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDG   71 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCCC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCCC
Confidence            4689999999999 999999999999999987  48999999 69999999999999876443

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=2.9e-15  Score=83.50  Aligned_cols=57  Identities=26%  Similarity=0.542  Sum_probs=51.2

Q ss_pred             ccEEEEeccCCCC--------CCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDST--------EPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~--------~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.+.        ..++|+|++||+|.|+..  +.+||.++.+|+.|+||++||+.+..
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   83 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQA   83 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCC
Confidence            4578999999998        789999999999999965  47799999999999999999998763

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.61  E-value=1.1e-15  Score=77.62  Aligned_cols=51  Identities=20%  Similarity=0.398  Sum_probs=47.7

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEe--CCeEEEEcCCCeE
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTI--GDRTGLFPSNYVV   61 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~--~g~~G~~P~~~v~   61 (95)
                      .++|+|+|.++.+++|+|++||++.++.. + ++||.++.  +|+.|+||++|++
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            47899999999999999999999999998 5 79999998  9999999999986

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.61  E-value=4.6e-15  Score=78.24  Aligned_cols=57  Identities=30%  Similarity=0.638  Sum_probs=51.7

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEE-eCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGT-IGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~-~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.+..+++|+|.+||+|.|+..   +.+||.++ .+|+.|+||++|++.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   66 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCC
Confidence            4579999999999999999999999999987   58899998 589999999999998763

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.61  E-value=1.6e-15  Score=79.44  Aligned_cols=58  Identities=34%  Similarity=0.744  Sum_probs=52.0

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.+..+++|+|.+|++|.|+.. +.+||.++ .+|+.|+||++|++.+.
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A            8 STGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             -CCEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCCCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            345679999999999999999999999999998 78999999 58999999999998764

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.61  E-value=1.3e-15  Score=80.17  Aligned_cols=54  Identities=20%  Similarity=0.584  Sum_probs=48.4

Q ss_pred             cEEEEeccCCCCCCC-CceecCCCEEEEEec-c-----CCEEEEEe-CCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK-E-----NDWWTGTI-GDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~-~l~~~~g~~i~v~~~-~-----~~w~~~~~-~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.++.++ +|+|++|+++.|+.. +     ++||.++. +|+.|+||++||+.+
T Consensus         8 ~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             -CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            468999999999999 999999999999988 4     39999998 899999999999753

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.61  E-value=1.7e-15  Score=77.47  Aligned_cols=56  Identities=18%  Similarity=0.486  Sum_probs=50.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|+|.+..+++|+|.+|+++.|+..+++||.++. +|+.|+||++|++.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGGCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEcCCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            468999999999999999999999999888889999995 89999999999998753

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.61  E-value=3.5e-15  Score=82.60  Aligned_cols=57  Identities=32%  Similarity=0.674  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|||.++..++|+|.+||+|.|+..   +.+||.|+.+|+.|+||.+||+.+..
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   64 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCC
Confidence            3568999999999999999999999999886   57899999999999999999998763

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=7.3e-15  Score=79.42  Aligned_cols=57  Identities=19%  Similarity=0.422  Sum_probs=51.0

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cC-CEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-EN-DWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~-~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|||.+..+++|+|++||+|.|+.. ++ +||.+++  +|+.|+||++|++...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           16 PGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             TTCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CCCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            34579999999999999999999999999997 54 8999996  7999999999998754

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.61  E-value=2.8e-15  Score=76.12  Aligned_cols=52  Identities=31%  Similarity=0.741  Sum_probs=48.0

Q ss_pred             EEEEeccC-CCCCCCCceecCCCEEEEEec-cCCEEEEEeC--CeEEEEcCCCeEE
Q psy7083          11 YYIAAYPY-DSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--DRTGLFPSNYVVP   62 (95)
Q Consensus        11 ~~~al~~~-~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~--g~~G~~P~~~v~~   62 (95)
                      .++|+++| .+..+++|+|++||+|.|+.. +++||.|+..  |+.|+||++|+++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            57999999 899999999999999999998 7899999975  9999999999974

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.61  E-value=5.2e-16  Score=85.86  Aligned_cols=59  Identities=25%  Similarity=0.646  Sum_probs=54.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      ...++|+|+|.+..+++|+|.+||+|.|+.. +++||.|+.+|+.|+||++||+.+....
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCS
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCC
Confidence            3479999999999999999999999999998 8999999999999999999999876443

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.61  E-value=1.5e-15  Score=77.71  Aligned_cols=54  Identities=28%  Similarity=0.588  Sum_probs=48.3

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEeC-CeEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTIG-DRTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~-g~~G~~P~~~v~~   62 (95)
                      +..++|+|+|.++.+++|+|++||++.++.. + .+||.++.. |+.|+||++|++.
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~   59 (60)
T 2x3w_D            3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA   59 (60)
T ss_dssp             -CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC
T ss_pred             CCEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEE
Confidence            3568999999999999999999999999887 4 589999986 9999999999975

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=6.6e-15  Score=77.45  Aligned_cols=57  Identities=14%  Similarity=0.369  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEeC-CeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTIG-DRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~-g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.+..+++|+|.+||++.|+.. + ++||.++.. |+.|+||.+|++.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            4579999999999999999999999999987 4 669999975 9999999999998753

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.60  E-value=2.1e-15  Score=78.72  Aligned_cols=55  Identities=18%  Similarity=0.364  Sum_probs=48.6

Q ss_pred             ccEEEEeccCCCCCCCC-ceecCCCEEEEEec--cCCEEEEE--eCCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK--ENDWWTGT--IGDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~-l~~~~g~~i~v~~~--~~~w~~~~--~~g~~G~~P~~~v~~~   63 (95)
                      ...++|+|+|.+...++ |+|++||+|.|+..  +++||.|+  .+|+.|+||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            35799999999988777 99999999999854  68999999  5899999999999875

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.60  E-value=3.1e-15  Score=79.13  Aligned_cols=59  Identities=22%  Similarity=0.395  Sum_probs=52.0

Q ss_pred             CCccEEEEeccCCC-CCCCCceecCCCEEEEEec--cCCEEEEEeC--CeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDS-TEPGDLTFNQDEVIYVTKK--ENDWWTGTIG--DRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~-~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~--g~~G~~P~~~v~~~~~   65 (95)
                      .....++|+|+|.+ +.+++|+|.+||+|.|+..  +.+||.+++.  ++.|+||++||+.+..
T Consensus         5 ~~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   68 (72)
T 1spk_A            5 SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCC
Confidence            34567999999995 8999999999999999975  6899999986  9999999999998763

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=82.47  Aligned_cols=54  Identities=31%  Similarity=0.785  Sum_probs=49.7

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec------cCCEEEEEe-CCeEEEEcCCCeE
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK------ENDWWTGTI-GDRTGLFPSNYVV   61 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~------~~~w~~~~~-~g~~G~~P~~~v~   61 (95)
                      ....++|+|||.+..+++|+|++||+|.|+..      +++||.|+. +|+.|+||++||+
T Consensus        28 ~~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             CCCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             CCcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            34579999999999999999999999999987      589999998 9999999999986

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.6e-15  Score=80.60  Aligned_cols=56  Identities=23%  Similarity=0.480  Sum_probs=51.3

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEeC-CeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTIG-DRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~-g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.+..+++|+|++||+|.|+.. + .+||.+++. |+.|+||.+|++.+.
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   71 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPT   71 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSC
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECC
Confidence            4579999999999999999999999999998 5 899999985 999999999998765

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.60  E-value=3.4e-15  Score=78.96  Aligned_cols=57  Identities=26%  Similarity=0.604  Sum_probs=51.2

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe---CCeE---EEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI---GDRT---GLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~---~g~~---G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.+..+++|+|.+||+|.| .. +.+||.++.   +|+.   |+||++|++.+.
T Consensus         8 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A            8 HLGPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             SCCCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CCCcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            345689999999999999999999999999 77 899999997   7999   999999998753

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=82.91  Aligned_cols=56  Identities=27%  Similarity=0.442  Sum_probs=50.1

Q ss_pred             ccEEEEeccC-CCCCCCCceecCCCEEEEEec-cCCEEEEEeC------CeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPY-DSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG------DRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~-~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~------g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+| .++.+++|+|++||+|.|+.. +++||.|+..      |+.|+||++||+.+.
T Consensus        18 ~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           18 SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            4579999999 799999999999999999988 7899999974      689999999998754

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.60  E-value=5.3e-15  Score=81.63  Aligned_cols=56  Identities=21%  Similarity=0.569  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCCCCC-CceecCCCEEEEEec-cC-----CEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK-EN-----DWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~-~l~~~~g~~i~v~~~-~~-----~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.+...+ +|+|.+||+|.|+.. +.     +||.|++ +|+.|+||.+|++.+.
T Consensus        14 ~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~   77 (92)
T 1jqq_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK   77 (92)
T ss_dssp             CEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECC
T ss_pred             CEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECC
Confidence            4579999999999999 999999999999998 55     8999998 8999999999999875

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=5.1e-15  Score=80.68  Aligned_cols=59  Identities=32%  Similarity=0.563  Sum_probs=52.9

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+..   +.+||.|+.+|+.|+||++||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            7 GSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCS
T ss_pred             CCEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCc
Confidence            34579999999999999999999999999974   588999999999999999999987643

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.60  E-value=2.1e-15  Score=80.28  Aligned_cols=58  Identities=21%  Similarity=0.580  Sum_probs=50.6

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.++.+++|+|++||+|.|+..  +.+||.++.+|+.|+||++|++.+.
T Consensus         7 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            7 VGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             ---CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CCCeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            345679999999999999999999999999887  4689999999999999999998754

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.59  E-value=6.7e-15  Score=80.24  Aligned_cols=56  Identities=27%  Similarity=0.647  Sum_probs=51.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+...++||.+++  +|+.|+||.+|++.+.
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   82 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD   82 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEESSSEEEEEETTTCCEEEEEGGGEEEGG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcCCCeEEEEECCCCCEEEEehHHcEEcc
Confidence            3579999999999999999999999999998569999998  9999999999999874

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.59  E-value=3.4e-15  Score=80.40  Aligned_cols=56  Identities=21%  Similarity=0.569  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCC-CceecCCCEEEEEec-cC-----CEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK-EN-----DWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~-~l~~~~g~~i~v~~~-~~-----~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.+..++ +|+|++||+|.|+.. +.     +||.+++ +|+.|+||++|++.+.
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   77 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK   77 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC-
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcC
Confidence            3579999999999999 999999999999998 55     8999998 8999999999998864

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.59  E-value=4.7e-15  Score=77.41  Aligned_cols=56  Identities=25%  Similarity=0.461  Sum_probs=50.2

Q ss_pred             ccEEEEeccCCC-CCCCCceecCCCEEEEEec--cCCEEEEEeC--CeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDS-TEPGDLTFNQDEVIYVTKK--ENDWWTGTIG--DRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~-~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~--g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.+ +.+++|+|.+||+|.|+..  +++||.++..  |+.|+||++|++.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            467999999995 8999999999999999984  6899999975  999999999998763

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.58  E-value=3.3e-15  Score=79.29  Aligned_cols=53  Identities=23%  Similarity=0.617  Sum_probs=49.4

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ++|+|+|.+ .+++|+|.+||+|.|+.. +++||.++.+|+.|+||++|++.+.+
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   56 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   56 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCS
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            678999998 899999999999999998 89999999999999999999998763

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.58  E-value=3.5e-15  Score=81.55  Aligned_cols=53  Identities=28%  Similarity=0.635  Sum_probs=49.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVV   61 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~   61 (95)
                      ...++|+|||.+...++|+|.+||+|.|+..+++||.++. +|+.|+||++||+
T Consensus        31 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~~g~~G~~P~~yv~   84 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVE   84 (86)
T ss_dssp             CEEEEESSCCCCCSSSBCCCCTTEEEEEEECCSSEEEEECTTSCEEEEEGGGBC
T ss_pred             ceEEEECccCCCCCCCEeccCCCCEEEEEecCCCeEEEEECCCCEEEeehHHEE
Confidence            3579999999999999999999999999988779999995 8999999999985

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.58  E-value=9e-15  Score=80.41  Aligned_cols=57  Identities=30%  Similarity=0.654  Sum_probs=52.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|||.++.+++|+|.+||++.++..+++||.|+.  +|+.|+||++|++.+..
T Consensus         3 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   61 (90)
T 3reb_B            3 DIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDS   61 (90)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             cEEEEECCccCcCCcCcCCCCCCCEEEEEEeCCCEEEEEECCCCCEEEEehhheEECCC
Confidence            3568999999999999999999999999988778999997  89999999999998763

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.58  E-value=8.2e-15  Score=77.80  Aligned_cols=56  Identities=23%  Similarity=0.610  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe---CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~---~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|.+||+|.|+..+++||.|+.   +|+.|+||++|++...
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~W~~g~~~~~~g~~G~~P~~yv~~~~   69 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETYEGWYRGYTLRKKSKKGIFPASYIHLKE   69 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBSSSCEEEEESSCSSCCEEECGGGEEECC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcCCCeEEEEECCCCCCEEEEehHHEEEec
Confidence            4579999999999999999999999999988778999997   6899999999998764

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.57  E-value=2.7e-15  Score=83.53  Aligned_cols=58  Identities=24%  Similarity=0.543  Sum_probs=51.9

Q ss_pred             ccEEEEeccCCCCC------CCCceecCCCEEEEE-ec-cCCEEEEEe-CCeEEEEcCCCeEEccCC
Q psy7083           9 QEYYIAAYPYDSTE------PGDLTFNQDEVIYVT-KK-ENDWWTGTI-GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         9 ~~~~~al~~~~~~~------~~~l~~~~g~~i~v~-~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~~   66 (95)
                      ...++|+|+|.++.      .++|+|.+||+|.|+ .. +.+||.++. +|+.|+||++||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            34789999999988      999999999999999 65 789999998 999999999999987643

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.57  E-value=1.7e-14  Score=79.43  Aligned_cols=56  Identities=30%  Similarity=0.659  Sum_probs=51.2

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEE-eCCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGT-IGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~-~~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|+|.+..+++|+|.+||+|.|+..   +.+||.++ .+|+.|+||.+||+.+..
T Consensus        18 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   77 (91)
T 1wx6_A           18 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   77 (91)
T ss_dssp             EEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEE
T ss_pred             EEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCC
Confidence            479999999999999999999999999987   57899999 589999999999998763

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.56  E-value=8e-16  Score=80.37  Aligned_cols=58  Identities=24%  Similarity=0.535  Sum_probs=51.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++ .+|+.|+||++|++.++
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            6 SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             SCCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CCCeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            345689999999999999999999999999988 78999999 58999999999997654

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.56  E-value=5e-15  Score=82.66  Aligned_cols=57  Identities=40%  Similarity=0.749  Sum_probs=52.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.++..++|+|.+||+|.|+.. +.+||.++.+|+.|+||.+|++.+..
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   91 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD   91 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCC
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            4578999999999999999999999999998 78999999999999999999998753

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.4e-14  Score=76.20  Aligned_cols=56  Identities=34%  Similarity=0.709  Sum_probs=49.5

Q ss_pred             ccEEEEeccCCCCCCC--CceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPG--DLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~--~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.+...+  +|+|.+|++|.|+..+.+||.++. +|+.|+||++|++.+.
T Consensus         5 ~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (70)
T 2vkn_A            5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQLID   63 (70)
T ss_dssp             EEEEEESSCBCCCSSSTTBCCBCTTCEEEEECTTSSEEEEECTTSCEEEEEGGGEEEEE
T ss_pred             CEEEEECccCCCCCCCCCcccCCCCCEEEEEEcCCCeEEEEECCCCEEEEehHHEEECC
Confidence            3578999999998655  999999999999877889999984 9999999999999865

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.54  E-value=6.9e-14  Score=79.26  Aligned_cols=56  Identities=34%  Similarity=0.786  Sum_probs=51.9

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.+..+++|+|.+||+|.|+.. +.+||.+++  +|+.|+||.+||+.+.
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   85 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD   85 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESS
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECC
Confidence            3579999999999999999999999999998 899999996  8999999999999875

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.54  E-value=1.2e-14  Score=82.44  Aligned_cols=55  Identities=29%  Similarity=0.507  Sum_probs=49.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec--cCC--EEEEEeC--------CeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--END--WWTGTIG--------DRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~--w~~~~~~--------g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.++.+++|+|++|++|.|+.+  +.+  ||.|+..        |+.|+||++||+.+.
T Consensus        23 ~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~   89 (108)
T 1i1j_A           23 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQ   89 (108)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEE
T ss_pred             eEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcc
Confidence            468999999999999999999999999886  344  9999975        899999999999865

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.54  E-value=1.5e-14  Score=80.05  Aligned_cols=58  Identities=21%  Similarity=0.479  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-c----CCEEEEEeCCe-EEEEcCCCeEEccCC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E----NDWWTGTIGDR-TGLFPSNYVVPYEAQ   66 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~----~~w~~~~~~g~-~G~~P~~~v~~~~~~   66 (95)
                      ...++|+|+|.+..+++|+|.+||+|.|+.. +    .+||.++..+. .|+||.+||+.+...
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~   80 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKR   80 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCB
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCc
Confidence            4579999999999999999999999999998 5    59999998776 899999999987643

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=83.63  Aligned_cols=55  Identities=18%  Similarity=0.488  Sum_probs=50.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe---CCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~---~g~~G~~P~~~v~~~   63 (95)
                      ..+++|+|+|.++..++|+|.+||+|.|+..+++||.|+.   +|+.|+||.+||+.+
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~gWw~g~~~~~~g~~G~fP~nyV~~~  116 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIK  116 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEETTEEEEEESSCTTCEEEEEGGGBCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcCCCEEEEEECCCCCCEEEeChhHEEEe
Confidence            3578999999999999999999999999998669999998   899999999999764

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.53  E-value=6.9e-14  Score=82.83  Aligned_cols=57  Identities=30%  Similarity=0.602  Sum_probs=52.2

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|||.++.+++|+|.+||+|.|+..  +++||.|+.+|+.|+||++||+.+..
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEccc
Confidence            3579999999999999999999999999987  58999999999999999999998753

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.53  E-value=1.9e-14  Score=79.19  Aligned_cols=58  Identities=28%  Similarity=0.502  Sum_probs=50.4

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEe-------------c---cCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-------------K---ENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~-------------~---~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.++.+++|+|.+||+|.|+.             .   +.+||.|++  +|+.|+||.+||+.+.
T Consensus         9 ~~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~   84 (90)
T 3o5z_A            9 PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLG   84 (90)
T ss_dssp             CSEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEE
T ss_pred             CCCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEec
Confidence            34567999999999999999999999999983             2   238999987  6999999999999875

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.52  E-value=5.3e-15  Score=83.96  Aligned_cols=55  Identities=22%  Similarity=0.473  Sum_probs=49.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeE---EEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT---GLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~---G~~P~~~v~~~~   64 (95)
                      .+++|+|||.++.+++|+|++||+|.|+.. +.+||.++..|+.   |+||++||+.+.
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~   64 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIID   64 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCC
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEec
Confidence            468999999999999999999999999987 8899999986555   999999998765

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=6e-14  Score=77.69  Aligned_cols=56  Identities=25%  Similarity=0.578  Sum_probs=51.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec---c--CCEEEEE--eCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---E--NDWWTGT--IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~--~~w~~~~--~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|++||+|.|+..   +  ++||.++  .+|+.|+||.+||+.+.
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   78 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKAD   78 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECC
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcc
Confidence            4579999999999999999999999999986   2  8999999  69999999999999875

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.50  E-value=8.3e-16  Score=81.19  Aligned_cols=57  Identities=32%  Similarity=0.609  Sum_probs=51.2

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEE-EEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTG-LFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G-~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.++.+++|+|.+|++|.|+.. +.+||.++.+++.| +||++|++.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~   64 (71)
T 1hsq_A            6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN   64 (71)
T ss_dssp             SSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSC
T ss_pred             CeEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCC
Confidence            3568999999999999999999999999988 78999999988776 999999987753

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.50  E-value=3.1e-14  Score=81.65  Aligned_cols=54  Identities=22%  Similarity=0.453  Sum_probs=49.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEe-----c-cCCEEEEEeC----------CeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTK-----K-ENDWWTGTIG----------DRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~-----~-~~~w~~~~~~----------g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.+..+++|+|++||+|.|+.     . +.+||.|++.          |+.|+||++||+.+
T Consensus        45 ~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           45 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             eEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            46999999999999999999999999999     6 7899999863          78999999999865

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.49  E-value=6.1e-14  Score=80.93  Aligned_cols=56  Identities=16%  Similarity=0.410  Sum_probs=51.0

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe---CCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~---~g~~G~~P~~~v~~~~~   65 (95)
                      .+++|+|||.+..+++|+|.+||+|.|+.. +++||.|+.   .|+.|+||++||+.+..
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~   63 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDL   63 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECS
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccC
Confidence            468999999999999999999999999998 899999985   67889999999998753

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.49  E-value=5e-14  Score=76.38  Aligned_cols=56  Identities=27%  Similarity=0.456  Sum_probs=49.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec----------------cCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----------------ENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----------------~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      +..++|+|+|.++.+++|+|.+||+|.|+..                +.+||.|++  +|+.|+||.+||+.+.
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~   78 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIG   78 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECC
Confidence            4578999999999999999999999999842                248999986  6899999999998765

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.46  E-value=2.1e-13  Score=88.03  Aligned_cols=56  Identities=36%  Similarity=0.761  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      +..++|+|||.+..+++|+|.+||++.|+.. +++||.|+.+|+.|+||++||+.+.
T Consensus         2 ~~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~   58 (283)
T 3jv3_A            2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTT   58 (283)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGG
T ss_pred             CeEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccC
Confidence            3578999999999999999999999999998 7899999999999999999999875

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.46  E-value=1.4e-15  Score=81.45  Aligned_cols=54  Identities=31%  Similarity=0.651  Sum_probs=49.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      ...++|+|||.+...++|+|.+||+|.|+.. +.+||.++. +|+.|+||++|++.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            3568999999999999999999999999988 789999995 89999999999965

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.46  E-value=2.2e-13  Score=85.17  Aligned_cols=56  Identities=36%  Similarity=0.836  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.++.+++|+|.+||+|.|+.. +++||.|+.+|+.|+||++||+.+.
T Consensus       158 ~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~  214 (217)
T 1gri_A          158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN  214 (217)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEEC
T ss_pred             ceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECC
Confidence            4579999999999999999999999999998 7899999999999999999999875

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.46  E-value=3.8e-13  Score=83.11  Aligned_cols=56  Identities=30%  Similarity=0.543  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      +..++|+|+|.+...++|+|.+||+|.|+.. +++||.|+.+|+.||||.+||+.+.
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~  137 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG  137 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETT
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECC
Confidence            4578999999999999999999999999998 8999999999999999999999875

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.44  E-value=4e-13  Score=81.78  Aligned_cols=57  Identities=25%  Similarity=0.606  Sum_probs=51.2

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|||.++.+++|+|++||++.|+..+.+||.++.  +|+.|+||++|+....
T Consensus        11 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           11 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKAN   69 (175)
T ss_dssp             --CEEEESSCBCCCSSSBCCBCTTCEEEEEECCSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CCcEEEEccCcCCcCCcccccccCCEEEEEccCCCEEEEEECCCCceeeeccccccccc
Confidence            34589999999999999999999999999988779999997  8999999999999754

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=1.5e-13  Score=86.05  Aligned_cols=54  Identities=22%  Similarity=0.453  Sum_probs=49.4

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEe-----c-cCCEEEEEe----------CCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTK-----K-ENDWWTGTI----------GDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~-----~-~~~w~~~~~----------~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.+...++|+|.+||+|.|+.     . +.+||.|+.          +|+.|+||.+||+.+
T Consensus       143 ~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          143 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             EEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            47999999999999999999999999999     6 789999996          488999999999865

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.44  E-value=2.5e-13  Score=82.60  Aligned_cols=54  Identities=31%  Similarity=0.612  Sum_probs=49.9

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      ...++|+|||.+..+++|+|.+||+|.|+.+ +++||.|+. +|+.|+||++||+.
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            3478999999999999999999999999998 899999994 99999999999974

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.42  E-value=7.5e-13  Score=87.93  Aligned_cols=56  Identities=25%  Similarity=0.560  Sum_probs=52.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.+++|+|++||+|.|+.. +++||.|+.+|+.|+||++||+.+.
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~  230 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK  230 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEE
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcC
Confidence            4579999999999999999999999999998 8999999999999999999999875

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.41  E-value=5.5e-13  Score=81.93  Aligned_cols=56  Identities=20%  Similarity=0.500  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe---CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~---~g~~G~~P~~~v~~~~   64 (95)
                      ..+++|+|+|.++.+++|+|.+||++.|+...++||.|+.   +|+.|+||++||+...
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~W~~g~~~~~~g~~G~fP~nyV~~~~   75 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKE   75 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTEEEEEETTEEEEEEEEEGGGEEEEC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCCCEEEEEEecCCCceEEECcceEEEec
Confidence            4579999999999999999999999999998446999997   7899999999999875

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.38  E-value=2.8e-12  Score=68.58  Aligned_cols=53  Identities=32%  Similarity=0.617  Sum_probs=42.4

Q ss_pred             EEEEeccCCCCC------CCCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083          11 YYIAAYPYDSTE------PGDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus        11 ~~~al~~~~~~~------~~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      .+.++++|.+..      .++|+|++||+|.|+..  +.+||.|++  +|+.|+||++||++.
T Consensus        14 ~~~~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           14 KMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   76 (78)
T ss_dssp             CEEECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEES
T ss_pred             cEEEEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            344555444333      48999999999999987  589999994  899999999999864

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.37  E-value=2.1e-12  Score=88.54  Aligned_cols=56  Identities=25%  Similarity=0.487  Sum_probs=52.5

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.+..+++|+|.+||++.|+.. +++||.|+.+|+.|+||++||+.+.
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   86 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRV   86 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECS
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeecc
Confidence            4579999999999999999999999999998 8999999999999999999999865

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.36  E-value=4e-12  Score=66.63  Aligned_cols=42  Identities=36%  Similarity=0.722  Sum_probs=36.8

Q ss_pred             CCCCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083          22 EPGDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus        22 ~~~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|++||+|.|+..  +.+||.|++  +|+.|+||++||++.
T Consensus        23 ~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           23 FGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (70)
T ss_dssp             CSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEEC
Confidence            345999999999999987  579999974  899999999999864

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.35  E-value=2.1e-13  Score=86.26  Aligned_cols=56  Identities=27%  Similarity=0.727  Sum_probs=51.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.+..+++|+|.+||+|.|+.. +++||.|+ .+|+.|+||++||+.+.
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~  193 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR  193 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCC
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcC
Confidence            3468999999999999999999999999998 89999999 68999999999999875

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.34  E-value=5.6e-13  Score=82.36  Aligned_cols=58  Identities=22%  Similarity=0.583  Sum_probs=53.0

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.+..+++|+|.+||+|.|+.. +.+||.|+.+|+.||||.+|++.+..
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   68 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS   68 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSC
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeecc
Confidence            34578999999999999999999999999998 78999999999999999999987653

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.33  E-value=6.4e-13  Score=87.06  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=51.6

Q ss_pred             cEEEEeccCC--CCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083          10 EYYIAAYPYD--STEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus        10 ~~~~al~~~~--~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ..++|+|||.  +..+++|+|.+||+|.|+.+ +++||.|+.+|+.|+||++||+.+...
T Consensus       238 ~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ  297 (304)
T ss_dssp             CCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSC
T ss_pred             EEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHHEEECCCC
Confidence            3688999999  67999999999999999998 899999999999999999999987643

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.33  E-value=6.4e-12  Score=64.68  Aligned_cols=44  Identities=25%  Similarity=0.751  Sum_probs=40.4

Q ss_pred             CCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          22 EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        22 ~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      .+++|+|.+|+++.|+.. +.+||.++.+|+.|+||++|++.+.+
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   46 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   46 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCC
Confidence            578999999999999998 78999999999999999999998763

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.32  E-value=8.2e-12  Score=81.82  Aligned_cols=57  Identities=26%  Similarity=0.716  Sum_probs=52.3

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE-eCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.++.+++|+|.+|++|.|+.. +.+||.++ .+|+.|+||++||+.+..
T Consensus       134 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~  192 (304)
T 2eyz_A          134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRP  192 (304)
T ss_dssp             CCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCC
T ss_pred             ceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccC
Confidence            4579999999999999999999999999998 78999999 589999999999998753

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.30  E-value=7.3e-12  Score=87.25  Aligned_cols=57  Identities=23%  Similarity=0.310  Sum_probs=52.1

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEE--eCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|+|.++.++||+|++||+|.|+.. ++|||.|+  .+|+.|+||++||+.+.
T Consensus       441 ~~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~  500 (526)
T 2de0_X          441 NAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKI  500 (526)
T ss_dssp             CCCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             cccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcc
Confidence            34579999999999999999999999999988 89999999  48999999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.28  E-value=1.3e-11  Score=84.04  Aligned_cols=58  Identities=29%  Similarity=0.556  Sum_probs=51.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeC-CeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIG-DRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~-g~~G~~P~~~v~~~~   64 (95)
                      ..+..++|+|||.++.+++|+|++||++.++..  +++||.++.. |+.|+||++||++..
T Consensus         9 ~~~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~   69 (450)
T 1k9a_A            9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE   69 (450)
T ss_dssp             CTTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECC
T ss_pred             CCCCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhcccccc
Confidence            345689999999999999999999999999987  5789999974 999999999999754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.28  E-value=9.3e-12  Score=86.46  Aligned_cols=54  Identities=37%  Similarity=0.805  Sum_probs=50.6

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      .++|+|||+++.+++|+|.+||++.|+.. +++||.++.  +|+.|+||++||+...
T Consensus        87 ~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~  143 (535)
T 2h8h_A           87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD  143 (535)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccc
Confidence            58999999999999999999999999998 899999998  8999999999999753

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.27  E-value=6.9e-12  Score=85.41  Aligned_cols=55  Identities=36%  Similarity=0.790  Sum_probs=50.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|||+++.+++|+|++||++.|+.. +++||.++.  +|+.|+||++|+....
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~   60 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccc
Confidence            468999999999999999999999999988 899999998  8999999999998753

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.26  E-value=1.2e-11  Score=81.06  Aligned_cols=53  Identities=32%  Similarity=0.636  Sum_probs=49.8

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      ..++|+|||.++.+++|+|.+||+|.|+.. +.+||.+++ +|+.|+||.+||+.
T Consensus       148 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~  202 (308)
T 3qwy_A          148 EVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  202 (308)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEE
T ss_pred             eeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEeccccccc
Confidence            479999999999999999999999999998 789999996 99999999999993

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.24  E-value=1.2e-11  Score=77.29  Aligned_cols=54  Identities=22%  Similarity=0.621  Sum_probs=46.4

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .++|+|+|.++.+++|+|++||++.++..  +.+||.++.+|+.|+||.+|+....
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCccccccc
Confidence            58999999999999999999999999886  4789999999999999999998643

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.24  E-value=2.5e-11  Score=82.65  Aligned_cols=56  Identities=27%  Similarity=0.656  Sum_probs=51.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEE--eCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~--~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||.++.+++|+|++||++.|+..+++||.++  .+|+.|+||++||....
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~W~~~~~~~~g~~G~~P~~yv~~~~   65 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD   65 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEecCCCCeEEEECCCCceEEecchhccccc
Confidence            457999999999999999999999999998878899999  58999999999998754

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.23  E-value=1.2e-11  Score=66.41  Aligned_cols=51  Identities=14%  Similarity=0.344  Sum_probs=45.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c--CCEEEEEe----CCeEEEEcCCCe
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTI----GDRTGLFPSNYV   60 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~--~~w~~~~~----~g~~G~~P~~~v   60 (95)
                      ..+.++|||.+...++|+|++|+.+.|+.. .  ++||.++.    .+++|++|++|+
T Consensus        18 e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             eEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            357899999999999999999999999987 3  78999996    337899999998

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.85  E-value=1.2e-12  Score=85.78  Aligned_cols=56  Identities=23%  Similarity=0.399  Sum_probs=50.0

Q ss_pred             cEEEEeccCCCCC--CCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTE--PGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~--~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|||.++.  +++|+|.+||+|.|+.+ +++||.|+.+|+.|+||++||+.+..
T Consensus       238 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~  296 (303)
T 2lqn_A          238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP  296 (303)
Confidence            4689999998554  77999999999999998 78999999999999999999998753

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.20  E-value=7.9e-12  Score=66.75  Aligned_cols=46  Identities=24%  Similarity=0.722  Sum_probs=41.8

Q ss_pred             CCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083          20 STEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        20 ~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ++..++|+|.+|++|.|+.. +.+||.++.+|+.|+||++||+.+..
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   48 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   48 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCC
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCC
Confidence            45788999999999999998 88999999999999999999998763

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.19  E-value=4.5e-11  Score=82.34  Aligned_cols=56  Identities=21%  Similarity=0.514  Sum_probs=50.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|||++..+++|+|++||++.|+..  +.+||.++..|..|+||++|+....
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~  100 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN  100 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESS
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceeccccccccc
Confidence            3469999999999999999999999999986  5789999998999999999998754

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.15  E-value=3.5e-12  Score=83.64  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=0.0

Q ss_pred             cEEEEeccCCC--CCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDS--TEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~--~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ..++++|+|.+  ..+++|+|.+||+|.|+.. +++||.|+.+|+.|+||.+||+.+.
T Consensus       248 ~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~  305 (308)
T 3qwy_A          248 AKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTA  305 (308)
T ss_dssp             ----------------------------------------------------------
T ss_pred             cccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEEec
Confidence            46789999954  5569999999999999998 8999999999999999999998875

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.76  E-value=3.9e-12  Score=83.29  Aligned_cols=56  Identities=29%  Similarity=0.687  Sum_probs=51.5

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|||.++..++|+|.+||+|.|+.. +.+||.+++ +|+.|+||++||+.+..
T Consensus       126 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~  183 (303)
T 2lqn_A          126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVR  183 (303)
Confidence            468999999999999999999999999998 889999995 89999999999998753

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.08  E-value=4e-10  Score=57.60  Aligned_cols=40  Identities=23%  Similarity=0.705  Sum_probs=37.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI   48 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~   48 (95)
                      ...++|+|||.++.+++|+|.+|++|.|+.. +.+||.++.
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            4579999999999999999999999999998 889999985

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.06  E-value=1.4e-11  Score=85.04  Aligned_cols=55  Identities=25%  Similarity=0.595  Sum_probs=0.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEeC-CeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTIG-DRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~-g~~G~~P~~~v~~~   63 (95)
                      +..++|+|||.+..+++|+|.+||+|.|+.. + .+||.|+.. |+.|+||++||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            3468999999999999999999999998887 4 589999986 99999999999764

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=99.02  E-value=6.1e-11  Score=77.47  Aligned_cols=53  Identities=30%  Similarity=0.579  Sum_probs=46.4

Q ss_pred             cEEEEeccCCCCCCC-----CceecCCCEEEEEec-cCCEEEEEeC------CeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPG-----DLTFNQDEVIYVTKK-ENDWWTGTIG------DRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~-----~l~~~~g~~i~v~~~-~~~w~~~~~~------g~~G~~P~~~v~~   62 (95)
                      .+++|+|||+++.++     +|+|++||++.|+.. +.+||.++..      ++.|+||++|+.+
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            368999999988777     999999999999998 8999999973      2789999999864

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.99  E-value=2.8e-10  Score=63.09  Aligned_cols=54  Identities=11%  Similarity=0.080  Sum_probs=45.4

Q ss_pred             EEEEeccC--CCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083          11 YYIAAYPY--DSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        11 ~~~al~~~--~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      .+.++++|  ......+|.|++|+.+.|+.. +.+||.+++ .|+.|++|.+|+..++
T Consensus        41 ~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           41 STKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             CCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC--
T ss_pred             EEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccc
Confidence            45667777  566788999999999999998 789999998 9999999999997654

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.86  E-value=3.2e-09  Score=70.35  Aligned_cols=51  Identities=27%  Similarity=0.623  Sum_probs=44.6

Q ss_pred             ccEEEEeccCCCCCCCC-------ceecCCCEEEEEec-cCCEEEEEe---CCeEEEEcCCC
Q psy7083           9 QEYYIAAYPYDSTEPGD-------LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPSNY   59 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~-------l~~~~g~~i~v~~~-~~~w~~~~~---~g~~G~~P~~~   59 (95)
                      ..+++|+|||++..+++       |+|.+||++.|+.. +.+||.++.   +|..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            45799999999987654       99999999999998 789999997   56789999977

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.85  E-value=2.7e-09  Score=76.10  Aligned_cols=56  Identities=23%  Similarity=0.455  Sum_probs=47.3

Q ss_pred             ccEEEEeccCC---CCCCCCceecCCCEEEEEec------cCCEEEEE--eCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYD---STEPGDLTFNQDEVIYVTKK------ENDWWTGT--IGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~---~~~~~~l~~~~g~~i~v~~~------~~~w~~~~--~~g~~G~~P~~~v~~~~   64 (95)
                      ..+++|++||.   +.+++.|+|++||+|.+...      +++||.|+  .+|+.|+||.+||..+.
T Consensus       573 s~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lp  639 (655)
T 3pvl_A          573 SKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMP  639 (655)
T ss_dssp             CCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             chhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECC
Confidence            45899999998   67889999999999988765      48999999  48999999999999875

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.78  E-value=3.9e-09  Score=58.04  Aligned_cols=52  Identities=19%  Similarity=0.257  Sum_probs=45.0

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c--CCEEEEEe-CCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~--~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      ..++|+++ ...+..+|+|.+|+.+.|+.. +  .+||.+++ .|..|++|.+|+..
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            36788887 456888999999999999998 3  67999997 99999999999975

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.77  E-value=7.4e-08  Score=52.36  Aligned_cols=58  Identities=19%  Similarity=0.429  Sum_probs=46.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c----CCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E----NDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~----~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      ..+.+..++.+...-+|.+.+||++.|+.+ |    ..||.+...|..||+|++|++.+....
T Consensus        18 ~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~   80 (92)
T 1ug1_A           18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             heEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCC
Confidence            345666667777888999999999999997 4    456667779999999999999987443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.70  E-value=3e-08  Score=62.03  Aligned_cols=55  Identities=18%  Similarity=0.582  Sum_probs=48.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cC---CEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-EN---DWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~---~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ....++++|.+..+.++.+..|+.+.++.+ +.   +||.++..|+.|+||.+|++.+.
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~  229 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP  229 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence            457889999999999999999999999887 43   49999999999999999998764

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.55  E-value=7.7e-08  Score=63.21  Aligned_cols=53  Identities=17%  Similarity=0.369  Sum_probs=43.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCC---------EEEEEe---CC---eEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-END---------WWTGTI---GD---RTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~---------w~~~~~---~g---~~G~~P~~~v~~   62 (95)
                      .+++|+|||+++.+++|+|.+||++.|+.. +++         ||.++.   .+   ..|++|++|+.+
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            477899999999999999999999999997 554         999986   22   679999988764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.55  E-value=8.5e-08  Score=69.01  Aligned_cols=54  Identities=30%  Similarity=0.565  Sum_probs=46.3

Q ss_pred             ccEEEEeccCCCCCCCC-----ceecCCCEEEEEec-cCCEEEEEeC------CeEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGD-----LTFNQDEVIYVTKK-ENDWWTGTIG------DRTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~-----l~~~~g~~i~v~~~-~~~w~~~~~~------g~~G~~P~~~v~~   62 (95)
                      ..+++|+|||++..+++     |+|++||++.|+.. +.+||.++..      +..|+||++|+.+
T Consensus       427 ~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          427 GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             ceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            34679999999998888     99999999999998 8899999962      3469999998854

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.54  E-value=1.2e-07  Score=64.02  Aligned_cols=54  Identities=24%  Similarity=0.473  Sum_probs=46.2

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec----cCCEEEEEe-CC-----eEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTI-GD-----RTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----~~~w~~~~~-~g-----~~G~~P~~~v~~   62 (95)
                      ..+++|+|||++..+.+|+|.+||++.|+..    +.+||.++. ..     ..|++|++|+.+
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            4578899999999999999999999999987    468999996 22     479999998865

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.47  E-value=1.9e-07  Score=60.93  Aligned_cols=51  Identities=25%  Similarity=0.670  Sum_probs=37.2

Q ss_pred             ccEEEEeccCCCCCCC-----CceecCCCEEEEEec-cCCEEEEEe------CCeEEEEcCCC
Q psy7083           9 QEYYIAAYPYDSTEPG-----DLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNY   59 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~-----~l~~~~g~~i~v~~~-~~~w~~~~~------~g~~G~~P~~~   59 (95)
                      ..+++|+|||++..++     .|+|++||++.|... +.+||.++.      ....|++|+..
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChH
Confidence            3589999999987654     599999999999999 899999985      22479999853

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.43  E-value=4.8e-07  Score=62.40  Aligned_cols=54  Identities=22%  Similarity=0.434  Sum_probs=46.3

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec----cCCEEEEEe---CC---eEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTI---GD---RTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----~~~w~~~~~---~g---~~G~~P~~~v~~   62 (95)
                      ..+++++|+|.+..+.+|+|++||++.|+..    +.+||.++.   .+   ..|++|++|+.+
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            3478899999999999999999999999986    368999996   33   579999998864

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.41  E-value=7.4e-07  Score=57.89  Aligned_cols=52  Identities=12%  Similarity=0.171  Sum_probs=42.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ..++++|||.+.   ++++.+|+.+.++.. +..||.++. +|..|++|++|+....
T Consensus       199 ~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~  252 (283)
T 3pe0_A          199 LPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPP  252 (283)
T ss_dssp             EEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCS
T ss_pred             ceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCC
Confidence            578999999774   799999999999998 778999996 8889999999997644

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.29  E-value=1.1e-06  Score=53.96  Aligned_cols=54  Identities=37%  Similarity=0.865  Sum_probs=48.7

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      ...+.++|+|.++...++.+..|+++.+... +.+||.+...|..|++|.+|+..
T Consensus        14 ~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~   68 (222)
T 3ehr_A           14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   68 (222)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHH
T ss_pred             ceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccc
Confidence            3468999999999999999999999999888 78999999999999999887753

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.89  E-value=2.4e-05  Score=53.84  Aligned_cols=53  Identities=17%  Similarity=0.134  Sum_probs=45.8

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ...+.+++||.   ..++++.+|+.+.++.. +..||.++. +|..|++|+.|+....
T Consensus       283 ~~~V~alcdy~---~~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipp  337 (450)
T 3r6n_A          283 PIILRALCDYK---QDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPP  337 (450)
T ss_dssp             CCEEEESSCEE---ETTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCS
T ss_pred             CceEEEecccc---CCeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCC
Confidence            45789999998   47899999999999988 789999996 7899999999997543

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.67  E-value=1.9e-07  Score=61.96  Aligned_cols=51  Identities=10%  Similarity=0.149  Sum_probs=37.8

Q ss_pred             EEeccCCC----CCCCCcee--cCCCEEEEEec-cCCEEEEEe---CCeEEEEcCC-CeEEc
Q psy7083          13 IAAYPYDS----TEPGDLTF--NQDEVIYVTKK-ENDWWTGTI---GDRTGLFPSN-YVVPY   63 (95)
Q Consensus        13 ~al~~~~~----~~~~~l~~--~~g~~i~v~~~-~~~w~~~~~---~g~~G~~P~~-~v~~~   63 (95)
                      .++|+|.+    ....+|.+  ..||+|.|+.. +.|||.|+.   .|+.|+||.+ ||...
T Consensus       270 ~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~  331 (341)
T 2dyb_A          270 KDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQK  331 (341)
T ss_dssp             HHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEEC
T ss_pred             hhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEec
Confidence            35666665    34445555  89999999998 899999986   4555699998 77654

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=97.18  E-value=0.0031  Score=32.78  Aligned_cols=42  Identities=12%  Similarity=0.334  Sum_probs=35.3

Q ss_pred             eecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCeEEccCCcc
Q psy7083          27 TFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQVD   68 (95)
Q Consensus        27 ~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~   68 (95)
                      .+.+|+.+.++....+|++.+.+|..||+...|+........
T Consensus        26 ~l~~G~~v~v~~~~~~W~kV~~~g~~GwV~~~yl~~~~~~~~   67 (74)
T 2krs_A           26 TLRNNDKVEIIKEVDGWYEIRFNGKVGYASKSYITIVNEGSL   67 (74)
T ss_dssp             EEETTCEEEEEEEETTEEEEEETTEEEEECSSSEEESSSSCC
T ss_pred             EECCCCEEEEEEEeCCEEEEEECCeEEEEEhHHcCCCCCccc
Confidence            678899999988777899999889999999999987654433

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=97.05  E-value=0.0029  Score=33.11  Aligned_cols=41  Identities=10%  Similarity=0.284  Sum_probs=35.0

Q ss_pred             eecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083          27 TFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus        27 ~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      .+..|+.+.++....+|++.+.+|..||+...|+.......
T Consensus        28 ~l~~G~~v~vl~~~~~W~kV~~~g~~GwV~~~yl~~~~~~~   68 (76)
T 2kt8_A           28 SLSGNTKVTIVGEEGAFYKIEYKGSHGYVAKEYIKDIKDEV   68 (76)
T ss_dssp             EECTTCEEEEEEEETTEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             EECCCCEEEEEEEeCCEEEEEECCEEEEEEhHHhCcCCCcc
Confidence            67789999998887789999999999999999998765433

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=96.22  E-value=0.0021  Score=33.04  Aligned_cols=38  Identities=18%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             eecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083          27 TFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus        27 ~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .+.+|+.+.++....+|++.+.+|..||+...|+...+
T Consensus        27 ~l~~G~~v~v~~~~~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISENSGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEEETTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEecCCEEEEEECCEEEEEEhHHccchh
Confidence            56788888887777789999999999999999986543

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=95.15  E-value=0.14  Score=26.33  Aligned_cols=51  Identities=14%  Similarity=0.163  Sum_probs=39.4

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe------CCeEEEEcCCCe
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNYV   60 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~------~g~~G~~P~~~v   60 (95)
                      .......||.+..+++++...|+++.++.. ......+-.      ...+||+|..-+
T Consensus         8 s~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vL   65 (74)
T 1wfw_A            8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL   65 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGC
T ss_pred             ccEEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEe
Confidence            456668899999999999999999999987 556555543      235799997554

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=91.79  E-value=0.1  Score=26.92  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             cEEEEeccCCCCCCCCceecCC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQD   31 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g   31 (95)
                      ..++++|||+++..++|+|...
T Consensus        53 ~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A           53 ELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             CEEEESSCCCCSSCCCCCSCCC
T ss_pred             ceEEECCCcCCCCCCccccCCC
Confidence            5789999999999999998763

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=88.25  E-value=1  Score=29.13  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=30.9

Q ss_pred             ceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEc
Q psy7083          26 LTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPY   63 (95)
Q Consensus        26 l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~   63 (95)
                      -.+..|+.+.|+..+ +|.+.+. +|..||++..++...
T Consensus        35 ~~l~~G~~v~Vl~~~-gW~~V~~~dG~~GwV~~~~l~~~   72 (306)
T 3npf_A           35 TQALLGMPVKVLQYN-GWYEIQTPDDYTGWVHRMVITPM   72 (306)
T ss_dssp             EEEETTCEEEEEEES-SEEEEECTTSCEEEEEGGGEEEE
T ss_pred             EEEcCCCEEEEEEEC-CEEEEEcCCCCEEEEEhHHeeec
Confidence            466789999998874 6999997 889999999988753

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=87.26  E-value=1.4  Score=28.76  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             eecCCCEEEEEeccCCEEEEEe---------CCeEEEEcCCCeEE
Q psy7083          27 TFNQDEVIYVTKKENDWWTGTI---------GDRTGLFPSNYVVP   62 (95)
Q Consensus        27 ~~~~g~~i~v~~~~~~w~~~~~---------~g~~G~~P~~~v~~   62 (95)
                      .+..|+.+.|++++.+|.+++.         .|-.||++..++..
T Consensus        63 qll~Ge~V~Vl~~~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~  107 (311)
T 3h41_A           63 QALLGQEVTVVDKKGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTY  107 (311)
T ss_dssp             EEETTCEEEEEEEETTEEEEEETTCCBTTBSSCEEEEEEGGGEEC
T ss_pred             eecCCCEEEEEEeeCCEEEEEECCcccccCCCCcEEEEEHHHcCc
Confidence            4556999999988889999985         77889999988764

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=83.22  E-value=0.92  Score=25.99  Aligned_cols=27  Identities=11%  Similarity=0.411  Sum_probs=18.8

Q ss_pred             CCceecCCCEEEEEec-cC----CEEEEEeCC
Q psy7083          24 GDLTFNQDEVIYVTKK-EN----DWWTGTIGD   50 (95)
Q Consensus        24 ~~l~~~~g~~i~v~~~-~~----~w~~~~~~g   50 (95)
                      ....|..|+.+.+..+ ++    |||.|+...
T Consensus        57 ~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~   88 (128)
T 3h8z_A           57 YNKEITEGDEVEVYSRANEQEPCGWWLARVRM   88 (128)
T ss_dssp             ---CCCTTCEEEEEECC---CCCEEEEEEEEE
T ss_pred             cccCCCCCCEEEEEecCCCCCcCccEEEEEEE
Confidence            3467899999999887 44    899998633

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=80.42  E-value=4.5  Score=26.08  Aligned_cols=39  Identities=5%  Similarity=0.083  Sum_probs=33.0

Q ss_pred             ceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083          26 LTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        26 l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      ..+..|..+.++....+|++... +|..||++..++....
T Consensus       107 ~~l~~Gt~v~v~~~~~~W~kV~~pdG~~GyV~~~~l~~~~  146 (306)
T 3npf_A          107 SDVVAGNRLKWEGSKGHFYQVSYPDGRKAYLSKSISQPEA  146 (306)
T ss_dssp             EEEETTCEEEEEEEETTEEEEECTTSCEEEEETTSEEEHH
T ss_pred             EEEcCCCEEEEEeecCCEEEEEcCCCCeEEEEeeccceee
Confidence            57789999988877788999986 8899999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-21
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-17
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	8e-17
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-16
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-16
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-16
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	4e-16
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	4e-16
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	7e-16
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	1e-15
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	1e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-15
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-15
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-15
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	4e-15
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	5e-15
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	7e-15
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	7e-15
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	8e-15
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	1e-14
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	2e-14
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-14
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	3e-14
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	4e-14
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	4e-14
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-14
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	7e-14
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	1e-13
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-13
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	3e-13
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	3e-13
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-13
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	1e-12
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	5e-12
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	2e-11
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	3e-11
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-11
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	4e-11
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	7e-11
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	5e-10
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	9e-10
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-09
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	6e-09
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	9e-09
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	1e-08
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	6e-08
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	9e-08
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	6e-06

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (191), Expect = 2e-21
 Identities = 36/56 (64%), Positives = 45/56 (80%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
          E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 9  EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS 64

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 67.4 bits (165), Expect = 2e-17
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPY 63
          +  A + ++  E G+L F + +VI +  K++  WW G + +R G+FPSNYV PY
Sbjct: 4  FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 8e-17
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQ 66
          + E Y+A   Y + E  +++  + E + V  K  D WW     D TG FPS Y+      
Sbjct: 13 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQD 72

Query: 67 VDQQADLIR 75
          V Q    I+
Sbjct: 73 VSQAQRQIK 81

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 1e-16
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
           Q    A + +  T   +L+  + ++IYVT+  E  WW GT+  RTG FPSNYV   ++ 
Sbjct: 9  HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSS 68

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (160), Expect = 1e-16
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 62
          Y  A + +D  E G+L F + + I+V    +  WW G    +TG+FP NYV P
Sbjct: 3  YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 55

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 1e-16
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
             A   + + +   L F++ ++I V +++ +WW G +    G FP +YV
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYV 61

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.0 bits (156), Expect = 4e-16
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          E  +A Y Y    P ++T  + +++ +    N  WW   + DR G  P+ YV
Sbjct: 1  ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 52

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (157), Expect = 4e-16
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 5  QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-----ENDWWTGTIGDRTGLFPSNY 59
          +    + Y A Y + +  P +L+ + ++ + + +        +WW   +  + G  PSNY
Sbjct: 9  EAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNY 68

Query: 60 VVPYEA 65
          +   E+
Sbjct: 69 IRKTES 74

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 7e-16
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 62
              A + Y++T+P DL F + ++I V  K N+ W  G    + G+FP  +V  
Sbjct: 6  SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (153), Expect = 1e-15
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYVVPY 63
          EY  A + ++  +  DL F + +++ +  K  + WW     + + G+ P  YV  Y
Sbjct: 2  EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (152), Expect = 1e-15
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 62
          +  A Y +++ E  +L F   EV+ V       WWTG + ++ GLFP+NYV P
Sbjct: 3  WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (154), Expect = 2e-15
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
               IA Y Y +    +L+F++ ++I V  K++  WW G I   TGLFPSNYV
Sbjct: 33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (152), Expect = 2e-15
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN--DWWTGTIGDRTGLFPSNYVVP 62
           ++A Y + ++    L+  + E + V    +  +W      +  G  PSNY+ P
Sbjct: 2  LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 55

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 3e-15
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYVVPYEAQ 66
            Y A YP+++    +++FN  ++I V +K      W  G+     G FP NYV    + 
Sbjct: 6  SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS 65

Query: 67 VDQQA 71
           +++A
Sbjct: 66 ENEKA 70

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 4e-15
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW--TGTIGDRTGLFPSNYVVP 62
          L     IA + Y+ +  GDL F + E + + ++  +WW        + G  P N+V  
Sbjct: 4  LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (149), Expect = 5e-15
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 7  LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYVVP 62
          +++    A + Y+     +L   + + + +  +E++    WW   + D+ G  P N +  
Sbjct: 2  MNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 61

Query: 63 Y 63
          Y
Sbjct: 62 Y 62

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (149), Expect = 7e-15
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 64
          +  +A Y Y      DL   + +  ++ ++ N  WW     + + G  PSNYV   E
Sbjct: 9  KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.8 bits (148), Expect = 7e-15
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
           A Y +++ E  +LTF   E+I V    +  WW G     TGLFPSN+V
Sbjct: 6  RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 54

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 8e-15
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 64
          +   +A Y Y++    DL+F + + + V ++  +WW        + G  PSNYV   +
Sbjct: 4  RIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 61

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (147), Expect = 1e-14
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 64
           E  +A Y + +TE  DL   + +   + +K +  WW         G  PSNYV   +
Sbjct: 2  SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (145), Expect = 2e-14
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW---TGTIGDRTGLFPSNYVVP 62
          ++A Y Y++    DL+F++ E   +       W          TG  PSNYV P
Sbjct: 3  FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-14
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYVVPYE 64
          ++A Y Y+S    DL+F + E + +       WW        +TG  PSNYV P +
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (144), Expect = 3e-14
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
          IA Y + +T   +L+F + +++ V  +E D  W+   +  + G  P NY+
Sbjct: 4  IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 53

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (144), Expect = 4e-14
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRT-GLFPSNYVVPYEAQ 66
          +    A + Y +    +LTF +  +I   +K+   WW G  G +    FPSNYV      
Sbjct: 6  KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP 65

Query: 67 VDQQAD 72
               D
Sbjct: 66 EGIHRD 71

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (143), Expect = 4e-14
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYV 60
            +A Y +   E GDL F + +VI + KK +    WWTG +  R G+FP+NYV
Sbjct: 3  KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 55

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 5e-14
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-----TGLFPSNYVV 61
          S E       Y ++    L+    ++I + KK    WW G +  R      G FP+++V 
Sbjct: 6  SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65

Query: 62 PYEAQVDQQA 71
                ++ +
Sbjct: 66 LLGPSSERAS 75

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (142), Expect = 7e-14
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWWTGTIGD--RTGLFPSNYVVPY 63
          Y    P        L  N  +++ +TK E  ++WW G        G FP N V PY
Sbjct: 13 YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY 68

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 1e-13
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYVVPYE 64
          S    IA Y +  T   DL F + +V+ +     D  W+       R G+ P+NYV   E
Sbjct: 5  SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 64

Query: 65 A 65
           
Sbjct: 65 G 65

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 2e-13
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYV 60
          + + + A Y Y + +  +++F   + I   +  ++ W  GT+    RTG+ P+NYV
Sbjct: 2  AGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (137), Expect = 3e-13
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYV 60
          +  A Y YD+ E  +LTF +++ I   +  +D WW G +      GLFPSNYV
Sbjct: 2  WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 3e-13
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGD-RTGLFPSNYVVPYE 64
                YP+ S    +L F + E + V +K  +   WW       + GL P NYVV   
Sbjct: 7  HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 3e-13
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN--DWWTGTIGDRTGLFPSNYV 60
              A Y   +    +L+F    V           W  GT+  +TGL P NYV
Sbjct: 11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 1e-12
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
          E Y+A   Y + E  +++  + E + V  K  D WW     D TG FPS Y+
Sbjct: 1  EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 52

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 5e-12
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 9  QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYE 64
          ++Y  + Y + +    +L+  +D+V+ +      WW        +G  P+N +    
Sbjct: 1  KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMR 57

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 2e-11
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYE 64
          + Y A   Y+ T   ++  +  +V+ V +K    WW   +  + G  P++++ P +
Sbjct: 3  QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 58

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (124), Expect = 3e-11
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 10 EYYIAAYPYDSTEP-GDLTFNQDEVIYVTKKEN------DWWTGTIGD-RTGLFPSNYV 60
          E+  A Y +    P  ++   + +++ +  K++      DWW     +   G  P NY+
Sbjct: 6  EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 64

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (124), Expect = 3e-11
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 8  SQEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTIG--DRTGLFPSNYV 60
          S +     +P+ +      L+F Q +V+ +   E    W  G        G FPS+Y 
Sbjct: 6  SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.9 bits (124), Expect = 4e-11
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 16/71 (22%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN------DWWTGTIGD----------RTG 53
              A + Y +T+  +L     +V+ V   +N       W  G                G
Sbjct: 13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 72

Query: 54 LFPSNYVVPYE 64
          +FP N+    +
Sbjct: 73 VFPENFTERVQ 83

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 7e-11
 Identities = 11/69 (15%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-----NDWWTGTIGDRTGLFPSNYVVP 62
           ++ + A   +++ +  D++  + +++ V KK+      + W    G   G   S+++ P
Sbjct: 16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKP 75

Query: 63 YEAQVDQQA 71
          Y  +     
Sbjct: 76 YNPRRSHSD 84

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 5e-10
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 13 IAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGD-RTGLFPSNYVV 61
          IA Y Y + +P +L    DE  Y +   E  WW     +   G  PS+Y+V
Sbjct: 2  IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (114), Expect = 9e-10
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYV 60
            Y Y   +  ++T    + I +  ++               TGL P+ Y+
Sbjct: 4  VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 54

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 5e-09
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 8  SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWW------TGTIGDRTGLFPSNYV 60
          S         Y + +  ++  +Q EV+ V    + +        +       G  P + +
Sbjct: 6  SGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL 65

Query: 61 VPY 63
           P+
Sbjct: 66 APF 68

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 6e-09
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 10 EYYIAAYPYDSTEP------GDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
             +A Y Y+  +        +L     + +YV    ++  ++ G + D + GL PSN+V
Sbjct: 18 HLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFV 77

Query: 61 VPYEAQVDQQAD 72
             +    + A 
Sbjct: 78 DFVQDNESRLAS 89

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 9e-09
 Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 18/67 (26%)

Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK----------------ENDWWTGTI--GDRTG 53
          Y A Y Y      D+  +  +++ V K                 E  W  G        G
Sbjct: 6  YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 65

Query: 54 LFPSNYV 60
           FP  YV
Sbjct: 66 DFPGTYV 72

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 46.1 bits (109), Expect = 1e-08
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 11 YYIAAYPYDSTEPGD-------LTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNY 59
                 Y + +  D       ++F   + ++V +K N DWW G +   G   G  PS  
Sbjct: 23 AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV 82

Query: 60 VVPY-EAQVDQQA 71
           +     Q +Q+A
Sbjct: 83 KLENMRLQHEQRA 95

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 6e-08
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 12/73 (16%)

Query: 11 YYIAAYPYDSTE-----PGDLTFNQDEVIYVTKKEND-WWTGTIGD------RTGLFPSN 58
          Y  A + YD T+        L+F   +V++V    ++ WW              G  PS 
Sbjct: 3  YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSK 62

Query: 59 YVVPYEAQVDQQA 71
            V        +A
Sbjct: 63 RRVERREWSRLKA 75

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 9e-08
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 12/76 (15%)

Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN----DWWTGTIGD--------RTGLFPS 57
             +A   Y + +   LT ++ +V+YV  K       +W G++          R G FPS
Sbjct: 22 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 81

Query: 58 NYVVPYEAQVDQQADL 73
          + V   +     + D+
Sbjct: 82 SIVREDQTLKPGKVDV 97

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 6e-06
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 14 AAYPYDSTEPG-------DLTFNQDEVIYVTKKEND-WWTGTI---GDRTGLFPSNYVVP 62
              Y              ++F+  + +++ +K N+ WW G +   G   G  PS   + 
Sbjct: 28 TNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLE 87

Query: 63 YEAQVDQQ 70
                +Q
Sbjct: 88 NIRIQQEQ 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.76
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.76
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.76
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.75
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.74
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.73
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.71
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.71
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.71
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.7
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.7
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.7
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.7
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.7
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.69
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.69
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.69
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.69
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.68
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.68
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.68
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.68
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.67
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.67
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.66
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.65
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.65
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.65
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.65
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.64
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.64
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.63
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.63
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.63
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.62
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.58
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.58
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.55
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.53
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.52
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.5
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.5
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.45
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.37
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.15
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.99

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.4e-18  Score=87.09  Aligned_cols=54  Identities=37%  Similarity=0.826  Sum_probs=50.9

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .+++|+|+|.++.+++|+|.+||.+.++.. +++||.++.+|+.|+||++|++++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            478999999999999999999999999998 789999999999999999999875

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.1e-18  Score=86.18  Aligned_cols=54  Identities=37%  Similarity=0.863  Sum_probs=50.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .+++|+++|.++.+++|+|.+||++.|+.. +++||.++.+|+.|+||++|++++
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            468999999999999999999999999998 789999999999999999999864

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.76  E-value=2.5e-18  Score=86.46  Aligned_cols=54  Identities=39%  Similarity=1.003  Sum_probs=51.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .+++|+|+|.++.+++|+|.+|++|.|+.. +.+||.|+.+|+.|+||++|++++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            578999999999999999999999999998 789999999999999999999865

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3e-18  Score=90.13  Aligned_cols=63  Identities=21%  Similarity=0.487  Sum_probs=56.0

Q ss_pred             ccCCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCeEEccCCc
Q psy7083           5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus         5 ~~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~   67 (95)
                      ......+++|+|+|.++.+++|+|.+||+|.|+..+++||.++.+|+.|+||.+||+.+....
T Consensus         6 ~~~~~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~~~~ww~g~~~g~~G~fP~~yve~i~~~~   68 (74)
T d1j3ta_           6 SGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYVKIIPGSE   68 (74)
T ss_dssp             CCCCCCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSEEEEESTTCCCEEEGGGEEECCCST
T ss_pred             CCCCCeEEEEccCCCCCCCCEecCCCCCEEEEEEccCCeEEEEECCcEEEEchhhEEECCCCC
Confidence            344567899999999999999999999999999887789999999999999999999886443

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.6e-18  Score=85.48  Aligned_cols=53  Identities=38%  Similarity=0.758  Sum_probs=49.9

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeE
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV   61 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~   61 (95)
                      +..++|+|+|.++.+++|+|++||++.|+.. +.+||.++.+|+.|+||++||+
T Consensus         2 ~rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   55 (58)
T d1uj0a_           2 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT   55 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEe
Confidence            3579999999999999999999999999998 7899999999999999999986

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=8.1e-18  Score=83.76  Aligned_cols=53  Identities=26%  Similarity=0.725  Sum_probs=49.7

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .++|+|+|.++.+++|+|++|+.+.++.. +++||.++.+|+.|+||++|++.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            47899999999999999999999999998 789999999999999999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.8e-18  Score=87.42  Aligned_cols=56  Identities=29%  Similarity=0.635  Sum_probs=51.8

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .+..++|+|+|.++.+++|+|.+||+|.|+.. +.+||.++.+|+.|+||++||++.
T Consensus         4 ~g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            45679999999999999999999999999998 899999999999999999999754

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.6e-17  Score=82.08  Aligned_cols=51  Identities=31%  Similarity=0.601  Sum_probs=48.0

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeE
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV   61 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~   61 (95)
                      .++|+++|.++.+++|+|.+|+++.|+.+ +++||.++.+|+.|+||++|++
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            46899999999999999999999999998 7899999999999999999985

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.7e-18  Score=89.19  Aligned_cols=57  Identities=39%  Similarity=0.765  Sum_probs=52.6

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ....++|+|||.++.+++|+|.+||+|.|+.+ +.+||.++.+++.|+||.+||+.+.
T Consensus         9 ~~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~   66 (76)
T d1ujya_           9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIK   66 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECC
T ss_pred             CCEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECC
Confidence            34578999999999999999999999999998 7899999999999999999999875

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=87.38  Aligned_cols=63  Identities=24%  Similarity=0.394  Sum_probs=54.4

Q ss_pred             cccCCccEEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEeCCeEEEEcCCCeEEccCC
Q psy7083           4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTIGDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         4 ~~~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~g~~G~~P~~~v~~~~~~   66 (95)
                      ....+..+++|+|+|.++.+++|+|.+||+|.|+.. + .+||.++.+|+.|+||.+||+.+..+
T Consensus         5 s~~~p~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_           5 SSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             SSCCSCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CCCCCCEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCCC
Confidence            334455689999999999999999999999998886 4 57999999999999999999988643

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.4e-18  Score=92.97  Aligned_cols=57  Identities=40%  Similarity=0.749  Sum_probs=52.7

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ..+++|+|||+++.+++|+|++||+|.|+.. +++||.++.+|+.|+||.+||+.+..
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~   91 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTD   91 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCC
Confidence            3479999999999999999999999999988 89999999999999999999988764

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.3e-17  Score=82.63  Aligned_cols=53  Identities=26%  Similarity=0.706  Sum_probs=49.2

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      .+++|+|||.++.+++|+|++||+|.|+.. +++||.++. +|+.|+||++|+++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            578999999999999999999999999998 789999996 78999999999975

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.2e-17  Score=86.57  Aligned_cols=58  Identities=62%  Similarity=1.181  Sum_probs=52.9

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|++..+++|+|++||++.|+..+++||.++++++.|+||.+||+.+.
T Consensus         6 ~~~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~~~Ww~~~~~g~~G~vP~~yv~~~~   63 (69)
T d1uhfa_           6 SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKD   63 (69)
T ss_dssp             CCSEEEECSSCBCCSSSSBCCBCTTCEEEECEEETTEEEECSTTCCEEECGGGCEECC
T ss_pred             CCCcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCEEEEEECCcEEEEchhhEEECC
Confidence            3456899999999999999999999999998777789999999999999999999875

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=3.3e-17  Score=82.33  Aligned_cols=53  Identities=40%  Similarity=0.797  Sum_probs=49.2

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      +++|+|+|.++.+++|+|++||.+.++.. +++||.+++  +|+.|+||++||+.+
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            58999999999999999999999999998 789999996  779999999999865

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.4e-16  Score=84.81  Aligned_cols=62  Identities=23%  Similarity=0.449  Sum_probs=53.6

Q ss_pred             cCCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-----CCeEEEEcCCCeEEccCCc
Q psy7083           6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-----GDRTGLFPSNYVVPYEAQV   67 (95)
Q Consensus         6 ~~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-----~g~~G~~P~~~v~~~~~~~   67 (95)
                      ...+..++|+|+|.+..+++|+|.+||+|.|+.+ +.+||.++.     .++.||||.+||+.+....
T Consensus         4 ~~~g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~   71 (80)
T d1ue9a_           4 GSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSS   71 (80)
T ss_dssp             SSCCEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCC
T ss_pred             CCCCCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCC
Confidence            3445789999999999999999999999999998 889999985     3468999999999876443

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=6.2e-17  Score=83.51  Aligned_cols=59  Identities=27%  Similarity=0.506  Sum_probs=52.1

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEccCCcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEAQVD   68 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~~~~   68 (95)
                      ..++|+|+|.+..+++|+|++||++.++.. +.+||.++. +|+.|+||++||+.+.....
T Consensus         3 ~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~~~   63 (67)
T d1gl5a_           3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNNL   63 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTTTT
T ss_pred             EEEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCCCc
Confidence            458999999999999999999999999998 789999985 78999999999987654433

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.4e-18  Score=85.28  Aligned_cols=54  Identities=24%  Similarity=0.623  Sum_probs=50.4

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|||.++.+++|+|++||++.++.+ +.+||.++.+|+.|+||++|++++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            468999999999999999999999999998 899999999999999999999764

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=83.48  Aligned_cols=60  Identities=28%  Similarity=0.520  Sum_probs=52.3

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEe-CCeEEEEcCCCeEEccCC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTI-GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~-~g~~G~~P~~~v~~~~~~   66 (95)
                      .++..|+|+|+|.+..+++|+|.+||+|.|+..  +.+||.+++ .|+.|+||.+||+.+...
T Consensus         4 p~g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~~   66 (71)
T d1k9aa1           4 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV   66 (71)
T ss_dssp             CTTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             CCCCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEcccC
Confidence            445789999999999999999999999999886  467999986 689999999999987643

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-17  Score=91.55  Aligned_cols=57  Identities=30%  Similarity=0.540  Sum_probs=52.9

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      .+..++|+|+|.+..+++|+|.+||+|.|+.. +++||.|+.+|+.||||.+||+.+.
T Consensus        13 ~g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          13 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSG   70 (118)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETT
T ss_pred             CCcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECC
Confidence            35688999999999999999999999999998 8899999999999999999999864

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=9.2e-17  Score=80.64  Aligned_cols=54  Identities=44%  Similarity=0.919  Sum_probs=49.0

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c--CCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~--~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .+++|+|+|.++.+++|+|.+||.+.|+.. +  .+||.++.+|+.|+||.+|++.+
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            368999999999999999999999999987 3  57999999999999999999864

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.3e-17  Score=81.76  Aligned_cols=52  Identities=23%  Similarity=0.661  Sum_probs=44.6

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec--cCCEEEEEeCCeEEEEcCCCeEE
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVP   62 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~--~~~w~~~~~~g~~G~~P~~~v~~   62 (95)
                      .++|+|+|.++.+++|+|.+||.+.++..  +++||.++.+|+.|+||++|++.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            58999999999999999999999998876  57899999999999999999963

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=5e-17  Score=81.92  Aligned_cols=56  Identities=18%  Similarity=0.486  Sum_probs=50.6

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      .+++|+|||.++.+++|+|.+||++.|+...++||.++. +|+.|+||++|++.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGGCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEcCCcEEEEEcCCCEEEECHHHeEECCC
Confidence            468999999999999999999999999887668999985 88999999999998763

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.68  E-value=3.5e-17  Score=80.82  Aligned_cols=51  Identities=33%  Similarity=0.679  Sum_probs=46.9

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEE
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVP   62 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~   62 (95)
                      ++|+|+|.++.+++|+|.+||.+.++.. +.+||.++. +|+.|+||++|+++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            5799999999999999999999999988 789999994 88999999999964

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.2e-16  Score=79.94  Aligned_cols=53  Identities=23%  Similarity=0.530  Sum_probs=47.8

Q ss_pred             EEEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        11 ~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      .++|+|+|.++.+++|+|++||++.++.+ + .+||.++..++.|+||++|++++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            47899999999999999999999999887 4 46888998999999999999875

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3e-17  Score=83.03  Aligned_cols=55  Identities=27%  Similarity=0.646  Sum_probs=50.0

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      +..++|+|||.++.+++|+|.+||++.++.. +++||.+++  +|+.|+||++|++.+
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            4668999999999999999999999999888 789999996  789999999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.4e-16  Score=83.67  Aligned_cols=60  Identities=15%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe------CCeEEEEcCCCeEEccCC
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~------~g~~G~~P~~~v~~~~~~   66 (95)
                      ..+..++|+|||.+..+++|+|.+||+|.|+.. +.+||.++.      .|+.||||++|++++..+
T Consensus         5 s~g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~p   71 (74)
T d1wfwa_           5 SSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGP   71 (74)
T ss_dssp             CCSCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCST
T ss_pred             CCCCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCC
Confidence            445789999999999999999999999999988 889999985      368999999999887644

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.8e-16  Score=82.82  Aligned_cols=59  Identities=22%  Similarity=0.379  Sum_probs=50.3

Q ss_pred             CCccEEEEeccCCCC-CCCCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083           7 LSQEYYIAAYPYDST-EPGDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         7 ~~~~~~~al~~~~~~-~~~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      ..+.+++|+|+|.+. .+++|+|++||+|.|+..  .++||.+++  .++.|+||.+||+.+..
T Consensus         5 ~~~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           5 SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCCCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            445689999999985 578899999999999865  478999986  57899999999998864

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.8e-16  Score=78.63  Aligned_cols=52  Identities=37%  Similarity=0.816  Sum_probs=47.8

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ++|+|||.++.+++|+|++||.+.++.. +++||.++.  +|+.|+||++|++++
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            6899999999999999999999999988 788999985  789999999999863

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.8e-16  Score=79.36  Aligned_cols=56  Identities=27%  Similarity=0.648  Sum_probs=49.4

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEE
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVP   62 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~   62 (95)
                      .+...++|+|||.++.+++|+|.+||+|.|+...++||.++.  +|+.|+||++||++
T Consensus         4 ~~~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TTTCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCCcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEeccCCeEeEEcHHHEEe
Confidence            445679999999999999999999999999988667888774  78999999999975

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-16  Score=80.84  Aligned_cols=54  Identities=19%  Similarity=0.574  Sum_probs=48.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c---CCEEEEEeCCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E---NDWWTGTIGDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~---~~w~~~~~~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|||.++.+++|+|++||++.++.. +   .+||.++.+|+.|+||++|++.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            468899999999999999999999999876 3   47999999999999999999754

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-16  Score=80.84  Aligned_cols=55  Identities=36%  Similarity=0.790  Sum_probs=49.8

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|||.++.+++|+|++||.+.++.. +++||.++.  +|+.|+||++|+++..
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~   60 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECc
Confidence            357999999999999999999999999988 788999986  6799999999998765

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.5e-16  Score=79.44  Aligned_cols=55  Identities=27%  Similarity=0.653  Sum_probs=49.7

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEeccCCEEEEEe--CCeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~~~~w~~~~~--~g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|||.++.+++|+|.+||.+.++..+++||.++.  +|+.|+||++|++.+.
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~~~~ww~~~~~~~g~~G~vP~~yv~~~~   61 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD   61 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEECCCCEEEEEccCCCEEEEchHHeEECc
Confidence            468899999999999999999999999988778999885  7899999999999875

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6e-16  Score=80.57  Aligned_cols=56  Identities=32%  Similarity=0.652  Sum_probs=50.3

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec-c--CCEEEEEe-CCeEEEEcCCCeEEccC
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTI-GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~--~~w~~~~~-~g~~G~~P~~~v~~~~~   65 (95)
                      ..++|+|+|.++.+++|+|.+||.|.|+.. +  .+||.++. +|+.|+||.+|++.+..
T Consensus         7 ~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~   66 (71)
T d1u5sa1           7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD   66 (71)
T ss_dssp             SEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCC
T ss_pred             EEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCC
Confidence            568999999999999999999999999986 3  58999985 78999999999998763

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.5e-16  Score=82.26  Aligned_cols=57  Identities=23%  Similarity=0.684  Sum_probs=51.4

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-----cCCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-----ENDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-----~~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ...++|+|+|.+..+++|+|.+||+|.|+..     ..+||.++..|+.|+||++||+.+..
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~   74 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCC
Confidence            4578999999999999999999999999975     26899999999999999999998763

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2.9e-16  Score=80.93  Aligned_cols=55  Identities=22%  Similarity=0.583  Sum_probs=47.8

Q ss_pred             ccEEEEeccCCCCCCC-CceecCCCEEEEEec-c-----CCEEEEEe-CCeEEEEcCCCeEEc
Q psy7083           9 QEYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK-E-----NDWWTGTI-GDRTGLFPSNYVVPY   63 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~-~l~~~~g~~i~v~~~-~-----~~w~~~~~-~g~~G~~P~~~v~~~   63 (95)
                      ..+++|+|+|.+++++ +|+|.+|++|.|+.+ +     .+||.++. +|+.|+||++||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            3579999999998765 899999999999886 3     48999996 889999999999864

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.6e-16  Score=84.09  Aligned_cols=58  Identities=19%  Similarity=0.444  Sum_probs=52.3

Q ss_pred             CccEEEEeccCCCCCCCCceecCCCEEEEEec-c----CCEEEEEeCCeEEEEcCCCeEEccC
Q psy7083           8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E----NDWWTGTIGDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         8 ~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~----~~w~~~~~~g~~G~~P~~~v~~~~~   65 (95)
                      ....++|+|+|.++.+++|+|.+||+|.|+.+ +    .+||.++.+|+.||||++||+++..
T Consensus        16 ~~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~   78 (92)
T d1ug1a_          16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNP   78 (92)
T ss_dssp             GGGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCC
T ss_pred             CCeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCC
Confidence            34578999999999999999999999999986 3    5799999999999999999998763

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.4e-16  Score=83.58  Aligned_cols=56  Identities=32%  Similarity=0.679  Sum_probs=50.7

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec---cCCEEEEEeCCeEEEEcCCCeEEcc
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYE   64 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~---~~~w~~~~~~g~~G~~P~~~v~~~~   64 (95)
                      ...++|+|+|.++.++||+|++||+|.|+.+   +.+||.++.+|+.|+||.+||+.+.
T Consensus         5 ~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~   63 (93)
T d1uffa_           5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMP   63 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECC
Confidence            3468999999999999999999999999976   3569999999999999999999875

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.8e-17  Score=83.94  Aligned_cols=58  Identities=24%  Similarity=0.525  Sum_probs=51.7

Q ss_pred             CCccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEcc
Q psy7083           7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE   64 (95)
Q Consensus         7 ~~~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~   64 (95)
                      .....++|+|+|.++.+++|+|++||++.|+.. +.+||.++. +|+.|+||++|++.+.
T Consensus         6 ~~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_           6 SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             SCCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CCCEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECc
Confidence            344679999999999999999999999999988 789999985 8899999999998654

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.2e-16  Score=84.44  Aligned_cols=57  Identities=26%  Similarity=0.444  Sum_probs=50.6

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec----------------cCCEEEEEe--CCeEEEEcCCCeEEccC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----------------ENDWWTGTI--GDRTGLFPSNYVVPYEA   65 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----------------~~~w~~~~~--~g~~G~~P~~~v~~~~~   65 (95)
                      +.+++|+|+|.+..+++|+|++||+|.|+..                +.|||.|++  +|+.|+||++||+.+..
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            4578999999999999999999999999863                357999986  88999999999998763

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-16  Score=82.97  Aligned_cols=58  Identities=31%  Similarity=0.580  Sum_probs=50.1

Q ss_pred             ccEEEEeccCCCCCCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCeEEccCC
Q psy7083           9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~~   66 (95)
                      ..+++|+|+|.+..+++|+|.+|++|.|+.. +++||.++. .+..|+||++|++.+...
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            4568999999999999999999999999988 889999986 445569999999877543

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.3e-15  Score=74.98  Aligned_cols=50  Identities=20%  Similarity=0.424  Sum_probs=43.8

Q ss_pred             EEEeccCCCCCCCCceecCCCEEEEEec-c-CCEEEEEe--CCeEEEEcCCCeE
Q psy7083          12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-E-NDWWTGTI--GDRTGLFPSNYVV   61 (95)
Q Consensus        12 ~~al~~~~~~~~~~l~~~~g~~i~v~~~-~-~~w~~~~~--~g~~G~~P~~~v~   61 (95)
                      ++|+|||.++.+++|+|.+||.|.++.. + ++||.+..  +|+.|+||++||+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            6899999999999999999999999987 5 45666654  7899999999986

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=9.6e-15  Score=75.42  Aligned_cols=54  Identities=30%  Similarity=0.538  Sum_probs=45.7

Q ss_pred             cEEEEeccCCC------CCCCCceecCCCEEEEEec--cCCEEEEEe--CCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDS------TEPGDLTFNQDEVIYVTKK--ENDWWTGTI--GDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~------~~~~~l~~~~g~~i~v~~~--~~~w~~~~~--~g~~G~~P~~~v~~~   63 (95)
                      ..+.++++|.+      +++++|+|++||+|.|+..  +.+||.|++  +|+.|+||++||+++
T Consensus         5 Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            35677777754      6789999999999999875  578999996  789999999999874

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6e-15  Score=80.75  Aligned_cols=58  Identities=22%  Similarity=0.539  Sum_probs=48.3

Q ss_pred             ccEEEEeccCCCCC------CCCceecCCCEEEEEec-c-CCEEEEEe-CCeEEEEcCCCeEEccCC
Q psy7083           9 QEYYIAAYPYDSTE------PGDLTFNQDEVIYVTKK-E-NDWWTGTI-GDRTGLFPSNYVVPYEAQ   66 (95)
Q Consensus         9 ~~~~~al~~~~~~~------~~~l~~~~g~~i~v~~~-~-~~w~~~~~-~g~~G~~P~~~v~~~~~~   66 (95)
                      ...|+|+|||+++.      .++|+|++||+|.|+.. + ++||.+.. +|+.||||++||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~   83 (96)
T d1wiea_          17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             ceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCc
Confidence            45799999998754      47899999999999987 5 56888875 889999999999987533

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=8.6e-15  Score=78.21  Aligned_cols=54  Identities=22%  Similarity=0.425  Sum_probs=47.4

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec------cCCEEEEEe----------CCeEEEEcCCCeEEc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK------ENDWWTGTI----------GDRTGLFPSNYVVPY   63 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~------~~~w~~~~~----------~g~~G~~P~~~v~~~   63 (95)
                      ..++|+|+|.+..+++|+|++||+|.|+..      +++||.|..          +|+.|+||++||+.+
T Consensus        13 ~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            478999999999999999999999999975      257999975          357899999999876

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.50  E-value=9.7e-15  Score=79.63  Aligned_cols=52  Identities=27%  Similarity=0.600  Sum_probs=46.4

Q ss_pred             ccEEEEeccCCCCCCCC-------ceecCCCEEEEEec-cCCEEEEEe---CCeEEEEcCCCe
Q psy7083           9 QEYYIAAYPYDSTEPGD-------LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPSNYV   60 (95)
Q Consensus         9 ~~~~~al~~~~~~~~~~-------l~~~~g~~i~v~~~-~~~w~~~~~---~g~~G~~P~~~v   60 (95)
                      ..+++|+|||++..+++       |+|.+||+|.|+.. +++||.|++   +|..|+||++++
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            34789999999998887       99999999999998 899999997   578899999764

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=2.2e-15  Score=82.58  Aligned_cols=53  Identities=30%  Similarity=0.606  Sum_probs=46.4

Q ss_pred             cEEEEeccCCCCC-----CCCceecCCCEEEEEec-cCCEEEEEe------CCeEEEEcCCCeEE
Q psy7083          10 EYYIAAYPYDSTE-----PGDLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNYVVP   62 (95)
Q Consensus        10 ~~~~al~~~~~~~-----~~~l~~~~g~~i~v~~~-~~~w~~~~~------~g~~G~~P~~~v~~   62 (95)
                      .+++|+|||.++.     ..+|+|++||+|.|+.. +.+||.++.      +|+.|+||++|+.+
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            4689999999875     35899999999999998 899999984      57899999999975

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9e-14  Score=77.25  Aligned_cols=55  Identities=29%  Similarity=0.483  Sum_probs=48.2

Q ss_pred             cEEEEeccCCCCCCCCceecCCCEEEEEec----cCCEEEEEeC--------CeEEEEcCCCeEEcc
Q psy7083          10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIG--------DRTGLFPSNYVVPYE   64 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~l~~~~g~~i~v~~~----~~~w~~~~~~--------g~~G~~P~~~v~~~~   64 (95)
                      ..++|+|+|.+..+++|+|++|++|.|+.+    +.+||.|...        ++.||||++||+.+.
T Consensus        22 ~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~   88 (106)
T d1i1ja_          22 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQ   88 (106)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEE
T ss_pred             eEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcc
Confidence            468999999999999999999999999875    3789999853        468999999999865

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=4e-13  Score=78.39  Aligned_cols=51  Identities=25%  Similarity=0.601  Sum_probs=46.2

Q ss_pred             EEEEeccCCCCCCCC-------ceecCCCEEEEEec-cCCEEEEEe---CCeEEEEcCCCeE
Q psy7083          11 YYIAAYPYDSTEPGD-------LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPSNYVV   61 (95)
Q Consensus        11 ~~~al~~~~~~~~~~-------l~~~~g~~i~v~~~-~~~w~~~~~---~g~~G~~P~~~v~   61 (95)
                      .++|+|||.+...++       |+|.+||+|.|+.. +.+||.|++   +|+.|+||++++.
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhh
Confidence            699999999998887       99999999999999 899999996   6889999987643

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.5e-11  Score=70.82  Aligned_cols=52  Identities=21%  Similarity=0.494  Sum_probs=44.9

Q ss_pred             cEEEEeccCCCCCCCC-------ceecCCCEEEEEec-cCCEEEEEe---CCeEEEEcCCCeE
Q psy7083          10 EYYIAAYPYDSTEPGD-------LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPSNYVV   61 (95)
Q Consensus        10 ~~~~al~~~~~~~~~~-------l~~~~g~~i~v~~~-~~~w~~~~~---~g~~G~~P~~~v~   61 (95)
                      ..++|+|+|++..+++       |+|.+||+|.|+.. +.+||.+++   ++..|+||+.++.
T Consensus        24 ~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~l   86 (136)
T d1vyua1          24 FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRL   86 (136)
T ss_dssp             EEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHHH
Confidence            4689999999887766       89999999999998 899999996   5678999998743

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00057  Score=34.70  Aligned_cols=39  Identities=15%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             CCCCceecCCCEEEEEec-cCCEEEEEe-CCeEEEEcCCCe
Q psy7083          22 EPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYV   60 (95)
Q Consensus        22 ~~~~l~~~~g~~i~v~~~-~~~w~~~~~-~g~~G~~P~~~v   60 (95)
                      ...+|.++.|+.+.|++. +.+-|.+++ .|.-|+++..++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            456899999999999998 788899997 999999988765