Psyllid ID: psy7093
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | 2.2.26 [Sep-21-2011] | |||||||
| Q921L7 | 340 | HemK methyltransferase fa | yes | N/A | 0.891 | 0.844 | 0.382 | 2e-51 | |
| Q9Y5R4 | 338 | HemK methyltransferase fa | yes | N/A | 0.916 | 0.872 | 0.362 | 3e-49 | |
| B5YIQ8 | 279 | Release factor glutamine | yes | N/A | 0.785 | 0.906 | 0.307 | 2e-32 | |
| Q7NJS7 | 286 | Release factor glutamine | yes | N/A | 0.791 | 0.891 | 0.278 | 2e-30 | |
| Q9A9T7 | 289 | Release factor glutamine | yes | N/A | 0.844 | 0.941 | 0.297 | 2e-29 | |
| Q748B2 | 284 | Release factor glutamine | yes | N/A | 0.618 | 0.700 | 0.327 | 5e-28 | |
| P74003 | 299 | Release factor glutamine | N/A | N/A | 0.652 | 0.702 | 0.310 | 3e-27 | |
| Q8DHV7 | 291 | Release factor glutamine | yes | N/A | 0.689 | 0.762 | 0.299 | 1e-26 | |
| Q98G94 | 290 | Release factor glutamine | yes | N/A | 0.829 | 0.920 | 0.257 | 2e-26 | |
| Q9ZCB3 | 518 | Bifunctional methyltransf | yes | N/A | 0.863 | 0.536 | 0.284 | 8e-26 |
| >sp|Q921L7|HEMK1_MOUSE HemK methyltransferase family member 1 OS=Mus musculus GN=Hemk1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 171/298 (57%), Gaps = 11/298 (3%)
Query: 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCE 87
++ WT FE+ IPE S + I+AH+ + LT Q+ + +LC
Sbjct: 44 GMVNHWTRVFEERGIPEARESSEYIVAHVLGAKTFQSLKPALWTKPLTPQQLECIQELCG 103
Query: 88 CRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR----- 142
RL RMPVQYI+ EW+F+ L+LKM PPVFIPR ETEEL++ + +++ H
Sbjct: 104 RRLQRMPVQYILGEWDFQGLSLKMVPPVFIPRPETEELVEWVLEEVAQRPHAVRAQDGPL 163
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
++E+G G+GAIT+SLL PK + +A+D+ + A LT +NA + +++++ H +I S+
Sbjct: 164 ILEVGCGSGAITLSLLSQLPKSRVVAVDKEEAAVSLTHENAQRLQLQDRIRIIHLDITSE 223
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262
G +L P DLVVSNPPY+ D+ +L PEI YED+ ALDGG +G++II I
Sbjct: 224 GCCTHLLP---WSPLDLVVSNPPYIFRKDMEQLAPEICSYEDLVALDGGDEGMDIITHIL 280
Query: 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH-HMKLKLVENYKDFNNKDRFVELK 319
L +GSIFLE + H + + WL H + L LV +DF + RF+ ++
Sbjct: 281 TLAPQLLNASGSIFLEVDPRHPELVSSWLQ--SHPDLHLSLVGVREDFCGRPRFLHVQ 336
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N5-glutamine methyltransferase responsible for the methylation of the GGQ triplet of the mitochondrial translation release factor MTRF1L. Mus musculus (taxid: 10090) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9Y5R4|HEMK1_HUMAN HemK methyltransferase family member 1 OS=Homo sapiens GN=HEMK1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 176/306 (57%), Gaps = 11/306 (3%)
Query: 19 LATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQ 78
LA ++ ++ ++ WT FE+ IPE S + I+AH+ + LT+ Q
Sbjct: 35 LAGLSSAIE-LVSHWTGVFEKRGIPEARESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQ 93
Query: 79 ITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNH 138
+ + +L RL RMPVQYI+ EW+F+ L+L+M PPVFIPR ETEEL++ + +++ +H
Sbjct: 94 LQCIRELSSRRLQRMPVQYILGEWDFQGLSLRMVPPVFIPRPETEELVEWVLEEVAQRSH 153
Query: 139 ---TPTR--MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
+P ++E+G G+GAI++SLL P+ + IA+D+ + A LT +NA + +++
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIW 213
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
+ H ++ S+ +L DL+VSNPPYV D+ +L PEI YED ALDGG +
Sbjct: 214 IIHLDMTSERSWTHLP----WGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEE 269
Query: 254 GLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKD 313
G++II I LK +GSIFLE + H + + WL + L LV +DF +
Sbjct: 270 GMDIITHILALAPRLLKDSGSIFLEVDPRHPELVSSWLQ-SRPDLYLNLVAVRRDFCGRP 328
Query: 314 RFVELK 319
RF+ ++
Sbjct: 329 RFLHIR 334
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N5-glutamine methyltransferase responsible for the methylation of the GGQ triplet of the mitochondrial translation release factor MTRF1L. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B5YIQ8|PRMC_THEYD Release factor glutamine methyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 147/270 (54%), Gaps = 17/270 (6%)
Query: 50 QNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTL 109
Q I+ H+ KID + + +N E+T++Q + L E RL + P+QYII E F ++ +
Sbjct: 22 QEIICHVL---KIDKIQLYTENPEITSEQAHTIKSLIERRLKKEPLQYIIGECYFYNIKI 78
Query: 110 KMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAI 169
K+ V IPR ETE L++ + ++ + ++T R++++ +G+G I +++ K+ P+ + I
Sbjct: 79 KVGRGVLIPRPETEILVEQVLERQKLISNTGNRILDLCTGSGCIALAIGKNAPEFQIFGI 138
Query: 170 DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPS 229
D+S+ A +N ++N+ N + + V ++ E+ F + +NPPYV +
Sbjct: 139 DKSEKAVKYATENKALNNIKNVIFL----------VGDMFNPFKEKIFACITANPPYVKT 188
Query: 230 LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKE 289
+I KL+PEI YE ++AL+GG DGLN + I YL +G IFLE ++
Sbjct: 189 DEISKLQPEIKNYEPLEALNGGEDGLNFYRKIIENAEKYLLNSGLIFLEIGQGQAKAVQN 248
Query: 290 WLGICGHHMKLKLVENYKDFNNKDRFVELK 319
+ G + ++E KD DR + L+
Sbjct: 249 IALMSGFN----VIEVVKDIAGIDRVMILQ 274
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) (taxid: 289376) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q7NJS7|PRMC_GLOVI Release factor glutamine methyltransferase OS=Gloeobacter violaceus (strain PCC 7421) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 29/284 (10%)
Query: 46 ENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQI---------THLNKLCECRLAR---- 92
E ++ H + +ID ++E T L ++ H KL R
Sbjct: 10 EQALAEARVHDIDAAEID--YLIEAVTGLDRLRVRLGGPQALEAHREKLAALWRRRIEEA 67
Query: 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGA 152
MP+QY++ ++RDL L++ P V IPR E+E L+D+ D S R++++G+G+GA
Sbjct: 68 MPLQYLLGTAHWRDLQLQVNPAVLIPRPESEALVDVAVDFCRSCAGA--RVVDLGTGSGA 125
Query: 153 ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL 212
I +++ + P A+D S+ A + N + ++ Q+ + N L
Sbjct: 126 IAVAVARALPGATVWAVDASEAALVVAGANIERYGLSEQVHLLRG---------NWFVPL 176
Query: 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN 272
Q FD V+SNPPY+PS +I L PE+ L+E + ALDGG DGL+ ++ I + +L+P
Sbjct: 177 PTQPFDAVLSNPPYIPSAEIAALMPEVRLHEPLSALDGGSDGLDAVRQIIADAARHLRPG 236
Query: 273 GSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
G + LE + + + + + +D+ +R V
Sbjct: 237 GILALEVMAGQGPTVVQ---LLARDSRYGCIRTVRDWAGIERIV 277
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Gloeobacter violaceus (strain PCC 7421) (taxid: 251221) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q9A9T7|PRMC_CAUCR Release factor glutamine methyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=prmC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 135/292 (46%), Gaps = 20/292 (6%)
Query: 28 NVLKEWTA---KFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNK 84
++K WTA + + A I +P + ++ T+ + VT + EL+ +QI LN
Sbjct: 4 TLVKAWTAAKDRLKDAGIDQPSIDARLMLEVAAGVTRTEIVT--DPYRELSAEQIATLND 61
Query: 85 LCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMI 144
E R R PV +II F + L++ V PR ETE ++D + H M+
Sbjct: 62 YLERRARREPVSHIIGRKGFWKILLQVNKNVLTPRPETEVIVDEVLKAF--PEHMAFSML 119
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204
++G G+G I +++L P K + ID S A + +NA ++ + + H + +
Sbjct: 120 DLGVGSGTILLAVLAERPAAKGLGIDASSEALAVARENAANLDLNTRAALLHGDWTTG-- 177
Query: 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264
L FDLVVSNPPY+P+ I LEPE+ ++E ALDGG DGL + +
Sbjct: 178 -------LGSDSFDLVVSNPPYIPTEVIDTLEPEVRIHEPRLALDGGPDGLAAYRELAPE 230
Query: 265 GSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
LKP G +E +D ++ G V KD + DR V
Sbjct: 231 ILRVLKPGGLFAVEIGYDQSQAVEALFRAAGATE----VRTVKDLSTHDRVV 278
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKL 133
L +++ L R R P+QYI+ F L +TP V IPR +TE I+ + L
Sbjct: 56 LNPEELAACRGLVARRAKREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEV---IVEEAL 112
Query: 134 ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
+ H +++IG G+G I ++L K P + + ++QS A L ++NA H ++
Sbjct: 113 RRAPHAAA-VLDIGVGSGCIAVALAKQLPHAQVVGVEQSPGAIALAQRNAERHGA--RVT 169
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
+F + +P L +Q+FDL+VSNPPY+P+ D+ L+PE+ YE ALDGG D
Sbjct: 170 LFEGSL--------FEP-LGDQRFDLIVSNPPYIPTADLEALQPEVREYEPRAALDGGSD 220
Query: 254 GLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI 287
GL+ + I YL P G + +E + +
Sbjct: 221 GLDFYRLIVPAAPEYLNPGGWLMVELGIGQAETV 254
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|P74003|PRMC_SYNY3 Release factor glutamine methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 28/238 (11%)
Query: 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPT----RMIEIG 147
+ PVQY++ + +RD +K+T V IPR ETE +IDI+ + E S +P+ +++G
Sbjct: 77 KYPVQYLLGQTQWRDFVIKVTDDVLIPRPETELIIDIV--QHEHSALSPSNCADHWVDLG 134
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI------DS 201
+G+GAI + L FP+ A+D S A + +NA ++ +++Q FH
Sbjct: 135 TGSGAIALGLAATFPQALVHAVDCSGSALAIARENAQLNQFGDRIQ-FHQGYWWEPLEHL 193
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
KGQV+ + VSNPPY+P ++ +L+PE+ +E + ALDGG DGL ++ +
Sbjct: 194 KGQVQGM------------VSNPPYIPQRELAQLQPEVIKHEPLLALDGGPDGLQAVEQL 241
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
YLKP G +E + E L G + +++ ++D + +RFV +
Sbjct: 242 IRRSPTYLKPGGFWLVEIMTGQAPMVAELLRASGAYQDIQI---HRDLASIERFVSAR 296
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 22/244 (9%)
Query: 79 ITHLNKLCECRLA-RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSN 137
+T L + + R R+P+QY+I ++ DL L +TP V IPR ETEEL+ ++ +
Sbjct: 59 LTELQERWQRRWQERVPLQYLIGVAHWHDLELVVTPSVLIPRPETEELLAVVAATVPPWQ 118
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV--- 194
+++G+G+GAI I L + FP A+D S A ++ + N + + ++++
Sbjct: 119 QQ-GHWLDLGTGSGAIAIGLARLFPAALIHAVDCSSEALEVAQVNIQKYALGDRVRCYVG 177
Query: 195 --FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252
F + +GQV+ +VSNPPY+P+ + L+PE+ +E + ALDGG
Sbjct: 178 NWFDPIVPLQGQVQG------------IVSNPPYIPTSVVATLQPEVQYHEPLLALDGGT 225
Query: 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312
DGL I+ I YL+P G +F+E + + + VE +D +
Sbjct: 226 DGLQAIRQILETAPEYLQPQGWLFIELMATQGKAVA---ALAMATQAYERVEILRDLSGH 282
Query: 313 DRFV 316
DRF+
Sbjct: 283 DRFL 286
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q98G94|PRMC_RHILO Release factor glutamine methyltransferase OS=Rhizobium loti (strain MAFF303099) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 24/291 (8%)
Query: 29 VLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCEC 88
+L+E A+ A + +P + I+ H TT+ + E+ + ++ I ++
Sbjct: 12 LLREARARLVAAGVGDPALDARLIVEHFSGTTRTQAIADPERTID--SNAIAAIDAALGR 69
Query: 89 RLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITD--KLESSNHTPTRMIEI 146
R PV I+ F L L ++P PR +TE L++ + K ++ R++++
Sbjct: 70 RAGGEPVHRILGYREFYGLRLSLSPETLEPRPDTETLVEAVLPFVKAMAAREGTCRILDL 129
Query: 147 GSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206
G+GTGAI ++LL P A +D S A +NA E+ G+
Sbjct: 130 GTGTGAIALALLSAVPAATATGVDISAGALATAARNA-------------GELGLGGRFT 176
Query: 207 NLQPDLLEQ---KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263
+Q D E+ ++ ++ +NPPY+P+ DI L+ E+ ++ ALDGG DGLN + I
Sbjct: 177 TVQSDWFEKVSGRYHVIAANPPYIPTRDIGNLQDEVRDFDPRLALDGGVDGLNPYRIIAA 236
Query: 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
+ +L+ I +E H D++ + G+ V +D DR
Sbjct: 237 EAARFLEAESRIAVEIGHTQRDEVTDIFKAAGYAS----VAALRDLGGNDR 283
|
Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Rhizobium loti (strain MAFF303099) (taxid: 266835) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q9ZCB3|RFTRM_RICPR Bifunctional methyltransferase OS=Rickettsia prowazekii (strain Madrid E) GN=prmC/trmB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 31/309 (10%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +L K + I P + ++ H+ T K + +++ N +L+ +I KL
Sbjct: 5 IKQILSNANDKLNKIGINLPGLEARILLQHV--TNKPIEHLLIKLNEQLSEAEIEAFEKL 62
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSN--HTPTRM 143
E RLA P+ YII F + V IPR +TE L+D++ + S N H +++
Sbjct: 63 LERRLAHEPIAYIIGVKEFYSREFIVNKHVLIPRIDTEVLVDVVIGLVVSRNNLHMFSKL 122
Query: 144 --------------IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA 189
+E+G+G+G I ISLL P IA D S A + + N++ +NV
Sbjct: 123 KSLDSVLTTQSYNILELGTGSGCIAISLLCELPNTNIIATDISVDAIKVAKSNSIKYNVT 182
Query: 190 NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALD 249
+++Q+ H+ N L +QKFD +VSNPPY+ + K+ E YE AL
Sbjct: 183 DRIQIIHS---------NWFEKLDKQKFDFIVSNPPYISHTEKLKMAIETINYEPSIALF 233
Query: 250 GGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDF 309
DGL I +LKPNG I LE K+ + G+++ Y+D
Sbjct: 234 AEEDGLEAYSIIAKNAKQFLKPNGKIILEIGFSQAAKVSKIFLNYGYNIDYI----YRDL 289
Query: 310 NNKDRFVEL 318
+ +R +E+
Sbjct: 290 QSHNRVIEI 298
|
Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Rickettsia prowazekii (strain Madrid E) (taxid: 272947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | ||||||
| 312383011 | 348 | hypothetical protein AND_04041 [Anophele | 0.909 | 0.841 | 0.471 | 2e-76 | |
| 157105369 | 328 | protein-(glutamine-N5) methyl transferas | 0.888 | 0.871 | 0.460 | 7e-73 | |
| 170062547 | 328 | HemK methyltransferase family member 1 [ | 0.894 | 0.878 | 0.452 | 5e-71 | |
| 307213045 | 366 | HemK methyltransferase family member 1 [ | 0.934 | 0.822 | 0.451 | 1e-69 | |
| 322792390 | 350 | hypothetical protein SINV_10611 [Solenop | 0.903 | 0.831 | 0.443 | 1e-68 | |
| 307189800 | 353 | HemK methyltransferase family member 1 [ | 0.934 | 0.852 | 0.448 | 1e-67 | |
| 383863352 | 352 | PREDICTED: hemK methyltransferase family | 0.962 | 0.880 | 0.418 | 2e-67 | |
| 350420830 | 350 | PREDICTED: hemK methyltransferase family | 0.950 | 0.874 | 0.416 | 5e-66 | |
| 332025875 | 353 | HemK methyltransferase family member 1 [ | 0.928 | 0.847 | 0.440 | 7e-65 | |
| 340724084 | 350 | PREDICTED: hemK methyltransferase family | 0.937 | 0.862 | 0.404 | 4e-64 |
| >gi|312383011|gb|EFR28253.1| hypothetical protein AND_04041 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/301 (47%), Positives = 203/301 (67%), Gaps = 8/301 (2%)
Query: 18 ALATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTND 77
A T V ++W +F+ IPEPE SI NI+AH+ + DV +N+ L+
Sbjct: 52 AQPTNTTTVRGAQEKWLQRFQSENIPEPETSISNIIAHVLELSGPGDVG-DHQNSSLSEQ 110
Query: 78 QITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSN 137
QI + ++CECRLARMP+QYII+EW+FRDLTLKM PPVFIPR ETEEL+++I +++S
Sbjct: 111 QIRKIEEMCECRLARMPLQYIIREWDFRDLTLKMIPPVFIPRPETEELVELILQQMDSQK 170
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197
T +EIGSG+GAI++S+LKH PK IAIDQS+ AC+LT +NA + ++L++F
Sbjct: 171 ET--FFLEIGSGSGAISLSILKHVPKSSGIAIDQSRLACELTRENAAAVGLDSRLRIFKH 228
Query: 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257
++ + +L L ++FD++VSNPPYVPS+ +P LEPEI +YED++ALDGG+DGL +
Sbjct: 229 KL-----INDLPDTLAGEQFDMIVSNPPYVPSVLLPTLEPEIKIYEDLRALDGGNDGLTV 283
Query: 258 IKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVE 317
IK I S +L +G ++LE + H I+++L G M L+ V +YKD KDRFVE
Sbjct: 284 IKAILRIASKHLTKDGVLWLEVDISHPPVIEKFLAQHGDKMGLRFVASYKDLFQKDRFVE 343
Query: 318 L 318
+
Sbjct: 344 I 344
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157105369|ref|XP_001648837.1| protein-(glutamine-N5) methyl transferase, putative [Aedes aegypti] gi|108880106|gb|EAT44331.1| AAEL004282-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 196/293 (66%), Gaps = 7/293 (2%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
V V +W ++F+ IPE + SI NI+AH+ + DV + T+L+ DQ+ +++L
Sbjct: 40 VRTVKDKWISRFQTENIPEADASITNILAHVLKVQCLSDVNERHQETKLSEDQLAKIDEL 99
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
CECRLARMP+QYII EW FRDLTLKM PPVFIPR ETEELI++I ++++ + +E
Sbjct: 100 CECRLARMPIQYIIHEWEFRDLTLKMVPPVFIPRPETEELIELILQQIDAQKE--MKFLE 157
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
IG GTGAI++S+LKH P+ A+A+DQS AC+LT +NA H + + L++F ++ V
Sbjct: 158 IGCGTGAISLSILKHAPQASAVALDQSTLACELTMENAKNHGLVDNLRIFRHKL-----V 212
Query: 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG 265
L +L KFD++VSNPPYVPS + LEPEI +YED++ALDGG DGL ++K I
Sbjct: 213 DKLPTELESHKFDMIVSNPPYVPSRQLLALEPEIKVYEDLRALDGGPDGLTVVKAILDIA 272
Query: 266 SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318
+L+P+G ++LE + H I+++L + LK + +YKD K+RFVE+
Sbjct: 273 GKHLEPSGVLWLEVDSSHPPLIEKYLEEAVPELGLKFMSSYKDMFRKERFVEI 325
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170062547|ref|XP_001866716.1| HemK methyltransferase family member 1 [Culex quinquefasciatus] gi|167880450|gb|EDS43833.1| HemK methyltransferase family member 1 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/296 (45%), Positives = 197/296 (66%), Gaps = 8/296 (2%)
Query: 23 ANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHL 82
A V V ++WT++F+ +PE SI NI+AH+ + DV K+ L++ Q+ +
Sbjct: 38 AVSVKTVQEKWTSRFQTENVPEATTSIANILAHVLQLPCLGDVD-KNKDAVLSDAQLAKI 96
Query: 83 NKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR 142
+LCECR+ARMPVQYII+EW+FRD+TLKM PPVFIPR ETEEL+++I ++++
Sbjct: 97 EELCECRIARMPVQYIIREWDFRDMTLKMVPPVFIPRPETEELVELILQQIDTQKEF--S 154
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
+EIG G+GAIT+SLLK PK AIA+DQSK AC+LT +NA ++ + +L++F ++
Sbjct: 155 FLEIGCGSGAITLSLLKQVPKATAIALDQSKLACELTLENAKRYDFSEKLRIFKHKL--- 211
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262
V L +L +FD++VSNPPYVPS + +L+PE+ +YED++ALDGG DGL +IK I
Sbjct: 212 --VDKLPDELAGHRFDMIVSNPPYVPSGQLQRLDPEVKVYEDLRALDGGPDGLTVIKAIL 269
Query: 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318
S++L G ++LE + H I +L G + L+ V +YKD K+RFVE+
Sbjct: 270 TIASDHLADEGILWLEVDTSHPPLIAGYLEEHGERLGLRYVSSYKDLFRKERFVEI 325
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307213045|gb|EFN88576.1| HemK methyltransferase family member 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/312 (45%), Positives = 200/312 (64%), Gaps = 11/312 (3%)
Query: 16 KRALATKA--NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTE 73
+R++A+ A + + +++ +W+ +FE IPEP SI++I+AHI T K DV + +N +
Sbjct: 53 QRSIASNACGSTIGDIIDQWSRRFEAEGIPEPVESIEHIVAHIVGTRKTLDVFNM-RNDK 111
Query: 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKL 133
QI L LCECRL+RMPVQYII EW+FRD+T+K+ PPVFIPR ETE L+D + +L
Sbjct: 112 FNASQIEELESLCECRLSRMPVQYIIGEWDFRDITVKLVPPVFIPRPETEILVDFVLKRL 171
Query: 134 ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
SS ++EIG G+GAI+++L K+K AID S HACDLT N N+ +Q+
Sbjct: 172 NSSPLENCEILEIGCGSGAISLALAHACKKIKCTAIDASPHACDLTMTNRSQLNLMDQIA 231
Query: 194 VFHAEI--DSKGQVKNL-----QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIK 246
V HA + D+ +V ++ + DL ++FD VVSNPPYVP+ I LEPEI +YED++
Sbjct: 232 VIHATLKPDATVEVTSMSNGAGKMDLNSKQFDFVVSNPPYVPTKKILDLEPEIKIYEDLR 291
Query: 247 ALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENY 306
ALDGG DGL +IKP+ + + LKP G + +E + H + IK + +KL Y
Sbjct: 292 ALDGGDDGLKVIKPLLRYSAKALKPGGRLLVEVDSTHPEYIKFFTNKYS-DLKLHYEHTY 350
Query: 307 KDFNNKDRFVEL 318
KDF N DRFVE+
Sbjct: 351 KDFCNNDRFVEV 362
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322792390|gb|EFZ16374.1| hypothetical protein SINV_10611 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/300 (44%), Positives = 192/300 (64%), Gaps = 9/300 (3%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +V+++W+ +F+ IPEP SI++I+AH+ T KI D+ V +N L QI + L
Sbjct: 49 IGDVIEQWSRRFKNEGIPEPIKSIEHIVAHVIGTKKIIDILNV-RNDPLNASQIEKVESL 107
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
CECRL+RMPVQYII EW+FRD+T+K+ PP+FIPR ETE L+D + +L +S ++E
Sbjct: 108 CECRLSRMPVQYIIGEWDFRDITVKLVPPIFIPRPETEILVDFVLKRLSTSQADSCEILE 167
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
IG G+GAI+++L +K AID S HACDLT N N+ Q+ V HA ++S +
Sbjct: 168 IGCGSGAISLALAHACKTIKCTAIDASPHACDLTMINRKKLNLTEQITVIHATLNSDASI 227
Query: 206 KNLQP-------DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
+ L DL + FD V+SNPPYVP+ IP+L+PEI +YED++ALDGG DGL +I
Sbjct: 228 EILNNLNGADNLDLNSRLFDFVISNPPYVPTKTIPELQPEIRIYEDLRALDGGDDGLKVI 287
Query: 259 KPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318
KP+ + + LKP G +F+E + H + ++ + +KL YKDF N DRFVE+
Sbjct: 288 KPLLRYAAKALKPGGRLFIEVDPSHPEYVQFFTNKYS-DLKLHHEHTYKDFCNNDRFVEV 346
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307189800|gb|EFN74072.1| HemK methyltransferase family member 1 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 196/312 (62%), Gaps = 11/312 (3%)
Query: 16 KRALATKA--NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTE 73
+R+ ++ A V +++ +W+ +FE I EP SI++I+AH+ T KI D+ V +N
Sbjct: 40 RRSFSSNACDYTVGDIIDQWSRRFENEGITEPVESIEHIVAHVIGTKKIIDILNV-RNNR 98
Query: 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKL 133
L +QI L +CECRL+RMPVQYII EW+FRD+T+K+ PP+FIPR ETE L+D + +L
Sbjct: 99 LNANQIEKLESMCECRLSRMPVQYIIGEWDFRDITVKLVPPIFIPRPETEILVDFVLKRL 158
Query: 134 ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
S ++EIG G+GAI+++L K+K AID S +ACDLT N N+AN++
Sbjct: 159 NSLQLDSCEILEIGCGSGAISLALAHACEKIKCTAIDTSPYACDLTIINRDKLNLANRVT 218
Query: 194 VFHAEIDSKGQVKNLQP-------DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIK 246
V HA + S V+ + DL + FD VVSNPPYVP+ I KL+PEI +YED++
Sbjct: 219 VIHATLKSDATVEVFKELNGASDMDLNLRLFDFVVSNPPYVPTKHISKLQPEIRIYEDLR 278
Query: 247 ALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENY 306
ALDGG DGL IIKP+ + + LKP G +FLE + H + I ++ KL Y
Sbjct: 279 ALDGGDDGLKIIKPLLKYTAKVLKPGGRLFLEVDPTHPEYI-QFFTNKYPDFKLHHEHTY 337
Query: 307 KDFNNKDRFVEL 318
KDF N DRFVE+
Sbjct: 338 KDFCNNDRFVEV 349
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383863352|ref|XP_003707145.1| PREDICTED: hemK methyltransferase family member 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 199/325 (61%), Gaps = 15/325 (4%)
Query: 5 KNCVVLVLSLQKRALATKAN--VVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKI 62
+N V+ L +R AT + ++++W+ +F+ +PEP SI++I+AH+ T+KI
Sbjct: 28 RNKVLTSTRLTQRLFATSVQCPTIGEIIEQWSDRFKNEGVPEPVESIEHIVAHVIGTSKI 87
Query: 63 DDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSET 122
D+ + +N LT+DQ L LCECRL+RMPVQYII EW+FRD+ LK+ PPVFIPR ET
Sbjct: 88 LDL-VNARNERLTSDQHDTLESLCECRLSRMPVQYIIGEWDFRDINLKLMPPVFIPRPET 146
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
E L+ + L SS + ++E+G G+GAI++++ + IAID S AC+LT++N
Sbjct: 147 EMLVHYVLKGLSSSQNKSHEILEVGCGSGAISLAIAHSNKTVNCIAIDSSPDACELTKEN 206
Query: 183 AVMHNVANQLQVFHAEIDSKGQV---------KNLQPDLLEQKFDLVVSNPPYVPSLDIP 233
+ NQ+ + HA + G + K+L DL + FD +VSNPPYVP+ IP
Sbjct: 207 RDRLGLENQVAIMHATLKEDGTIDLTNVISGPKDL--DLSSKTFDFIVSNPPYVPTKQIP 264
Query: 234 KLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGI 293
L PEI +YED+ ALDGG DGL I+KP+ + + LKP G + LE + H + I ++
Sbjct: 265 TLAPEIKIYEDLTALDGGDDGLKIVKPLLKYAATALKPGGRLLLEVDTTHPEYI-QFFTK 323
Query: 294 CGHHMKLKLVENYKDFNNKDRFVEL 318
+KL+ YKDF N DRFVE+
Sbjct: 324 KYPVLKLQYEHTYKDFCNNDRFVEI 348
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350420830|ref|XP_003492640.1| PREDICTED: hemK methyltransferase family member 1-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 199/322 (61%), Gaps = 16/322 (4%)
Query: 9 VLVLSLQKRALAT---KANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDV 65
++ S R+L T + V ++++W+ +F+ IPEP SI++I+AH+ T KI DV
Sbjct: 29 IITFSRPTRSLCTTNVQCPTVGEIIEQWSDRFKNEGIPEPVESIEHIVAHVIGTRKILDV 88
Query: 66 TIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEEL 125
+ ++ LT+DQ L+ LCECRL+RMPVQYII EW+F+D+TLK+ PPVFIPR ETE L
Sbjct: 89 -VNARSKRLTSDQRDTLDLLCECRLSRMPVQYIIGEWDFQDITLKLVPPVFIPRPETEML 147
Query: 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185
+ L SS + ++E+G G+GAI++++ + IAID + AC+LT++N
Sbjct: 148 VHYALKALRSSENKKQEILEVGCGSGAISLAIAHADKTVNCIAIDSNPDACELTKENRDR 207
Query: 186 HNVANQLQVFHAEIDSKGQV---------KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE 236
N+ +++ V HA + G + K+L D + FD++VSNPPYVP+ IP L
Sbjct: 208 LNLKDRVAVVHAALKDDGSIEISNALSETKDL--DFNSKIFDVIVSNPPYVPTKQIPTLT 265
Query: 237 PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296
PEI +YED+ ALDGG DGL +IKP+ + + LKP G + LE + H + I+ +
Sbjct: 266 PEIKIYEDLTALDGGDDGLKVIKPLLKYAATALKPGGRLLLEVDTSHPEYIR-FFTKKYS 324
Query: 297 HMKLKLVENYKDFNNKDRFVEL 318
+KL+ YKDF N DRFVE+
Sbjct: 325 VLKLQYAHTYKDFCNNDRFVEI 346
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332025875|gb|EGI66031.1| HemK methyltransferase family member 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 136/309 (44%), Positives = 192/309 (62%), Gaps = 10/309 (3%)
Query: 21 TKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQIT 80
T+ + NVL +W+ +FE + EP SI++I+AHI KI D+ V +N L QI
Sbjct: 46 TRECTIGNVLDQWSHRFENEGVSEPVESIEHIVAHIIGIKKIIDICNV-RNDTLNASQIE 104
Query: 81 HLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTP 140
L LCECRL+RMPVQYII EW+FRD+T+K+ PP+FIPR ETE L+D + +L SS
Sbjct: 105 KLESLCECRLSRMPVQYIIGEWDFRDITVKLVPPIFIPRPETEILVDFVLKRLNSSQADS 164
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++EIG G+GAI+++L K+K AID++ HACDLT N +++ Q+ V HA +
Sbjct: 165 CEILEIGCGSGAISLALAHACKKIKCTAIDENLHACDLTMINRSKLDLSEQVIVIHATLK 224
Query: 201 SKGQVKNL--------QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252
S ++ L L + FD V+SNPPYVP+ I +L+PEI +YED++ALDGG
Sbjct: 225 SDASIETLSNLYDAGDSKSLNSKLFDYVISNPPYVPTKKISELQPEIRIYEDLRALDGGD 284
Query: 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312
DGL +IKP+ + + LKP G +F+E + H + I+ + +KL YKDF N
Sbjct: 285 DGLKVIKPLLKYAAKGLKPGGRLFIEVDPTHPEYIQFFTNK-YPELKLHYKHTYKDFCNN 343
Query: 313 DRFVELKLV 321
DRFVE+ V
Sbjct: 344 DRFVEVSKV 352
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340724084|ref|XP_003400415.1| PREDICTED: hemK methyltransferase family member 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 200/326 (61%), Gaps = 24/326 (7%)
Query: 9 VLVLSLQKRALAT---KANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDV 65
++ S R+L T + V ++++W+ +F+ IPEP SI++I+AH+ +K DV
Sbjct: 29 IITFSRLTRSLCTTNVQCPTVGEIIEQWSDRFKNEGIPEPIESIEHIVAHVIGISKTLDV 88
Query: 66 TIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEEL 125
+ ++ LT+DQ L+ LCECRL+RMPVQYII EW+F+D+TLK+ PPVFIPR E+E L
Sbjct: 89 -VNARSKRLTSDQRDTLDSLCECRLSRMPVQYIIGEWDFQDITLKLVPPVFIPRPESEML 147
Query: 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185
+ L SS + ++E+G G+GAI++++ + IAID + AC+LT++N
Sbjct: 148 VHYALKALNSSENKKQEILEVGCGSGAISLAIAHTNKTVNCIAIDSNPDACELTKENRDR 207
Query: 186 HNVANQLQVFHAEIDSKGQV---------KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE 236
N+ +++ V HA + G + K+L D + FD++VSNPPY+P+ IP L
Sbjct: 208 LNLKDRVAVVHATLKDDGSIEISNALSETKDL--DFNSKIFDVIVSNPPYIPTKQIPTLI 265
Query: 237 PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI----KEWLG 292
PEI +YED+ ALDGG DGL +IKP+ + + LKP G + LE + H + I K++
Sbjct: 266 PEIKIYEDLTALDGGDDGLKVIKPLLKYAATALKPGGRLLLEVDTSHPEYILFFTKKY-- 323
Query: 293 ICGHHMKLKLVENYKDFNNKDRFVEL 318
+KL+ V YKDF N DRFVE+
Sbjct: 324 ---SVLKLQYVRTYKDFCNNDRFVEI 346
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | ||||||
| MGI|MGI:1916786 | 340 | Hemk1 "HemK methyltransferase | 0.888 | 0.841 | 0.383 | 5.1e-51 | |
| RGD|1308293 | 340 | Hemk1 "HemK methyltransferase | 0.888 | 0.841 | 0.380 | 8.5e-49 | |
| UNIPROTKB|Q9Y5R4 | 338 | HEMK1 "HemK methyltransferase | 0.916 | 0.872 | 0.366 | 6e-48 | |
| FB|FBgn0031817 | 328 | CG9531 [Drosophila melanogaste | 0.875 | 0.859 | 0.343 | 1.1e-46 | |
| UNIPROTKB|E2RK46 | 358 | HEMK1 "Uncharacterized protein | 0.891 | 0.801 | 0.375 | 1.4e-46 | |
| ZFIN|ZDB-GENE-050208-185 | 342 | hemk1 "HemK methyltransferase | 0.906 | 0.853 | 0.375 | 3.8e-46 | |
| UNIPROTKB|E1BTM2 | 348 | HEMK1 "Uncharacterized protein | 0.891 | 0.824 | 0.369 | 7.9e-46 | |
| UNIPROTKB|F1MC55 | 321 | HEMK1 "Uncharacterized protein | 0.869 | 0.872 | 0.370 | 1e-43 | |
| UNIPROTKB|I3LL60 | 342 | HEMK1 "Uncharacterized protein | 0.900 | 0.847 | 0.360 | 5.7e-43 | |
| UNIPROTKB|E1C5S6 | 306 | HEMK1 "Uncharacterized protein | 0.767 | 0.807 | 0.379 | 1.7e-41 |
| MGI|MGI:1916786 Hemk1 "HemK methyltransferase family member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 114/297 (38%), Positives = 171/297 (57%)
Query: 29 VLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCEC 88
++ WT FE+ IPE S + I+AH+ + LT Q+ + +LC
Sbjct: 45 MVNHWTRVFEERGIPEARESSEYIVAHVLGAKTFQSLKPALWTKPLTPQQLECIQELCGR 104
Query: 89 RLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR-----M 143
RL RMPVQYI+ EW+F+ L+LKM PPVFIPR ETEEL++ + +++ H +
Sbjct: 105 RLQRMPVQYILGEWDFQGLSLKMVPPVFIPRPETEELVEWVLEEVAQRPHAVRAQDGPLI 164
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
+E+G G+GAIT+SLL PK + +A+D+ + A LT +NA + +++++ H +I S+G
Sbjct: 165 LEVGCGSGAITLSLLSQLPKSRVVAVDKEEAAVSLTHENAQRLQLQDRIRIIHLDITSEG 224
Query: 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263
+L P DLVVSNPPY+ D+ +L PEI YED+ ALDGG +G++II I
Sbjct: 225 CCTHLLP---WSPLDLVVSNPPYIFRKDMEQLAPEICSYEDLVALDGGDEGMDIITHILT 281
Query: 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH-HMKLKLVENYKDFNNKDRFVELK 319
L +GSIFLE + H + + WL H + L LV +DF + RF+ ++
Sbjct: 282 LAPQLLNASGSIFLEVDPRHPELVSSWLQ--SHPDLHLSLVGVREDFCGRPRFLHVQ 336
|
|
| RGD|1308293 Hemk1 "HemK methyltransferase family member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 113/297 (38%), Positives = 169/297 (56%)
Query: 29 VLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCEC 88
++ WT FE+ IPE S + I+AH+ + LT Q+ + +LC
Sbjct: 45 IVNHWTRVFEERGIPEARESSEYIVAHVLGAKTFQSLRPALWTKPLTPQQLECIQELCNH 104
Query: 89 RLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLES------SNHTPTR 142
RL RMPVQYI+ EW+F+ L LKM PPVFIPR ETEEL++ + +++ + P
Sbjct: 105 RLQRMPVQYILGEWDFQGLNLKMAPPVFIPRPETEELVEWVLEEVAQRPPAVRAQDGPL- 163
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
++E+G G+GAI +SLL PK + IA+D+ + A LT +NA + +++++ H +I S+
Sbjct: 164 ILEVGCGSGAIALSLLSQLPKTQVIAVDKEEAAVSLTLENAQRLQLQDRIRIIHLDITSE 223
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262
G +L P DLVVSNPPY+ D+ +L PEI YED+ ALDGG +G++II I
Sbjct: 224 GCCTHLLP---WGPMDLVVSNPPYIFRKDMEQLAPEIRSYEDLVALDGGDEGMDIITHIL 280
Query: 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
L +GSIFLE + H + + WL + L LV +DF + RF+ ++
Sbjct: 281 TLAPWLLNASGSIFLEVDPRHPELVSSWLQ-SQPDLHLSLVGVREDFCGRPRFLHVQ 336
|
|
| UNIPROTKB|Q9Y5R4 HEMK1 "HemK methyltransferase family member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 112/306 (36%), Positives = 177/306 (57%)
Query: 19 LATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQ 78
LA ++ ++ ++ WT FE+ IPE S + I+AH+ + LT+ Q
Sbjct: 35 LAGLSSAIE-LVSHWTGVFEKRGIPEARESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQ 93
Query: 79 ITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNH 138
+ + +L RL RMPVQYI+ EW+F+ L+L+M PPVFIPR ETEEL++ + +++ +H
Sbjct: 94 LQCIRELSSRRLQRMPVQYILGEWDFQGLSLRMVPPVFIPRPETEELVEWVLEEVAQRSH 153
Query: 139 ---TPTR--MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
+P ++E+G G+GAI++SLL P+ + IA+D+ + A LT +NA + +++
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIW 213
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
+ H ++ S+ +L P DL+VSNPPYV D+ +L PEI YED ALDGG +
Sbjct: 214 IIHLDMTSERSWTHL-P---WGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEE 269
Query: 254 GLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKD 313
G++II I LK +GSIFLE + H + + WL + L LV +DF +
Sbjct: 270 GMDIITHILALAPRLLKDSGSIFLEVDPRHPELVSSWLQ-SRPDLYLNLVAVRRDFCGRP 328
Query: 314 RFVELK 319
RF+ ++
Sbjct: 329 RFLHIR 334
|
|
| FB|FBgn0031817 CG9531 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 100/291 (34%), Positives = 175/291 (60%)
Query: 32 EWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLA 91
+W K + A + + + +++ I++H+ K V +L Q+ + E R A
Sbjct: 46 QWEEKLKAAGVEDRKFNVKCIVSHVLKQ-KFSSVPDSFDQLQLNPGQLADFERFLEARCA 104
Query: 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTG 151
RMP+Q+II EW+F D+TLK +P VFIPR ETEE + ++ D +++ H ++E+G G+G
Sbjct: 105 RMPLQHIIGEWDFMDITLKTSPSVFIPRPETEEFMRLVIDDHKNAKHVD--LLEVGCGSG 162
Query: 152 AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211
A+++S+L P++ A AI++SK A L +NA M + N+ +V + ++ K L PD
Sbjct: 163 AMSLSMLHSLPQVVATAIERSKAATVLAAENAKMLGLLNRFEVHNHTMEED---KYL-PD 218
Query: 212 LL-EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270
+L ++K+DL++SNPPYV + + L PE+ +YE++ ALDGG DGL + + + +L+
Sbjct: 219 VLKDKKYDLIISNPPYVKTEEFQFLHPEVVVYENLNALDGGSDGLRVARLVFDLACRHLR 278
Query: 271 PNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321
P G ++LE +DH +K + + + +LK + Y D ++RFV+++ V
Sbjct: 279 PGGKLWLELGNDHPPMVKTIMNL-KYEGRLKFIAGYSDQYQRERFVQIEKV 328
|
|
| UNIPROTKB|E2RK46 HEMK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 111/296 (37%), Positives = 171/296 (57%)
Query: 29 VLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCEC 88
+++ WTA FE+ IPE + S + I+AH+ + LT Q+ + +L
Sbjct: 44 LVRHWTAVFEKRGIPEAQASSEYIVAHVLGAKTFQSLRPELWTQPLTPWQLQCIQELSSR 103
Query: 89 RLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS-----NHTPTRM 143
RL RMPVQYI+ EW+F+ L+LKM PPVFIPR ETEEL++ + +++ S +
Sbjct: 104 RLQRMPVQYILGEWDFQGLSLKMAPPVFIPRPETEELVEWVLEEVAQSPCAMGTQDGPLI 163
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
+E+G G+GAI++SLL P+ + IA+D+ + A LTE+NA + +++++ ++ +G
Sbjct: 164 LEVGCGSGAISLSLLSQLPQSRVIAVDKGEAAICLTEENAQRLRLLDRIRIVPLDVTLEG 223
Query: 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263
+L P DLVVSNPPY+ D+ +L PEI YED ALDGG +G++II I
Sbjct: 224 SWAHLLP---WGPVDLVVSNPPYIFHQDMEQLAPEIRSYEDPLALDGGEEGMDIIIHILA 280
Query: 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
LK +GSIFLE + H + + WL + L LV +DF + RF+ ++
Sbjct: 281 LARWLLKDSGSIFLEVDPRHPELVGNWLQ-SQPDLSLDLVAMRRDFCGRPRFLHIQ 335
|
|
| ZFIN|ZDB-GENE-050208-185 hemk1 "HemK methyltransferase family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 113/301 (37%), Positives = 171/301 (56%)
Query: 20 ATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQI 79
A ++ + + W F +I EP S Q I++H+ ++ V LT+ +
Sbjct: 44 AERSITAERAVGLWAQHFSLHRISEPLLSSQYIISHVLGEKTLECVQKKRLRDTLTDKER 103
Query: 80 THLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHT 139
+ KLC RL RMPVQY+I+EW+FRDLTLKM PPVFIPR ETEEL+ ++ + ES
Sbjct: 104 ETVWKLCSKRLTRMPVQYVIEEWDFRDLTLKMKPPVFIPRPETEELVGLVLEDFESIRGD 163
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+E+G G+GAI++SLL+ P+L+ A+DQS+ A LT +NA + ++L+V H ++
Sbjct: 164 -FHGLEVGCGSGAISLSLLRSLPQLRVFALDQSQDAVCLTMENANRLGLQDRLEVHHLDV 222
Query: 200 DSKGQVKNLQPDLLE-QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
VK+ L + D +VSNPPY+ S D+ L+ EI +ED ALDGG DGL +I
Sbjct: 223 -----VKDADVILSKCNPVDFIVSNPPYILSQDMEALQTEIFGFEDHAALDGGSDGLFVI 277
Query: 259 KPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318
+PI S L G ++LE + H I++ + + +E+ D +N+ RF L
Sbjct: 278 RPILALASKLLTKQGRVYLEVSSCHPPVIQQL--VMETMPEFIYLESRCDLSNRPRFCIL 335
Query: 319 K 319
+
Sbjct: 336 Q 336
|
|
| UNIPROTKB|E1BTM2 HEMK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 110/298 (36%), Positives = 166/298 (55%)
Query: 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCE 87
+V+ W FE+ IPE S + I++ + + + LT Q + +L
Sbjct: 52 DVVSYWQKVFEKNGIPEARESSEYIVSFVLGAKTFQSLDSEKLRAPLTAVQQEQIQQLSC 111
Query: 88 CRLAR--MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHT----PT 141
RL R MPVQY++ EW+F++LTLKM PPVFIPR ETE+LI ++ ++ + + P
Sbjct: 112 KRLERHRMPVQYVLGEWDFQNLTLKMRPPVFIPRPETEDLISLVVEEESRKSFSVAVPPP 171
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++EIG G+GAI +SLL P+ + +A+D+ + A DLT +N + ++ V H + S
Sbjct: 172 VILEIGCGSGAIALSLLCKIPQSRVLAVDKEEAAVDLTRENVHRLQLQGRIHVLHHNV-S 230
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
G K+L P D +VSNPPYV D+ L+ EI YED+ ALDGG DG+ +IK I
Sbjct: 231 YGSAKHLLP---WGPMDFIVSNPPYVFHEDMASLDAEILRYEDLDALDGGDDGMRVIKTI 287
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
LK +GS+FLE + H +++WL + L L +KDF K RF+ ++
Sbjct: 288 LTLAPTLLKDSGSVFLEVDPRHPAMVEDWL-TAQPDLFLTLRAVHKDFCGKPRFLHIQ 344
|
|
| UNIPROTKB|F1MC55 HEMK1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 107/289 (37%), Positives = 156/289 (53%)
Query: 29 VLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCEC 88
V+ WT FE+ IPE S + I+AH+ + + LT Q+ + +L
Sbjct: 37 VVSHWTVVFEEKGIPEARESSEYIVAHVLGAKTFQSLRPALRTQPLTPWQLQCIQELSSY 96
Query: 89 RLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR-----M 143
RL RMPVQYI+ EW+F+ L LKM PPVFIPR ETEEL++ + +++ +
Sbjct: 97 RLQRMPVQYILGEWDFQGLNLKMAPPVFIPRPETEELVEWVLEEVTQGPRVVGAEGGPLI 156
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
+E+G G+GAI++SLL P+ + A+D+ + A LT +NA + ++Q+ ++
Sbjct: 157 LEVGCGSGAISLSLLSRLPQSRVTAVDKGEAAICLTHENAQRLRLQARIQIVTFDVTLVE 216
Query: 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263
+L P DLVVSNPPYV D+ L PEI YED ALDGG +G++II I
Sbjct: 217 SWAHLLP---WGPVDLVVSNPPYVFHRDMENLAPEILRYEDPVALDGGEEGMDIITHILA 273
Query: 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312
LK +GSIFLE + H + + WL + L LV +DF +
Sbjct: 274 LAPQLLKDSGSIFLEVDPRHPELVGSWLQ-SQPDLPLNLVAVRRDFRGR 321
|
|
| UNIPROTKB|I3LL60 HEMK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 109/302 (36%), Positives = 167/302 (55%)
Query: 29 VLKEWTAKFEQAKIPEPENSIQNIMAHIFN--TTKIDDVTIVEKNTELTNDQITHLNKLC 86
++ WTA FE+ IPE S + I+AH+ T + + + LT Q+ ++ +L
Sbjct: 44 LISHWTAVFEKRGIPEARESSEYIVAHVLGAKTGQFQSLRPGLLSQPLTRWQLRYIQELS 103
Query: 87 ECRL-ARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR--- 142
RL RMPVQYI EW+F L+LKM PP I R ETEEL++ + +++ H
Sbjct: 104 SYRLQTRMPVQYIPGEWDFHGLSLKMVPPAIILRPETEELVEWVLEEVTQRPHAVGAHGG 163
Query: 143 --MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++E+G G+GAI++SLL P+ + IA+D+ + A LT +NA + +++++ ++
Sbjct: 164 PLILEVGCGSGAISLSLLSKLPESQVIAVDKGEAAICLTHENAQRLQLQDRIRIIPLDVT 223
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260
+ +L P DLV+SNPPYV D+ +L PEI YED ALDGG +G++II
Sbjct: 224 LEQNWAHLLP---WGPVDLVISNPPYVFHRDMEQLAPEILSYEDPTALDGGEEGMDIITH 280
Query: 261 ICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320
I LK +GSIFLE + H + I WL + L LV +DF + RF+ ++
Sbjct: 281 ILALAPRLLKDSGSIFLEVDPRHPELIGSWLQ-SRPDLSLNLVAVRRDFCGRPRFLHIQR 339
Query: 321 VE 322
E
Sbjct: 340 SE 341
|
|
| UNIPROTKB|E1C5S6 HEMK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
Identities = 98/258 (37%), Positives = 147/258 (56%)
Query: 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCE 87
+V+ W FE+ IPE S + I++ + + + LT Q + +L
Sbjct: 52 DVVSYWQKVFEKNGIPEARESSEYIVSFVLGAKTFQSLDSEKLRAPLTAVQQEQIQQLSC 111
Query: 88 CRLAR--MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHT-----P 140
RL R MPVQY++ EW+F++LTLKM PPVFIPR ETE++I+++ +++ + P
Sbjct: 112 KRLERHRMPVQYVLGEWDFQNLTLKMRPPVFIPRPETEKIIEVVGEEVTCGHFVIIAVPP 171
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++EIG G+GAI +SLL P+ + +A+D+ + A DLT +N + ++ V H +
Sbjct: 172 PVILEIGCGSGAIALSLLCKIPQSRVLAVDKEEAAVDLTRENVHRLQLQGRIHVLHHNV- 230
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260
S G K+L P D +VSNPPYV D+ L+ EI YED+ ALDGG DG+ +IK
Sbjct: 231 SYGSAKHLLP---WGPMDFIVSNPPYVFHEDMASLDAEILRYEDLDALDGGDDGMRVIKT 287
Query: 261 ICVFGSNYLKPNGSIFLE 278
I LK +GS+FLE
Sbjct: 288 ILTLAPTLLKDSGSVFLE 305
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q98G94 | PRMC_RHILO | 2, ., 1, ., 1, ., n, 1, 6 | 0.2577 | 0.8291 | 0.9206 | yes | N/A |
| Q9RXR2 | PRMC_DEIRA | 2, ., 1, ., 1, ., n, 1, 6 | 0.2542 | 0.8291 | 0.9604 | yes | N/A |
| Q8G3P4 | PRMC_BIFLO | 2, ., 1, ., 1, ., n, 1, 6 | 0.2617 | 0.8788 | 0.9625 | yes | N/A |
| Q2RWE0 | PRMC_RHORT | 2, ., 1, ., 1, ., n, 1, 6 | 0.2533 | 0.8416 | 0.8338 | yes | N/A |
| A9CG70 | PRMC_AGRT5 | 2, ., 1, ., 1, ., n, 1, 6 | 0.2447 | 0.8322 | 0.9273 | yes | N/A |
| Q727D9 | PRMC_DESVH | 2, ., 1, ., 1, ., n, 1, 6 | 0.2574 | 0.8571 | 0.9355 | yes | N/A |
| Q9K4E3 | PRMC_STRCO | 2, ., 1, ., 1, ., n, 1, 6 | 0.2517 | 0.8260 | 0.9466 | yes | N/A |
| B5YIQ8 | PRMC_THEYD | 2, ., 1, ., 1, ., n, 1, 6 | 0.3074 | 0.7857 | 0.9068 | yes | N/A |
| Q9Y5R4 | HEMK1_HUMAN | 2, ., 1, ., 1, ., - | 0.3627 | 0.9161 | 0.8727 | yes | N/A |
| Q2RFW1 | PRMC_MOOTA | 2, ., 1, ., 1, ., n, 1, 6 | 0.2569 | 0.8354 | 0.9505 | yes | N/A |
| Q32GZ5 | PRMC_SHIDS | 2, ., 1, ., 1, ., n, 1, 6 | 0.2561 | 0.8167 | 0.9494 | yes | N/A |
| B8E004 | PRMC_DICTD | 2, ., 1, ., 1, ., n, 1, 6 | 0.3064 | 0.7080 | 0.8085 | yes | N/A |
| Q9CHX0 | PRMC_LACLA | 2, ., 1, ., 1, ., n, 1, 6 | 0.3132 | 0.6987 | 0.8333 | yes | N/A |
| Q814U1 | PRMC_BACCR | 2, ., 1, ., 1, ., n, 1, 6 | 0.2596 | 0.8354 | 0.9505 | yes | N/A |
| P0ACC2 | PRMC_SHIFL | 2, ., 1, ., 1, ., n, 1, 6 | 0.2561 | 0.8167 | 0.9494 | yes | N/A |
| Q8DPZ3 | PRMC_STRR6 | 2, ., 1, ., 1, ., n, 1, 6 | 0.3376 | 0.6211 | 0.7168 | yes | N/A |
| O66506 | PRMC_AQUAE | 2, ., 1, ., 1, ., n, 1, 6 | 0.3360 | 0.7049 | 0.8078 | yes | N/A |
| Q921L7 | HEMK1_MOUSE | 2, ., 1, ., 1, ., - | 0.3825 | 0.8913 | 0.8441 | yes | N/A |
| Q87DF7 | PRMC_XYLFT | 2, ., 1, ., 1, ., n, 1, 6 | 0.3004 | 0.6708 | 0.7854 | yes | N/A |
| Q81JX2 | PRMC_BACAN | 2, ., 1, ., 1, ., n, 1, 6 | 0.2692 | 0.8322 | 0.9469 | yes | N/A |
| Q9KQ26 | PRMC_VIBCH | 2, ., 1, ., 1, ., n, 1, 6 | 0.2655 | 0.8416 | 0.9475 | yes | N/A |
| Q9A9T7 | PRMC_CAUCR | 2, ., 1, ., 1, ., n, 1, 6 | 0.2979 | 0.8447 | 0.9411 | yes | N/A |
| Q748B2 | PRMC_GEOSL | 2, ., 1, ., 1, ., n, 1, 6 | 0.3271 | 0.6180 | 0.7007 | yes | N/A |
| Q8KCD5 | PRMC_CHLTE | 2, ., 1, ., 1, ., n, 1, 6 | 0.2798 | 0.8540 | 0.9353 | yes | N/A |
| Q97F67 | PRMC_CLOAB | 2, ., 1, ., 1, ., n, 1, 6 | 0.2768 | 0.8291 | 0.9368 | yes | N/A |
| Q8K9W9 | PRMC_BUCAP | 2, ., 1, ., 1, ., n, 1, 6 | 0.2664 | 0.8260 | 0.9672 | yes | N/A |
| P45832 | PRMC_MYCLE | 2, ., 1, ., 1, ., n, 1, 6 | 0.2611 | 0.8260 | 0.9236 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 322 | |||
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 4e-71 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 5e-70 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 4e-57 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 7e-44 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 5e-30 | |
| PRK01544 | 506 | PRK01544, PRK01544, bifunctional N5-glutamine S-ad | 2e-29 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 8e-28 | |
| TIGR03704 | 251 | TIGR03704, PrmC_rel_meth, putative protein-(glutam | 4e-23 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 8e-18 | |
| PRK14966 | 423 | PRK14966, PRK14966, unknown domain/N5-glutamine S- | 6e-16 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-14 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 4e-14 | |
| TIGR00537 | 179 | TIGR00537, hemK_rel_arch, HemK-related putative me | 3e-12 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 4e-12 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 6e-10 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 2e-09 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-08 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 2e-08 | |
| COG0030 | 259 | COG0030, KsgA, Dimethyladenosine transferase (rRNA | 2e-07 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 3e-07 | |
| smart00650 | 169 | smart00650, rADc, Ribosomal RNA adenine dimethylas | 8e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-06 | |
| PRK09489 | 342 | PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltr | 3e-06 | |
| PRK08287 | 187 | PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-meth | 4e-06 | |
| TIGR00755 | 253 | TIGR00755, ksgA, dimethyladenosine transferase | 9e-06 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-05 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-04 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 3e-04 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 5e-04 | |
| pfam00398 | 254 | pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla | 9e-04 | |
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 0.002 | |
| PRK00274 | 272 | PRK00274, ksgA, 16S ribosomal RNA methyltransferas | 0.002 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 0.002 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 4e-71
Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 26/282 (9%)
Query: 39 QAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYI 98
A++ P + ++AH+ ++ D ++ ELT +++ L R A P+QYI
Sbjct: 12 TARLASPRLDAELLLAHVLGLSRTD--LLLNPEEELTPEELERFRALVARRAAGEPLQYI 69
Query: 99 IKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLL 158
+ E F L K++P V IPR ETEEL++ + L P R++++G+G+GAI ++L
Sbjct: 70 LGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALL--LKEPLRVLDLGTGSGAIALALA 127
Query: 159 KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE---- 214
K P + A+D S A + +NA H + +++ D E
Sbjct: 128 KERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG-------------DWFEPLPG 173
Query: 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274
+FDL+VSNPPY+P DI L+PE+ +E AL GG DGL+ + I YLKP G
Sbjct: 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233
Query: 275 IFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
+ LE +D + ++ L G VE KD +DR V
Sbjct: 234 LLLEIGYDQGEAVRALLAAAG----FADVETRKDLAGRDRVV 271
|
Length = 275 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 5e-70
Identities = 90/269 (33%), Positives = 131/269 (48%), Gaps = 27/269 (10%)
Query: 52 IMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKM 111
++AH+ + D ++ ELT +++ + L R PV YI+ E F L K+
Sbjct: 5 LLAHVLGKDRAD--LLLHPEEELTPEELARFDALLARRAKGEPVAYILGEREFYGLDFKV 62
Query: 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
+P V IPR ETEEL++ LE P R++++G+G+GAI ++L K P + A+D
Sbjct: 63 SPGVLIPRPETEELVEAA---LERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDI 119
Query: 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE----QKFDLVVSNPPYV 227
S A + +NA + N V+ LQ D E KFDL+VSNPPY+
Sbjct: 120 SPEALAVARKNAARLGLDN--------------VEFLQSDWFEPLPGGKFDLIVSNPPYI 165
Query: 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI 287
P DI L+PE+ +E AL GG DGL+ + I LKP G + LE +D + +
Sbjct: 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAV 225
Query: 288 KEWLGICGHHMKLKLVENYKDFNNKDRFV 316
+ VE KD KDR V
Sbjct: 226 RALF----EAAGFADVETRKDLAGKDRVV 250
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 4e-57
Identities = 88/272 (32%), Positives = 130/272 (47%), Gaps = 25/272 (9%)
Query: 52 IMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKM 111
++ D + + EL+ +++ L +L E R PV YI+ F L K+
Sbjct: 27 LLLLHLLGKPRDQL-LAHPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKV 85
Query: 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
V IPR +TE L++ L R++++G+G+GAI I+L K P + IA+D
Sbjct: 86 DEGVLIPRPDTELLVEAA---LALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDI 142
Query: 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ---KFDLVVSNPPYVP 228
S A L +NA + + L V Q DL E KFDL+VSNPPY+P
Sbjct: 143 SPDALALARENAERNGLVRVLVV--------------QSDLFEPLRGKFDLIVSNPPYIP 188
Query: 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIK 288
+ + P+L PE+ YE + AL GG DGL + + I + LKP G + LE + +K
Sbjct: 189 A-EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVK 247
Query: 289 EWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320
G ++VE KD +DR V KL
Sbjct: 248 ALFEDTG---FFEIVETLKDLFGRDRVVLAKL 276
|
Length = 280 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 7e-44
Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 22/250 (8%)
Query: 71 NTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIIT 130
ELT D+ + +L R+ +PV Y++ F L + V IPR ETEEL++
Sbjct: 47 TEELTPDEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKAL 106
Query: 131 DKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
L S N ++++G+G+G I ++L FP + IA+D S A + E+NA + +
Sbjct: 107 ASLISQNPI-LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-- 163
Query: 191 QLQVFHAEIDSKGQVKNLQPDLLE----QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIK 246
+ +V+ +Q +L E QK D++VSNPPY+ D P + +E +
Sbjct: 164 -----------EHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEED-LADLPNVVRFEPLL 211
Query: 247 ALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENY 306
AL GG DGLNI++ I +YLKPNG + E + +KE L I VEN
Sbjct: 212 ALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYD---VENG 268
Query: 307 KDFNNKDRFV 316
+D N K+R V
Sbjct: 269 RDLNGKERVV 278
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-30
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 18/217 (8%)
Query: 74 LTNDQITHLNKLCECRLA-RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK 132
LT + + +L E R+ R+PV Y+ E F L + V IPRS ELI+ D
Sbjct: 56 LTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIE---DG 112
Query: 133 LES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
R++++ +G+G I I+ FP+ + A+D S A + E N H + +
Sbjct: 113 FAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLED 172
Query: 191 QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDG 250
++ + + +L L +K+DL+VSNPPYV + D+ L E +E AL
Sbjct: 173 RVTLIQS---------DLFAALPGRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALAS 222
Query: 251 GHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLD 285
G DGL++++ I +++L NG + +E + + L+
Sbjct: 223 GEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALE 259
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-29
Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 39/319 (12%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +L + T K + I P+ + ++ H+ N K + ++ + +L +I KL
Sbjct: 5 IKQILSDATDKLNKIGISSPQLEARILLQHVIN--KPIEYLLINLDEQLNEAEIEAFEKL 62
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR--- 142
E RL P+ YI F + V IPRS+TE L+D++ + P +
Sbjct: 63 LERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQL 122
Query: 143 -------------------MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183
++E+G+G+G I ISLL P IA D S A ++ + NA
Sbjct: 123 NPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA 182
Query: 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYE 243
+ + V +++Q+ H+ N ++ +QKFD +VSNPPY+ + ++ E YE
Sbjct: 183 IKYEVTDRIQIIHS---------NWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYE 233
Query: 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLV 303
AL DGL I +LKPNG I LE + + + G++ +
Sbjct: 234 PSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYN-----I 288
Query: 304 EN-YKDFNNKDRFVELKLV 321
E+ YKD R + + +
Sbjct: 289 ESVYKDLQGHSRVILISPI 307
|
Length = 506 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 8e-28
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 74 LTNDQITHLNKLCECRLA-RMPVQYIIKE-WNFRDLTLKMTPPVFIPRSETEELIDIITD 131
LT + + +L E R+ R+P Y+ E W F L + V +PRS ELI+ D
Sbjct: 68 LTPSEKARILELIERRINERIPAAYLTNEAW-FCGLEFYVDERVLVPRSPIAELIE---D 123
Query: 132 KLES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA 189
+ TR++++ +G+G I I+ FP + A+D S A + E N H +
Sbjct: 124 GFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE 183
Query: 190 NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKL------EPEIALYE 243
+++ + + +L L +++DL+VSNPPYV + D+ L EPE+
Sbjct: 184 DRVTLIES---------DLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPEL---- 230
Query: 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET--NHDHL 284
AL G DGL++++ I +YL +G + +E + HL
Sbjct: 231 ---ALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVHL 270
|
Length = 307 |
| >gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 4e-23
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 21/205 (10%)
Query: 80 THLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHT 139
L + + R+A +P+++++ F L + + P VF+PR TE L+D + +
Sbjct: 28 GELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVD---EAAALARPR 84
Query: 140 PTRM--IEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQ-LQV 194
+ +++ G+GA+ +L +L A ID + C N+A+ V
Sbjct: 85 SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC-------ARRNLADAGGTV 137
Query: 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG 254
G + + P L + D++ +N PYVP+ I + PE +E ALDGG DG
Sbjct: 138 HE------GDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADG 191
Query: 255 LNIIKPICVFGSNYLKPNGSIFLET 279
L++++ + ++L P G + +ET
Sbjct: 192 LDVLRRVAAGAPDWLAPGGHLLVET 216
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 8e-18
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 29/169 (17%)
Query: 113 PPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS 172
V+ P ++ L + DK R++E+G+G+G + I K+ K + +D +
Sbjct: 3 DEVYEPAEDSFLLAENAVDKKGD------RVLEVGTGSGIVAIVAAKN--GKKVVGVDIN 54
Query: 173 KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE----QKFDLVVSNPPYVP 228
+A + + NA ++N+ N V+ ++ DL E KFD+++ NPPY+P
Sbjct: 55 PYAVECAKCNAKLNNIRNN------------GVEVIRSDLFEPFRGDKFDVILFNPPYLP 102
Query: 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277
+ + + + + AL GG DG +I YLKP G I L
Sbjct: 103 TEEEEEWDDWLNY-----ALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146
|
Length = 188 |
| >gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 6e-16
Identities = 75/307 (24%), Positives = 135/307 (43%), Gaps = 39/307 (12%)
Query: 15 QKRALATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTEL 74
++R A+ A+ + EW +K+P+ N + ++ + T++ +T E+
Sbjct: 138 KERKAASAADGIKMTFDEWLG---LSKLPK--NEARMLLQYASEYTRVQLLT--RGGEEM 190
Query: 75 TNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLE 134
++ ++L + RL PV YI+ F + P V IPR ETE L++ + +L
Sbjct: 191 PDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP 250
Query: 135 SSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194
+ R+ ++G+G+GA+ +++ P A D S A + +NA ++ +++
Sbjct: 251 ENG----RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA--DLGARVEF 304
Query: 195 FHAE-IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIP------KLEPEIALYEDIKA 247
H D+ P E K+D++VSNPPY+ + D + EP+IAL +
Sbjct: 305 AHGSWFDTD------MPS--EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTD---- 352
Query: 248 LDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYK 307
DGL+ I+ + + L G + LE D ++ L G VE
Sbjct: 353 ---FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENG----FSGVETLP 405
Query: 308 DFNNKDR 314
D DR
Sbjct: 406 DLAGLDR 412
|
Length = 423 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-14
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
R+++ G+G+GA ++ + P + + ++ A L + + +A +++V +
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALY 242
++ L FDLV+ NPPY P PK ++
Sbjct: 61 ---RELLELPDG----SFDLVLGNPPYGPRAGDPKDNRDLYDR 96
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-14
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 112 TPPVFIPRSETEELIDIITDKLESSNHTP-TRMIEIGSGTGAITISLLKHFPKLKA---I 167
P V+ P+ +T+ L D L + P R++++ +G+GA+ + A
Sbjct: 12 APGVYRPQEDTQLLADA----LAAEGLGPGRRVLDLCTGSGALAV----AAAAAGAGSVT 63
Query: 168 AIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ----KFDLVVSN 223
A+D S+ A NA++ V V + D FD+VVSN
Sbjct: 64 AVDISRRAVRSARLNALLAGV---------------DVDVRRGDWARAVEFRPFDVVVSN 108
Query: 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277
PPYVP+ +A D G DG ++ +C L P GS+ L
Sbjct: 109 PPYVPAPP-----DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157
|
Length = 223 |
| >gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-12
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
P ++EIG+GTG + I L + + D + A +NA ++NV L V ++
Sbjct: 20 PDDVLEIGAGTGLVAIRLKGKGKCI--LTTDINPFAVKELRENAKLNNV--GLDVVMTDL 75
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259
+ KFD+++ NPPY+P D + + D+ A+DGG DG +I
Sbjct: 76 ----------FKGVRGKFDVILFNPPYLPLED----DLRRGDWLDV-AIDGGKDGRKVID 120
Query: 260 PICVFGSNYLKPNGSIFL-----ETNHDHLDKIKE 289
LK G + L D DK+ E
Sbjct: 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 4e-12
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 32/143 (22%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++++G G G + +L K P L+ +D + A + N + + N +VF +++ S
Sbjct: 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLEN-GEVFWSDLYS 92
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+ KFDL++SNPP+ G ++ +
Sbjct: 93 ---------AVEPGKFDLIISNPPFH---------------------AGKATDYDVAQRF 122
Query: 262 CVFGSNYLKPNGSIFLETNHDHL 284
+ +LKP G +++ N HL
Sbjct: 123 IAGAARHLKPGGELWIVANR-HL 144
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++G+G GA+ + L + K K + ++ + A ++ ++N ++ + ++QV A+I
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI-- 104
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEP--EIALYEDIKALDGGHDGLNIIK 259
K L+ FDL++ NPPY P IA +E + + L
Sbjct: 105 ----KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE----ITLDLEDL---- 152
Query: 260 PICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292
+ LKP G + + L +I E L
Sbjct: 153 --IRAAAKLLKPGGRLAFVHRPERLAEIIELLK 183
|
Length = 248 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-10
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 38/139 (27%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R+++IG GTG++ I L + FP + +D S +L +NA + ++ +
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-LALGPRITFVQGDA-- 60
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
DLLE FD V GG D L ++ +
Sbjct: 61 -----PDALDLLE-GFDAVFIG-------------------------GGGGDLLELLDAL 89
Query: 262 CVFGSNYLKPNGSIFLETN 280
++ LKP G + L
Sbjct: 90 ----ASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-09
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
EE+ + KL R+ +IG+GTG+ITI P + IAI++ + A +L E+N
Sbjct: 20 EEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERN 77
Query: 183 AVMHNVANQLQVFHAE 198
A V N L+V +
Sbjct: 78 AARFGVDN-LEVVEGD 92
|
Length = 187 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-08
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++G GTGA+ ++L P + +D S A +L + A +A+ ++V +
Sbjct: 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAA-AALLADNVEVLKGDA-- 56
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLD 231
P ++ FD+++S+PP ++
Sbjct: 57 -----EELPPEADESFDVIISDPPLHHLVE 81
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
+ +IG+GTG++TI + P + AI+++ A DL E+N V+N
Sbjct: 22 VLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSN 70
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
+ID I + S ++EIG G GA+T LL+ ++ AI ID+ + A L E+ A
Sbjct: 18 VIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDR-RLAEVLKERFAP 74
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLE-QKFDLVVSNPPY 226
N L V + + L+ D + VV+N PY
Sbjct: 75 YDN----LTVINGDA--------LKFDFPSLAQPYKVVANLPY 105
|
Length = 259 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 83 NKLCECRLARMPVQYIIKEW----NFRDLTLKMTPPVFIPRSETEELIDIITDKLESS-- 136
P EW +LT K P VF S + +D + L +
Sbjct: 101 CMRLHYYSENPPPFADEPEWKVYLLGHELTFKTLPGVF---SRDK--LDKGSRLLLETLP 155
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
+++++G G G + + L K P+ K +D + A + +N + V N +V+
Sbjct: 156 PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWA 214
Query: 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225
+ + E KFDL++SNPP
Sbjct: 215 SNLYEPV----------EGKFDLIISNPP 233
|
Length = 300 |
| >gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 8e-07
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
+ID I ++EIG G GA+T LL+ ++ AI ID + A L E+ A
Sbjct: 1 VIDKIVRAANLRPGDT--VLEIGPGKGALTEELLERAKRVTAIEIDP-RLAPRLREKFAA 57
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
N+ V H + L+ DL + + VV N PY
Sbjct: 58 ADNL----TVIHGDA--------LKFDLPKLQPYKVVGNLPY 87
|
Length = 169 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ--NAVMHNVANQLQVFHAEIDS 201
++IG GTG + +LL+ P L+ +D S A + + A+ A ++++ +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI- 59
Query: 202 KGQVKNLQPDLLEQKFDLVVSN 223
DL FD+VV++
Sbjct: 60 ---------DLDPGSFDVVVAS 72
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 23/131 (17%)
Query: 100 KEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS--NHTPTRMIEIGSGTGAITISL 157
KE+ LT+K P VF S +D+ + L S+ HT +++++G G G ++ L
Sbjct: 160 KEYQVDGLTVKTLPGVF---SRDG--LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVL 214
Query: 158 LKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV--KNLQPDLLEQ 215
+H PK++ D A L A + AN L+ G+V N+ D+ +
Sbjct: 215 ARHSPKIRLTLSDV--SAAALESSRATL--AANGLE---------GEVFASNVFSDI-KG 260
Query: 216 KFDLVVSNPPY 226
+FD+++SNPP+
Sbjct: 261 RFDMIISNPPF 271
|
Length = 342 |
| >gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
EE+ + KLE H +I++G+GTG+++I FP L+ AI+++ A L ++N
Sbjct: 17 EEVRALALSKLEL--HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKEN 74
Query: 183 AV---MHNVA 189
N+
Sbjct: 75 RQRFGCGNID 84
|
Length = 187 |
| >gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 9e-06
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 24/109 (22%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS-----KHACD 177
E +I I + ++EIG G GA+T LLK K+ AI ID+ +
Sbjct: 15 ESVIQKIVEAANVLE--GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDRRLAERLRKLLS 72
Query: 178 LTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
L E ++ A L+V E K VVSN PY
Sbjct: 73 LYENLEIIEGDA--LKVDLNE---------------FPKQLKVVSNLPY 104
|
In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 26/105 (24%)
Query: 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183
L+ ++ +K P +++IG GTG +T +LLK FP+ + IA D S A
Sbjct: 22 RLLALLKEKGIF---IPASVLDIGCGTGYLTRALLKRFPQAEFIANDIS----------A 68
Query: 184 VMHNVANQLQVFHAEIDSKGQVKNLQPD-----LLEQKFDLVVSN 223
M A+ V+ + D L + FDL+VSN
Sbjct: 69 GML--------AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSN 105
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204
++G GTG + L +D SK A +L ++ +++ A+
Sbjct: 3 DLGCGTGRVLR-ALARAGPSSVTGVDISKEALELAKERLRDKGP--KVRFVVADA----- 54
Query: 205 VKNLQPDLLEQKFDLVVS---NPPYVPSLDIPKLEPEIA 240
++L E FDLV+ + Y+ + L E A
Sbjct: 55 -RDL--PFEEGSFDLVICAGLSLDYLSPKQLRALLREAA 90
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
LES ++++G G+G + I+ LK K K + +D A ++NA ++ V QL
Sbjct: 154 LESLVKPGETVLDVGCGSGILAIAALKLGAK-KVVGVDIDPVAVRAAKENAELNGVEAQL 212
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKAL--DG 250
+V L DL E K D+VV+N I +P I L DI AL G
Sbjct: 213 EV------------YLPGDLPEGKADVVVAN--------I-LADPLIELAPDIYALVKPG 251
Query: 251 GHDGLN-IIK 259
G+ L+ I++
Sbjct: 252 GYLILSGILE 261
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 40/175 (22%)
Query: 140 PTRMIEIGSGTGAITISLL-KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+++++G GTG +T L K P + + ID S+ A + ++NA N ++ +
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN-VEFIQGD 62
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
I+ Q++ L + FD+V+SN L+ D ++
Sbjct: 63 IEELPQLQ-----LEDNSFDVVISNE----------------------VLNHLPDPDKVL 95
Query: 259 KPICVFGSNYLKPNGSIFLETNHDH-------LDKIKEWLGICGHHMKLKLVENY 306
+ I LKP G + + D + + G+ + K +
Sbjct: 96 EEII----RVLKPGGVLIVSDPVLLSELPALLEDLERLYAGVLEGAIGKKKLLTI 146
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 9e-04
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
+I+ I DK ++EIG G GA+T L K ++ AI ID + A L E+ A+
Sbjct: 17 VINRIVDKANLQESDT--VLEIGPGKGALTTELAKRAKQVVAIEID-PRLAKRLQEKLAL 73
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI 232
NV +V H + K P LVV N PY + I
Sbjct: 74 HPNV----EVVHQDF-LKFSFPKDDP-------FLVVGNIPYNITTPI 109
|
Length = 254 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 19/91 (20%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 132 KLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191
+N + ++E+GSGTG + I++ P D + A +L ++N ++ ++++
Sbjct: 37 TPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLEE-AIELMKKNIELNGLSSK 95
Query: 192 LQVFHAEIDSKGQVKNLQPDLLE-QKFDLVV 221
+ A++ G+ +L D+ + DL++
Sbjct: 96 V---TAKVLDWGE--DLPDDVFDPHPVDLIL 121
|
Length = 170 |
| >gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
++EIG G GA+T LL+ K+ A+ ID+
Sbjct: 45 NVLEIGPGLGALTEPLLERAAKVTAVEIDR 74
|
Length = 272 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 125 LIDI-ITDKL-ESSNHTPTR-MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
LID + D++ E + T ++EIG G GA+T L K K+ AI +D
Sbjct: 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR--------- 62
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE---QKFDLVVSNPPY 226
+A L + + G V+ ++ D L+ +F+ VVSN PY
Sbjct: 63 ------LAEFL---RDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY 101
|
Length = 258 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 100.0 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 100.0 | |
| KOG2904|consensus | 328 | 100.0 | ||
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 100.0 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 100.0 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 100.0 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 100.0 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 100.0 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 100.0 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.91 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.88 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.88 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.86 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.85 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.84 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.83 | |
| KOG3191|consensus | 209 | 99.82 | ||
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.8 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.8 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.79 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.79 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.78 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.77 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.73 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.72 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.71 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.71 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.7 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.69 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.69 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.68 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.66 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.66 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.66 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.66 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.66 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.65 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.64 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.64 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.64 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.63 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.63 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.62 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.62 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.61 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.61 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.6 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.6 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.6 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.6 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.59 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.58 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.57 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.56 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.56 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.55 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.55 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.54 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.54 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.53 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.53 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.53 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.52 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.52 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.52 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.52 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.51 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.51 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.51 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 99.5 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.49 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.49 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.49 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.48 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.47 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.47 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.47 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.47 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.46 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.46 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.46 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.46 | |
| KOG1271|consensus | 227 | 99.46 | ||
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.45 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.45 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.45 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.45 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.44 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.44 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.44 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.43 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.43 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.42 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.42 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.42 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.42 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.42 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.41 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.41 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.41 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.41 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.41 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.4 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.39 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.39 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.39 | |
| PLN02476 | 278 | O-methyltransferase | 99.38 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.38 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 99.38 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.37 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.37 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.37 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.37 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.37 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.36 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.36 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.36 | |
| KOG1540|consensus | 296 | 99.36 | ||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.36 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.34 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.33 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.33 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.33 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.3 | |
| KOG2187|consensus | 534 | 99.3 | ||
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.28 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.28 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.28 | |
| KOG1270|consensus | 282 | 99.28 | ||
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.28 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.27 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.26 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.26 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.26 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.25 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.25 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.24 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.24 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.23 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.23 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.22 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.22 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.22 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.22 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.21 | |
| PLN02366 | 308 | spermidine synthase | 99.19 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.19 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.17 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.17 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.17 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.17 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.16 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.16 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.15 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.15 | |
| KOG3420|consensus | 185 | 99.14 | ||
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.13 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.13 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.11 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.09 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.09 | |
| PLN02823 | 336 | spermine synthase | 99.07 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.06 | |
| KOG4300|consensus | 252 | 99.05 | ||
| KOG2361|consensus | 264 | 99.04 | ||
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.04 | |
| KOG1499|consensus | 346 | 99.04 | ||
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.03 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.02 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 99.02 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.01 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 99.01 | |
| KOG2899|consensus | 288 | 99.0 | ||
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.0 | |
| KOG2915|consensus | 314 | 98.99 | ||
| KOG1541|consensus | 270 | 98.98 | ||
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.97 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.94 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.9 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.9 | |
| KOG1663|consensus | 237 | 98.87 | ||
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.86 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.85 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.85 | |
| KOG2730|consensus | 263 | 98.84 | ||
| KOG1500|consensus | 517 | 98.83 | ||
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.83 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.82 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 98.82 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.8 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.8 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.79 | |
| KOG0820|consensus | 315 | 98.77 | ||
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.75 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 98.75 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.73 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.73 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.72 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.71 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.71 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.69 | |
| KOG3010|consensus | 261 | 98.62 | ||
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.62 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.55 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.55 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.55 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.52 | |
| KOG2912|consensus | 419 | 98.52 | ||
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.51 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.5 | |
| KOG1661|consensus | 237 | 98.5 | ||
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.48 | |
| KOG2671|consensus | 421 | 98.47 | ||
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.44 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.42 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.39 | |
| KOG1975|consensus | 389 | 98.34 | ||
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.33 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.24 | |
| KOG1122|consensus | 460 | 98.23 | ||
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.19 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.19 | |
| KOG4589|consensus | 232 | 98.13 | ||
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.09 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.09 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 98.08 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 98.08 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.07 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.06 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.05 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.02 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.02 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.97 | |
| KOG2198|consensus | 375 | 97.91 | ||
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.89 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.86 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.84 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.81 | |
| KOG3115|consensus | 249 | 97.81 | ||
| KOG3045|consensus | 325 | 97.81 | ||
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.72 | |
| KOG3201|consensus | 201 | 97.68 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.68 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 97.68 | |
| KOG2940|consensus | 325 | 97.65 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.64 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.62 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 97.57 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.53 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.52 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.46 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.45 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.39 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.38 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.36 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.33 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.31 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.23 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 97.21 | |
| KOG3178|consensus | 342 | 97.21 | ||
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.2 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.18 | |
| KOG4058|consensus | 199 | 97.15 | ||
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 97.13 | |
| KOG1253|consensus | 525 | 97.13 | ||
| KOG1709|consensus | 271 | 97.12 | ||
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.08 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.07 | |
| KOG2078|consensus | 495 | 97.01 | ||
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.96 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.83 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.71 | |
| KOG1099|consensus | 294 | 96.68 | ||
| KOG2793|consensus | 248 | 96.58 | ||
| KOG3350|consensus | 217 | 96.52 | ||
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.52 | |
| KOG1269|consensus | 364 | 96.44 | ||
| KOG3987|consensus | 288 | 96.34 | ||
| KOG2798|consensus | 369 | 96.21 | ||
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 96.19 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.12 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.09 | |
| KOG1501|consensus | 636 | 95.97 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.81 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.76 | |
| PHA01634 | 156 | hypothetical protein | 95.53 | |
| KOG2352|consensus | 482 | 95.52 | ||
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 95.06 | |
| KOG1227|consensus | 351 | 95.03 | ||
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.8 | |
| KOG1331|consensus | 293 | 94.76 | ||
| KOG2352|consensus | 482 | 94.73 | ||
| COG4889 | 1518 | Predicted helicase [General function prediction on | 94.57 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.46 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 94.42 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.38 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.24 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 93.76 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.69 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.65 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 93.27 | |
| KOG1562|consensus | 337 | 93.04 | ||
| KOG0024|consensus | 354 | 92.71 | ||
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.61 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.55 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 92.48 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 92.44 | |
| KOG0822|consensus | 649 | 92.39 | ||
| KOG1201|consensus | 300 | 92.21 | ||
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 92.16 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 92.06 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.06 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 92.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 91.56 | |
| KOG2651|consensus | 476 | 91.29 | ||
| KOG1596|consensus | 317 | 91.29 | ||
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 90.99 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 90.78 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 90.65 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 90.1 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 90.06 | |
| KOG3924|consensus | 419 | 89.94 | ||
| PF05063 | 176 | MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen | 89.91 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 89.9 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.79 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 89.72 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 89.71 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.12 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.86 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 88.79 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.73 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 88.67 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 88.63 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.33 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 88.25 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 88.07 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 87.81 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 87.7 | |
| KOG2782|consensus | 303 | 87.57 | ||
| PRK06194 | 287 | hypothetical protein; Provisional | 87.54 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 87.45 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 87.44 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 87.42 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 87.18 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 86.56 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 86.04 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 86.03 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.0 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 85.98 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 85.92 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 85.86 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 85.63 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 85.62 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.62 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 85.54 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 85.45 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 85.36 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 85.28 | |
| KOG2920|consensus | 282 | 85.26 | ||
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 85.25 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 85.16 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 85.1 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 85.07 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 85.02 | |
| KOG2360|consensus | 413 | 84.5 | ||
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 84.48 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 84.23 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 84.12 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 84.08 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 84.06 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 83.82 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 83.65 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 83.55 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 83.51 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 83.43 | |
| KOG1205|consensus | 282 | 83.27 | ||
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.23 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 83.17 | |
| KOG0821|consensus | 326 | 83.09 | ||
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 82.98 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 82.9 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 82.87 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 82.53 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 82.5 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 82.43 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 81.94 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 81.87 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 81.74 | |
| KOG0725|consensus | 270 | 81.73 | ||
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 81.45 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 81.41 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 81.28 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 81.27 | |
| PRK08643 | 256 | acetoin reductase; Validated | 81.18 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 81.12 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 81.04 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 80.98 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 80.96 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 80.93 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 80.9 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 80.84 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.81 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 80.69 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 80.67 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 80.66 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 80.46 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 80.15 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 80.12 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 80.02 |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-55 Score=425.63 Aligned_cols=282 Identities=29% Similarity=0.464 Sum_probs=258.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEeccee
Q psy7093 24 NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWN 103 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~ 103 (322)
.|++++++++...|+++|+++|+.+|++|++|+++.++..++ .+.+.++++++.++++++++||.+|+|+|||+|+++
T Consensus 3 ~~~~~~l~~~~~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~--~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~ 80 (506)
T PRK01544 3 YSIKQILSDATDKLNKIGISSPQLEARILLQHVINKPIEYLL--INLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKE 80 (506)
T ss_pred ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcCHHHHh--hccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCE
Confidence 468899999999999999999999999999999999988777 578889999999999999999999999999999999
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccC----------------------CCCCCeEEEEcCchhHHHHHHHHhC
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESS----------------------NHTPTRMIEIGSGTGAITISLLKHF 161 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~----------------------~~~~~~iLDlg~GsG~~~~~la~~~ 161 (322)
|+|++|.|+++|||||||||.+++.+++.+... ...+.+|||+|||||++++.+++.+
T Consensus 81 F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~ 160 (506)
T PRK01544 81 FYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL 160 (506)
T ss_pred EcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHC
Confidence 999999999999999999999999998765310 1123589999999999999999998
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhc
Q psy7093 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL 241 (322)
Q Consensus 162 ~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~ 241 (322)
|+++|+++|+|+.+++.|++|+..+++.++++++++|+ ++.+ ..++||+|||||||++..+...+..++..
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~-----~~~~----~~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW-----FENI----EKQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch-----hhhC----cCCCccEEEECCCCCCchhhhhcCchhhc
Confidence 99999999999999999999999998888899999998 5443 34589999999999999988889999999
Q ss_pred ccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 242 YEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 242 ~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
|||..||+||++|+++|+.+++.+.++|+|||.+++|+|..|++.+.+++.+.| |..+.+++|++|++||+.+..
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g----~~~~~~~~D~~g~~R~v~~~~ 306 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHG----YNIESVYKDLQGHSRVILISP 306 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcC----CCceEEEecCCCCceEEEecc
Confidence 999999999999999999999999999999999999999999999999999875 678899999999999998764
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=395.19 Aligned_cols=282 Identities=30% Similarity=0.456 Sum_probs=256.0
Q ss_pred ccHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecce
Q psy7093 24 NVVDNVLKEWTAKFEQAKI-PEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEW 102 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~ 102 (322)
||+++++.++...|+++|+ .+|..++++|++|+++.++..++ .+.+.++++++.+++..+++||.+|+|++||+|++
T Consensus 1 m~~~~~~~~~~~~l~~~~~~~~~~~~a~~ll~~~l~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~r~~~~pl~yi~g~~ 78 (284)
T TIGR00536 1 MTIQEALRWASSALSRAIARENPWLEALLLLLHDLGRERDLLL--AFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGSK 78 (284)
T ss_pred CcHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCcCHHHHh--hccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcc
Confidence 5789999999999999998 48999999999999999988776 57888999999999999999999999999999999
Q ss_pred eecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 103 ~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+|+|++|.+++++|+|||+|+.+++.+++.+.... +..+|||+|||||++++.++..+|+.+|+|+|+|+.+++.|++|
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~-~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQN-PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcC-CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 99999999999999999999999999887664321 12589999999999999999998889999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..+++.++++++++|+ ++.+ ...+||+|++||||++..+...+ +++..|||..||+||.+|+++|+.++
T Consensus 158 ~~~~~~~~~v~~~~~d~-----~~~~----~~~~fDlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl~~~~~ii 227 (284)
T TIGR00536 158 AEKNQLEHRVEFIQSNL-----FEPL----AGQKIDIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGLNILRQII 227 (284)
T ss_pred HHHcCCCCcEEEEECch-----hccC----cCCCccEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHHHHHHHHH
Confidence 99999877899999999 5543 23479999999999999887777 77888999999999999999999999
Q ss_pred HHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
..+.++|+|||++++|+|+.|...+.+++...+ +|..+++++|++|++|++.++++
T Consensus 228 ~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~---~~~~~~~~~D~~g~~R~~~~~~~ 283 (284)
T TIGR00536 228 ELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKF---TWYDVENGRDLNGKERVVLGFYH 283 (284)
T ss_pred HHHHHhccCCCEEEEEECccHHHHHHHHHHhcC---CCceeEEecCCCCCceEEEEEec
Confidence 999999999999999999999999999998532 37889999999999999998764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=374.10 Aligned_cols=289 Identities=33% Similarity=0.514 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCe
Q psy7093 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDL 107 (322)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~ 107 (322)
+....|+..|+++|+++.+.+.++|.+|+++.. ...+.++..+.++...|++.++.++.+|+++.|+|||+|.++|.++
T Consensus 37 ~~~~~W~~~l~~~~~e~~k~~~~~i~shvL~~K-f~si~ds~~~~pl~~~ql~~i~~~~~~R~~r~PlQYIlg~~~F~~l 115 (328)
T KOG2904|consen 37 ELLLPWTRTLEQAGEESSKLSYKWIVSHVLPDK-FWSIEDSIVDDPLVILQLESIRWACLQRYKRMPLQYILGSQPFGDL 115 (328)
T ss_pred HhhchHHHHHHHhcCchhhhhhHHHHHhhhhhh-hccccchhhccccchhHHHHHHHHHHHHHhcCChhheeccCccCCc
Confidence 444589999999999999999999999999976 5666667788999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccCchhHHHHHHHHHHhccCCC-CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 108 TLKMTPPVFIPRSETEELIDIITDKLESSNH-TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 108 ~~~v~~~~~iprp~te~lv~~i~~~~~~~~~-~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
++.+.|+|||||||||++++++++.+..... ++..|||+||||||+++++++.+|+..|+|+|.|+.|+.+|.+|++++
T Consensus 116 ~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~ 195 (328)
T KOG2904|consen 116 DLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL 195 (328)
T ss_pred eEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875432 335799999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh
Q psy7093 187 NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS 266 (322)
Q Consensus 187 ~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~ 266 (322)
++.+++.+++.+...+. +... ....+++|+++|||||+...++..+.++|+.|||..||+||.+|++++..+...+.
T Consensus 196 ~l~g~i~v~~~~me~d~-~~~~--~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 196 KLSGRIEVIHNIMESDA-SDEH--PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred hhcCceEEEeccccccc-cccc--ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 99999999866541111 2221 23568999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCcEEEEEEc--CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 267 NYLKPNGSIFLETN--HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 267 ~~Lk~gG~l~~e~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
++|+|||.+++|++ ..+...++.++..... ..+..+.+..|++|++|||++.+.
T Consensus 273 R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~-d~~~~~~v~~Df~~~~Rfv~i~r~ 328 (328)
T KOG2904|consen 273 RMLQPGGFEQLELVERKEHSYLVRIWMISLKD-DSNGKAAVVSDFAGRPRFVIIHRI 328 (328)
T ss_pred hhcccCCeEEEEecccccCcHHHHHHHHhchh-hccchhheeecccCCcceEEEEeC
Confidence 99999999999998 7777878888765421 246778999999999999998763
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=380.57 Aligned_cols=277 Identities=32% Similarity=0.524 Sum_probs=254.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEeccee
Q psy7093 24 NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWN 103 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~ 103 (322)
||++++++++.+.|+++| .++..+++.++.+.++.++..+. .+....++.++.+++.+++.||.+|+|++||+|.++
T Consensus 1 ~~~~~~l~~a~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~ 77 (280)
T COG2890 1 MTIRQALREAVSRLSAAG-GTPNLDAELLLLHLLGKPRDQLL--AHPEAELSEEELERLRELLERRAEGEPVAYILGSAE 77 (280)
T ss_pred CcHHHHHHHHHHHHHhcC-CCCcccHHHHHHHHhCCCHHHHh--hccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCe
Confidence 689999999999999999 77888999999999998877666 678888999999999999999999999999999999
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|++++|.++++|++|||+|+.+++.++....... .+|||+|||||+++++++++.|.++|+|+|+|+.|++.|++|+
T Consensus 78 f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~---~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 78 FGGLRFKVDEGVLIPRPDTELLVEAALALLLQLD---KRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred ecceeeeeCCCceecCCchHHHHHHHHHhhhhcC---CcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 9999999999999999999999999885444431 2799999999999999999999999999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++ .++.++++|+ ++.+ .++||+|||||||++.. ...+.+++..|||..||++|.+|+++|++++.
T Consensus 155 ~~~~l-~~~~~~~~dl-----f~~~-----~~~fDlIVsNPPYip~~-~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~ 222 (280)
T COG2890 155 ERNGL-VRVLVVQSDL-----FEPL-----RGKFDLIVSNPPYIPAE-DPELLPEVVRYEPLLALVGGGDGLEVYRRILG 222 (280)
T ss_pred HHcCC-ccEEEEeeec-----cccc-----CCceeEEEeCCCCCCCc-ccccChhhhccCHHHHHccCccHHHHHHHHHH
Confidence 99998 5688888899 6665 34999999999999998 67788999999999999999999999999999
Q ss_pred HHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
++.++|+|||++++|+|.+|.+.+.+++.+.++ |..+.+.+|+.|.+|++.+++.
T Consensus 223 ~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~---~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 223 EAPDILKPGGVLILEIGLTQGEAVKALFEDTGF---FEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred hhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC---ceEEEEEecCCCceEEEEEEec
Confidence 999999999999999999999999999999873 6788999999999999998863
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-51 Score=381.91 Aligned_cols=259 Identities=25% Similarity=0.379 Sum_probs=233.6
Q ss_pred CChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchh
Q psy7093 43 PEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSET 122 (322)
Q Consensus 43 ~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~t 122 (322)
+.|+.++++|++|+++.++.+++ .+.+.++++++.++++++++||.+|+|+|||+|+++|+|.+|.+++++++|||+|
T Consensus 161 ~~p~~dA~~LL~~~l~~~r~~l~--~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT 238 (423)
T PRK14966 161 KLPKNEARMLLQYASEYTRVQLL--TRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPET 238 (423)
T ss_pred cChHHHHHHHHHHHHCcCHHHHh--hCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccH
Confidence 57889999999999999988877 6788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+++.+++.+... .+|||+|||||++++.+++..|+.+|+|+|+|+.+++.|++|++.++. +++++++|+
T Consensus 239 E~LVe~aL~~l~~~----~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl--- 309 (423)
T PRK14966 239 EHLVEAVLARLPEN----GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW--- 309 (423)
T ss_pred HHHHHHhhhccCCC----CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch---
Confidence 99999998876532 689999999999999999988899999999999999999999998774 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
++... ...++||+|+|||||++..+...++++ ..|||..||+||++|+++|+++++.+.++|+|||.+++|+|..
T Consensus 310 --~e~~l--~~~~~FDLIVSNPPYI~~~e~~l~~~~-v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 310 --FDTDM--PSEGKWDIIVSNPPYIENGDKHLLQGD-LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD 384 (423)
T ss_pred --hcccc--ccCCCccEEEECCCCCCcchhhhcchh-hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence 44311 023579999999999998876444544 4699999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 283 HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
|.+.+.+++++.| |..+++.+|++|++|++.+++.
T Consensus 385 Q~e~V~~ll~~~G----f~~v~v~kDl~G~dR~v~~~~~ 419 (423)
T PRK14966 385 QGAAVRGVLAENG----FSGVETLPDLAGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHHCC----CcEEEEEEcCCCCcEEEEEEEh
Confidence 9999999999875 6889999999999999998763
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=356.87 Aligned_cols=261 Identities=25% Similarity=0.404 Sum_probs=234.1
Q ss_pred ccccccHHHHHHHHHHHHHHcCC------CChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHH-cC
Q psy7093 20 ATKANVVDNVLKEWTAKFEQAKI------PEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRL-AR 92 (322)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~-~~ 92 (322)
.++.||++++++++...|+++|+ ++|+.++++|++|+++.++..++ .+.+.++++++.+++.++++||+ +|
T Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~l~--~~~~~~l~~~~~~~~~~~~~rr~~~~ 87 (307)
T PRK11805 10 VNELHTIRDLLRWAVSRFNAAGLFFGHGTDNAWDEAVQLVLHALHLPLDIPE--PFLDARLTPSEKARILELIERRINER 87 (307)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCccCCCCCCHHHHHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHHCC
Confidence 34689999999999999998766 67999999999999999987776 57788899999999999999998 69
Q ss_pred CCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHH-hccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeC
Q psy7093 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK-LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171 (322)
Q Consensus 93 ~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~-~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDi 171 (322)
+|+|||+|+++|+|++|.+++++|+|||+|+.+++.++.. +.... +.+|||+|||+|++++.++...|+.+|+++|+
T Consensus 88 ~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~--~~~VLDlG~GsG~iai~la~~~p~~~V~avDi 165 (307)
T PRK11805 88 IPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPP--VTRILDLCTGSGCIAIACAYAFPDAEVDAVDI 165 (307)
T ss_pred ccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCC--CCEEEEEechhhHHHHHHHHHCCCCEEEEEeC
Confidence 9999999999999999999999999999999999887753 33221 26899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 172 s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
|+.+++.|++|++.+++.++++++++|+ ++.+ +.++||+|++||||++..++..+.+++. |||..||+||
T Consensus 166 s~~al~~A~~n~~~~~l~~~i~~~~~D~-----~~~l----~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg 235 (307)
T PRK11805 166 SPDALAVAEINIERHGLEDRVTLIESDL-----FAAL----PGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAG 235 (307)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEECch-----hhhC----CCCCccEEEECCCCCCccchhhcCHhhc-cCccceeeCC
Confidence 9999999999999999877899999998 5543 2457999999999999988888888885 9999999999
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
++|+++|+.+++.+.++|+|||.+++|+++.+. .+.+++...+
T Consensus 236 ~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~-~~~~~~~~~~ 278 (307)
T PRK11805 236 DDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRV-HLEEAYPDVP 278 (307)
T ss_pred CchHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHHHHhhCC
Confidence 999999999999999999999999999999866 4888887754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-48 Score=350.86 Aligned_cols=257 Identities=26% Similarity=0.388 Sum_probs=230.9
Q ss_pred cHHHHHHHHHHHHHHcC------CCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHH-cCCCcee
Q psy7093 25 VVDNVLKEWTAKFEQAK------IPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRL-ARMPVQY 97 (322)
Q Consensus 25 ~~~~~~~~~~~~l~~~~------~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~-~~~p~~y 97 (322)
|+++++.++...|++++ +++|+.+|++|++|+++.++..++ .+.+.++++++.+++.++++||. +|+|+||
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~y 80 (284)
T TIGR03533 3 TIRDFLRWAVSRFNAAGLFFGHGTDNAWDEAVYLVLHALHLPLDILE--PFLDARLTPSEKERILELIERRIEERIPVAY 80 (284)
T ss_pred cHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHhCCCcHHH
Confidence 57888998999998854 478999999999999999988777 57788999999999999999998 6999999
Q ss_pred EecceeecCeEEEeCCCCcccCchhHHHHHHHHHH-hccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHH
Q psy7093 98 IIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK-LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176 (322)
Q Consensus 98 i~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~-~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al 176 (322)
|+|+++|+|++|.+++++|+|||+|+.+++..+.. +... .+.+|||+|||||++++.+++..|+.+|+|+|+|+.++
T Consensus 81 i~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~--~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al 158 (284)
T TIGR03533 81 LTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPE--PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL 158 (284)
T ss_pred HcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccC--CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 99999999999999999999999999999887763 3322 23689999999999999999998889999999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhH
Q psy7093 177 DLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256 (322)
Q Consensus 177 ~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~ 256 (322)
+.|++|+..+++.++++++++|+ ++.+ +.++||+|++||||++..++..+++++ .|||..||+||++|++
T Consensus 159 ~~A~~n~~~~~~~~~i~~~~~D~-----~~~~----~~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep~~al~gg~dGl~ 228 (284)
T TIGR03533 159 AVAEINIERHGLEDRVTLIQSDL-----FAAL----PGRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALASGEDGLD 228 (284)
T ss_pred HHHHHHHHHcCCCCcEEEEECch-----hhcc----CCCCccEEEECCCCCCccchhhCCHhh-hcCHHHHhcCCCcHHH
Confidence 99999999999877899999998 5543 345799999999999999888888888 5999999999999999
Q ss_pred HHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 257 IIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 257 ~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
+|+.++..+.++|+|||++++|+++.+ ..+.+++...++
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF 267 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence 999999999999999999999999977 689999988764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=342.07 Aligned_cols=275 Identities=33% Similarity=0.560 Sum_probs=248.3
Q ss_pred cccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecce
Q psy7093 23 ANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEW 102 (322)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~ 102 (322)
.|++++++.++.+.|++ ++.++++|++++++.++..+. .+.+..++.++.+++.+++.||.+|+|++|++|.+
T Consensus 1 ~~~~~~~~~~~~~~l~~-----~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~ 73 (275)
T PRK09328 1 MMTIAEALREATARLAS-----PRLDAELLLAHVLGLSRTDLL--LNPEEELTPEELERFRALVARRAAGEPLQYILGEA 73 (275)
T ss_pred CccHHHHHHHHHHHHhC-----cHHHHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceec
Confidence 36889999999988875 677999999999999887766 56778889999999999999999999999999999
Q ss_pred eecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 103 ~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+||+..|.+++++++|||+|+.+++.+....... ++.+|||+|||+|++++.++...|..+++|+|+|+.+++.|++|
T Consensus 74 ~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~--~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 74 EFWGLDFKVSPGVLIPRPETEELVEWALEALLLK--EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred eEcCcEEEECCCceeCCCCcHHHHHHHHHhcccc--CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 9999999999999999999999999998665443 23789999999999999999999889999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+. .....++.++++|+ +..+ ..++||+|++||||++......+.++++.|||..|+++|.+|+++|+.++
T Consensus 152 ~~-~~~~~~i~~~~~d~-----~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~ 221 (275)
T PRK09328 152 AK-HGLGARVEFLQGDW-----FEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRII 221 (275)
T ss_pred HH-hCCCCcEEEEEccc-----cCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHH
Confidence 98 33345699999998 5443 24689999999999999888888999999999999999999999999999
Q ss_pred HHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+.+.++|+|||++++|+++.+.+.+.+++.+.| |..+++++|++|++|++.+++
T Consensus 222 ~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~g----f~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 222 EQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAG----FADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred HHHHHhcccCCEEEEEECchHHHHHHHHHHhCC----CceeEEecCCCCCceEEEEEC
Confidence 999999999999999999999999999999865 788999999999999999864
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=323.40 Aligned_cols=242 Identities=22% Similarity=0.360 Sum_probs=214.8
Q ss_pred HHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCC
Q psy7093 35 AKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPP 114 (322)
Q Consensus 35 ~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~ 114 (322)
..|.++|+++|+.+|++|++|+.. .++++.+++||.+|+|+|||+|+++|++++|.++++
T Consensus 3 ~~~~~~g~~~~~~~a~~l~~~~~~--------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~ 62 (251)
T TIGR03704 3 TRLRAAGCVFAEDEAALLVDAART--------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPG 62 (251)
T ss_pred hhHHhcCCCCHHHHHHHHHHhccC--------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCC
Confidence 467899999999999999999831 367999999999999999999999999999999999
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~ 194 (322)
+|+||++|+.+++.++..+.... .+.+|||+|||+|++++.+++..++.+|+++|+|+.+++.|++|+..++ +++
T Consensus 63 vf~pr~~Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~ 137 (251)
T TIGR03704 63 VFVPRRRTEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTV 137 (251)
T ss_pred CcCCCccHHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEE
Confidence 99999999999999988765321 2258999999999999999998888899999999999999999998765 478
Q ss_pred EEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 195 ~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
+++|+ ++.++... .++||+|++||||++..+...++++++.|||..||+||.+|+++++.++..+.++|+|||+
T Consensus 138 ~~~D~-----~~~l~~~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 138 HEGDL-----YDALPTAL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred EEeec-----hhhcchhc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 89998 54443211 3579999999999999988889999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCC
Q psy7093 275 IFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFN 310 (322)
Q Consensus 275 l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~ 310 (322)
+++|++..|...+.++++++++ ...+..++|++
T Consensus 212 l~l~~~~~~~~~v~~~l~~~g~---~~~~~~~~~~~ 244 (251)
T TIGR03704 212 LLVETSERQAPLAVEAFARAGL---IARVASSEELY 244 (251)
T ss_pred EEEEECcchHHHHHHHHHHCCC---CceeeEccccc
Confidence 9999999999999999999875 45677788884
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=291.48 Aligned_cols=251 Identities=33% Similarity=0.585 Sum_probs=229.2
Q ss_pred HHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHH
Q psy7093 48 SIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELID 127 (322)
Q Consensus 48 ~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~ 127 (322)
++++|++|++++++...+ ......++.++.+++..++.+|..++|++|++|.++|++..+.+++++++|+|+++.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 78 (251)
T TIGR03534 1 DAELLLAHVLGKDRTDLL--LHPEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVE 78 (251)
T ss_pred CHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHH
Confidence 368899999998776555 456778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++.+... +.+|||+|||+|+++..++..+|..+++|+|+++.+++.|+.|+...++. +++++++|+ ++.
T Consensus 79 ~~l~~~~~~---~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~-----~~~ 149 (251)
T TIGR03534 79 AALERLKKG---PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDW-----FEP 149 (251)
T ss_pred HHHHhcccC---CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECch-----hcc
Confidence 998877542 26899999999999999999988899999999999999999999988875 599999998 543
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHH
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI 287 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~ 287 (322)
+ ..++||+|++||||+...+...+..+++.|||..++++|.+|+..+..+++.+.++|+|||.+++++++.+.+.+
T Consensus 150 ~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~ 225 (251)
T TIGR03534 150 L----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAV 225 (251)
T ss_pred C----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHH
Confidence 2 357899999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCceeeEEEecCCCCCCeEEE
Q psy7093 288 KEWLGICGHHMKLKLVENYKDFNNKDRFVE 317 (322)
Q Consensus 288 ~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~ 317 (322)
.+++.+.| |..+++++|++|.+|+++
T Consensus 226 ~~~l~~~g----f~~v~~~~d~~~~~r~~~ 251 (251)
T TIGR03534 226 RALFEAAG----FADVETRKDLAGKDRVVL 251 (251)
T ss_pred HHHHHhCC----CCceEEEeCCCCCcCeeC
Confidence 99999875 789999999999999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=314.44 Aligned_cols=258 Identities=14% Similarity=0.227 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceee
Q psy7093 25 VVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNF 104 (322)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f 104 (322)
+-.+++...+..|.+..-+..+..|+.+|+.+-..-+.. .-+. ..-+..+-|..+.-+.-..|+++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~G~~~F 84 (1082)
T PLN02672 18 SGDAAYGAFKGVLERLEDPTTRSDARKLLSAVEKRVAAS---------EAGE----DCFATYHFRIHDLVLDDYEGFRNR 84 (1082)
T ss_pred CcHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhccc---------Cccc----chhhhcceEEeeEEEcCCCCeEEe
Confidence 445677777777777777788888998888875532211 0111 122233445555444444599999
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
|+++|.+.|+||||||+||.+++. ++..+....++.+|||+|||||++++.+++.+|..+|+|+|+|+.|++.|++|++
T Consensus 85 ~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 85 KKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred cCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 999999999999999999999998 4443221112368999999999999999999988999999999999999999999
Q ss_pred HcCC---------------CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc-----
Q psy7093 185 MHNV---------------ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED----- 244 (322)
Q Consensus 185 ~~~l---------------~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep----- 244 (322)
.+++ .++++++++|+ ++.+.. ...+||+|||||||++..++..|+++|+.|||
T Consensus 164 ~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl-----~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 164 LNALDDDGLPVYDGEGKTLLDRVEFYESDL-----LGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HcCcccccccccccccccccccEEEEECch-----hhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 8653 24799999999 554421 12379999999999999999999999998875
Q ss_pred ----cccccC---CCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHH-HHHHHcCCCCceeeEEEec
Q psy7093 245 ----IKALDG---GHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIK-EWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 245 ----~~al~~---g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~-~~l~~~~~~~~~~~v~~~~ 307 (322)
..||+| |+|||++|++++.++.++|+|||++++|+|++|++.+. +++++.| |..+++|+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~g----f~~~~~~~ 303 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRG----FRITKLWQ 303 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCC----CCeeEEee
Confidence 799987 59999999999999999999999999999999999999 6998875 67777775
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=177.64 Aligned_cols=140 Identities=34% Similarity=0.637 Sum_probs=115.2
Q ss_pred eEEEeCCCCcccC---chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFIPR---SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~ipr---p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
++|...|++|.|+ +.|+.+++.+... +..+|||+|||+|.+++.+++..|..+|+++|+++.|++.|++|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~ 75 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA 75 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 5788999999843 4566666665554 127899999999999999999999889999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++.+ ++++++|+ ++.. ..++||+|++|||+.. ++.+|.++.+.+++
T Consensus 76 ~~n~~~~-v~~~~~d~-----~~~~----~~~~fD~Iv~NPP~~~---------------------~~~~~~~~~~~~i~ 124 (170)
T PF05175_consen 76 ERNGLEN-VEVVQSDL-----FEAL----PDGKFDLIVSNPPFHA---------------------GGDDGLDLLRDFIE 124 (170)
T ss_dssp HHTTCTT-EEEEESST-----TTTC----CTTCEEEEEE---SBT---------------------TSHCHHHHHHHHHH
T ss_pred HhcCccc-cccccccc-----cccc----cccceeEEEEccchhc---------------------ccccchhhHHHHHH
Confidence 9999887 99999999 6554 3579999999999543 34468889999999
Q ss_pred HHhccCccCcEEEEEEcCCC
Q psy7093 264 FGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~ 283 (322)
++.++|+|||.+++.+....
T Consensus 125 ~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 125 QARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp HHHHHEEEEEEEEEEEETTS
T ss_pred HHHHhccCCCEEEEEeecCC
Confidence 99999999999988776544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=172.49 Aligned_cols=169 Identities=21% Similarity=0.340 Sum_probs=131.6
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
...+...+.++-+.-++-.+..++ .... ..+|||+|||+|.+++.+|++.+.+++++||+++.+.+.|++|++.
T Consensus 17 ~~~I~q~~~~~~~~~DaiLL~~~~----~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l 90 (248)
T COG4123 17 QFFIIQDRCGFRYGTDAILLAAFA----PVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL 90 (248)
T ss_pred ceEEEeCCCccccccHHHHHHhhc----cccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh
Confidence 344455556664444433333332 2221 3799999999999999999998889999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCC--CCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 186 HNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI--PKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 186 ~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~--~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+++.+++++++.|+ ..+.......+||+|||||||...... ..-.....+||.... ++.+++
T Consensus 91 n~l~~ri~v~~~Di------~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~----------le~~i~ 154 (248)
T COG4123 91 NPLEERIQVIEADI------KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD----------LEDLIR 154 (248)
T ss_pred CcchhceeEehhhH------HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC----------HHHHHH
Confidence 99999999999998 222223344579999999999988776 223345556666554 458999
Q ss_pred HHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
.+..+|||||.+.+.+.+....++.+++.+.++
T Consensus 155 ~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 155 AAAKLLKPGGRLAFVHRPERLAEIIELLKSYNL 187 (248)
T ss_pred HHHHHccCCCEEEEEecHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998775
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-21 Score=169.03 Aligned_cols=173 Identities=25% Similarity=0.395 Sum_probs=139.3
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+-+..+.+.+++|.|+.+++.+++.+... ... ++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|+
T Consensus 4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~-~~~--~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 4 TPPDALLRAPGVYRPQEDTQLLADALAAE-GLG--PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred CCCceeecCCCCcCCCCcHHHHHHHHHhc-ccC--CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHH
Confidence 34678899999999999998887766543 222 2369999999999999999886 4459999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++ +++++++|+ .+.+ ..++||+|++||||++..... ...++|..++.+|.+|...++.+++
T Consensus 80 ~~~~~--~~~~~~~d~-----~~~~----~~~~fD~Vi~npPy~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~ 143 (223)
T PRK14967 80 LLAGV--DVDVRRGDW-----ARAV----EFRPFDVVVSNPPYVPAPPDA-----PPSRGPARAWDAGPDGRAVLDRLCD 143 (223)
T ss_pred HHhCC--eeEEEECch-----hhhc----cCCCeeEEEECCCCCCCCccc-----ccccChhHhhhCCCcHHHHHHHHHH
Confidence 88876 388899998 4332 356899999999998765432 2345677888899999999999999
Q ss_pred HHhccCccCcEEEEEEcCC-CHHHHHHHHHHcCC
Q psy7093 264 FGSNYLKPNGSIFLETNHD-HLDKIKEWLGICGH 296 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~~~~ 296 (322)
.+.++|+|||.+++..... +...+.+.+++.++
T Consensus 144 ~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~ 177 (223)
T PRK14967 144 AAPALLAPGGSLLLVQSELSGVERTLTRLSEAGL 177 (223)
T ss_pred HHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCC
Confidence 9999999999999876653 66677777777663
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-20 Score=157.48 Aligned_cols=157 Identities=28% Similarity=0.352 Sum_probs=123.2
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~ 194 (322)
+++||+++..+.+.+ ...+ +.+|||+|||+|.++..++...+ +|+++|+|+.+++.|++|+..++. ++++
T Consensus 1 ~~~~~~d~~~l~~~l-~~~~-----~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~--~~~~ 70 (179)
T TIGR00537 1 VYEPAEDSLLLEANL-RELK-----PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV--GLDV 70 (179)
T ss_pred CCCCCccHHHHHHHH-HhcC-----CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC--ceEE
Confidence 578999995555443 3222 26899999999999999998743 899999999999999999988775 3889
Q ss_pred EEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 195 ~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
+++|+ .+.. .++||+|++||||++..+.... ......++.+|.+|...++.+++++.++|+|||.
T Consensus 71 ~~~d~-----~~~~-----~~~fD~Vi~n~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 71 VMTDL-----FKGV-----RGKFDVILFNPPYLPLEDDLRR-----GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred EEccc-----cccc-----CCcccEEEECCCCCCCcchhcc-----cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 99998 4432 3589999999999876543221 1122356778889999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHHcCC
Q psy7093 275 IFLETNHD-HLDKIKEWLGICGH 296 (322)
Q Consensus 275 l~~e~~~~-~~~~~~~~l~~~~~ 296 (322)
+++..... +...+.+.+++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 136 VQLIQSSLNGEPDTFDKLDERGF 158 (179)
T ss_pred EEEEEeccCChHHHHHHHHhCCC
Confidence 98876554 48888999988873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=164.61 Aligned_cols=173 Identities=24% Similarity=0.403 Sum_probs=126.9
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
.+.+|...||||.. -....=-+.+++.+..... .+|||+|||.|.+++.+++..|..+++.+|+|..|++.|++|+.
T Consensus 127 ~~~~~~t~pGVFS~-~~lD~GS~lLl~~l~~~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 127 HELTFKTLPGVFSR-DKLDKGSRLLLETLPPDLG--GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred CceEEEeCCCCCcC-CCcChHHHHHHHhCCccCC--CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 46788999999983 2222333444555554432 58999999999999999999999999999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHH
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
.+++++. .++.+|. +++. .++||+|||||||+...+. ...+-.+++..
T Consensus 204 ~N~~~~~-~v~~s~~-----~~~v-----~~kfd~IisNPPfh~G~~v---------------------~~~~~~~~i~~ 251 (300)
T COG2813 204 ANGVENT-EVWASNL-----YEPV-----EGKFDLIISNPPFHAGKAV---------------------VHSLAQEIIAA 251 (300)
T ss_pred HcCCCcc-EEEEecc-----cccc-----cccccEEEeCCCccCCcch---------------------hHHHHHHHHHH
Confidence 9998764 7888888 5554 3499999999999965542 12335699999
Q ss_pred HhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 265 GSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+.++|++||.|++... ++.. ....|++. |..+++.. ..+..+++.++|
T Consensus 252 A~~~L~~gGeL~iVan-~~l~-y~~~L~~~-----Fg~v~~la-~~~gf~Vl~a~k 299 (300)
T COG2813 252 AARHLKPGGELWIVAN-RHLP-YEKKLKEL-----FGNVEVLA-KNGGFKVLRAKK 299 (300)
T ss_pred HHHhhccCCEEEEEEc-CCCC-hHHHHHHh-----cCCEEEEE-eCCCEEEEEEec
Confidence 9999999999999665 3322 34444443 34455443 335555555554
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=152.57 Aligned_cols=181 Identities=25% Similarity=0.411 Sum_probs=142.3
Q ss_pred CCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q psy7093 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 112 ~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~ 191 (322)
++++|.|++++..+++.+.. . ++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++|+..+++.++
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~----~--~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 73 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD----K--KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNN 73 (188)
T ss_pred CCcccCcchhHHHHHHhhhc----c--CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 57889999998888776643 2 2368999999999999999988 68999999999999999999988887654
Q ss_pred -EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 192 -LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 192 -i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
+.++++|+ .+.+ ...+||+|++||||.+........ -....++.+|.+|...+..+++++.++|+
T Consensus 74 ~~~~~~~d~-----~~~~----~~~~~d~vi~n~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk 139 (188)
T PRK14968 74 GVEVIRSDL-----FEPF----RGDKFDVILFNPPYLPTEEEEEWD-----DWLNYALSGGKDGREVIDRFLDEVGRYLK 139 (188)
T ss_pred ceEEEeccc-----cccc----cccCceEEEECCCcCCCCchhhhh-----hhhhhhhccCcChHHHHHHHHHHHHHhcC
Confidence 88999998 5443 234899999999998754322211 11234667888889999999999999999
Q ss_pred cCcEEEEEEcCC-CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEE
Q psy7093 271 PNGSIFLETNHD-HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 271 ~gG~l~~e~~~~-~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~ 318 (322)
|||.+++.++.. ..+.+.+++.+.| |..+.+..+....+++..+
T Consensus 140 ~gG~~~~~~~~~~~~~~l~~~~~~~g----~~~~~~~~~~~~~~~~~~~ 184 (188)
T PRK14968 140 PGGRILLLQSSLTGEDEVLEYLEKLG----FEAEVVAEEKFPFEELIVL 184 (188)
T ss_pred CCeEEEEEEcccCCHHHHHHHHHHCC----CeeeeeeecccCCceEEEE
Confidence 999999887754 4677889998886 6666666776777766653
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=167.21 Aligned_cols=142 Identities=20% Similarity=0.342 Sum_probs=109.2
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
++++...++||.+. ....-.+.+++.++... ..+|||+|||+|.+++.+++.+|..+|+++|+|+.|++.|++|++.
T Consensus 198 ~~~~~~~~gVFs~~-~LD~GtrllL~~lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 198 DWTIHNHANVFSRT-GLDIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred eEEEEecCCccCCC-CcChHHHHHHHhCCccc--CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 56777889999843 22222334445554432 2689999999999999999999999999999999999999999988
Q ss_pred cCCC--CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 186 HNVA--NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 186 ~~l~--~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
++.. .+++++.+|. ++.+ ..++||+|+|||||+..... .. .+..+++.
T Consensus 275 n~~~~~~~v~~~~~D~-----l~~~----~~~~fDlIlsNPPfh~~~~~---~~------------------~ia~~l~~ 324 (378)
T PRK15001 275 NMPEALDRCEFMINNA-----LSGV----EPFRFNAVLCNPPFHQQHAL---TD------------------NVAWEMFH 324 (378)
T ss_pred cCcccCceEEEEEccc-----cccC----CCCCEEEEEECcCcccCccC---CH------------------HHHHHHHH
Confidence 8643 3689999998 5443 34589999999999864321 11 23468999
Q ss_pred HHhccCccCcEEEEEEc
Q psy7093 264 FGSNYLKPNGSIFLETN 280 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~ 280 (322)
.+.++|+|||.++++..
T Consensus 325 ~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 325 HARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHhcccCCEEEEEEe
Confidence 99999999999999753
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-19 Score=146.10 Aligned_cols=185 Identities=24% Similarity=0.341 Sum_probs=144.7
Q ss_pred CCcccCchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q psy7093 114 PVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~ 191 (322)
.|+-|..+|-.+++.+.+....- ...+..++|+|||||+.+..+++.. |++...++|++|.|++..++.++.++..
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-- 94 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-- 94 (209)
T ss_pred hccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--
Confidence 67889999999988776544321 1124789999999999999999875 5678899999999999999999988754
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
+..++.|+ ...+ ..++.|+++.||||++..+.+-- ..--..|+.||.+|.++..+++.+....|.|
T Consensus 95 ~~~V~tdl-----~~~l----~~~~VDvLvfNPPYVpt~~~~i~-----~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp 160 (209)
T KOG3191|consen 95 IDVVRTDL-----LSGL----RNESVDVLVFNPPYVPTSDEEIG-----DEGIASAWAGGKDGREVTDRLLPQVPDILSP 160 (209)
T ss_pred cceeehhH-----Hhhh----ccCCccEEEECCCcCcCCcccch-----hHHHHHHHhcCcchHHHHHHHHhhhhhhcCc
Confidence 88999998 5555 34899999999999998764321 1122346779999999999999999999999
Q ss_pred CcEEEEEEc-CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEE
Q psy7093 272 NGSIFLETN-HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 272 gG~l~~e~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~ 318 (322)
.|++++..- .+..+++.++++..| |....+++-.+|.+-..+.
T Consensus 161 ~Gv~Ylv~~~~N~p~ei~k~l~~~g----~~~~~~~~Rk~~~E~l~il 204 (209)
T KOG3191|consen 161 RGVFYLVALRANKPKEILKILEKKG----YGVRIAMQRKAGGETLSIL 204 (209)
T ss_pred CceEEeeehhhcCHHHHHHHHhhcc----cceeEEEEEecCCceEEEE
Confidence 999988654 567888888998886 4555566666666555443
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=157.15 Aligned_cols=208 Identities=17% Similarity=0.244 Sum_probs=143.7
Q ss_pred ecCeEE-EeCCCCcccC-chhHHHHHHHHHHhccC------CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHH
Q psy7093 104 FRDLTL-KMTPPVFIPR-SETEELIDIITDKLESS------NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175 (322)
Q Consensus 104 f~~~~~-~v~~~~~ipr-p~te~lv~~i~~~~~~~------~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~a 175 (322)
+||+.+ .+..+.+.|. |..-.++.++.+.+... .....++||||||+|++...++...++++++|+|+++.+
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~A 150 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQA 150 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHH
Confidence 467775 5777888754 66777777777765431 113478999999999999999988889999999999999
Q ss_pred HHHHHHHHHHc-CCCCcEEEEE-ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCC--hhh---hcccc-c--
Q psy7093 176 CDLTEQNAVMH-NVANQLQVFH-AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE--PEI---ALYED-I-- 245 (322)
Q Consensus 176 l~~A~~n~~~~-~l~~~i~~~~-~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~--~~v---~~~ep-~-- 245 (322)
++.|++|+..+ ++.++++++. .|..+ -+..+. ...++||+|+|||||+...+..... ... ..+.+ .
T Consensus 151 l~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~--~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 151 LASAQAIISANPGLNGAIRLRLQKDSKA--IFKGII--HKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred HHHHHHHHHhccCCcCcEEEEEccchhh--hhhccc--ccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 99999999999 7988898865 33200 022111 1356899999999999877643211 111 11111 1
Q ss_pred -------ccc--cCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeE
Q psy7093 246 -------KAL--DGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRF 315 (322)
Q Consensus 246 -------~al--~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~ 315 (322)
..| .||+ +.|+.++++++..+++..|++..-++. ...+.+.+.+++.|.. .+..+++.+ -...-|+
T Consensus 227 l~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~-~~~~~e~~q-G~~~~~~ 302 (321)
T PRK11727 227 LNFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAV-EVKTIEMAQ-GQKQSRF 302 (321)
T ss_pred cCCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCc-eEEEEEEeC-CCeeeEE
Confidence 111 2444 578999999999999999998777774 5678889999888741 233333333 3445566
Q ss_pred EEEE
Q psy7093 316 VELK 319 (322)
Q Consensus 316 ~~~~ 319 (322)
|.|.
T Consensus 303 vaWs 306 (321)
T PRK11727 303 IAWT 306 (321)
T ss_pred EEee
Confidence 6654
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=142.34 Aligned_cols=115 Identities=23% Similarity=0.385 Sum_probs=92.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.|+...++.++++++++|+ .+.. ..+..++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~-----~~~~-~~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA-----RDLP-EPLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH-----HHHH-HTCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch-----hhch-hhccCceeEEE
Confidence 589999999999999999996 6899999999999999999999999888899999998 4332 22356899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
++||||.......... -+.+..+++.+.++|+|||.+++.++
T Consensus 75 v~npP~~~~~~~~~~~------------------~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAAL------------------RRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----G------------------GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhh------------------HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999998653321111 11477999999999999999998765
|
... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=147.41 Aligned_cols=152 Identities=15% Similarity=0.242 Sum_probs=115.7
Q ss_pred CCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeC
Q psy7093 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171 (322)
Q Consensus 92 ~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDi 171 (322)
|.+.-||+|.. |+|+.+.+.++.-+ ||.++.+.+.+++.+.... .+.+|||+|||||.+++.++... ..+|+++|+
T Consensus 9 ~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~~~-~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~ 84 (199)
T PRK10909 9 GSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWLAPVI-VDARCLDCFAGSGALGLEALSRY-AAGATLLEM 84 (199)
T ss_pred CCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHHhhhc-CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEEC
Confidence 55545777766 89999998765433 9999999999888775321 23799999999999999765553 579999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 172 s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
++.+++.|++|++.+++. +++++++|+ .+.++. ...+||+|++||||...-
T Consensus 85 ~~~a~~~a~~Nl~~~~~~-~v~~~~~D~-----~~~l~~--~~~~fDlV~~DPPy~~g~--------------------- 135 (199)
T PRK10909 85 DRAVAQQLIKNLATLKAG-NARVVNTNA-----LSFLAQ--PGTPHNVVFVDPPFRKGL--------------------- 135 (199)
T ss_pred CHHHHHHHHHHHHHhCCC-cEEEEEchH-----HHHHhh--cCCCceEEEECCCCCCCh---------------------
Confidence 999999999999999875 599999998 554421 234699999999996421
Q ss_pred CChhHHHHHHHHHH--hccCccCcEEEEEEcCC
Q psy7093 252 HDGLNIIKPICVFG--SNYLKPNGSIFLETNHD 282 (322)
Q Consensus 252 ~~gl~~~~~~l~~~--~~~Lk~gG~l~~e~~~~ 282 (322)
+..++... ..+|+|+|++++|+...
T Consensus 136 ------~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 136 ------LEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred ------HHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 22333333 34689999999998764
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-18 Score=162.94 Aligned_cols=184 Identities=16% Similarity=0.252 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHHHH-------cCCCceeEecc--------eeecCeEEEeCCCCcc--cCchhHHHHHHHHHHhcc
Q psy7093 73 ELTNDQITHLNKLCECRL-------ARMPVQYIIKE--------WNFRDLTLKMTPPVFI--PRSETEELIDIITDKLES 135 (322)
Q Consensus 73 ~l~~~~~~~~~~~~~rr~-------~~~p~~yi~g~--------~~f~~~~~~v~~~~~i--prp~te~lv~~i~~~~~~ 135 (322)
.++..+.+.+.++.+++. +++|.+|+.|. .+|+|.+|.+.++.|+ ++..++.+++.+++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~ 295 (443)
T PRK13168 216 PLSEADRAKLRAFAEQHGLQLYLQPKGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP 295 (443)
T ss_pred CCChHHHHHHHHHhhcccEEEEEECCCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC
Confidence 444455566656555442 47899999886 2588999999999997 456688999999988764
Q ss_pred CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCC
Q psy7093 136 SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLE 214 (322)
Q Consensus 136 ~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~ 214 (322)
.. +.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|++|++.+++. +++++++|+ .+.+.. .+..
T Consensus 296 ~~--~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~-----~~~l~~~~~~~ 365 (443)
T PRK13168 296 QP--GDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANL-----EEDFTDQPWAL 365 (443)
T ss_pred CC--CCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeCh-----HHhhhhhhhhc
Confidence 42 379999999999999999988 479999999999999999999998876 499999998 443321 1224
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHc
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~ 294 (322)
++||+|++||||.... .+++...+ ++|++++++.+++.....--..|.+.
T Consensus 366 ~~fD~Vi~dPPr~g~~-----------------------------~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~ 415 (443)
T PRK13168 366 GGFDKVLLDPPRAGAA-----------------------------EVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEA 415 (443)
T ss_pred CCCCEEEECcCCcChH-----------------------------HHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhC
Confidence 5799999999996421 23333333 68999999999875544333444455
Q ss_pred CC
Q psy7093 295 GH 296 (322)
Q Consensus 295 ~~ 296 (322)
|+
T Consensus 416 gY 417 (443)
T PRK13168 416 GY 417 (443)
T ss_pred Cc
Confidence 53
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=154.83 Aligned_cols=137 Identities=22% Similarity=0.442 Sum_probs=107.1
Q ss_pred CeEEEeCCCCcccC---chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPR---SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 106 ~~~~~v~~~~~ipr---p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
++.+...|++|.+. +.|+.+++ .+.... ..+|||+|||+|.+++.+++..|..+|+++|+|+.|++.|++|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~----~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n 239 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLS----TLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT 239 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHH----hccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 67888899999842 23444444 333321 2689999999999999999998889999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++. .+++.+|+ +.. ..++||+|||||||+.... ...+..+.++
T Consensus 240 l~~n~l~--~~~~~~D~-----~~~-----~~~~fDlIvsNPPFH~g~~---------------------~~~~~~~~~i 286 (342)
T PRK09489 240 LAANGLE--GEVFASNV-----FSD-----IKGRFDMIISNPPFHDGIQ---------------------TSLDAAQTLI 286 (342)
T ss_pred HHHcCCC--CEEEEccc-----ccc-----cCCCccEEEECCCccCCcc---------------------ccHHHHHHHH
Confidence 9998875 56778887 432 2468999999999985322 1234567999
Q ss_pred HHHhccCccCcEEEEEEcC
Q psy7093 263 VFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~ 281 (322)
..+.++|+|||.+++....
T Consensus 287 ~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 287 RGAVRHLNSGGELRIVANA 305 (342)
T ss_pred HHHHHhcCcCCEEEEEEeC
Confidence 9999999999999986643
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-18 Score=164.81 Aligned_cols=159 Identities=17% Similarity=0.269 Sum_probs=126.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHcCCCcee----EecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeE
Q psy7093 68 VEKNTELTNDQITHLNKLCECRLARMPVQY----IIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRM 143 (322)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~rr~~~~p~~y----i~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~i 143 (322)
.+...+++.++.+.+..++++ ++| |+|+..|+|..|.+.+++. +|+.+++.+. + . ++.+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~--~--~~~~v 270 (475)
T PLN02336 207 CWLWQKVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L--K--PGQKV 270 (475)
T ss_pred EEEEEeecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C--C--CCCEE
Confidence 466678888888899998888 899 9999999999999999987 6777776653 2 2 23799
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
||+|||+|+++..+++.+ +.+|+|+|+|+.+++.|++|.. +...++++.++|+ ... + ++.++||+|+|+
T Consensus 271 LDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~-----~~~-~--~~~~~fD~I~s~ 339 (475)
T PLN02336 271 LDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADC-----TKK-T--YPDNSFDVIYSR 339 (475)
T ss_pred EEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCc-----ccC-C--CCCCCEEEEEEC
Confidence 999999999999999875 6799999999999999999875 3345699999998 332 1 245689999996
Q ss_pred CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 224 PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
-.+....+ ...+++.+.++|+|||.+++..
T Consensus 340 ~~l~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 340 DTILHIQD--------------------------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CcccccCC--------------------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 54433221 3478999999999999998863
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=144.10 Aligned_cols=133 Identities=16% Similarity=0.291 Sum_probs=106.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.++...+..+|+++|+|+.+++.|++|. .+++++++|+ .+.. ...+||+|
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~-----~e~~----~~~kFDlI 130 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDV-----FEFE----SNEKFDVV 130 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECch-----hhhc----ccCCCcEE
Confidence 6899999999999999988876789999999999999999874 2488999998 4332 24689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH--HHHHHHHhccCccCcEEEEEEcC-------CCHHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII--KPICVFGSNYLKPNGSIFLETNH-------DHLDKIKEWL 291 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~--~~~l~~~~~~Lk~gG~l~~e~~~-------~~~~~~~~~l 291 (322)
|+||||...... ..+...+..||+.|.+.+ .+++.....+|+|+|.+++.... -.+.+.++++
T Consensus 131 IsNPPF~~l~~~--------d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l 202 (279)
T PHA03411 131 ISNPPFGKINTT--------DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWS 202 (279)
T ss_pred EEcCCccccCch--------hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHH
Confidence 999999874421 123336777899999884 89999999999999987775432 3378889999
Q ss_pred HHcCC
Q psy7093 292 GICGH 296 (322)
Q Consensus 292 ~~~~~ 296 (322)
+.+|+
T Consensus 203 ~~~g~ 207 (279)
T PHA03411 203 KQTGL 207 (279)
T ss_pred HhcCc
Confidence 99874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-16 Score=133.99 Aligned_cols=137 Identities=21% Similarity=0.334 Sum_probs=107.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.+++.++...++.+|+|+|.|+.+++.+++|++.+++.+ ++++++|+ .+ +. ..++||+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~-----~~-~~---~~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRA-----ED-FQ---HEEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecch-----hh-cc---ccCCccE
Confidence 379999999999999999988788899999999999999999999988764 99999998 33 21 3468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMK 299 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~ 299 (322)
|++|. +. . +..+++.+.++|+|||.+++.++......+.++.++... +|
T Consensus 113 I~s~~-~~---~--------------------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~-~~ 161 (181)
T TIGR00138 113 ITSRA-LA---S--------------------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQV-LG 161 (181)
T ss_pred EEehh-hh---C--------------------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhh-cC
Confidence 99974 11 0 346778889999999999999999998888888876432 35
Q ss_pred eeeEEEecCCCCCCeEEEE
Q psy7093 300 LKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 300 ~~~v~~~~D~~g~~R~~~~ 318 (322)
|..+++. -..+-+|-++.
T Consensus 162 ~~~~~~~-~~~~~~~~~~~ 179 (181)
T TIGR00138 162 VEPLEVP-PLTGPDRHLVI 179 (181)
T ss_pred ceEeecc-ccCCCceEEEE
Confidence 6666543 34444665543
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=140.25 Aligned_cols=146 Identities=19% Similarity=0.355 Sum_probs=107.8
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.|..+...++.-+ ||.+..+.+.+.+.+......+.++||++||||.+++.++++ +..+|+.||.++.++...++|+
T Consensus 8 ~kgr~l~~p~~~~~-RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~ 85 (183)
T PF03602_consen 8 YKGRKLKTPKGDNT-RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNL 85 (183)
T ss_dssp TTT-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHH
T ss_pred cCCCEecCCCCCCc-CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHH
Confidence 67899988887666 999999999999998764113489999999999999999888 5679999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..+..+++++++.|+ +..+... ....+||+|+.+|||..... +..++
T Consensus 86 ~~l~~~~~~~v~~~d~-----~~~l~~~~~~~~~fDiIflDPPY~~~~~--------------------------~~~~l 134 (183)
T PF03602_consen 86 EKLGLEDKIRVIKGDA-----FKFLLKLAKKGEKFDIIFLDPPYAKGLY--------------------------YEELL 134 (183)
T ss_dssp HHHT-GGGEEEEESSH-----HHHHHHHHHCTS-EEEEEE--STTSCHH--------------------------HHHHH
T ss_pred HHhCCCcceeeeccCH-----HHHHHhhcccCCCceEEEECCCcccchH--------------------------HHHHH
Confidence 9999888899999997 5544321 13578999999999975320 24555
Q ss_pred HHHh--ccCccCcEEEEEEcCC
Q psy7093 263 VFGS--NYLKPNGSIFLETNHD 282 (322)
Q Consensus 263 ~~~~--~~Lk~gG~l~~e~~~~ 282 (322)
+... .+|+++|++++|+...
T Consensus 135 ~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 135 ELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHCCCCCCCEEEEEEecCC
Confidence 5554 8999999999999765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=131.11 Aligned_cols=139 Identities=22% Similarity=0.323 Sum_probs=111.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.+++.++...|+.+|+++|+|+.+++.|++|++.+++++ ++++++|+ .+ +. ..++||+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~-----~~-~~---~~~~fDl 115 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRA-----EE-FG---QEEKFDV 115 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccH-----hh-CC---CCCCccE
Confidence 479999999999999999998889999999999999999999999999866 99999998 33 22 2468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMK 299 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~ 299 (322)
|++|- + . -+..+++.+.++|+|||.+++..+..+...+.++.+..|+.
T Consensus 116 V~~~~-~---~--------------------------~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~-- 163 (187)
T PRK00107 116 VTSRA-V---A--------------------------SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGK-- 163 (187)
T ss_pred EEEcc-c---c--------------------------CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCce--
Confidence 99962 0 0 04578899999999999999999999999999998887751
Q ss_pred eeeE--EEecCCCCCCeEEEEEE
Q psy7093 300 LKLV--ENYKDFNNKDRFVELKL 320 (322)
Q Consensus 300 ~~~v--~~~~D~~g~~R~~~~~~ 320 (322)
...+ -...-+.|-..+++++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 164 VEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred EeeeEEEecCCCCCcEEEEEEec
Confidence 2221 22344566666777665
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=122.99 Aligned_cols=110 Identities=21% Similarity=0.430 Sum_probs=87.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.+++.+++..++.+|+|+|+|+.+++.|++++...+...+++++++|+ ..... ..++||+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-----~~~~~---~~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-----EFDPD---FLEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-----HGGTT---TSSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-----ccCcc---cCCCCCE
Confidence 479999999999999999997789999999999999999999997778788999999998 12111 2457999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++. +.... +. +++..+++++.+.+.|+|||+++++.
T Consensus 74 v~~~~-~~~~~----~~-----------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSG-FTLHF----LL-----------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECS-GSGGG----CC-----------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC-Ccccc----cc-----------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99975 31100 00 11224688999999999999999864
|
... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=137.21 Aligned_cols=156 Identities=19% Similarity=0.328 Sum_probs=117.5
Q ss_pred CeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 106 ~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
...+.++||.-+ ..|.|..-++++-+.... +.++||+|||||.+++++++. +..+|+|+|++|.|++.|++|
T Consensus 130 ~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~----g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eN 204 (300)
T COG2264 130 ELNIELDPGLAFGTGTHPTTSLCLEALEKLLKK----GKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAAREN 204 (300)
T ss_pred ceEEEEccccccCCCCChhHHHHHHHHHHhhcC----CCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHH
Confidence 344677777655 467787777777666653 389999999999999998886 567899999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+.++++...++....+. ... ...++||+||+|- -. +.+..+.
T Consensus 205 a~~N~v~~~~~~~~~~~-----~~~----~~~~~~DvIVANI-----------LA------------------~vl~~La 246 (300)
T COG2264 205 ARLNGVELLVQAKGFLL-----LEV----PENGPFDVIVANI-----------LA------------------EVLVELA 246 (300)
T ss_pred HHHcCCchhhhcccccc-----hhh----cccCcccEEEehh-----------hH------------------HHHHHHH
Confidence 99999874233333332 111 1346999999983 11 2366899
Q ss_pred HHHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEecC
Q psy7093 263 VFGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYKD 308 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D 308 (322)
..+.++|+|||++++. +=.+|.+.+.+.+.+.| |.-+.+..+
T Consensus 247 ~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~g----f~v~~~~~~ 289 (300)
T COG2264 247 PDIKRLLKPGGRLILSGILEDQAESVAEAYEQAG----FEVVEVLER 289 (300)
T ss_pred HHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCC----CeEeEEEec
Confidence 9999999999999884 44678888999988876 677776665
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-16 Score=143.38 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=110.8
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
|.+-.+.+...+++..... ++.+|||+|||||.+++.++.. +.+++|+|+++.++..|+.|++.+++.+ +.+.++
T Consensus 163 ~~~l~~~la~~~~~l~~~~--~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~ 237 (329)
T TIGR01177 163 PGSMDPKLARAMVNLARVT--EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRG 237 (329)
T ss_pred CCCCCHHHHHHHHHHhCCC--CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEec
Confidence 5555566666666655443 2378999999999999987765 7899999999999999999999999876 889999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ .+ ++ +..++||+|++||||....... +....++|..+++.+.+.|+|||++++
T Consensus 238 D~-----~~-l~--~~~~~~D~Iv~dPPyg~~~~~~-----------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 238 DA-----TK-LP--LSSESVDAIATDPPYGRSTTAA-----------------GDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred ch-----hc-CC--cccCCCCEEEECCCCcCccccc-----------------CCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 98 32 32 2356899999999997644321 112235688999999999999999998
Q ss_pred EEcCCCHHHHHHHHHHcC
Q psy7093 278 ETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 278 e~~~~~~~~~~~~l~~~~ 295 (322)
.+.... .+.++++..|
T Consensus 293 ~~~~~~--~~~~~~~~~g 308 (329)
T TIGR01177 293 AVPTRI--DLESLAEDAF 308 (329)
T ss_pred EEcCCC--CHHHHHhhcC
Confidence 876543 3455677765
|
This family is found exclusively in the Archaea. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=131.66 Aligned_cols=144 Identities=14% Similarity=0.195 Sum_probs=109.6
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.+..+...++... ||.+..+.+.+...+... ..+.++||+|||||.+++.++++ ...+|+++|.++.+++.+++|+
T Consensus 16 ~kg~~l~~p~~~~~-rpt~~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~ 92 (189)
T TIGR00095 16 RGGRLLKLPPGGST-RPTTRVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENL 92 (189)
T ss_pred hCCcccCCCCCCCC-CCchHHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHH
Confidence 67888887777665 888888888888877532 12378999999999999999998 3458999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCC-CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLE-QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~-~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+.+++.++++++++|+ ++.+...... ..||+|+.+|||.... +..++
T Consensus 93 ~~~~~~~~~~~~~~D~-----~~~l~~~~~~~~~~dvv~~DPPy~~~~---------------------------~~~~l 140 (189)
T TIGR00095 93 ALLKSGEQAEVVRNSA-----LRALKFLAKKPTFDNVIYLDPPFFNGA---------------------------LQALL 140 (189)
T ss_pred HHhCCcccEEEEehhH-----HHHHHHhhccCCCceEEEECcCCCCCc---------------------------HHHHH
Confidence 9999877899999998 5544221112 2489999999996421 11222
Q ss_pred HHH--hccCccCcEEEEEEcCC
Q psy7093 263 VFG--SNYLKPNGSIFLETNHD 282 (322)
Q Consensus 263 ~~~--~~~Lk~gG~l~~e~~~~ 282 (322)
+.. ..+|+++|++++|+...
T Consensus 141 ~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 141 ELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred HHHHHCCCCCCCeEEEEEecCC
Confidence 222 35899999999998754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=154.53 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=107.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|||+|||||.+++.+++. +..+|+++|+|+.+++.|++|++.+++. ++++++++|+ ++.+.. ..++||+
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~-----~~~l~~--~~~~fDl 611 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC-----LAWLKE--AREQFDL 611 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH-----HHHHHH--cCCCcCE
Confidence 78999999999999999986 4557999999999999999999999986 5899999998 654422 1458999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
||+||||...... +. .+ .++...|..++..+.++|+|||.++++++..+.....+.+.+.|+
T Consensus 612 IilDPP~f~~~~~--~~-~~------------~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~ 673 (702)
T PRK11783 612 IFIDPPTFSNSKR--ME-DS------------FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGL 673 (702)
T ss_pred EEECCCCCCCCCc--cc-hh------------hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCC
Confidence 9999999875421 00 00 123455889999999999999999999988877766777877764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-16 Score=135.14 Aligned_cols=125 Identities=14% Similarity=0.265 Sum_probs=93.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
.+|||+|||||.+++.++++. +..+|+++|+++.+++.|++|.. ++.++++|+ .... ..++|
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~-----~~~~----~~~~F 115 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADA-----LTTE----FDTLF 115 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcch-----hccc----ccCCc
Confidence 799999999999999999864 35699999999999999998852 378899998 3321 24589
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccc-cCCCChhHHHHHHHHHHhccCccCcEEEEEE----------------c
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKAL-DGGHDGLNIIKPICVFGSNYLKPNGSIFLET----------------N 280 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al-~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~----------------~ 280 (322)
|+||+||||..... +. -+..+|+.+...++..+.+++++|+. ++-. +
T Consensus 116 DlIIsNPPY~~~~~---------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~ 179 (241)
T PHA03412 116 DMAISNPPFGKIKT---------------SDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDE 179 (241)
T ss_pred cEEEECCCCCCccc---------------cccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeecc
Confidence 99999999997442 11 13457889999999999996666664 4411 1
Q ss_pred CCCHHHHHHHHHHcCC
Q psy7093 281 HDHLDKIKEWLGICGH 296 (322)
Q Consensus 281 ~~~~~~~~~~l~~~~~ 296 (322)
...+....++.++.|.
T Consensus 180 ~~~~~~~~~~~~~~~~ 195 (241)
T PHA03412 180 STTSSKCKKFLDETGL 195 (241)
T ss_pred CcccHHHHHHHHhcCe
Confidence 1224566677777653
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=126.00 Aligned_cols=150 Identities=20% Similarity=0.384 Sum_probs=116.9
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.|+.+.+.++.-+ ||.+..+-+.+.+.+......+.++||+++|||.+++..+++ ...+++.||.|..++...++|+
T Consensus 9 ~kgr~L~~p~~~~~-RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 9 YKGRKLKTPDGPGT-RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred ccCCcccCCCCCCc-CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHH
Confidence 68899998887555 999999999999998762124589999999999999999998 5779999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+++..+.+++..|+ ...++..-..++||+|+.+|||...- ...+ ...+.-
T Consensus 87 ~~l~~~~~~~~~~~da-----~~~L~~~~~~~~FDlVflDPPy~~~l----~~~~-------------------~~~~~~ 138 (187)
T COG0742 87 KALGLEGEARVLRNDA-----LRALKQLGTREPFDLVFLDPPYAKGL----LDKE-------------------LALLLL 138 (187)
T ss_pred HHhCCccceEEEeecH-----HHHHHhcCCCCcccEEEeCCCCccch----hhHH-------------------HHHHHH
Confidence 9999888899999998 54433211223599999999998211 0000 111222
Q ss_pred HHhccCccCcEEEEEEcCCC
Q psy7093 264 FGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~ 283 (322)
.-..+|+|+|.+++|++...
T Consensus 139 ~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 139 EENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred HhcCCcCCCcEEEEEeCCCc
Confidence 24578999999999998764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-15 Score=126.47 Aligned_cols=132 Identities=24% Similarity=0.371 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+...+++.+... ++.+|||+|||+|.+++.+++..|+.+|+++|+|+.+++.|++|+..+++. +++++++|+
T Consensus 17 ~~~r~~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~--- 90 (187)
T PRK08287 17 EEVRALALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEA--- 90 (187)
T ss_pred HHHHHHHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCc---
Confidence 44444555665443 237999999999999999999988899999999999999999999988875 599999987
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NH 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~ 281 (322)
...+ .++||+|+++.... .+..+++.+.+.|+|||.++++. ..
T Consensus 91 --~~~~-----~~~~D~v~~~~~~~-----------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 91 --PIEL-----PGKADAIFIGGSGG-----------------------------NLTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred --hhhc-----CcCCCEEEECCCcc-----------------------------CHHHHHHHHHHhcCCCeEEEEEEecH
Confidence 3222 35799999863210 13468888999999999998864 56
Q ss_pred CCHHHHHHHHHHcCC
Q psy7093 282 DHLDKIKEWLGICGH 296 (322)
Q Consensus 282 ~~~~~~~~~l~~~~~ 296 (322)
.+...+.++++++|+
T Consensus 135 ~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 135 ENLHSALAHLEKCGV 149 (187)
T ss_pred hhHHHHHHHHHHCCC
Confidence 667788889988874
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=131.21 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=107.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.++||+|||+|.++..+|..+|+.+|+|+|+++.+++.|++++...++. +++++++|+ .+.....++.+.+|.|
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~-----~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDA-----NELLDKFFPDGSLSKV 91 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCH-----HHHHHhhCCCCceeEE
Confidence 6899999999999999999999999999999999999999999988876 599999998 3322111234589999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-HHHHHHHHHHcCCCCc
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-LDKIKEWLGICGHHMK 299 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-~~~~~~~l~~~~~~~~ 299 (322)
++|+|-...... +.+...+ ...+++.+.++|||||.+++.+.... ...+.+.+..++ +
T Consensus 92 ~~~~pdpw~k~~---------h~~~r~~---------~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~---~ 150 (194)
T TIGR00091 92 FLNFPDPWPKKR---------HNKRRIT---------QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND---L 150 (194)
T ss_pred EEECCCcCCCCC---------ccccccC---------CHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC---C
Confidence 999763322211 1111110 34789999999999999999876553 566667777665 3
Q ss_pred eeeEEEecCCCC
Q psy7093 300 LKLVENYKDFNN 311 (322)
Q Consensus 300 ~~~v~~~~D~~g 311 (322)
|..+....|+.+
T Consensus 151 f~~~~~~~~~~~ 162 (194)
T TIGR00091 151 FENTSKSTDLNN 162 (194)
T ss_pred eEecccccccCC
Confidence 676655555544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=124.48 Aligned_cols=108 Identities=23% Similarity=0.389 Sum_probs=89.0
Q ss_pred CCeEEEEcCchhHHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLL-KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la-~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..++ ...|+.+++|+|+|+.+++.|+++++..++. +++|.++|+ .+ ++..+. ++||
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~-----~~-l~~~~~-~~~D 75 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDI-----ED-LPQELE-EKFD 75 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBT-----TC-GCGCSS-TTEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeeh-----hc-cccccC-CCee
Confidence 3799999999999999999 4567899999999999999999999999987 699999999 44 432222 7899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+|++++++....+ ...+++.+.++|++||.+++....
T Consensus 76 ~I~~~~~l~~~~~--------------------------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPD--------------------------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSH--------------------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccC--------------------------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999988744332 347899999999999999886554
|
... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-15 Score=139.28 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=107.5
Q ss_pred ecCeEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.|.+|.++++.|+ ++...+.+.+.+.+.+.... +.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|++
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~--~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~ 273 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIP--VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQ 273 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHH
Confidence 55778999999997 33444556666666554222 268999999999999999975 5799999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
|++.+++. +++++++|+ .+.+.. ...+||+|++||||... . ..+
T Consensus 274 N~~~~~~~-~~~~~~~d~-----~~~~~~--~~~~~D~vi~DPPr~G~------~----------------------~~~ 317 (374)
T TIGR02085 274 SAQMLGLD-NLSFAALDS-----AKFATA--QMSAPELVLVNPPRRGI------G----------------------KEL 317 (374)
T ss_pred HHHHcCCC-cEEEEECCH-----HHHHHh--cCCCCCEEEECCCCCCC------c----------------------HHH
Confidence 99999885 699999998 433321 12469999999998411 1 133
Q ss_pred HHHHhccCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
++.+. .++|++++++++++.....--..|
T Consensus 318 l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 318 CDYLS-QMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred HHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence 33333 378999999999876544433344
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=142.80 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=120.6
Q ss_pred CCCceeEeccee----ecCeEEEeCCCCccc--CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCE
Q psy7093 92 RMPVQYIIKEWN----FRDLTLKMTPPVFIP--RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLK 165 (322)
Q Consensus 92 ~~p~~yi~g~~~----f~~~~~~v~~~~~ip--rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~ 165 (322)
|++...+.|... +.+..|.++++.|+. +..++.+++.+.+.+.... +.+|||+|||+|.+++.+++. ..+
T Consensus 241 g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~--~~~vLDl~cG~G~~sl~la~~--~~~ 316 (431)
T TIGR00479 241 GEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQG--EELVVDAYCGVGTFTLPLAKQ--AKS 316 (431)
T ss_pred CCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCC--CCEEEEcCCCcCHHHHHHHHh--CCE
Confidence 455566666543 347899999999983 4566778888877775432 268999999999999999987 468
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 166 AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 166 v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
|+|+|+++.+++.|++|+..+++. +++++++|+ .+.++.. ....+||+|+.|||+....
T Consensus 317 V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~-----~~~l~~~~~~~~~~D~vi~dPPr~G~~-------------- 376 (431)
T TIGR00479 317 VVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTL-----ETVLPKQPWAGQIPDVLLLDPPRKGCA-------------- 376 (431)
T ss_pred EEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCH-----HHHHHHHHhcCCCCCEEEECcCCCCCC--------------
Confidence 999999999999999999998875 599999998 4332211 1235799999999974211
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
..+++.+. .++|++++++.+.+.....-.+.+.+.|+
T Consensus 377 --------------~~~l~~l~-~l~~~~ivyvsc~p~tlard~~~l~~~gy 413 (431)
T TIGR00479 377 --------------AEVLRTII-ELKPERIVYVSCNPATLARDLEFLCKEGY 413 (431)
T ss_pred --------------HHHHHHHH-hcCCCEEEEEcCCHHHHHHHHHHHHHCCe
Confidence 13444433 37899988887776555555555666553
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.8e-15 Score=133.15 Aligned_cols=161 Identities=24% Similarity=0.385 Sum_probs=116.1
Q ss_pred eEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..+.++|+.-+ -.|.|...++.+.+.... +.+|||+|||||.++++.++. +..+|+|+|+++.|++.|++|+
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~----g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKYVKP----GKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENA 204 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHHSST----TSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHhccC----CCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHH
Confidence 45778888665 457777777777666443 279999999999999998886 6678999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++.+++.+. .. ... ..++||+|++|-- . +++..++.
T Consensus 205 ~~N~~~~~~~v~--~~------~~~----~~~~~dlvvANI~-----------~------------------~vL~~l~~ 243 (295)
T PF06325_consen 205 ELNGVEDRIEVS--LS------EDL----VEGKFDLVVANIL-----------A------------------DVLLELAP 243 (295)
T ss_dssp HHTT-TTCEEES--CT------SCT----CCS-EEEEEEES------------H------------------HHHHHHHH
T ss_pred HHcCCCeeEEEE--Ee------ccc----ccccCCEEEECCC-----------H------------------HHHHHHHH
Confidence 999998877663 11 111 3479999999831 1 23567888
Q ss_pred HHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 264 FGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
...++|+|||++++. +-..+.+.+.+.+++ | |..++... .|....+.++|
T Consensus 244 ~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g----~~~~~~~~--~~~W~~l~~~K 294 (295)
T PF06325_consen 244 DIASLLKPGGYLILSGILEEQEDEVIEAYKQ-G----FELVEERE--EGEWVALVFKK 294 (295)
T ss_dssp HCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-T----EEEEEEEE--ETTEEEEEEEE
T ss_pred HHHHhhCCCCEEEEccccHHHHHHHHHHHHC-C----CEEEEEEE--ECCEEEEEEEe
Confidence 889999999999883 346778888888865 5 56554443 24444444443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=138.26 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=114.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..++.++...++.+|+++|+++.+++.+++|++++++. ++++++|+ .+. ......++||.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~-----~~~-~~~~~~~~fD~ 316 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDA-----RDP-AQWWDGQPFDR 316 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCc-----ccc-hhhcccCCCCE
Confidence 47999999999999999999877689999999999999999999998875 78899998 322 11123467999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCCh----hHHHHHHHHHHhccCccCcEEEEEEc----CCCHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG----LNIIKPICVFGSNYLKPNGSIFLETN----HDHLDKIKEWL 291 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~g----l~~~~~~l~~~~~~Lk~gG~l~~e~~----~~~~~~~~~~l 291 (322)
|++|||+.....+.. .|...+...... ....+.++..+.++|+|||.+++.++ ......+...+
T Consensus 317 Vl~D~Pcs~~G~~~~--------~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l 388 (427)
T PRK10901 317 ILLDAPCSATGVIRR--------HPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFL 388 (427)
T ss_pred EEECCCCCccccccc--------CccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHH
Confidence 999999986544322 111111111111 13467899999999999999998776 34456677777
Q ss_pred HHcCCCCceee----------EEEecCCCCCCeEEEE
Q psy7093 292 GICGHHMKLKL----------VENYKDFNNKDRFVEL 318 (322)
Q Consensus 292 ~~~~~~~~~~~----------v~~~~D~~g~~R~~~~ 318 (322)
+++.. |.. ..++.+..+.+-|.++
T Consensus 389 ~~~~~---~~~~~~~~~~~~~~~~~P~~~~~dGff~a 422 (427)
T PRK10901 389 ARHPD---AELLDTGTPQQPGRQLLPGEEDGDGFFYA 422 (427)
T ss_pred HhCCC---CEEecCCCCCCCceEECCCCCCCCCeEEE
Confidence 77642 432 2355555566666654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=130.59 Aligned_cols=110 Identities=20% Similarity=0.300 Sum_probs=92.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||||-+++.+++..+..+|+|+|+|+.||+.|++.+...+..+ ++++++|+ +.+| +++++||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA------e~LP--f~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA------ENLP--FPDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech------hhCC--CCCCccC
Confidence 3489999999999999999999888999999999999999999999888777 99999998 5565 6789999
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE-EEEEcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI-FLETNHDH 283 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l-~~e~~~~~ 283 (322)
+|.+.--.....+ +.+.++++.|+|||||.+ ++|+....
T Consensus 122 ~vt~~fglrnv~d--------------------------~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 122 AVTISFGLRNVTD--------------------------IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred EEEeeehhhcCCC--------------------------HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 9998543333222 568999999999999976 45665543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=125.21 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=113.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
+.+++.+... ++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++...++. +++++++|+ .
T Consensus 35 ~~~l~~l~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~-----~ 106 (231)
T TIGR02752 35 KDTMKRMNVQ--AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNA-----M 106 (231)
T ss_pred HHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEech-----h
Confidence 4445555433 23799999999999999999876 5679999999999999999999877764 699999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cCCC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NHDH- 283 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~~~- 283 (322)
+ ++ ++.++||+|+++.++....+ +..+++++.++|+|||.+++.. +..+
T Consensus 107 ~-~~--~~~~~fD~V~~~~~l~~~~~--------------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 107 E-LP--FDDNSFDYVTIGFGLRNVPD--------------------------YMQVLREMYRVVKPGGKVVCLETSQPTI 157 (231)
T ss_pred c-CC--CCCCCccEEEEecccccCCC--------------------------HHHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence 3 22 24578999999765433221 3478899999999999987643 2111
Q ss_pred -----------------------------------------HHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 284 -----------------------------------------LDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 284 -----------------------------------------~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.+.+.+++++.| |..+++..-..|.-.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG----f~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 158 PGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG----FKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred hHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCeeEEEEcccceEEEEEEEC
Confidence 145677888775 787877766668887777765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=141.99 Aligned_cols=129 Identities=21% Similarity=0.286 Sum_probs=97.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcC-cCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPD-LLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~-~~~~~fD 218 (322)
.+|||+|||||.++++++.. +..+|+++|+|+.+++.|++|++.+++. ++++++++|+ ++.+... ...++||
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~-----~~~l~~~~~~~~~fD 295 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV-----FKLLRTYRDRGEKFD 295 (396)
T ss_pred CeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH-----HHHHHHHHhcCCCCC
Confidence 78999999999999987764 4569999999999999999999999986 4799999999 6544221 1245899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLG 292 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~ 292 (322)
+||+||||...... ++. .+..-|..++..+.++|+|||.++...+. -..+...+++.
T Consensus 296 lVilDPP~f~~~k~--------------~l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~ 354 (396)
T PRK15128 296 VIVMDPPKFVENKS--------------QLM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIA 354 (396)
T ss_pred EEEECCCCCCCChH--------------HHH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence 99999999764320 111 22344788999999999999998875443 33444555443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=132.42 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=106.8
Q ss_pred ecCeEEEeCCCCcccC--chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPR--SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~ipr--p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+..|.+.++.|+.. ...+.+.+.+.+++.... +.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~ 213 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQ 213 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHH
Confidence 4577899999999743 345667777767665332 378999999999999999986 5799999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
|++.+++. +++++++|+ .+.... ..++||+|++|||+... .. .+
T Consensus 214 n~~~~~l~-~v~~~~~D~-----~~~~~~--~~~~~D~Vv~dPPr~G~------~~----------------------~~ 257 (315)
T PRK03522 214 SAAELGLT-NVQFQALDS-----TQFATA--QGEVPDLVLVNPPRRGI------GK----------------------EL 257 (315)
T ss_pred HHHHcCCC-ceEEEEcCH-----HHHHHh--cCCCCeEEEECCCCCCc------cH----------------------HH
Confidence 99999984 699999998 332211 23479999999995321 11 22
Q ss_pred HHHHhccCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
++. ...++|++++++.+++.....-.+.+
T Consensus 258 ~~~-l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 258 CDY-LSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred HHH-HHHcCCCeEEEEECCcccchhHHhhc
Confidence 222 23367889999988876544333334
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=140.39 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=104.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|||+|||+|..++.+++.. +..+|+++|+++.+++.+++|++++++.+ ++++++|+ .... ..+. ++||+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~-----~~~~-~~~~-~~fD~ 323 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDA-----RKVH-EKFA-EKFDK 323 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCc-----cccc-chhc-ccCCE
Confidence 789999999999999999986 56799999999999999999999999875 99999998 3321 1122 67999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCC----CHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHD----HLDKIKEWL 291 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~----~~~~~~~~l 291 (322)
|++|||+...+.+. +.|...+.....++ ...+.++..+.++|||||.+++.++.- ....+..++
T Consensus 324 Vl~D~Pcsg~G~~~--------~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 324 ILVDAPCSGLGVIR--------RKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred EEEcCCCCCCeeec--------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 99999987544332 23333333333332 235689999999999999999876543 244566677
Q ss_pred HHcC
Q psy7093 292 GICG 295 (322)
Q Consensus 292 ~~~~ 295 (322)
++++
T Consensus 396 ~~~~ 399 (444)
T PRK14902 396 EEHP 399 (444)
T ss_pred HhCC
Confidence 7654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=127.64 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=98.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.|++|+...++. ++.++++|+ .+.++..+..+.||+|
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~-----~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDA-----VEVLLDMFPDGSLDRI 115 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCH-----HHHHHHHcCccccceE
Confidence 7899999999999999999888889999999999999999999888774 599999997 3433322345789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGH 296 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~ 296 (322)
++|.|.......+.. ....+..+++.+.++|+|||.+++.+.. .....+.+.+++.|+
T Consensus 116 ~~~~~~p~~~~~~~~------------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 116 YLNFPDPWPKKRHHK------------------RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred EEECCCCCCCccccc------------------cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 998653211110000 0001357899999999999999986643 445667777777764
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-14 Score=125.25 Aligned_cols=147 Identities=20% Similarity=0.316 Sum_probs=104.7
Q ss_pred eEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..+.++|+.-+ ..+.|...++.+..... ++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+
T Consensus 88 ~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~----~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 88 INIELDPGMAFGTGTHPTTRLCLEALEKLVL----PGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENA 162 (250)
T ss_pred EEEEECCCCccCCCCCHHHHHHHHHHHhhcC----CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHH
Confidence 34566666444 24556665555554432 2379999999999999987765 4457999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++..++.+..+| .+||+|++|... +.+..+++
T Consensus 163 ~~~~~~~~~~~~~~~----------------~~fD~Vvani~~-----------------------------~~~~~l~~ 197 (250)
T PRK00517 163 ELNGVELNVYLPQGD----------------LKADVIVANILA-----------------------------NPLLELAP 197 (250)
T ss_pred HHcCCCceEEEccCC----------------CCcCEEEEcCcH-----------------------------HHHHHHHH
Confidence 988864434332221 269999998421 12457889
Q ss_pred HHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 264 FGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
.+.++|+|||.+++. +...+.+.+.+.+.++| |..+.+..
T Consensus 198 ~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G----f~~~~~~~ 238 (250)
T PRK00517 198 DLARLLKPGGRLILSGILEEQADEVLEAYEEAG----FTLDEVLE 238 (250)
T ss_pred HHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC----CEEEEEEE
Confidence 999999999999885 34566778888888876 56555544
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=130.30 Aligned_cols=168 Identities=20% Similarity=0.209 Sum_probs=118.4
Q ss_pred eeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHH
Q psy7093 96 QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175 (322)
Q Consensus 96 ~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~a 175 (322)
|+.....+|++.--.+...++.|++.++.+.+.+++...... ++.+|||+|||+|.++..+++..+..+|+++|+|+.+
T Consensus 71 ~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~-~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m 149 (340)
T PLN02490 71 QHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSD-RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
T ss_pred hhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCC-CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH
Confidence 333333344444333444455577778888887776554321 2379999999999999999998878899999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh
Q psy7093 176 CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL 255 (322)
Q Consensus 176 l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl 255 (322)
++.|+++... .+++++.+|+ . .++ +..+.||+|+++..+....+
T Consensus 150 L~~A~~k~~~----~~i~~i~gD~-----e-~lp--~~~~sFDvVIs~~~L~~~~d------------------------ 193 (340)
T PLN02490 150 LAKAKQKEPL----KECKIIEGDA-----E-DLP--FPTDYADRYVSAGSIEYWPD------------------------ 193 (340)
T ss_pred HHHHHHhhhc----cCCeEEeccH-----H-hCC--CCCCceeEEEEcChhhhCCC------------------------
Confidence 9999987642 3478899998 2 222 24578999999765543221
Q ss_pred HHHHHHHHHHhccCccCcEEEEEE-c----------------CCCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 256 NIIKPICVFGSNYLKPNGSIFLET-N----------------HDHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 256 ~~~~~~l~~~~~~Lk~gG~l~~e~-~----------------~~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
...+++++.++|+|||.+++.. . ..+.+++.+++++.| |..+++.
T Consensus 194 --~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aG----F~~V~i~ 255 (340)
T PLN02490 194 --PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAG----FKDVKLK 255 (340)
T ss_pred --HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCC----CeEEEEE
Confidence 2368999999999999987632 1 124577788888876 6777654
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=129.23 Aligned_cols=145 Identities=23% Similarity=0.309 Sum_probs=106.7
Q ss_pred CeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 106 ~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
...+.++|+..+ ..|.|....+.+..... ++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~----~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n 201 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDL----KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKN 201 (288)
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHhhcC----CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHH
Confidence 355777787665 23555444444333222 2379999999999999988765 567999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..+++.+++.+...+. ... ..++||+|++|... +.+..++
T Consensus 202 ~~~n~~~~~~~~~~~~~-----~~~-----~~~~fDlVvan~~~-----------------------------~~l~~ll 242 (288)
T TIGR00406 202 AELNQVSDRLQVKLIYL-----EQP-----IEGKADVIVANILA-----------------------------EVIKELY 242 (288)
T ss_pred HHHcCCCcceEEEeccc-----ccc-----cCCCceEEEEecCH-----------------------------HHHHHHH
Confidence 99998877777777665 211 34689999998531 1245788
Q ss_pred HHHhccCccCcEEEE-EEcCCCHHHHHHHHHHc
Q psy7093 263 VFGSNYLKPNGSIFL-ETNHDHLDKIKEWLGIC 294 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~-e~~~~~~~~~~~~l~~~ 294 (322)
..+.++|+|||++++ .+...+...+.+.+++.
T Consensus 243 ~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 243 PQFSRLVKPGGWLILSGILETQAQSVCDAYEQG 275 (288)
T ss_pred HHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence 999999999999988 35566777777777653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=123.22 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=80.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVM--HNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~--~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.|+++... .+...+++++++|+ ..++ +++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~------~~lp--~~~~s 145 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA------TDLP--FDDCY 145 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc------ccCC--CCCCC
Confidence 3799999999999999998875 457999999999999999877542 22234699999998 3333 35678
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
||+|+++--++...+ ...+++++.++|||||.+++.
T Consensus 146 fD~V~~~~~l~~~~d--------------------------~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 146 FDAITMGYGLRNVVD--------------------------RLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EeEEEEecccccCCC--------------------------HHHHHHHHHHHcCcCcEEEEE
Confidence 999999754433221 347899999999999998663
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=110.88 Aligned_cols=118 Identities=24% Similarity=0.312 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+...+++.+.... +.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++|++.+++. +++++.+|+
T Consensus 5 ~~~~~~~~~~~~~~~--~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~--- 78 (124)
T TIGR02469 5 REVRALTLSKLRLRP--GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDA--- 78 (124)
T ss_pred HHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccc---
Confidence 344455666554332 36999999999999999999988899999999999999999999988765 589999987
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
...+.. ..++||.|++..+. ..+..+++.+.+.|+|||.+++..
T Consensus 79 --~~~~~~--~~~~~D~v~~~~~~-----------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 79 --PEALED--SLPEPDRVFIGGSG-----------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --cccChh--hcCCCCEEEECCcc-----------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 322211 23589999985321 014578999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=121.67 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=101.5
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCE---------EEEEeCCHHHHHHHHHHHHHcC
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLK---------AIAIDQSKHACDLTEQNAVMHN 187 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~---------v~~vDis~~al~~A~~n~~~~~ 187 (322)
.|.|-.+.+...++....... +..++|.+||||.+.+..+....+.. ++|+|+++.+++.|+.|++..+
T Consensus 8 ~~a~L~~~lA~~ll~la~~~~--~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 8 GPAPLRPTLAAALLNLAGWRP--GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp SSTSS-HHHHHHHHHHTT--T--TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCC--CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 356666778888877766543 37899999999999999887755555 8999999999999999999999
Q ss_pred CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc
Q psy7093 188 VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267 (322)
Q Consensus 188 l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~ 267 (322)
+...+.+.+.|+ ..++ +..+.+|.||+||||...... ..+.-.+|+.+++.+.+
T Consensus 86 ~~~~i~~~~~D~------~~l~--~~~~~~d~IvtnPPyG~r~~~------------------~~~~~~ly~~~~~~~~~ 139 (179)
T PF01170_consen 86 VEDYIDFIQWDA------RELP--LPDGSVDAIVTNPPYGRRLGS------------------KKDLEKLYRQFLRELKR 139 (179)
T ss_dssp -CGGEEEEE--G------GGGG--GTTSBSCEEEEE--STTSHCH------------------HHHHHHHHHHHHHHHHC
T ss_pred cCCceEEEecch------hhcc--cccCCCCEEEECcchhhhccC------------------HHHHHHHHHHHHHHHHH
Confidence 988899999998 3333 245689999999999754321 01124679999999999
Q ss_pred cCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 268 YLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 268 ~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
.|++ ..+++-.+... +.+.+...+
T Consensus 140 ~l~~-~~v~l~~~~~~---~~~~~~~~~ 163 (179)
T PF01170_consen 140 VLKP-RAVFLTTSNRE---LEKALGLKG 163 (179)
T ss_dssp HSTT-CEEEEEESCCC---HHHHHTSTT
T ss_pred HCCC-CEEEEEECCHH---HHHHhcchh
Confidence 9999 44444454443 344455443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-14 Score=121.39 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
..++..+++.+.... +.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++|+..+++.++++++.+|.
T Consensus 58 p~~~~~~~~~l~~~~--~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~-- 133 (205)
T PRK13944 58 PHMVAMMCELIEPRP--GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG-- 133 (205)
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc--
Confidence 345566666665432 37999999999999999998764 5699999999999999999999988877799999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+.++ ..++||+|+++.+.. .+.+.+.+.|+|||.+++.++.
T Consensus 134 ---~~~~~---~~~~fD~Ii~~~~~~--------------------------------~~~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 134 ---KRGLE---KHAPFDAIIVTAAAS--------------------------------TIPSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ---ccCCc---cCCCccEEEEccCcc--------------------------------hhhHHHHHhcCcCcEEEEEEcC
Confidence 44332 246899999975421 1223466889999999987765
Q ss_pred C
Q psy7093 282 D 282 (322)
Q Consensus 282 ~ 282 (322)
.
T Consensus 176 ~ 176 (205)
T PRK13944 176 G 176 (205)
T ss_pred C
Confidence 4
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=131.60 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=105.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..+..++...+..+|+++|+++.+++.+++|+++.++..++.+..+|. ..... ....++||.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~-----~~~~~-~~~~~~fD~ 312 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG-----RGPSQ-WAENEQFDR 312 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc-----ccccc-cccccccCE
Confidence 379999999999999999998877899999999999999999999998764455567776 22110 113467999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC----CHHHHHHHHHHcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD----HLDKIKEWLGICG 295 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~----~~~~~~~~l~~~~ 295 (322)
|++|||+...+.+...+.-.....|.. -.+-....+.++..+.++|||||.+++.++.- ....+..+++++.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~----~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRD----IAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHH----HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 999999988776543221111111100 00112335789999999999999999987653 4566777887764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=113.06 Aligned_cols=135 Identities=29% Similarity=0.362 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
..+++.-..+..+...+ +.+++|+|||||.+++.++...|..+|+++|.++++++..++|+++++++ ++.++.+|+
T Consensus 18 TK~EIRal~ls~L~~~~--g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~A- 93 (187)
T COG2242 18 TKEEIRALTLSKLRPRP--GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDA- 93 (187)
T ss_pred cHHHHHHHHHHhhCCCC--CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccc-
Confidence 44566666677776654 38999999999999999998889999999999999999999999999965 599999999
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
-+.++. ..+||.|+.. |..+ +..+++.+...|+|||.+++..-
T Consensus 94 ----p~~L~~---~~~~daiFIG---------------------------Gg~~---i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 94 ----PEALPD---LPSPDAIFIG---------------------------GGGN---IEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred ----hHhhcC---CCCCCEEEEC---------------------------CCCC---HHHHHHHHHHHcCcCCeEEEEee
Confidence 444431 2268999873 2222 56899999999999999998654
Q ss_pred C-CCHHHHHHHHHHcCC
Q psy7093 281 H-DHLDKIKEWLGICGH 296 (322)
Q Consensus 281 ~-~~~~~~~~~l~~~~~ 296 (322)
. .......+.+++.|.
T Consensus 137 tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 137 TLETLAKALEALEQLGG 153 (187)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 3 345556677777763
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=118.54 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+++...++..+... ++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.|++|++.+++.+++.++.+|.
T Consensus 26 ~~~r~~~l~~l~~~--~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~-- 101 (198)
T PRK00377 26 EEIRALALSKLRLR--KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA-- 101 (198)
T ss_pred HHHHHHHHHHcCCC--CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech--
Confidence 44444444555443 33799999999999999998875 45799999999999999999999998666799999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN- 280 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~- 280 (322)
.+.++. ..++||.|+++... ..+..+++.+.+.|+|||.++++..
T Consensus 102 ---~~~l~~--~~~~~D~V~~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 102 ---PEILFT--INEKFDRIFIGGGS-----------------------------EKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred ---hhhHhh--cCCCCCEEEECCCc-----------------------------ccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 332221 23579999996411 1145789999999999999988553
Q ss_pred CCCHHHHHHHHHHcCC
Q psy7093 281 HDHLDKIKEWLGICGH 296 (322)
Q Consensus 281 ~~~~~~~~~~l~~~~~ 296 (322)
..+...+.+.+++.|+
T Consensus 148 ~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 148 LETVNNALSALENIGF 163 (198)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3455677778877764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=124.47 Aligned_cols=117 Identities=18% Similarity=0.283 Sum_probs=80.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||||.++..+++.. |..+|+|+|+|+.+++.|++++...+.. +++++++|+ +.++ +++++||
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da------~~lp--~~d~sfD 118 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDA------EDLP--FPDNSFD 118 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BT------TB----S-TT-EE
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCH------HHhc--CCCCcee
Confidence 3799999999999999999875 4679999999999999999999888765 699999998 4444 4678999
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE-EEEcCCCHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF-LETNHDHLDKIKEWL 291 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~-~e~~~~~~~~~~~~l 291 (322)
+|++---+....+ ..+.++++.++|||||.++ +|++......+..+.
T Consensus 119 ~v~~~fglrn~~d--------------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 119 AVTCSFGLRNFPD--------------------------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp EEEEES-GGG-SS--------------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred EEEHHhhHHhhCC--------------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 9998433222111 4578999999999999864 577655444454443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=131.06 Aligned_cols=138 Identities=11% Similarity=0.130 Sum_probs=103.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|+++.|+. +++++++|+ .... ..++||
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da-----~~~~----~~~~fD 320 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDA-----RSFS----PEEQPD 320 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcc-----cccc----cCCCCC
Confidence 37899999999999999988653 469999999999999999999999986 499999998 3321 345799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~ 290 (322)
+|++|||+.....+..- |...+.-....+ .....++..+.++|+|||.+++.++.-. ...+..+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~--------p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~ 392 (445)
T PRK14904 321 AILLDAPCTGTGVLGRR--------AELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAF 392 (445)
T ss_pred EEEEcCCCCCcchhhcC--------cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHH
Confidence 99999999776554321 111111111111 2356799999999999999999887543 4556777
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
++.+.
T Consensus 393 l~~~~ 397 (445)
T PRK14904 393 LQRHP 397 (445)
T ss_pred HHhCC
Confidence 87764
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=126.17 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccC---CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 124 ELIDIITDKLESS---NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 124 ~lv~~i~~~~~~~---~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
.+++.+++.+... ..++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~- 177 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA- 177 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-
Confidence 3455555555321 1234789999999999999999986 6799999999999999999998888877899999998
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.+ ++ ++.++||+|+++-......+ ...+++++.++|||||.+++.
T Consensus 178 ----~~-~~--~~~~~FD~V~s~~~~~h~~d--------------------------~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 178 ----LN-QP--FEDGQFDLVWSMESGEHMPD--------------------------KRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred ----cc-CC--CCCCCccEEEECCchhccCC--------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence 32 22 35678999999643222111 247889999999999999874
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=124.80 Aligned_cols=160 Identities=17% Similarity=0.224 Sum_probs=105.4
Q ss_pred ecCeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 104 f~~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
-.|..|.++....- --.+......++.+... +++|||++|-||.+++.++.. +..+|+.||.|..++++|+
T Consensus 90 E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~~-----gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~ 163 (286)
T PF10672_consen 90 ENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYAK-----GKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAK 163 (286)
T ss_dssp ETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHCT-----TCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHH
T ss_pred ECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHcC-----CCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence 35777777642110 01255555555555432 279999999999999998876 4458999999999999999
Q ss_pred HHHHHcCCC-CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH
Q psy7093 181 QNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259 (322)
Q Consensus 181 ~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~ 259 (322)
+|+..++++ +++++++.|+ ++.+......++||+||++||=...... .+ -.-|.
T Consensus 164 ~N~~lNg~~~~~~~~~~~Dv-----f~~l~~~~~~~~fD~IIlDPPsF~k~~~-----~~---------------~~~y~ 218 (286)
T PF10672_consen 164 ENAALNGLDLDRHRFIQGDV-----FKFLKRLKKGGRFDLIILDPPSFAKSKF-----DL---------------ERDYK 218 (286)
T ss_dssp HHHHHTT-CCTCEEEEES-H-----HHHHHHHHHTT-EEEEEE--SSEESSTC-----EH---------------HHHHH
T ss_pred HHHHHcCCCccceEEEecCH-----HHHHHHHhcCCCCCEEEECCCCCCCCHH-----HH---------------HHHHH
Confidence 999999986 6799999999 6655321134689999999995543221 00 12378
Q ss_pred HHHHHHhccCccCcEEEEEEcCCC--HHHHHHHHHHc
Q psy7093 260 PICVFGSNYLKPNGSIFLETNHDH--LDKIKEWLGIC 294 (322)
Q Consensus 260 ~~l~~~~~~Lk~gG~l~~e~~~~~--~~~~~~~l~~~ 294 (322)
.++..+.++|+|||.+++..+... .+.+.+.+.+.
T Consensus 219 ~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~ 255 (286)
T PF10672_consen 219 KLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEA 255 (286)
T ss_dssp HHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 999999999999999988665443 34455544443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-14 Score=122.13 Aligned_cols=142 Identities=14% Similarity=0.209 Sum_probs=93.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..+++..+ ..+|+|+|+++. .... .++++++|+.+......+...+..++||
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 36899999999999999998864 469999999981 1223 3899999993211100000112457899
Q ss_pred EEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCC
Q psy7093 219 LVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGH 296 (322)
Q Consensus 219 lIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~ 296 (322)
+|+||+ |+...... .+ +.. -......+++.+.++|+|||.+++.+- ......+...++.
T Consensus 120 ~V~S~~~~~~~g~~~----~d---~~~---------~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~--- 180 (209)
T PRK11188 120 VVMSDMAPNMSGTPA----VD---IPR---------AMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS--- 180 (209)
T ss_pred EEecCCCCccCCChH----HH---HHH---------HHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh---
Confidence 999997 54422110 00 000 011235789999999999999998543 3333444333333
Q ss_pred CCceeeEEEecCCCCCCe
Q psy7093 297 HMKLKLVENYKDFNNKDR 314 (322)
Q Consensus 297 ~~~~~~v~~~~D~~g~~R 314 (322)
.|..+++.||.+++.|
T Consensus 181 --~f~~v~~~Kp~ssr~~ 196 (209)
T PRK11188 181 --LFTKVKVRKPDSSRAR 196 (209)
T ss_pred --CceEEEEECCcccccc
Confidence 3899999999999876
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=122.88 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=100.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.++...+ ...|+++|+++.+++.+++|++++++.+ +++++.|. .. +.. ..+.||
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~-----~~-~~~--~~~~fD 142 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDG-----RV-FGA--AVPKFD 142 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCH-----HH-hhh--hccCCC
Confidence 37899999999999999998764 3689999999999999999999999864 99999997 22 211 234699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~ 290 (322)
.|++|||+.....+.. +|...+.-.++.+ .....+++.+.++|||||++++.++.-. ...+..+
T Consensus 143 ~Vl~D~Pcsg~G~~~~--------~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~ 214 (264)
T TIGR00446 143 AILLDAPCSGEGVIRK--------DPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYL 214 (264)
T ss_pred EEEEcCCCCCCccccc--------ChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHH
Confidence 9999999876544322 2222111111111 2346799999999999999999877544 3345666
Q ss_pred HHHc
Q psy7093 291 LGIC 294 (322)
Q Consensus 291 l~~~ 294 (322)
++++
T Consensus 215 l~~~ 218 (264)
T TIGR00446 215 LEKR 218 (264)
T ss_pred HHhC
Confidence 6665
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-13 Score=123.69 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=84.0
Q ss_pred CeEEEEcCchhHHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKH--FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~--~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+|||+|||+|..+..+++. .|+.+++|+|+|+.+++.|++++...+..++++++++|+ .+ + +.+.+|
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~-----~~-~----~~~~~D 127 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-----RD-I----AIENAS 127 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh-----hh-C----CCCCCC
Confidence 78999999999999998884 478999999999999999999998888777899999998 32 2 234589
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|++|..++... ++ -...+++++.+.|+|||.+++-
T Consensus 128 ~vv~~~~l~~l~------~~------------------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 128 MVVLNFTLQFLE------PS------------------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred EEehhhHHHhCC------HH------------------HHHHHHHHHHHhcCCCCEEEEE
Confidence 999986543221 11 1347899999999999998773
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=129.46 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=98.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCcC-CCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLL-EQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~-~~~fD 218 (322)
++|||++|-||.+++.+|.. +..+|++||+|..++++|++|++.+++. .++.++++|+ ++.+..... ..+||
T Consensus 219 krvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv-----f~~l~~~~~~g~~fD 292 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV-----FKWLRKAERRGEKFD 292 (393)
T ss_pred CeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH-----HHHHHHHHhcCCccc
Confidence 89999999999999999987 3449999999999999999999999984 5689999999 877654222 34899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
+||.+||=...+.... .++...|..++..+.++|+|||.+++..+...
T Consensus 293 lIilDPPsF~r~k~~~-----------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 293 LIILDPPSFARSKKQE-----------------FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred EEEECCcccccCcccc-----------------hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999554433211 13456689999999999999999999877654
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=131.53 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=108.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|+++.++.+ +++.++|+ .. ++. ...++||
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da-----~~-l~~-~~~~~fD 309 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADA-----ER-LTE-YVQDTFD 309 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECch-----hh-hhh-hhhccCC
Confidence 3789999999999999999886 35799999999999999999999999864 89999998 22 211 1246799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh-HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL-NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEWLGI 293 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl-~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~l~~ 293 (322)
.|++|||+...+.+.. .++++.+.+...+ .++ ...++++..+.++|+|||.+++.++.-+ .+.+..++++
T Consensus 310 ~Vl~DaPCsg~G~~~~-~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 310 RILVDAPCTSLGTARN-HPEVLRRVNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred EEEECCCCCCCccccC-ChHHHHhCCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 9999999987765432 4454444332211 122 2468899999999999999999987654 4556666666
Q ss_pred cC
Q psy7093 294 CG 295 (322)
Q Consensus 294 ~~ 295 (322)
+.
T Consensus 385 ~~ 386 (431)
T PRK14903 385 QK 386 (431)
T ss_pred CC
Confidence 54
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=118.30 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.++..+++.+... ++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.|++|+..+++. +++++++|.
T Consensus 64 ~~~~~~~~~l~~~--~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~--- 137 (215)
T TIGR00080 64 HMVAMMTELLELK--PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDG--- 137 (215)
T ss_pred HHHHHHHHHhCCC--CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCc---
Confidence 4455666666544 337999999999999999998854 467999999999999999999999874 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+... ...+||+|+++++.. .+...+.+.|+|||++++.++.
T Consensus 138 --~~~~~---~~~~fD~Ii~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 138 --TQGWE---PLAPYDRIYVTAAGP--------------------------------KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred --ccCCc---ccCCCCEEEEcCCcc--------------------------------cccHHHHHhcCcCcEEEEEEcC
Confidence 44322 245899999986531 1223456789999999987765
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=127.17 Aligned_cols=135 Identities=15% Similarity=0.235 Sum_probs=101.8
Q ss_pred eEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 107 ~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
..|.+.++.|+ .+..++.+++++.+.+... +.++||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+.
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHH
Confidence 67888888887 3445788888888877532 147999999999999999987 4589999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCc-------------CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDL-------------LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~-------------~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
.+++. +++++++|+ .+.+.... ...+||+|+.|||+.- +
T Consensus 250 ~~~~~-~v~~~~~d~-----~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G------~---------------- 301 (362)
T PRK05031 250 ANGID-NVQIIRMSA-----EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG------L---------------- 301 (362)
T ss_pred HhCCC-cEEEEECCH-----HHHHHHHhhcccccccccccccCCCCCEEEECCCCCC------C----------------
Confidence 99886 599999998 44332100 0125899999999731 1
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
...+++.+.+ +++++++++++..
T Consensus 302 ------~~~~l~~l~~---~~~ivyvSC~p~t 324 (362)
T PRK05031 302 ------DDETLKLVQA---YERILYISCNPET 324 (362)
T ss_pred ------cHHHHHHHHc---cCCEEEEEeCHHH
Confidence 1234444433 6889999998744
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=121.88 Aligned_cols=104 Identities=24% Similarity=0.318 Sum_probs=84.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++++...++.++++++++|+ .+ +.. ...++||+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~-----~~-l~~-~~~~~fD~ 115 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA-----QD-IAQ-HLETPVDL 115 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH-----HH-Hhh-hcCCCCCE
Confidence 379999999999999999987 6899999999999999999999888877899999998 32 211 23568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+++..+....+ ...+++.+.++|||||.+++.
T Consensus 116 V~~~~vl~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 116 ILFHAVLEWVAD--------------------------PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred EEehhHHHhhCC--------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 999755432211 236888999999999999764
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-13 Score=127.41 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=114.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++|++++|+.+ ++++++|+ ... ... ...++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~-----~~~-~~~~~~~~~~ 325 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADS-----RNL-LELKPQWRGY 325 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCCh-----hhc-cccccccccc
Confidence 37999999999999999998754 4699999999999999999999999875 99999998 222 110 12468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIK 288 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~ 288 (322)
||.|++|||....+.+...+...... ....+ .....++..+.++|||||.+++.++.-. ...+.
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~--------~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~ 397 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQ--------TPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE 397 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhC--------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 99999999986544433222111110 00111 1246899999999999999998776433 45577
Q ss_pred HHHHHcCCCCceeeEE----EecCCCCCCeEEEEE
Q psy7093 289 EWLGICGHHMKLKLVE----NYKDFNNKDRFVELK 319 (322)
Q Consensus 289 ~~l~~~~~~~~~~~v~----~~~D~~g~~R~~~~~ 319 (322)
.+++++. +|.... ++.+..|.|-|.+++
T Consensus 398 ~~l~~~~---~~~~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 398 QFLARHP---DWKLEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred HHHHhCC---CcEecCCCCccCCCCCCCCcEEEEE
Confidence 7787775 355332 456666777777653
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-13 Score=122.77 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=84.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++.+... ++.+|||+|||+|.++..++..+|+.+|+|+|+|+.+++.|+++ +++++++|+ .+
T Consensus 20 ~ll~~l~~~--~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~-----~~- 83 (255)
T PRK14103 20 DLLARVGAE--RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDV-----RD- 83 (255)
T ss_pred HHHHhCCCC--CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcCh-----hh-
Confidence 444555433 23799999999999999999998889999999999999999752 377889998 32
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+. ..++||+|++|..++...+ ...+++++.+.|||||.+++.+
T Consensus 84 ~~---~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 84 WK---PKPDTDVVVSNAALQWVPE--------------------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CC---CCCCceEEEEehhhhhCCC--------------------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 22 3468999999987654332 2478889999999999999865
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=118.80 Aligned_cols=208 Identities=17% Similarity=0.218 Sum_probs=105.2
Q ss_pred ecCeEE-EeCCCCcccC-chhHHHHHHHHHHhccCCC---CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHH
Q psy7093 104 FRDLTL-KMTPPVFIPR-SETEELIDIITDKLESSNH---TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178 (322)
Q Consensus 104 f~~~~~-~v~~~~~ipr-p~te~lv~~i~~~~~~~~~---~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~ 178 (322)
++|+.+ .+.++.+.|. |..-.++.++.+.+..... ...++||||||..||--.|+....+++++|+|+++.+++.
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~ 141 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLES 141 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHH
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHH
Confidence 467776 7888999876 6666677777777654321 1358999999999996555555458999999999999999
Q ss_pred HHHHHHHc-CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhh-----c-----cccccc
Q psy7093 179 TEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIA-----L-----YEDIKA 247 (322)
Q Consensus 179 A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~-----~-----~ep~~a 247 (322)
|++|+..+ ++.++|+++...- +..-+..+. .....||+.+|||||+.+.+...-..+.+ . -.|..+
T Consensus 142 A~~nv~~N~~L~~~I~l~~~~~-~~~i~~~i~--~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~ 218 (299)
T PF05971_consen 142 ARENVERNPNLESRIELRKQKN-PDNIFDGII--QPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLN 218 (299)
T ss_dssp HHHHHHHT-T-TTTEEEEE--S-T-SSTTTST--T--S-EEEEEE-----SS----------------------------
T ss_pred HHHHHHhccccccceEEEEcCC-ccccchhhh--cccceeeEEecCCccccChhhhcccccccccccccccccccCcccc
Confidence 99999999 9999999986642 000023222 13458999999999998775332111111 1 134444
Q ss_pred ccCCCC-------hhHHHHHHHHHHhccCccCcEEEEE--Ec-CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEE
Q psy7093 248 LDGGHD-------GLNIIKPICVFGSNYLKPNGSIFLE--TN-HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVE 317 (322)
Q Consensus 248 l~~g~~-------gl~~~~~~l~~~~~~Lk~gG~l~~e--~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~ 317 (322)
..|... -+.|..++++++..+-. -+.++. +| ...-..+.+.|++.+. ..+..+++.+- ...-|+|.
T Consensus 219 ~~G~~~El~~~GGEv~FV~rMI~ES~~~~~--~v~WfTsmvgKkssL~~l~~~L~~~~~-~~~~~~e~~QG-~t~rw~lA 294 (299)
T PF05971_consen 219 FTGQSNELWCEGGEVAFVKRMIKESLQLKD--QVRWFTSMVGKKSSLKPLKKELKKLGA-TNYKVTEMCQG-QTKRWILA 294 (299)
T ss_dssp ----TTTTHHHHTHHHHHHHHHHHHHHHGG--GEEEEEEEESSGGGHHHHHHHHHHTT--SEEEEEEEEET-TEEEEEEE
T ss_pred CCCCcceEEcCCccHHHHHHHHHHHHHhCC--CcEEEeecccCcccHHHHHHHHHhcCC-ceEEEEEccCC-ceEEEEEE
Confidence 333211 16788999999886533 345553 44 3456778888888764 23445555543 23344444
Q ss_pred E
Q psy7093 318 L 318 (322)
Q Consensus 318 ~ 318 (322)
|
T Consensus 295 W 295 (299)
T PF05971_consen 295 W 295 (299)
T ss_dssp E
T ss_pred E
Confidence 4
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=120.77 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
++..++..+.+..+. .+|||+|||+|+.+++++...+ +.+|+++|+++++++.|++|++..++.++++++.+|+
T Consensus 55 ~~g~~L~~l~~~~~~-----~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 55 DEGLFLSMLVKIMNA-----KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHHHHhCC-----CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 455555555554432 7899999999999999998765 6799999999999999999999999988999999999
Q ss_pred CCcccccccCcC---cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 200 DSKGQVKNLQPD---LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 200 ~~~~~~~~l~~~---~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
.+.++.. ...++||+|+.|.+- ..|..+++.+.++|+|||.++
T Consensus 130 -----~~~L~~l~~~~~~~~fD~VfiDa~k-----------------------------~~y~~~~~~~~~ll~~GG~ii 175 (234)
T PLN02781 130 -----LSALDQLLNNDPKPEFDFAFVDADK-----------------------------PNYVHFHEQLLKLVKVGGIIA 175 (234)
T ss_pred -----HHHHHHHHhCCCCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 5543321 124689999997431 125678889999999999988
Q ss_pred EE
Q psy7093 277 LE 278 (322)
Q Consensus 277 ~e 278 (322)
+.
T Consensus 176 ~d 177 (234)
T PLN02781 176 FD 177 (234)
T ss_pred EE
Confidence 74
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=115.59 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=79.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++. +.+...|+ .. .+ ..++||+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~-----~~-~~---~~~~fD~I 98 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDI-----NA-AA---LNEDYDFI 98 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccc-----hh-cc---ccCCCCEE
Confidence 79999999999999999986 679999999999999999998877764 77777776 21 11 13579999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+++.+++.... + ....+++.+.++|+|||++++.
T Consensus 99 ~~~~~~~~~~~------~------------------~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQA------G------------------RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCH------H------------------HHHHHHHHHHHHhCCCcEEEEE
Confidence 99988754321 1 1357899999999999985553
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-13 Score=120.41 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=86.8
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.++..+... ++.+|||+|||+|.++..++..+|+.+|+|+|+|+.+++.|+++. .++.++.+|+ ..
T Consensus 21 ~~ll~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~-----~~ 87 (258)
T PRK01683 21 RDLLARVPLE--NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADI-----AS 87 (258)
T ss_pred HHHHhhCCCc--CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECch-----hc
Confidence 3444444333 237999999999999999999988899999999999999998764 2478889998 32
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.. ...+||+|++|..+....+ ...+++.+.+.|+|||.+++.+..
T Consensus 88 ~~----~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 88 WQ----PPQALDLIFANASLQWLPD--------------------------HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred cC----CCCCccEEEEccChhhCCC--------------------------HHHHHHHHHHhcCCCcEEEEECCC
Confidence 21 3458999999987654332 347889999999999999997643
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-12 Score=112.48 Aligned_cols=142 Identities=24% Similarity=0.287 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+...+++.+... ++.+|||+|||+|.+++.+++..++.+|+++|+|+.+++.|++|++.+++. +++++.+|+
T Consensus 26 ~~v~~~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~--- 99 (196)
T PRK07402 26 REVRLLLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSA--- 99 (196)
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECch---
Confidence 33444455665533 237999999999999999998778889999999999999999999988875 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
.+.+.. ....+|.++.+.. . -+..+++.+.++|+|||.+++.....
T Consensus 100 --~~~~~~--~~~~~d~v~~~~~----~--------------------------~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 100 --PECLAQ--LAPAPDRVCIEGG----R--------------------------PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred --HHHHhh--CCCCCCEEEEECC----c--------------------------CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 332211 1123566555310 0 03578899999999999999987654
Q ss_pred C-HHHHHHHHHHcCCCCceeeEEE
Q psy7093 283 H-LDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 283 ~-~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
. ...+.+.+++.+. .++..+++
T Consensus 146 ~~~~~~~~~~~~~~~-~~~~~~~~ 168 (196)
T PRK07402 146 EGLYAISEGLAQLQA-RNIEVVQA 168 (196)
T ss_pred HHHHHHHHHHHhcCC-CCceEEEE
Confidence 3 3445566665432 13455554
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=123.24 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=99.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+||+|||+|.+++.+|...|+..++|+|+++.+++.|.+++...++.+ +.++++|+ ...+ ..++.+.+|.|
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA-----~~ll-~~~~~~s~D~I 196 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDA-----RLLL-ELLPSNSVEKI 196 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCH-----HHhh-hhCCCCceeEE
Confidence 68999999999999999999999999999999999999999999988865 99999998 3221 23457899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHHHHHc
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEWLGIC 294 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~~ 294 (322)
++|.|..+....+ . .+ +...++..+.++|+|||.+.+-+.+. ....+.+.+.+.
T Consensus 197 ~lnFPdPW~KkrH---R---------Rl--------v~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPWDKKPH---R---------RV--------ISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCccccch---h---------hc--------cHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 9998754433211 0 01 14589999999999999998877643 344555555554
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-13 Score=120.84 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=104.9
Q ss_pred cccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 116 ~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
+-|-+-...+...+.+...-.. +..|||..||||.+.+.+... +++++|+|++..+++-|+.|++.+++.+ ..+.
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v~~--G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~ 250 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARVKR--GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIED-YPVL 250 (347)
T ss_pred cCcCCcCHHHHHHHHHHhcccc--CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCc-eeEE
Confidence 3344444556666766665553 379999999999999998877 8999999999999999999999999765 5555
Q ss_pred Ec-cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 196 HA-EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 196 ~~-D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
.. |+ ..++ +....+|.|+++|||..+....... =.++|+.+++.+.+.|++||+
T Consensus 251 ~~~Da------~~lp--l~~~~vdaIatDPPYGrst~~~~~~-----------------l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 251 KVLDA------TNLP--LRDNSVDAIATDPPYGRSTKIKGEG-----------------LDELYEEALESASEVLKPGGR 305 (347)
T ss_pred Eeccc------ccCC--CCCCccceEEecCCCCccccccccc-----------------HHHHHHHHHHHHHHHhhcCcE
Confidence 55 87 3344 4555799999999998776543211 125689999999999999999
Q ss_pred EEEEEc
Q psy7093 275 IFLETN 280 (322)
Q Consensus 275 l~~e~~ 280 (322)
++|-..
T Consensus 306 ~vf~~p 311 (347)
T COG1041 306 IVFAAP 311 (347)
T ss_pred EEEecC
Confidence 999666
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=102.47 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=74.0
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
||+|||+|..+..+++. +..+|+++|+++.+++.++++.... ++.+.++|+ ..++ +++++||+|+++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~------~~l~--~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDA------EDLP--FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBT------TSSS--S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc----CchheeehH------HhCc--cccccccccccc
Confidence 79999999999999998 8899999999999999999877543 366899998 3333 467899999996
Q ss_pred CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 224 PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
--+.... -..++++++.++|||||+++|
T Consensus 68 ~~~~~~~--------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLE--------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSS--------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeecc--------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 4433221 156899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-13 Score=114.04 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=80.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++. ++++...|+ .+. + ..++||+|
T Consensus 32 ~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~-----~~~-~---~~~~fD~I 99 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDL-----NNL-T---FDGEYDFI 99 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecCh-----hhC-C---cCCCcCEE
Confidence 78999999999999999987 679999999999999999999888775 488888998 322 1 23579999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+++..++.. +++ ....+++.+.++|+|||++++
T Consensus 100 ~~~~~~~~~------~~~------------------~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 100 LSTVVLMFL------EAK------------------TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EEecchhhC------CHH------------------HHHHHHHHHHHHcCCCcEEEE
Confidence 998654221 111 145899999999999999655
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=119.15 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=84.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||.|.++..+|+. +++|+|+|+++++++.|+..+...++. +.+.+..+ +.+.. ..++||+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~------edl~~--~~~~FDv 127 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATV------EDLAS--AGGQFDV 127 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhH------HHHHh--cCCCccE
Confidence 489999999999999999999 799999999999999999999888865 66777766 22221 2379999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
|+|. ||..|=|. .+.+++.+.+++||||.+++.+-++.
T Consensus 128 V~cm--------------EVlEHv~d------------p~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 128 VTCM--------------EVLEHVPD------------PESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred EEEh--------------hHHHccCC------------HHHHHHHHHHHcCCCcEEEEeccccC
Confidence 9994 33333222 34799999999999999999876554
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-12 Score=116.26 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=115.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHc-CCCceeEecceeecCeEEEeCCCCcccCch-hHHHHHHHHHHhccCCCCCCeEEEEc
Q psy7093 70 KNTELTNDQITHLNKLCECRLA-RMPVQYIIKEWNFRDLTLKMTPPVFIPRSE-TEELIDIITDKLESSNHTPTRMIEIG 147 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~-~~p~~yi~g~~~f~~~~~~v~~~~~iprp~-te~lv~~i~~~~~~~~~~~~~iLDlg 147 (322)
...++++++.+.++..+++... +.| . |.. .++.+|... .+...+.++..+... ++.+|||+|
T Consensus 66 ~~~~~~~~~~~~l~~~l~~l~p~~~~------~-------~~l-~~~~~~~e~~s~~~~~~~l~~l~~~--~g~~VLDvG 129 (314)
T TIGR00452 66 KSNPLSAGQIKRILEEIMALMPWRKG------P-------FEL-SGIKIDSEWRSDIKWDRVLPHLSPL--KGRTILDVG 129 (314)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCC------C-------ccc-ccccCCHHHHHHHHHHHHHHhcCCC--CCCEEEEec
Confidence 4567899999999888766431 111 1 111 122332111 222234455555433 337999999
Q ss_pred CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCC
Q psy7093 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 148 ~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~ 227 (322)
||+|.++..++... ...|+|+|.|+.++..++...+..+...++.+...++ +.++ ....||+|+|+--..
T Consensus 130 CG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i------e~lp---~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 130 CGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI------EQLH---ELYAFDTVFSMGVLY 199 (314)
T ss_pred cCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH------HHCC---CCCCcCEEEEcchhh
Confidence 99999999888773 3479999999999877654333333334688888887 3333 234799999964322
Q ss_pred CCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc----CC--------------------C
Q psy7093 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN----HD--------------------H 283 (322)
Q Consensus 228 ~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~----~~--------------------~ 283 (322)
...+ ...+++++.+.|+|||.+++++- .. .
T Consensus 200 H~~d--------------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS 253 (314)
T TIGR00452 200 HRKS--------------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPS 253 (314)
T ss_pred ccCC--------------------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCC
Confidence 2111 23688999999999999998731 10 2
Q ss_pred HHHHHHHHHHcCCCCceeeEEEe
Q psy7093 284 LDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 284 ~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
...+..++++.| |..+++.
T Consensus 254 ~~~L~~~L~~aG----F~~V~i~ 272 (314)
T TIGR00452 254 VSALKNWLEKVG----FENFRIL 272 (314)
T ss_pred HHHHHHHHHHCC----CeEEEEE
Confidence 356677888875 7877655
|
Known examples to date are restricted to the proteobacteria. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-12 Score=105.88 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=65.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..|+|+|||||.+++.++.. +..+|+|+|+++++++.+++|+... ..++.|+.+|+ .. ..+++|.+
T Consensus 47 ~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv------~~-----~~~~~dtv 112 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADV------SD-----FRGKFDTV 112 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcch------hh-----cCCccceE
Confidence 68999999999999998876 5689999999999999999999884 45699999999 22 35789999
Q ss_pred EEcCCCCCC
Q psy7093 221 VSNPPYVPS 229 (322)
Q Consensus 221 v~NPPy~~~ 229 (322)
+.||||...
T Consensus 113 imNPPFG~~ 121 (198)
T COG2263 113 IMNPPFGSQ 121 (198)
T ss_pred EECCCCccc
Confidence 999999865
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-12 Score=117.19 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.+++.. +..+|+++|+++.+++.|++|....++. +++++.+|+ . .++ +..+.||
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~-----~-~l~--~~~~~fD 148 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEI-----E-ALP--VADNSVD 148 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcch-----h-hCC--CCCCcee
Confidence 3799999999999888777764 4468999999999999999999888875 689999998 2 232 2456899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-------------------
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET------------------- 279 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~------------------- 279 (322)
+|++|..+....+ ...+++++.++|||||.+++.-
T Consensus 149 ~Vi~~~v~~~~~d--------------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~ 202 (272)
T PRK11873 149 VIISNCVINLSPD--------------------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYA 202 (272)
T ss_pred EEEEcCcccCCCC--------------------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHh
Confidence 9999864432221 2478999999999999998731
Q ss_pred ----cCCCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 280 ----NHDHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 280 ----~~~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
+..+...+.++++..| |..+++
T Consensus 203 ~~~~~~~~~~e~~~~l~~aG----f~~v~i 228 (272)
T PRK11873 203 GCVAGALQEEEYLAMLAEAG----FVDITI 228 (272)
T ss_pred ccccCCCCHHHHHHHHHHCC----CCceEE
Confidence 1124556777888776 555544
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=114.61 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=93.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
++|||+|||+|..+..+++.+|+.+|+|+|+|+.+++.|++++...++.++++++..|+ ... + ..++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~-----~~~-~---~~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS-----AKD-P---FPDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc-----ccC-C---CCCCCCEe
Confidence 36999999999999999999888899999999999999999999888888899999998 332 1 23589999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----------------CCH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----------------DHL 284 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----------------~~~ 284 (322)
+++-.+....+ ...+++.+.++|+|||.+++.... ...
T Consensus 72 ~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~ 125 (224)
T smart00828 72 FGFEVIHHIKD--------------------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTR 125 (224)
T ss_pred ehHHHHHhCCC--------------------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCH
Confidence 98532222111 347899999999999998874211 113
Q ss_pred HHHHHHHHHcC
Q psy7093 285 DKIKEWLGICG 295 (322)
Q Consensus 285 ~~~~~~l~~~~ 295 (322)
..+.+++.+.|
T Consensus 126 ~~~~~~l~~~G 136 (224)
T smart00828 126 EEWAELLARNN 136 (224)
T ss_pred HHHHHHHHHCC
Confidence 55667787776
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-12 Score=104.37 Aligned_cols=146 Identities=22% Similarity=0.320 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhc----cCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 122 TEELIDIITDKLE----SSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 122 te~lv~~i~~~~~----~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.+.+++++.+... ... ..+|||+|||.|.+...|+++--....+|+|.|+.|+++|+.-+++.++++.|+|.+.
T Consensus 48 e~riv~wl~d~~~~~rv~~~--A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQ--ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHhhhhhhhhccc--ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 4566777776655 221 1499999999999999999984445699999999999999988889999999999999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ +.+ .+..++||+|.----|-.. .|.++- ..|. ....+....++|+|||++++
T Consensus 126 DI-----~~~---~~~~~qfdlvlDKGT~DAi----sLs~d~------------~~~r--~~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 126 DI-----TDP---DFLSGQFDLVLDKGTLDAI----SLSPDG------------PVGR--LVVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred ec-----cCC---cccccceeEEeecCceeee----ecCCCC------------cccc--eeeehhhHhhccCCCcEEEE
Confidence 99 433 1245677777642111100 011110 0110 01344556788999999999
Q ss_pred EEcCCCHHHHHHHHHHcC
Q psy7093 278 ETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 278 e~~~~~~~~~~~~l~~~~ 295 (322)
--++-..+++.+.+...+
T Consensus 180 tSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 180 TSCNFTKDELVEEFENFN 197 (227)
T ss_pred EecCccHHHHHHHHhcCC
Confidence 777878888888888765
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=112.95 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
..++..+++.+... ++.+|||+|||||+++..+++..+ ..+|+++|+++++++.|++|++..+.. +++++++|.
T Consensus 62 p~~~~~~~~~l~~~--~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~-- 136 (212)
T PRK13942 62 IHMVAIMCELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG-- 136 (212)
T ss_pred HHHHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc--
Confidence 34555666666544 237999999999999999988753 469999999999999999999988875 599999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
....+ ..++||+|+++-.. . .+...+.+.|+|||.+++.++.
T Consensus 137 ---~~~~~---~~~~fD~I~~~~~~------~--------------------------~~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 137 ---TLGYE---ENAPYDRIYVTAAG------P--------------------------DIPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred ---ccCCC---cCCCcCEEEECCCc------c--------------------------cchHHHHHhhCCCcEEEEEEcC
Confidence 44332 34689999985211 0 1223345679999999998764
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=116.14 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=82.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|||+|||+|..+..+++.+ |+.+++|+|+|+.+++.|++++...+...+++++++|+ .+ + +...+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~-----~~-~----~~~~~ 123 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI-----RH-V----EIKNA 123 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh-----hh-C----CCCCC
Confidence 3689999999999999999864 68899999999999999999998776656799999998 32 2 22358
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+|+++-..+. ++++ -...+++++.+.|+|||.+++-
T Consensus 124 d~v~~~~~l~~------~~~~------------------~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 124 SMVILNFTLQF------LPPE------------------DRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CEEeeecchhh------CCHH------------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 99998654322 1111 1347899999999999998874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.3e-12 Score=110.76 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=109.1
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
..++..+... ++.+|||+|||+|.++..++...| ..+++++|+++.+++.+++++...++..++.++.+|+ .
T Consensus 41 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-----~ 113 (239)
T PRK00216 41 RKTIKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-----E 113 (239)
T ss_pred HHHHHHhCCC--CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc-----c
Confidence 3344444333 237999999999999999999876 6899999999999999999987766666799999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-EcCC--
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-TNHD-- 282 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~~~~-- 282 (322)
+. + ...+.||+|+++--.....+ ...+++.+.++|+|||.+++. +...
T Consensus 114 ~~-~--~~~~~~D~I~~~~~l~~~~~--------------------------~~~~l~~~~~~L~~gG~li~~~~~~~~~ 164 (239)
T PRK00216 114 AL-P--FPDNSFDAVTIAFGLRNVPD--------------------------IDKALREMYRVLKPGGRLVILEFSKPTN 164 (239)
T ss_pred cC-C--CCCCCccEEEEecccccCCC--------------------------HHHHHHHHHHhccCCcEEEEEEecCCCc
Confidence 32 1 23568999998532221111 347889999999999988653 2111
Q ss_pred ----------------------------------------CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 283 ----------------------------------------HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 283 ----------------------------------------~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
..+.+.+++++.| |..+++.....|.--++.+.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 165 PPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG----FERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC----CceeeeeeeecCcEEEEEEec
Confidence 1234666777775 677777776667666666554
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=120.68 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=81.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|.++++++.|+.++...+...+++++++|+ +.++ ...++||+
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da------e~l~--~~~~~FD~ 201 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA------EKLA--DEGRKFDA 201 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH------HHhh--hccCCCCE
Confidence 368999999999999999875 7899999999999999999877655555799999997 3332 23568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|++.-......+ ...+++.+.++|||||.+++.+
T Consensus 202 Vi~~~vLeHv~d--------------------------~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 202 VLSLEVIEHVAN--------------------------PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred EEEhhHHHhcCC--------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 999422211111 2478999999999999999875
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-13 Score=122.35 Aligned_cols=159 Identities=17% Similarity=0.317 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEE
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-------PKLKAIAIDQSKHACDLTEQNAVMHNVANQ-LQVF 195 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-------~~~~v~~vDis~~al~~A~~n~~~~~l~~~-i~~~ 195 (322)
.+++.+.+.+... ++.+|+|+|||+|.+.+++.... +..+++|+|+++.++.+|+.|+..++.... ..+.
T Consensus 33 ~i~~l~~~~~~~~--~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~ 110 (311)
T PF02384_consen 33 EIVDLMVKLLNPK--KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII 110 (311)
T ss_dssp HHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred HHHHHHHhhhhcc--ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence 3444444554433 23689999999999999988743 678999999999999999999887765432 4688
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
++|. +..... ....+||+|++||||....-...-.....+|... .......+. .++..+.+.|++||.+
T Consensus 111 ~~d~-----l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 111 QGDS-----LENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEY--AFIEHALSLLKPGGRA 179 (311)
T ss_dssp ES-T-----TTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHH--HHHHHHHHTEEEEEEE
T ss_pred cccc-----cccccc-ccccccccccCCCCcccccccccccccccccccc---CCCccchhh--hhHHHHHhhcccccce
Confidence 8888 443211 1246899999999998762111000000011111 222223332 4889999999999998
Q ss_pred EEEEcC------CCHHHHHHHHHHcC
Q psy7093 276 FLETNH------DHLDKIKEWLGICG 295 (322)
Q Consensus 276 ~~e~~~------~~~~~~~~~l~~~~ 295 (322)
.+.++. .....+++.+-+.+
T Consensus 180 ~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 180 AIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred eEEecchhhhccchHHHHHHHHHhhc
Confidence 887643 23456777665544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.9e-13 Score=119.95 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=84.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+++.+.-. ++.+|||+|||.|.+++.+|+++ +++|+|+.+|+...+.|++.++..|+.+++++...|.
T Consensus 51 ~~~~~~~~~l~--~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~------ 121 (273)
T PF02353_consen 51 LDLLCEKLGLK--PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY------ 121 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G------
T ss_pred HHHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec------
Confidence 34455555444 34899999999999999999997 7899999999999999999999999999999999998
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
..+ ..+||.|||= +.++++ |...+..+++.+.++|+|||.+++..
T Consensus 122 ~~~-----~~~fD~IvSi------~~~Ehv------------------g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 122 RDL-----PGKFDRIVSI------EMFEHV------------------GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GG--------S-SEEEEE------SEGGGT------------------CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ccc-----CCCCCEEEEE------echhhc------------------ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 222 2389999992 111111 22337799999999999999998864
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=117.10 Aligned_cols=115 Identities=21% Similarity=0.386 Sum_probs=93.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+.+.+.-. ++.++||+|||.|.+++.+|+++ +.+|+|+++|++..+.+++.++..|++.++++...|.
T Consensus 61 ~~~~~~kl~L~--~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~------ 131 (283)
T COG2230 61 LDLILEKLGLK--PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY------ 131 (283)
T ss_pred HHHHHHhcCCC--CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc------
Confidence 35566666655 34899999999999999999997 7999999999999999999999999998899999998
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
..+ .++||.|||= + .||- -|.+-|..+++.+.++|+|||.+++-
T Consensus 132 rd~-----~e~fDrIvSv------g----------mfEh--------vg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 132 RDF-----EEPFDRIVSV------G----------MFEH--------VGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccc-----ccccceeeeh------h----------hHHH--------hCcccHHHHHHHHHhhcCCCceEEEE
Confidence 222 3459999991 1 1221 12234789999999999999998774
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-12 Score=119.65 Aligned_cols=144 Identities=16% Similarity=0.301 Sum_probs=103.2
Q ss_pred eEEEeCCCCcc-c-CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI-P-RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 107 ~~~~v~~~~~i-p-rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
..+.++++.|. + ....+.+++.+.+.+...+ .+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+.
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~ 240 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIA 240 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHH
Confidence 67888888887 2 3345777888888775321 469999999999999999884 589999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcC-----c---C-----CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPD-----L---L-----EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~-----~---~-----~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
.+++.+ ++++++|+ .+.+... + . ..+||+|+.|||.. + +.
T Consensus 241 ~~~~~~-v~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~--G----~~--------------- 293 (353)
T TIGR02143 241 ANNIDN-VQIIRMSA-----EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA--G----LD--------------- 293 (353)
T ss_pred HcCCCc-EEEEEcCH-----HHHHHHHhhccccccccccccccCCCCEEEECCCCC--C----Cc---------------
Confidence 999864 99999998 4333210 0 0 12489999999942 1 11
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHH
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~ 292 (322)
..+++.+.+ |++++++++++.....--..|.
T Consensus 294 -------~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 294 -------PDTCKLVQA---YERILYISCNPETLKANLEQLS 324 (353)
T ss_pred -------HHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh
Confidence 134443333 7899999998765433333343
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-13 Score=111.85 Aligned_cols=112 Identities=23% Similarity=0.253 Sum_probs=82.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+++.+.... +.+|||+|||+|.++..+++. ..+++++|+++.+++.+++|+.. .++++++++|+ .+
T Consensus 3 ~~i~~~~~~~~--~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~-----~~ 70 (169)
T smart00650 3 DKIVRAANLRP--GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDA-----LK 70 (169)
T ss_pred HHHHHhcCCCC--cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECch-----hc
Confidence 44555554432 268999999999999999988 57999999999999999998854 24699999998 43
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.. +...+||.|++||||.... .++.++++. ..+.++|+++++..
T Consensus 71 ~~---~~~~~~d~vi~n~Py~~~~-------------------------~~i~~~l~~--~~~~~~~~l~~q~e 114 (169)
T smart00650 71 FD---LPKLQPYKVVGNLPYNIST-------------------------PILFKLLEE--PPAFRDAVLMVQKE 114 (169)
T ss_pred CC---ccccCCCEEEECCCcccHH-------------------------HHHHHHHhc--CCCcceEEEEEEHH
Confidence 32 1334699999999997432 123445443 22558899988763
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-12 Score=113.04 Aligned_cols=115 Identities=14% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++..|..+++++|+++.+++.|++++...+..++++++.+|. .+.+.. ..++||+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da-----~~~l~~--~~~~yD~ 139 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADG-----AEYIAV--HRHSTDV 139 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH-----HHHHHh--CCCCCCE
Confidence 478999999999999999999999999999999999999999876554456799999998 444432 2358999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
|++|. |.... .+. .+ ....+++.+.+.|+|||++++.+....
T Consensus 140 I~~D~-~~~~~----~~~---------~l--------~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 140 ILVDG-FDGEG----IID---------AL--------CTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred EEEeC-CCCCC----Ccc---------cc--------CcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 99984 22211 000 00 135899999999999999998764433
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-12 Score=114.26 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=101.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V--ANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l--~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
+.+||++|||+|.++..+++..+..+|+++|+++.+++.|++++...+ . ..+++++.+|. ...+.. ..+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da-----~~~l~~--~~~ 149 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG-----IKFVAE--TEN 149 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch-----HHHHhh--CCC
Confidence 479999999999999999887556799999999999999999886532 2 45799999998 554432 356
Q ss_pred CeeEEEEcC--CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHH
Q psy7093 216 KFDLVVSNP--PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWL 291 (322)
Q Consensus 216 ~fDlIv~NP--Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l 291 (322)
+||+|++|. |+.+... | +.+.+++.+.+.|+|||++++..+. .+...+..+.
T Consensus 150 ~yDvIi~D~~dp~~~~~~----------------l--------~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~ 205 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEG----------------L--------FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMH 205 (283)
T ss_pred cccEEEECCCCCCCchhh----------------h--------hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHH
Confidence 899999974 4422110 0 1357888899999999999987653 2344444444
Q ss_pred HHcCCCCceeeEEEecC----C-CCCCeEEEEEE
Q psy7093 292 GICGHHMKLKLVENYKD----F-NNKDRFVELKL 320 (322)
Q Consensus 292 ~~~~~~~~~~~v~~~~D----~-~g~~R~~~~~~ 320 (322)
+.-.. -|..+..+.. . .|..-|+.+.+
T Consensus 206 ~tl~~--~F~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 206 RKLKE--VFPIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred HHHHH--HCCCEEEEEeECCcccCchheeEEeec
Confidence 33221 2444544432 1 24455666654
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=114.17 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=84.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
...+.+++.+... .+.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|+++.. ...++++|+
T Consensus 29 ~~a~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~---- 94 (251)
T PRK10258 29 QSADALLAMLPQR--KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA------ADHYLAGDI---- 94 (251)
T ss_pred HHHHHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCc----
Confidence 3445555555543 2378999999999999888775 6799999999999999987642 246788888
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+.++ +..++||+|++|.++....+ ...++.++.++|+|||.+++.+
T Consensus 95 --~~~~--~~~~~fD~V~s~~~l~~~~d--------------------------~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 95 --ESLP--LATATFDLAWSNLAVQWCGN--------------------------LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred --ccCc--CCCCcEEEEEECchhhhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEe
Confidence 2222 34568999999987654332 3478899999999999998864
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=107.77 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=108.4
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
..+++.+... ++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++.. ...++.++.+|+ .
T Consensus 29 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~-----~ 98 (223)
T TIGR01934 29 RRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADA-----E 98 (223)
T ss_pred HHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecch-----h
Confidence 3344444333 3479999999999999999999876 699999999999999998875 345689999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-c-CC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-N-HD- 282 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~-~~- 282 (322)
+. + +..++||+|+++-.+....+ ...+++.+.+.|+|||.+++.. . ..
T Consensus 99 ~~-~--~~~~~~D~i~~~~~~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 99 AL-P--FEDNSFDAVTIAFGLRNVTD--------------------------IQKALREMYRVLKPGGRLVILEFSKPAN 149 (223)
T ss_pred cC-C--CCCCcEEEEEEeeeeCCccc--------------------------HHHHHHHHHHHcCCCcEEEEEEecCCCc
Confidence 32 2 23568999998643322111 3478999999999999987621 1 00
Q ss_pred ----------------------------------------CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 283 ----------------------------------------HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 283 ----------------------------------------~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
..+.+.+++.+.| |..+.+...-.|...++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 150 ALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAG----FEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcC----CccceeeeeecceeeEEEecC
Confidence 2344667777775 677777777777778887754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-11 Score=113.43 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=114.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCc
Q psy7093 70 KNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~G 149 (322)
...+++.++.+.+........ .|--|...+.+... .. ........+.+...+.... +.+|||+|||
T Consensus 67 ~~~~~~~~~~~~l~~~l~~~~-----pwrkg~~~~~~~~~--~~-----ew~s~~k~~~l~~~l~~l~--g~~VLDIGCG 132 (322)
T PRK15068 67 SEEPLSEGQRKRIENLLRALM-----PWRKGPFSLFGIHI--DT-----EWRSDWKWDRVLPHLSPLK--GRTVLDVGCG 132 (322)
T ss_pred cCCCCCHHHHHHHHHHHHhhc-----CcccCCccccCeee--cc-----eehHHhHHHHHHHhhCCCC--CCEEEEeccC
Confidence 356788888888877665543 23333322222111 10 0011222344555554332 3799999999
Q ss_pred hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 150 sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
+|.++..++... ...|+|+|.|+.++..++......+...++.++.+|+ +.++ . .++||+|+|+--....
T Consensus 133 ~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~------e~lp--~-~~~FD~V~s~~vl~H~ 202 (322)
T PRK15068 133 NGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI------EQLP--A-LKAFDTVFSMGVLYHR 202 (322)
T ss_pred CcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH------HHCC--C-cCCcCEEEECChhhcc
Confidence 999999999884 3469999999998876554433333344699999997 3333 1 5689999995221111
Q ss_pred CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc---C-C--------------------CHH
Q psy7093 230 LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN---H-D--------------------HLD 285 (322)
Q Consensus 230 ~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~---~-~--------------------~~~ 285 (322)
.+ ...+++++.+.|+|||.++++.- . . ...
T Consensus 203 ~d--------------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~ 256 (322)
T PRK15068 203 RS--------------------------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVP 256 (322)
T ss_pred CC--------------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHH
Confidence 11 34789999999999999998731 0 0 235
Q ss_pred HHHHHHHHcCCCCceeeEEEe
Q psy7093 286 KIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 286 ~~~~~l~~~~~~~~~~~v~~~ 306 (322)
.+.+++++.| |..+++.
T Consensus 257 ~l~~~L~~aG----F~~i~~~ 273 (322)
T PRK15068 257 ALKNWLERAG----FKDVRIV 273 (322)
T ss_pred HHHHHHHHcC----CceEEEE
Confidence 6788888886 6766654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=108.93 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=92.1
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
||..+.+.+.+++.+.... +.+|||+|||+|.++..++..+ |..+++|+|+|+.+++.|+++... ...++++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~ 76 (241)
T PRK08317 1 LPDFRRYRARTFELLAVQP--GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRG 76 (241)
T ss_pred CchHHHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEec
Confidence 3455666677777666543 3799999999999999999987 678999999999999999988332 2345899999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ .. .+ +..++||+|+++-.+....+ ...+++.+.++|+|||.+++
T Consensus 77 d~-----~~-~~--~~~~~~D~v~~~~~~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 77 DA-----DG-LP--FPDGSFDAVRSDRVLQHLED--------------------------PARALAEIARVLRPGGRVVV 122 (241)
T ss_pred cc-----cc-CC--CCCCCceEEEEechhhccCC--------------------------HHHHHHHHHHHhcCCcEEEE
Confidence 87 22 21 24578999999754432221 24788999999999999887
Q ss_pred EE
Q psy7093 278 ET 279 (322)
Q Consensus 278 e~ 279 (322)
+.
T Consensus 123 ~~ 124 (241)
T PRK08317 123 LD 124 (241)
T ss_pred Ee
Confidence 54
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=120.87 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=115.0
Q ss_pred CeEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 106 ~~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+..+.+.++.|+ ...-++.+++++++++..... .++||+.||.|.|++.+|+. ..+|+|+|+++++++.|++|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~--~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA 335 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGG--ERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENA 335 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCC--CEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHH
Confidence 477888888887 345667888999999887533 78999999999999999976 689999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+++.| ++|..+|+ .+..........+|.||.|||=--.. +.+++
T Consensus 336 ~~n~i~N-~~f~~~~a-----e~~~~~~~~~~~~d~VvvDPPR~G~~----------------------------~~~lk 381 (432)
T COG2265 336 AANGIDN-VEFIAGDA-----EEFTPAWWEGYKPDVVVVDPPRAGAD----------------------------REVLK 381 (432)
T ss_pred HHcCCCc-EEEEeCCH-----HHHhhhccccCCCCEEEECCCCCCCC----------------------------HHHHH
Confidence 9999987 99999998 44333211235789999999943211 13444
Q ss_pred HHhccCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
.+. .++|..++++.+.+.....-...+.+.|
T Consensus 382 ~l~-~~~p~~IvYVSCNP~TlaRDl~~L~~~g 412 (432)
T COG2265 382 QLA-KLKPKRIVYVSCNPATLARDLAILASTG 412 (432)
T ss_pred HHH-hcCCCcEEEEeCCHHHHHHHHHHHHhCC
Confidence 443 4678889999888766555555555555
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=111.41 Aligned_cols=142 Identities=15% Similarity=0.292 Sum_probs=91.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..++... +..+|+++|+|+.+ .. .+++++++|+.+......+......++||
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 4799999999999999998876 45689999999853 12 23788888882211000000112356799
Q ss_pred EEEEcCC--CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcC
Q psy7093 219 LVVSNPP--YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICG 295 (322)
Q Consensus 219 lIv~NPP--y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~ 295 (322)
+|++|++ +........+ ......+.++..+.++|+|||.+++++.. .....+-..++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~- 162 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHL-----------------RSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL- 162 (188)
T ss_pred EEEcCCCCCCCCCccccHH-----------------HHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-
Confidence 9999853 3211111000 00122468899999999999999997633 2233344444442
Q ss_pred CCCceeeEEEecCCCCCCeE
Q psy7093 296 HHMKLKLVENYKDFNNKDRF 315 (322)
Q Consensus 296 ~~~~~~~v~~~~D~~g~~R~ 315 (322)
|..+++.+|..|+++-
T Consensus 163 ----~~~~~~~~~~~~~~~~ 178 (188)
T TIGR00438 163 ----FEKVKVTKPQASRKRS 178 (188)
T ss_pred ----hceEEEeCCCCCCccc
Confidence 6788999999998753
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.7e-12 Score=112.62 Aligned_cols=115 Identities=19% Similarity=0.302 Sum_probs=85.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
...++..+... ++.+|||+|||+|..+..++..+ +.+|+|+|+|+.+++.|+++... .+++.+.++|+ .
T Consensus 41 ~~~~l~~l~l~--~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~-----~ 109 (263)
T PTZ00098 41 TTKILSDIELN--ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDI-----L 109 (263)
T ss_pred HHHHHHhCCCC--CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCc-----c
Confidence 34555555443 23799999999999999998764 67999999999999999987653 34699999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
. . .++.++||+|+++..+.... . +-...+++++.++|||||.+++.
T Consensus 110 ~-~--~~~~~~FD~V~s~~~l~h~~------~------------------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 110 K-K--DFPENTFDMIYSRDAILHLS------Y------------------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred c-C--CCCCCCeEEEEEhhhHHhCC------H------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 1 13467899999964322111 0 01347999999999999999874
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=127.73 Aligned_cols=120 Identities=17% Similarity=0.281 Sum_probs=90.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..+..++..+|+.+|+|+|+|+.+++.|+++....+ .++.++++|. .+ ++..++.++||+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa-----~d-Lp~~fedeSFDv 490 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDA-----IN-LSSSFEKESVDT 490 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcch-----Hh-CccccCCCCEEE
Confidence 479999999999999999998899999999999999999998876554 3488899998 32 332245678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|++|++++.... |-| ..++..+......+++.+.+.|||||.+++.-+
T Consensus 491 VVsn~vLH~L~s----------yIp---~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFS----------YIE---YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhh----------hcc---cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999987653211 000 001112234467899999999999999988543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-12 Score=116.40 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=80.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+ ... . ..++||+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~-----~~~-~---~~~~fD~I 188 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDI-----NSA-S---IQEEYDFI 188 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEech-----hcc-c---ccCCccEE
Confidence 68999999999999999986 68999999999999999999988887 488888887 221 1 25689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+++..++... + +-...+++.+.++|+|||++++.
T Consensus 189 ~~~~vl~~l~------~------------------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 189 LSTVVLMFLN------R------------------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EEcchhhhCC------H------------------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 9976543211 1 11457899999999999996653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-13 Score=103.04 Aligned_cols=97 Identities=27% Similarity=0.494 Sum_probs=72.7
Q ss_pred EEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 143 MIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
|||+|||+|..+..++..+ |..+++|+|+|+.+++.++++....+. +++++++|+ . .++ ...++||+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~-----~-~l~--~~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADA-----R-DLP--FSDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCT-----T-CHH--HHSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCH-----h-HCc--ccCCCeeE
Confidence 7999999999999999986 458999999999999999999887665 589999998 2 232 24569999
Q ss_pred EEEc-CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 220 VVSN-PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 220 Iv~N-PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|++. -.+. .++++ ..+.+++++.++|+|||
T Consensus 71 v~~~~~~~~------~~~~~------------------~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 71 VVCSGLSLH------HLSPE------------------ELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEE-TTGGG------GSSHH------------------HHHHHHHHHHHTEEEEE
T ss_pred EEEcCCccC------CCCHH------------------HHHHHHHHHHHHhCCCC
Confidence 9993 2121 12222 25689999999999998
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=108.77 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
++..+++.+.... +.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++|+...++.+ +++.++|.
T Consensus 66 ~~~~l~~~l~~~~--~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~----- 135 (212)
T PRK00312 66 MVARMTELLELKP--GDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDG----- 135 (212)
T ss_pred HHHHHHHhcCCCC--CCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCc-----
Confidence 4455555555442 3799999999999999888773 489999999999999999999988765 99999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.+.++ ..++||+|+++.+.. .+.+.+.+.|+|||.+++.++
T Consensus 136 ~~~~~---~~~~fD~I~~~~~~~--------------------------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 136 WKGWP---AYAPFDRILVTAAAP--------------------------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ccCCC---cCCCcCEEEEccCch--------------------------------hhhHHHHHhcCCCcEEEEEEc
Confidence 44332 246899999975421 123345688999999999887
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=113.06 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=81.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.+++.+|+.+++++|. +.+++.+++|+...++.++++++.+|+ ++.. + +.+|+|
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~-----~~~~---~--~~~D~v 219 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI-----YKES---Y--PEADAV 219 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc-----cCCC---C--CCCCEE
Confidence 7999999999999999999999999999998 789999999999999988999999998 5321 1 236887
Q ss_pred EE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
++ +-.+. ..+ +....+++++.+.|+|||.+++
T Consensus 220 ~~~~~lh~-------~~~------------------~~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 220 LFCRILYS-------ANE------------------QLSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred EeEhhhhc-------CCh------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 65 32111 111 1135799999999999999866
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=114.75 Aligned_cols=121 Identities=14% Similarity=0.278 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..+...+....+. ++|||+|||+|+.++++|...| +.+|+++|.+++..+.|++|+++.|+.++++++.+
T Consensus 103 ~~~~g~lL~~L~~~~~a-----k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G 177 (278)
T PLN02476 103 SPDQAQLLAMLVQILGA-----ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG 177 (278)
T ss_pred CHHHHHHHHHHHHhcCC-----CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 56777777777666543 7999999999999999999875 56899999999999999999999999989999999
Q ss_pred cCCCcccccccCcCc---CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPDL---LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~~---~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++... ..++||+|+.+++- .-|..+++.+.++|+|||.
T Consensus 178 dA-----~e~L~~l~~~~~~~~FD~VFIDa~K-----------------------------~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 178 LA-----AESLKSMIQNGEGSSYDFAFVDADK-----------------------------RMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred CH-----HHHHHHHHhcccCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCcE
Confidence 98 55543211 13589999997642 1267888999999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 224 IV~D 227 (278)
T PLN02476 224 IVMD 227 (278)
T ss_pred EEEe
Confidence 9884
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=109.76 Aligned_cols=111 Identities=13% Similarity=0.216 Sum_probs=80.9
Q ss_pred eEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhcc---CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCH
Q psy7093 97 YIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLES---SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSK 173 (322)
Q Consensus 97 yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~---~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~ 173 (322)
++++...||+-.| ...+++|..++.++...++.+.. ...++.+|||+|||+|.++..++...|+.+++|+|+|+
T Consensus 1 ~~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~ 77 (204)
T TIGR03587 1 MKTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINE 77 (204)
T ss_pred CcchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH
Confidence 3566677887776 22367787777665544443321 11133689999999999999999887889999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCC
Q psy7093 174 HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225 (322)
Q Consensus 174 ~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPP 225 (322)
.+++.|+++.. ++.+.++|+ .++ +..++||+|+++--
T Consensus 78 ~~l~~A~~~~~------~~~~~~~d~-----~~~----~~~~sfD~V~~~~v 114 (204)
T TIGR03587 78 YAVEKAKAYLP------NINIIQGSL-----FDP----FKDNFFDLVLTKGV 114 (204)
T ss_pred HHHHHHHhhCC------CCcEEEeec-----cCC----CCCCCEEEEEECCh
Confidence 99999987642 367788888 442 24678999999744
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=122.57 Aligned_cols=173 Identities=16% Similarity=0.225 Sum_probs=109.1
Q ss_pred CCcccCchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHH
Q psy7093 114 PVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHFP--------KLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~~--------~~~v~~vDis~~al~~A~~n~~ 184 (322)
..|+|..-++.+++.+....... .....+|||+|||+|.+.++++..++ ...++|+|+++.++..|+.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 45678777777777765443211 00236899999999999999998764 2578999999999999999998
Q ss_pred HcCCCCcEEEEEccCCCcccccccC--cCcCCCCeeEEEEcCCCCCCCCCC-CCC------------------hhhhcc-
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQ--PDLLEQKFDLVVSNPPYVPSLDIP-KLE------------------PEIALY- 242 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~--~~~~~~~fDlIv~NPPy~~~~~~~-~l~------------------~~v~~~- 242 (322)
..+. ..+.+.+.|. +.... .....++||+||+||||....... ... ......
T Consensus 85 ~~~~-~~~~i~~~d~-----l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (524)
T TIGR02987 85 EFAL-LEINVINFNS-----LSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVL 158 (524)
T ss_pred hcCC-CCceeeeccc-----ccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhc
Confidence 7752 2356666665 22110 001235899999999999754211 100 000000
Q ss_pred ---cccccccCCCChhHHHHHH-HHHHhccCccCcEEEEEEcC-----CCHHHHHHHHHHcC
Q psy7093 243 ---EDIKALDGGHDGLNIIKPI-CVFGSNYLKPNGSIFLETNH-----DHLDKIKEWLGICG 295 (322)
Q Consensus 243 ---ep~~al~~g~~gl~~~~~~-l~~~~~~Lk~gG~l~~e~~~-----~~~~~~~~~l~~~~ 295 (322)
.|...+ .|-. ..|..+ ++.+.++|++||.+.+.++. ...+.+++.+-+..
T Consensus 159 ~~~~~~~~~-~g~~--~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~ 217 (524)
T TIGR02987 159 PYSDPIRKY-AGVG--TEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNR 217 (524)
T ss_pred chhhhhccc-CCcc--cHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCC
Confidence 011111 1111 245554 57899999999999987754 34567877776654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=111.87 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=95.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..++..+++..+. ++||++||++|+-++++|..+| +.+|+.+|++++..+.|++|+++.|+.++|+++.+
T Consensus 30 ~~~~g~lL~~l~~~~~~-----k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRP-----KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred CHHHHHHHHHHHHhcCC-----ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34566666666665543 7999999999999999999887 58999999999999999999999999899999999
Q ss_pred cCCCcccccccCcC---cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPD---LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~---~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++.. ...++||+|+.+-.- .-|..+++.+.++|+|||+
T Consensus 105 da-----~~~l~~l~~~~~~~~fD~VFiDa~K-----------------------------~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 105 DA-----LEVLPELANDGEEGQFDFVFIDADK-----------------------------RNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp -H-----HHHHHHHHHTTTTTSEEEEEEESTG-----------------------------GGHHHHHHHHHHHEEEEEE
T ss_pred cc-----HhhHHHHHhccCCCceeEEEEcccc-----------------------------cchhhHHHHHhhhccCCeE
Confidence 98 5544321 123589999996310 1166788888999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 151 ii~D 154 (205)
T PF01596_consen 151 IIAD 154 (205)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9984
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=106.94 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=88.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccC-cCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ-PDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~-~~~~~~~fD 218 (322)
+.+|||+|||+|.++..+++..+..+|+|+|+++.+++.+.++++.. .++.++.+|+ ..+.. ..+ .++||
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~-----~~~~~~~~l-~~~~D 143 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADA-----RKPERYAHV-VEKVD 143 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCC-----CCcchhhhc-cccCC
Confidence 37999999999999999999876678999999999999888877653 3488899998 22110 011 24699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-----CCC-----HHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-----HDH-----LDKIK 288 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-----~~~-----~~~~~ 288 (322)
+|+++.+. | +....+++.+.++|||||.+++.+. ... .+...
T Consensus 144 ~i~~d~~~-----------------p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~ 195 (226)
T PRK04266 144 VIYQDVAQ-----------------P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEI 195 (226)
T ss_pred EEEECCCC-----------------h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHH
Confidence 99986331 0 0023568899999999999998532 111 12244
Q ss_pred HHHHHcCCCCceeeEEEe
Q psy7093 289 EWLGICGHHMKLKLVENY 306 (322)
Q Consensus 289 ~~l~~~~~~~~~~~v~~~ 306 (322)
++++..| |..++..
T Consensus 196 ~~l~~aG----F~~i~~~ 209 (226)
T PRK04266 196 RKLEEGG----FEILEVV 209 (226)
T ss_pred HHHHHcC----CeEEEEE
Confidence 7777776 6665543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=105.87 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=78.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.++||+|||.|.-++.+|+. +..|+++|+|+.+++.+++-+...+++ ++..+.|+ .+.. ..+.||+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl-----~~~~----~~~~yD~ 97 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADL-----NDFD----FPEEYDF 97 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BG-----CCBS-----TTTEEE
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecc-----hhcc----ccCCcCE
Confidence 489999999999999999999 899999999999999999888888876 89999998 2221 2468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|++.-. +..++++. ...+++.....++|||++++++
T Consensus 98 I~st~v------~~fL~~~~------------------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVV------FMFLQREL------------------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESS------GGGS-GGG------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEE------eccCCHHH------------------HHHHHHHHHhhcCCcEEEEEEE
Confidence 998311 11222322 3578999999999999988865
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.5e-12 Score=108.94 Aligned_cols=119 Identities=20% Similarity=0.362 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-c
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH-A 197 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~-~ 197 (322)
|++-.++..++.... +++|||+||+.|+-++.+|..+| +.+++++|++++..+.|++|+++.|+.+++.++. +
T Consensus 45 ~e~g~~L~~L~~~~~-----~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLARLSG-----PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHHhcC-----CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 677777777766653 27999999999999999999999 7899999999999999999999999999999998 5
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ ++.+.. ...++||+|+.+-- . .-|..+++.+.++|+|||++++
T Consensus 120 da-----l~~l~~-~~~~~fDliFIDad------K-----------------------~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 120 DA-----LDVLSR-LLDGSFDLVFIDAD------K-----------------------ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cH-----HHHHHh-ccCCCccEEEEeCC------h-----------------------hhCHHHHHHHHHHhCCCcEEEE
Confidence 88 665543 34689999998520 0 1156899999999999999988
Q ss_pred E
Q psy7093 278 E 278 (322)
Q Consensus 278 e 278 (322)
.
T Consensus 165 D 165 (219)
T COG4122 165 D 165 (219)
T ss_pred e
Confidence 4
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-12 Score=108.35 Aligned_cols=127 Identities=24% Similarity=0.351 Sum_probs=89.5
Q ss_pred cCeEEEeCCC--CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPP--VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~--~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|.++.. .|.||-.+|. ..+.+.+.. +..|+|++||.|.+++.+|+..+...|+++|++|.+++..++|
T Consensus 71 ~G~~f~~D~~kvyfs~rl~~Er--~Ri~~~v~~----~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~N 144 (200)
T PF02475_consen 71 NGIRFKVDLSKVYFSPRLSTER--RRIANLVKP----GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKEN 144 (200)
T ss_dssp TTEEEEEETTTS---GGGHHHH--HHHHTC--T----T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHH
T ss_pred CCEEEEEccceEEEccccHHHH--HHHHhcCCc----ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHH
Confidence 5777877754 3346655554 345544433 3799999999999999999966678999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.+++..+++|. .+.+ ..+.||-|++|.|.... .++
T Consensus 145 i~lNkv~~~i~~~~~D~-----~~~~----~~~~~drvim~lp~~~~------------------------------~fl 185 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDA-----REFL----PEGKFDRVIMNLPESSL------------------------------EFL 185 (200)
T ss_dssp HHHTT-TTTEEEEES-G-----GG-------TT-EEEEEE--TSSGG------------------------------GGH
T ss_pred HHHcCCCCeEEEEcCCH-----HHhc----CccccCEEEECChHHHH------------------------------HHH
Confidence 99999999999999998 3332 26789999999885431 477
Q ss_pred HHHhccCccCcEEE
Q psy7093 263 VFGSNYLKPNGSIF 276 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~ 276 (322)
..+..++++||++-
T Consensus 186 ~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 186 DAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHEEEEEEEE
T ss_pred HHHHHHhcCCcEEE
Confidence 77889999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-12 Score=109.23 Aligned_cols=112 Identities=20% Similarity=0.247 Sum_probs=88.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|.|+|||+|..+-.+++++|.+.++|+|.|++|++.|+... . +.+|..+|+ ..+. +...+|+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p-~~~f~~aDl------~~w~---p~~~~dl 95 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----P-DATFEEADL------RTWK---PEQPTDL 95 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----C-CCceecccH------hhcC---CCCccch
Confidence 47899999999999999999999999999999999999986542 3 388999998 2222 4678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~ 292 (322)
+++|--+..-.+ .-.++.+....|.|||++.+.+..+..+....+++
T Consensus 96 lfaNAvlqWlpd--------------------------H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr 142 (257)
T COG4106 96 LFANAVLQWLPD--------------------------HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMR 142 (257)
T ss_pred hhhhhhhhhccc--------------------------cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHH
Confidence 999987655333 12678888899999999999998766544444443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=105.24 Aligned_cols=133 Identities=19% Similarity=0.278 Sum_probs=100.4
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.+..+.+..+..+-.|. ++..+++.+.... +.+|||||||||+.+..+|+. ..+|+.+|+.+...+.|++|+
T Consensus 42 Y~d~~lpi~~gqtis~P~---~vA~m~~~L~~~~--g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L 114 (209)
T COG2518 42 YEDRALPIGCGQTISAPH---MVARMLQLLELKP--GDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNL 114 (209)
T ss_pred ccCCcccCCCCceecCcH---HHHHHHHHhCCCC--CCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHH
Confidence 345556666777765554 5566677776653 389999999999999999998 459999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+|..| +.+.++|- ...++ ...+||.|+.+--. .. +-+
T Consensus 115 ~~lg~~n-V~v~~gDG-----~~G~~---~~aPyD~I~Vtaaa------~~--------------------------vP~ 153 (209)
T COG2518 115 ETLGYEN-VTVRHGDG-----SKGWP---EEAPYDRIIVTAAA------PE--------------------------VPE 153 (209)
T ss_pred HHcCCCc-eEEEECCc-----ccCCC---CCCCcCEEEEeecc------CC--------------------------CCH
Confidence 9999877 99999998 44443 35799999985211 11 112
Q ss_pred HHhccCccCcEEEEEEcCCCH
Q psy7093 264 FGSNYLKPNGSIFLETNHDHL 284 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~ 284 (322)
...+.|++||.+++-+|....
T Consensus 154 ~Ll~QL~~gGrlv~PvG~~~~ 174 (209)
T COG2518 154 ALLDQLKPGGRLVIPVGSGPA 174 (209)
T ss_pred HHHHhcccCCEEEEEEccCCc
Confidence 245679999999999984443
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-12 Score=113.06 Aligned_cols=111 Identities=17% Similarity=0.253 Sum_probs=84.5
Q ss_pred CCCeEEEEcCchhHH-HH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 139 TPTRMIEIGSGTGAI-TI-SLLKHFPKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~-~~-~la~~~~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.+.+|+|+|||.|.+ ++ .++..+|+.+++++|+|+++++.|++++.. .++.++++|..+|+ .+... ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da-----~~~~~---~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV-----MDVTE---SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch-----hhccc---ccC
Confidence 348999999997744 33 334567899999999999999999999964 78888999999999 44221 246
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+||+|+++ -.+.... + -+.++++++.+.|+|||++++-.+.+
T Consensus 195 ~FDlVF~~-ALi~~dk------~------------------~k~~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 195 EYDVVFLA-ALVGMDK------E------------------EKVKVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred CcCEEEEe-ccccccc------c------------------cHHHHHHHHHHhcCCCcEEEEecccc
Confidence 89999997 3222110 0 15689999999999999999977543
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=106.01 Aligned_cols=128 Identities=19% Similarity=0.269 Sum_probs=94.5
Q ss_pred HHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC------CEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccCC
Q psy7093 129 ITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK------LKAIAIDQSKHACDLTEQNAVMHNVAN--QLQVFHAEID 200 (322)
Q Consensus 129 i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~------~~v~~vDis~~al~~A~~n~~~~~l~~--~i~~~~~D~~ 200 (322)
.+..+... +..++||+|||||-++.-+.+..+. .+|+..|+|+++|..+++.+++.++.. ++.++.+|+
T Consensus 92 ~v~~L~p~--~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA- 168 (296)
T KOG1540|consen 92 FVSKLGPG--KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA- 168 (296)
T ss_pred hhhccCCC--CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc-
Confidence 33444443 3379999999999999999998766 899999999999999999997777654 489999998
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE-EEE
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF-LET 279 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~-~e~ 279 (322)
+.++ ++...||...+---.-... ...+.++++.|+|||||.+. +|.
T Consensus 169 -----E~Lp--Fdd~s~D~yTiafGIRN~t--------------------------h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 169 -----EDLP--FDDDSFDAYTIAFGIRNVT--------------------------HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred -----ccCC--CCCCcceeEEEecceecCC--------------------------CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 5665 5788999887621111111 14689999999999999864 455
Q ss_pred cCCCHHHHHHHHH
Q psy7093 280 NHDHLDKIKEWLG 292 (322)
Q Consensus 280 ~~~~~~~~~~~l~ 292 (322)
.....+.+..+..
T Consensus 216 skv~~~~l~~fy~ 228 (296)
T KOG1540|consen 216 SKVENEPLKWFYD 228 (296)
T ss_pred cccccHHHHHHHH
Confidence 5444444544443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=114.98 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=104.4
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--------------------------------C-
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--------------------------------L- 164 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--------------------------------~- 164 (322)
|.|-.|.+...++........ ..++|+-||||.+.+..|..-++ +
T Consensus 172 ~ApLketLAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence 557788888888877665543 68999999999999999876431 1
Q ss_pred ------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChh
Q psy7093 165 ------KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 165 ------~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
.++|+|+++.+++.|+.|+...|+.+.|+|.++|+ ..+...+ ..+|+|||||||...-.-. ..
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~------~~l~~~~--~~~gvvI~NPPYGeRlg~~---~~ 318 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA------TDLKEPL--EEYGVVISNPPYGERLGSE---AL 318 (381)
T ss_pred hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch------hhCCCCC--CcCCEEEeCCCcchhcCCh---hh
Confidence 37899999999999999999999999999999998 3443211 6899999999997432211 00
Q ss_pred hhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 239 v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
--.+|+.+.+.+.+.++--+..+| +++.
T Consensus 319 ---------------v~~LY~~fg~~lk~~~~~ws~~v~-tt~e 346 (381)
T COG0116 319 ---------------VAKLYREFGRTLKRLLAGWSRYVF-TTSE 346 (381)
T ss_pred ---------------HHHHHHHHHHHHHHHhcCCceEEE-EccH
Confidence 113689999999999988888777 4443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=111.44 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=84.1
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+|+....++...+.+++.++..++.+++.+... ..++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|
T Consensus 108 iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 108 IYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERR 185 (315)
T ss_pred hcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHH
Confidence 456656666667778888888888888887643 113479999999999999999987 67999999999999999999
Q ss_pred HHHcCC----CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCC
Q psy7093 183 AVMHNV----ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225 (322)
Q Consensus 183 ~~~~~l----~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPP 225 (322)
+...+. ..++.+...|+ . .+ .++||+|+|.-.
T Consensus 186 ~~~~~~~~~~~~~~~f~~~Dl-----~-~l-----~~~fD~Vv~~~v 221 (315)
T PLN02585 186 AKEALAALPPEVLPKFEANDL-----E-SL-----SGKYDTVTCLDV 221 (315)
T ss_pred HHhcccccccccceEEEEcch-----h-hc-----CCCcCEEEEcCE
Confidence 876521 13478888887 2 21 468999998643
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=108.91 Aligned_cols=101 Identities=32% Similarity=0.437 Sum_probs=80.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++...+..+++++|+++.+++.++.+.. .++.++.+|+ .+ .+ +..++||+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~-----~~-~~--~~~~~fD~ 101 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA-----EK-LP--LEDSSFDL 101 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch-----hh-CC--CCCCceeE
Confidence 368999999999999999999888899999999999999887653 2588899998 22 22 24568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++-......+ ...++..+.++|+|||.+++..
T Consensus 102 vi~~~~l~~~~~--------------------------~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 102 IVSNLALQWCDD--------------------------LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEEhhhhhhccC--------------------------HHHHHHHHHHHcCCCcEEEEEe
Confidence 999765443222 3478999999999999998864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=124.34 Aligned_cols=106 Identities=22% Similarity=0.211 Sum_probs=81.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC------------------------------------
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF------------------------------------ 161 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~------------------------------------ 161 (322)
|.|-.|.+...++....... .+..++|++||||.+.+..|...
T Consensus 170 ~Apl~etlAaa~l~~a~w~~-~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQ-EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCC-CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 56778888888887654311 23789999999999999887631
Q ss_pred ------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 162 ------PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 162 ------~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
...+++|+|+++.+++.|++|+..+|+.+++++.++|+ .+ ++.....++||+||+||||...-
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~-----~~-~~~~~~~~~~d~IvtNPPYg~r~ 317 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV-----AD-LKNPLPKGPTGLVISNPPYGERL 317 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh-----hh-cccccccCCCCEEEECCCCcCcc
Confidence 11369999999999999999999999988899999998 33 22111235799999999998643
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-13 Score=103.00 Aligned_cols=99 Identities=22% Similarity=0.322 Sum_probs=62.5
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
||+|||+|.++..++..+|..+++++|+|+.+++.|+++.......+ ......+. .+... ....++||+|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~-----~~~~~-~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDV-----LDLFD-YDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--S-----SS----CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeec-----CChhh-cccccccceehhh
Confidence 79999999999999999999999999999999998988887766432 33444333 11111 1123589999996
Q ss_pred CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 224 PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
-..+...+ .+.+++++.++|+|||++
T Consensus 74 ~vl~~l~~--------------------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLED--------------------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---------------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhh--------------------------HHHHHHHHHHHcCCCCCC
Confidence 44333211 458999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=106.50 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=97.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|+|.|+|||.++..+|... |..+|+.+|+.++.++.|++|++..++.+++++..+|+ .+.. ....|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv-----~~~~----~~~~v 164 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV-----REGI----DEEDV 164 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc-----cccc----ccccc
Confidence 44899999999999999999754 55899999999999999999999999998899999999 3332 23489
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGH 296 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~ 296 (322)
|.|+.+.|=. -.+++.+.+.|+|||.+++-.+ -+|.+.+.+.+++.|+
T Consensus 165 Dav~LDmp~P-------------------------------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 165 DAVFLDLPDP-------------------------------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred CEEEEcCCCh-------------------------------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 9999986521 1688999999999999888665 3677777777888764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-11 Score=105.28 Aligned_cols=137 Identities=23% Similarity=0.345 Sum_probs=99.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
.++..+.-. ++.+|+|.|+|||.++.++++.. |..+|+..|+.++..+.|++|++.+++.+++++.+.|+...+.
T Consensus 31 ~I~~~l~i~--pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~-- 106 (247)
T PF08704_consen 31 YILMRLDIR--PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF-- 106 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG----
T ss_pred HHHHHcCCC--CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc--
Confidence 344444444 34899999999999999999764 6789999999999999999999999998889999999932111
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC-ccCcEEEEEEc-CCCH
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL-KPNGSIFLETN-HDHL 284 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L-k~gG~l~~e~~-~~~~ 284 (322)
... .+..+|.|+.+.|- |. ..+..+.+.| ++||.+++=.+ -.|-
T Consensus 107 --~~~-~~~~~DavfLDlp~-----------------Pw--------------~~i~~~~~~L~~~gG~i~~fsP~ieQv 152 (247)
T PF08704_consen 107 --DEE-LESDFDAVFLDLPD-----------------PW--------------EAIPHAKRALKKPGGRICCFSPCIEQV 152 (247)
T ss_dssp --STT--TTSEEEEEEESSS-----------------GG--------------GGHHHHHHHE-EEEEEEEEEESSHHHH
T ss_pred --ccc-ccCcccEEEEeCCC-----------------HH--------------HHHHHHHHHHhcCCceEEEECCCHHHH
Confidence 111 13679999998763 22 3567788889 89999877554 3677
Q ss_pred HHHHHHHHHcCCCCceeeEEEe
Q psy7093 285 DKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+...+.|++.| |..++++
T Consensus 153 ~~~~~~L~~~g----f~~i~~~ 170 (247)
T PF08704_consen 153 QKTVEALREHG----FTDIETV 170 (247)
T ss_dssp HHHHHHHHHTT----EEEEEEE
T ss_pred HHHHHHHHHCC----CeeeEEE
Confidence 77788888875 6666543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=114.19 Aligned_cols=147 Identities=21% Similarity=0.333 Sum_probs=108.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHc-------------------------CCCceeEecc----eeecCeEEEeCCCCcc--c
Q psy7093 70 KNTELTNDQITHLNKLCECRLA-------------------------RMPVQYIIKE----WNFRDLTLKMTPPVFI--P 118 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~-------------------------~~p~~yi~g~----~~f~~~~~~v~~~~~i--p 118 (322)
....++.++...+++.++.|.. +.|++++-|+ ..+.|++|.++|+.|+ .
T Consensus 285 ~~~~l~~e~l~e~~~ki~~~f~~~~~~a~~l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~N 364 (534)
T KOG2187|consen 285 HPCKLATEELTELKKKIEQRFLSGPGFASGLRVLYLQESGHTSDGQEGKPLQLVGGDPYITESLLGLTFRISPGAFFQTN 364 (534)
T ss_pred EeecccHHHHHHHHHHHHHHHhcccccccceeEEEEecccccccCCCCCCeEEEccccEEEeecCCeEEEECCchhhccC
Confidence 3455666666666665555442 2455665554 3578999999999998 4
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
.+..|.+...+-++...... +.++|+|||||.+++++|+. ..+|+|+|+++++++-|++|++.+|++| .+|+++-
T Consensus 365 t~~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gq 439 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQ 439 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccc-eeeeecc
Confidence 56777777888887766543 78999999999999999988 6789999999999999999999999886 9999995
Q ss_pred CCCcccccccCcCcC--CCCee-EEEEcCCC
Q psy7093 199 IDSKGQVKNLQPDLL--EQKFD-LVVSNPPY 226 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~--~~~fD-lIv~NPPy 226 (322)
+ .+.++..+. .+.-+ ++|.|||-
T Consensus 440 a-----E~~~~sl~~~~~~~~~~v~iiDPpR 465 (534)
T KOG2187|consen 440 A-----EDLFPSLLTPCCDSETLVAIIDPPR 465 (534)
T ss_pred h-----hhccchhcccCCCCCceEEEECCCc
Confidence 4 222222111 12334 77889985
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=105.65 Aligned_cols=132 Identities=16% Similarity=0.241 Sum_probs=93.7
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n 182 (322)
|.+..+.++.+..+..| .++..+++.+.-. ++.+|||+|||||+.+..++.... ...|+++|+++..++.|++|
T Consensus 42 Y~d~~l~i~~~~~is~P---~~~a~~l~~L~l~--pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 42 YEDRPLPIGCGQTISAP---SMVARMLEALDLK--PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRN 116 (209)
T ss_dssp TSSS-EEEETTEEE--H---HHHHHHHHHTTC---TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHH
T ss_pred CCCCCeeecceeechHH---HHHHHHHHHHhcC--CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHH
Confidence 44566666666666444 4566777777655 348999999999999999998754 34799999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..++.. ++.++++|. ...++ ...+||.|+++.... .+-
T Consensus 117 l~~~~~~-nv~~~~gdg-----~~g~~---~~apfD~I~v~~a~~--------------------------------~ip 155 (209)
T PF01135_consen 117 LARLGID-NVEVVVGDG-----SEGWP---EEAPFDRIIVTAAVP--------------------------------EIP 155 (209)
T ss_dssp HHHHTTH-SEEEEES-G-----GGTTG---GG-SEEEEEESSBBS--------------------------------S--
T ss_pred HHHhccC-ceeEEEcch-----hhccc---cCCCcCEEEEeeccc--------------------------------hHH
Confidence 9999876 599999998 44443 356899999975331 122
Q ss_pred HHHhccCccCcEEEEEEcC
Q psy7093 263 VFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~ 281 (322)
....+.|++||.|++-++.
T Consensus 156 ~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 156 EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp HHHHHTEEEEEEEEEEESS
T ss_pred HHHHHhcCCCcEEEEEEcc
Confidence 2355679999999998875
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-11 Score=116.47 Aligned_cols=127 Identities=20% Similarity=0.337 Sum_probs=89.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHH--c---CC-CCcEEEEEccCCCcccccccCcCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVM--H---NV-ANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~--~---~l-~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
+++|||+|||+|..+..+++. +. .+|+++|+|+++++.|++|... . .+ .++++++.+|. .+.+..
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da-----~~~l~~-- 369 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA-----FNWLRK-- 369 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH-----HHHHHh--
Confidence 479999999999999999875 54 7999999999999999985321 1 12 35799999998 544432
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHH---HH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLD---KI 287 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~---~~ 287 (322)
..++||+|++|+|......... + +.+.+++.+.+.|+|||.+++..+. .+.+ .+
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~-------------L--------~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i 428 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGK-------------L--------YSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSI 428 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhc-------------c--------chHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHH
Confidence 2468999999987543211000 0 1346888899999999999987642 2233 34
Q ss_pred HHHHHHcC
Q psy7093 288 KEWLGICG 295 (322)
Q Consensus 288 ~~~l~~~~ 295 (322)
.+.+++.|
T Consensus 429 ~~~l~~~g 436 (521)
T PRK03612 429 EATLEAAG 436 (521)
T ss_pred HHHHHHcC
Confidence 44555553
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-11 Score=104.13 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=75.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEEEccCCCcccccccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH-----------NVANQLQVFHAEIDSKGQVKNLQ 209 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~-----------~l~~~i~~~~~D~~~~~~~~~l~ 209 (322)
.+|||+|||.|.-++.+|.+ +..|+|+|+|+.|++.+....... .-..+++++++|+ ++...
T Consensus 36 ~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~-----~~~~~ 108 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF-----FALTA 108 (213)
T ss_pred CeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC-----CCCCc
Confidence 69999999999999999987 899999999999999864321100 0023589999999 44321
Q ss_pred cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 210 ~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
. ..++||.|+-.--++ .++++. -..+++.+.++|+|||.+++++
T Consensus 109 ~--~~~~fD~i~D~~~~~------~l~~~~------------------R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 109 A--DLGPVDAVYDRAALI------ALPEEM------------------RQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred c--cCCCcCEEEechhhc------cCCHHH------------------HHHHHHHHHHHcCCCCeEEEEE
Confidence 0 135789888643322 333433 3478999999999999866653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=101.85 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
.+.+.+.+++.+.....++.+|||+|||+|.++..++.. +.+|+|+|+|+.++..|++++...+..+++.+.++|+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-- 113 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL-- 113 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--
Confidence 345556666666521113479999999999999999886 5799999999999999999998777656799999998
Q ss_pred cccccccCcCcCCCCeeEEEEc
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~N 223 (322)
.. + . ++||+|++.
T Consensus 114 ---~~-~----~-~~fD~ii~~ 126 (219)
T TIGR02021 114 ---LS-L----C-GEFDIVVCM 126 (219)
T ss_pred ---hh-C----C-CCcCEEEEh
Confidence 22 1 2 689999984
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.6e-12 Score=111.15 Aligned_cols=100 Identities=25% Similarity=0.414 Sum_probs=76.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccCCCcccccccCcCcCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN-----QLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~-----~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.+|||+|||+|.++..||+. +++|+|+|+++++++.|++.....-..+ ++++.+.|+ +.+ .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~------E~~-----~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV------EGL-----TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch------hhc-----cc
Confidence 67999999999999999999 7999999999999999999954432222 366777776 222 35
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+||.|+|---+....+ .+.++..+.++|||||.+++.+
T Consensus 158 ~fDaVvcsevleHV~d--------------------------p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKD--------------------------PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ccceeeeHHHHHHHhC--------------------------HHHHHHHHHHHhCCCCceEeee
Confidence 6999999322211111 3578999999999999999965
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-10 Score=96.51 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=91.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.++||+|||.|.++..||.+ ..+++++|+|+.|++.|++..... + +|++++.|+ -+. .+.++||+|
T Consensus 45 ~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~--~-~V~~~~~dv-----p~~----~P~~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL--P-HVEWIQADV-----PEF----WPEGRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-T-----TT-------SS-EEEE
T ss_pred ceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC--C-CeEEEECcC-----CCC----CCCCCeeEE
Confidence 68999999999999999999 468999999999999999887643 3 599999998 332 367899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-------C---CHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-------D---HLDKIKEW 290 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-------~---~~~~~~~~ 290 (322)
|.- ||..|=. ..+-.+.++..+...|+|||.+++.+-. . ..+.+.++
T Consensus 111 V~S--------------EVlYYL~---------~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~ 167 (201)
T PF05401_consen 111 VLS--------------EVLYYLD---------DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEM 167 (201)
T ss_dssp EEE--------------S-GGGSS---------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHH
T ss_pred EEe--------------hHhHcCC---------CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHH
Confidence 882 2222211 1123568899999999999999997622 1 25678888
Q ss_pred HHHcCCCCceeeEEEecCCCCCCeEEE
Q psy7093 291 LGICGHHMKLKLVENYKDFNNKDRFVE 317 (322)
Q Consensus 291 l~~~~~~~~~~~v~~~~D~~g~~R~~~ 317 (322)
+.+.-. -...+++.-...+-|.++.
T Consensus 168 ~~~~~~--~~~~~~~~~~~~~~~~~~~ 192 (201)
T PF05401_consen 168 LQEHLT--EVERVECRGGSPNEDCLLA 192 (201)
T ss_dssp HHHHSE--EEEEEEEE-SSTTSEEEEE
T ss_pred HHHHhh--heeEEEEcCCCCCCceEee
Confidence 887631 1334445554555444443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=103.79 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=99.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V-ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+||++|||+|.++..+++..+..+++++|+++.+++.|++++...+ + ..+++++.+|. .+.+.. ..++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~-----~~~l~~--~~~~ 145 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG-----FKFLAD--TENT 145 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch-----HHHHHh--CCCC
Confidence 469999999999999999887656799999999999999999875542 1 24688888887 444332 2468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~ 294 (322)
||+||+|++...... . .| +...+++.+.+.|+|||.+++..+. .+...+..+.+.-
T Consensus 146 yDvIi~D~~~~~~~~-~-------------~l--------~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl 203 (270)
T TIGR00417 146 FDVIIVDSTDPVGPA-E-------------TL--------FTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDV 203 (270)
T ss_pred ccEEEEeCCCCCCcc-c-------------ch--------hHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHH
Confidence 999999987432111 0 00 1357888899999999999986543 2244444433322
Q ss_pred CCCCceeeEEEecC-----CCCCCeEEEEEE
Q psy7093 295 GHHMKLKLVENYKD-----FNNKDRFVELKL 320 (322)
Q Consensus 295 ~~~~~~~~v~~~~D-----~~g~~R~~~~~~ 320 (322)
.. .|..+..+.- ..|..-|+++.+
T Consensus 204 ~~--~F~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 204 KE--AFPITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred HH--HCCCeEEEEEEcCccccchhEEEEEEC
Confidence 11 1444443322 125556666654
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.4e-11 Score=89.63 Aligned_cols=103 Identities=24% Similarity=0.430 Sum_probs=80.4
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+++|+|||+|.++..++. .+..+++++|+++.++..++++....+ ..++++...|+ .+... ...++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~--~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDA-----EELPP--EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcCh-----hhhcc--ccCCceEEEE
Confidence 489999999999999988 467899999999999999986443333 34689999998 33321 1356899999
Q ss_pred EcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 222 SNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 222 ~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|+|+.... .....+++.+.+.|+|||.+++.
T Consensus 72 ~~~~~~~~~-------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLV-------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred Eccceeehh-------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 999976520 12568899999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-11 Score=111.96 Aligned_cols=115 Identities=23% Similarity=0.447 Sum_probs=77.9
Q ss_pred CeEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 106 ~~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+..|.++|+.|+ ....++.+++.+++++.... ..+||++||+|.+++.+|.. ..+|+|+|+++.+++.|++|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na 238 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENA 238 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHH
Confidence 467889999997 45667888899988887642 47999999999999999998 578999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcc-------cccccCc-CcCCCCeeEEEEcCCC
Q psy7093 184 VMHNVANQLQVFHAEIDSKG-------QVKNLQP-DLLEQKFDLVVSNPPY 226 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~-------~~~~l~~-~~~~~~fDlIv~NPPy 226 (322)
+.+++.+ ++|+++++.+-. .+..+.. .+....+|+|+.|||=
T Consensus 239 ~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 239 KLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp HHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred HHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence 9999875 999988761100 0000000 0122368999999994
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=102.67 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=74.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||||.++..+++.. +.+|+|+|+|+++++.|+++ ..++++|+ ..++ +++++||+|
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~------~~lp--~~d~sfD~v 114 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---------DDKVVGSF------EALP--FRDKSFDVV 114 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---------cceEEech------hhCC--CCCCCEEEE
Confidence 799999999999999999886 57999999999999999753 12467777 3333 357899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
+++.......+ ....++++.++||| +..++|++...
T Consensus 115 ~~~~~l~~~~d--------------------------~~~~l~e~~RvLkp-~~~ile~~~p~ 150 (226)
T PRK05785 115 MSSFALHASDN--------------------------IEKVIAEFTRVSRK-QVGFIAMGKPD 150 (226)
T ss_pred EecChhhccCC--------------------------HHHHHHHHHHHhcC-ceEEEEeCCCC
Confidence 99754432221 34789999999999 45567776543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-11 Score=109.55 Aligned_cols=110 Identities=17% Similarity=0.290 Sum_probs=77.8
Q ss_pred CCeEEEEcCchhH----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHH----cC-------------------
Q psy7093 140 PTRMIEIGSGTGA----ITISLLKHFP-----KLKAIAIDQSKHACDLTEQNAVM----HN------------------- 187 (322)
Q Consensus 140 ~~~iLDlg~GsG~----~~~~la~~~~-----~~~v~~vDis~~al~~A~~n~~~----~~------------------- 187 (322)
+.+|+|+|||||. +++.++...+ +.+|+|+|+|+.+++.|++.+.. .+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4799999999995 5666666544 47899999999999999986421 01
Q ss_pred ---CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHH
Q psy7093 188 ---VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 188 ---l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
+.++++|.+.|+ .+.. .+.++||+|+|.--++ .++++. ..++++.
T Consensus 180 ~~~ir~~V~F~~~dl-----~~~~---~~~~~fD~I~crnvl~------yf~~~~------------------~~~~l~~ 227 (264)
T smart00138 180 KPELKERVRFAKHNL-----LAES---PPLGDFDLIFCRNVLI------YFDEPT------------------QRKLLNR 227 (264)
T ss_pred ChHHhCcCEEeeccC-----CCCC---CccCCCCEEEechhHH------hCCHHH------------------HHHHHHH
Confidence 123688999998 4322 2357899999942221 111111 3479999
Q ss_pred HhccCccCcEEEEEEcC
Q psy7093 265 GSNYLKPNGSIFLETNH 281 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~ 281 (322)
+.+.|+|||++++....
T Consensus 228 l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 228 FAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHhCCCeEEEEECcc
Confidence 99999999999985443
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-10 Score=103.38 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred EEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH--H-
Q psy7093 108 TLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA--V- 184 (322)
Q Consensus 108 ~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~--~- 184 (322)
.+..+....+-..+-..+.+.+....-.....+.+||++|||+|..+..+++..+..+|++||+++.+++.|++.- .
T Consensus 119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 4555554444333333344544442211112347999999999999888888755679999999999999999631 1
Q ss_pred --HcCC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 185 --MHNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 185 --~~~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
...+ .+|++++.+|. .+.+.. ..++||+|++|+|-...... ..| +-..+
T Consensus 199 ~~~~~~~DpRV~vvi~Da-----~~fL~~--~~~~YDVIIvDl~DP~~~~~-------------~~L--------yT~EF 250 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDA-----KEFLSS--PSSLYDVIIIDFPDPATELL-------------STL--------YTSEL 250 (374)
T ss_pred hccccCCCCceEEEECcH-----HHHHHh--cCCCccEEEEcCCCccccch-------------hhh--------hHHHH
Confidence 1112 46899999998 554432 34689999999763221100 001 12578
Q ss_pred HHHHhccCccCcEEEEEEcCCC--H---HHHHHHHHHcCCCCceeeEE-EecCCCCCCeEEEEEE
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDH--L---DKIKEWLGICGHHMKLKLVE-NYKDFNNKDRFVELKL 320 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~--~---~~~~~~l~~~~~~~~~~~v~-~~~D~~g~~R~~~~~~ 320 (322)
++.+.+.|+|||++++..+... . ..+.+.+++.+.. -.... ...-+.+..-|+++.+
T Consensus 251 y~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~--v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 251 FARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT--VKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred HHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc--eEEEEEecCCCCCceEEEEEeC
Confidence 8899999999999887644221 1 2245566666531 11111 2223333366666654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=106.67 Aligned_cols=115 Identities=14% Similarity=0.226 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.++..+++.+...+ +.+|||+|||+|.++..+++..+. ..|+++|+++.+++.|++|++.++.. ++.++++|.
T Consensus 67 ~l~a~ll~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~--- 140 (322)
T PRK13943 67 SLMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDG--- 140 (322)
T ss_pred HHHHHHHHhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCh---
Confidence 35555666554432 379999999999999999988653 47999999999999999999998875 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+..+ ..++||+|+++... ..+...+.+.|+|||.+++.++.
T Consensus 141 --~~~~~---~~~~fD~Ii~~~g~--------------------------------~~ip~~~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 141 --YYGVP---EFAPYDVIFVTVGV--------------------------------DEVPETWFTQLKEGGRVIVPINL 182 (322)
T ss_pred --hhccc---ccCCccEEEECCch--------------------------------HHhHHHHHHhcCCCCEEEEEeCC
Confidence 43332 23579999985210 12233456789999999887643
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-10 Score=100.18 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
..++.+....... ++.+|||+|||+|.++..+++. +.+++++|+++.+++.|++++...+. ++.+...|+
T Consensus 35 ~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~---- 104 (233)
T PRK05134 35 LRLNYIREHAGGL--FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL--KIDYRQTTA---- 104 (233)
T ss_pred HHHHHHHHhccCC--CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCH----
Confidence 3345555554433 3478999999999999998886 57899999999999999999877665 377888877
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.. ... ...++||+|+++-.+....+ ...+++.+.++|+|||.+++..
T Consensus 105 -~~-~~~-~~~~~fD~Ii~~~~l~~~~~--------------------------~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 105 -EE-LAA-EHPGQFDVVTCMEMLEHVPD--------------------------PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred -HH-hhh-hcCCCccEEEEhhHhhccCC--------------------------HHHHHHHHHHHcCCCcEEEEEe
Confidence 22 211 13468999999644332221 2368899999999999998864
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=110.51 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=83.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+++.+... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++. ++ .+++...|. .
T Consensus 157 ~~l~~~l~l~--~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~-----~- 223 (383)
T PRK11705 157 DLICRKLQLK--PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDY-----R- 223 (383)
T ss_pred HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECch-----h-
Confidence 3444444433 33799999999999999999875 5799999999999999999884 32 278888887 2
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ .++||.|+++..+.... ...+..+++.+.++|||||.+++..
T Consensus 224 ~l-----~~~fD~Ivs~~~~ehvg------------------------~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 224 DL-----NGQFDRIVSVGMFEHVG------------------------PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hc-----CCCCCEEEEeCchhhCC------------------------hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 21 36899999976543221 1225688999999999999998853
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-11 Score=104.56 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=97.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..+...+++..+. ++||++||++|+-++++|..+| +.+++++|.+++..+.|++|+++.|+.++|+++.+
T Consensus 64 ~~~~g~lL~~l~~~~~a-----k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G 138 (247)
T PLN02589 64 SADEGQFLNMLLKLINA-----KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
T ss_pred CHHHHHHHHHHHHHhCC-----CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence 45667777777666543 7899999999999999999874 67999999999999999999999999999999999
Q ss_pred cCCCcccccccCcCcC----CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 198 EIDSKGQVKNLQPDLL----EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~----~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|+ .+.++.... .++||+|+.+-- -+.|..+++.+.++|+|||
T Consensus 139 ~a-----~e~L~~l~~~~~~~~~fD~iFiDad-----------------------------K~~Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 139 PA-----LPVLDQMIEDGKYHGTFDFIFVDAD-----------------------------KDNYINYHKRLIDLVKVGG 184 (247)
T ss_pred cH-----HHHHHHHHhccccCCcccEEEecCC-----------------------------HHHhHHHHHHHHHhcCCCe
Confidence 98 555443111 368999999521 0126678888889999999
Q ss_pred EEEEE
Q psy7093 274 SIFLE 278 (322)
Q Consensus 274 ~l~~e 278 (322)
++++.
T Consensus 185 viv~D 189 (247)
T PLN02589 185 VIGYD 189 (247)
T ss_pred EEEEc
Confidence 99874
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.5e-11 Score=107.78 Aligned_cols=93 Identities=29% Similarity=0.380 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++...... +.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++++...+..++++++++|+
T Consensus 23 ~i~~~Iv~~~~~~~--~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---- 94 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---- 94 (294)
T ss_pred HHHHHHHHhcCCCC--cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH----
Confidence 45566666655432 378999999999999999987 5689999999999999999998777556799999999
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
++. ....||+||+|+||.-+.
T Consensus 95 -l~~-----~~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 -LKT-----EFPYFDVCVANVPYQISS 115 (294)
T ss_pred -hhh-----cccccCEEEecCCcccCc
Confidence 432 224689999999997654
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.3e-11 Score=101.66 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=97.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+||+|||.|.+.+.+|...|+..++|+|++...+..|...+...++.| +.++++|+ ...+...+..+++|-|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da-----~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDA-----RELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-C-----TTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccH-----HHHHhhcccCCchheE
Confidence 48999999999999999999999999999999999999999999988865 99999998 4434333456899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHHHHH-cCCCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEWLGI-CGHHM 298 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~-~~~~~ 298 (322)
..|-|=......+. .. .|. ...+++...+.|+|||.+.+-+... ....+.+.+.. ++
T Consensus 93 ~i~FPDPWpK~rH~---kr-------Rl~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~--- 151 (195)
T PF02390_consen 93 YINFPDPWPKKRHH---KR-------RLV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHP--- 151 (195)
T ss_dssp EEES-----SGGGG---GG-------STT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHST---
T ss_pred EEeCCCCCcccchh---hh-------hcC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCc---
Confidence 99876433222110 00 111 2478999999999999998877643 35666677777 34
Q ss_pred ceeeEE
Q psy7093 299 KLKLVE 304 (322)
Q Consensus 299 ~~~~v~ 304 (322)
+|..+.
T Consensus 152 ~f~~~~ 157 (195)
T PF02390_consen 152 GFENIE 157 (195)
T ss_dssp TEEEE-
T ss_pred CeEEcc
Confidence 366553
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-11 Score=101.44 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=59.2
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
.|+|++||.|.-++++|+. ..+|+++|+++..++.|+.|++.+|+.++|.++++|+ ++.+........+|+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~-----~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF-----FELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H-----HHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH-----HHHHhhccccccccEEE
Confidence 6999999999999999999 4689999999999999999999999999999999999 65543211112289999
Q ss_pred EcCCCCC
Q psy7093 222 SNPPYVP 228 (322)
Q Consensus 222 ~NPPy~~ 228 (322)
.+|||.-
T Consensus 75 lSPPWGG 81 (163)
T PF09445_consen 75 LSPPWGG 81 (163)
T ss_dssp E---BSS
T ss_pred ECCCCCC
Confidence 9999975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=110.55 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=81.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||++||+|.+++.++.+.+..+|+++|+++.+++.+++|++.+++.+ ++++++|+ ...+.. .++||+|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da-----~~~l~~---~~~fD~V 129 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDA-----NALLHE---ERKFDVV 129 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhH-----HHHHhh---cCCCCEE
Confidence 58999999999999999998766699999999999999999999999864 77999998 333321 3579999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.||| ... ..++..+...+++||++++.
T Consensus 130 ~lDP~-Gs~-----------------------------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 130 DIDPF-GSP-----------------------------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EECCC-CCc-----------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 99986 211 15667777888999999885
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=104.24 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=76.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK---LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~---~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
.+|||+|||+|.++..+++.++. ..++|+|+|+.+++.|+++. .++.+..+|+ . .++ +..+.|
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~-----~-~lp--~~~~sf 152 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASS-----H-RLP--FADQSL 152 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeec-----c-cCC--CcCCce
Confidence 68999999999999999987653 37999999999999997652 2478888887 2 232 346789
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHH
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWL 291 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l 291 (322)
|+|+++- . | ..++++.++|||||.+++.+. ..+...+++.+
T Consensus 153 D~I~~~~--~----------------~---------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 153 DAIIRIY--A----------------P---------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred eEEEEec--C----------------C---------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 9999842 1 0 123567789999999988654 34445555554
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.7e-10 Score=101.34 Aligned_cols=159 Identities=14% Similarity=0.202 Sum_probs=101.2
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
+|..+.++..+.+..++.....+.+....-.....+++||++|||.|.++..+++..+..+|+.+|+++.+++.|++...
T Consensus 57 ~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 57 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred CceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhh
Confidence 45666666554443333222333332211111113489999999999999999887334689999999999999999875
Q ss_pred Hc--CC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 185 MH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 185 ~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
.. ++ .+|++++.+|. ...+.. ...++||+|+++.+-... |... -+.+.+
T Consensus 137 ~~~~~~~dpRv~vi~~Da-----~~~l~~-~~~~~yDvIi~D~~dp~~--------------~~~~--------L~t~ef 188 (308)
T PLN02366 137 DLAVGFDDPRVNLHIGDG-----VEFLKN-APEGTYDAIIVDSSDPVG--------------PAQE--------LFEKPF 188 (308)
T ss_pred hhccccCCCceEEEEChH-----HHHHhh-ccCCCCCEEEEcCCCCCC--------------chhh--------hhHHHH
Confidence 43 22 35899999998 444432 124689999997532110 0000 124578
Q ss_pred HHHHhccCccCcEEEEEEcC--CCHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNH--DHLDKIKEWL 291 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l 291 (322)
++.+.+.|+|||+++...+. .+.+.+..++
T Consensus 189 ~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~ 220 (308)
T PLN02366 189 FESVARALRPGGVVCTQAESMWLHMDLIEDLI 220 (308)
T ss_pred HHHHHHhcCCCcEEEECcCCcccchHHHHHHH
Confidence 89999999999999875442 3344444443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-10 Score=100.18 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=73.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV--------------ANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l--------------~~~i~~~~~D~~~~~~~~ 206 (322)
.+|||+|||.|..++.+|.. +.+|+|+|+|+.|++.+.. ..++ ..++++.++|+ ++
T Consensus 39 ~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-----~~ 108 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDF-----FA 108 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcc-----cC
Confidence 79999999999999999987 8899999999999998642 1111 34689999999 44
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
..+. ..+.||.|+--- .+..++++. -..+++.+.++|+|||.+++
T Consensus 109 l~~~--~~~~fd~v~D~~------~~~~l~~~~------------------R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 109 LTAA--DLADVDAVYDRA------ALIALPEEM------------------RERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCcc--cCCCeeEEEehH------hHhhCCHHH------------------HHHHHHHHHHHcCCCCeEEE
Confidence 3221 235789988521 122333433 34889999999999997544
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=96.70 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+...+.+.+.+... ..++.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|+++....+..+++.+..+|+
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-- 121 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-- 121 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--
Confidence 34444555555431 112378999999999999999987 4679999999999999999988877656799999987
Q ss_pred cccccccCcCcCCCCeeEEEEcCCC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPY 226 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy 226 (322)
.. ..+.||+|+++-.+
T Consensus 122 ----~~-----~~~~fD~v~~~~~l 137 (230)
T PRK07580 122 ----ES-----LLGRFDTVVCLDVL 137 (230)
T ss_pred ----hh-----ccCCcCEEEEcchh
Confidence 11 24679999986443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.17 E-value=6e-10 Score=92.51 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=69.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+++|+|+++.+++. ..+.....+. .... .+.++||+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-----------~~~~~~~~~~-----~~~~---~~~~~fD~ 81 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-----------RNVVFDNFDA-----QDPP---FPDGSFDL 81 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-----------TTSEEEEEEC-----HTHH---CHSSSEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-----------hhhhhhhhhh-----hhhh---ccccchhh
Confidence 489999999999999999776 4599999999999887 1123333322 1111 24679999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
|+++--+.. ++. ...+++.+.++|||||++++.+...
T Consensus 82 i~~~~~l~~------~~d--------------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 82 IICNDVLEH------LPD--------------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEESSGGG------SSH--------------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HhhHHHHhh------ccc--------------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999733222 111 3589999999999999999977543
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=111.61 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=82.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++.+.... +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.++.. .+...+++++++|+ ...
T Consensus 28 ~il~~l~~~~--~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~-----~~~ 95 (475)
T PLN02336 28 EILSLLPPYE--GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADV-----TSP 95 (475)
T ss_pred HHHhhcCccC--CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecc-----ccc
Confidence 3444444332 368999999999999999987 46899999999999876542 23234689999998 321
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
...++.++||+|+++.++....+ + -...+++++.++|+|||++++
T Consensus 96 -~~~~~~~~fD~I~~~~~l~~l~~------~------------------~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 96 -DLNISDGSVDLIFSNWLLMYLSD------K------------------EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred -ccCCCCCCEEEEehhhhHHhCCH------H------------------HHHHHHHHHHHhcCCCeEEEE
Confidence 11134578999999987654321 1 135789999999999999987
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=98.17 Aligned_cols=160 Identities=12% Similarity=0.115 Sum_probs=98.9
Q ss_pred cCchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 118 PRSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
+.|-...|...++.-+.... .+..+|||+|||+|.++..++.... ...|+++|+++.+.+...+.++.. .++.++
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I 186 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPI 186 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEE
Confidence 45556667666655544321 1346999999999999999999864 458999999987664443333221 248888
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
..|+. .+..-....+.||+|+++-.. | +-.+.++.++.++|||||.+
T Consensus 187 ~~Da~-----~p~~y~~~~~~vDvV~~Dva~-----------------p-----------dq~~il~~na~r~LKpGG~~ 233 (293)
T PTZ00146 187 IEDAR-----YPQKYRMLVPMVDVIFADVAQ-----------------P-----------DQARIVALNAQYFLKNGGHF 233 (293)
T ss_pred ECCcc-----ChhhhhcccCCCCEEEEeCCC-----------------c-----------chHHHHHHHHHHhccCCCEE
Confidence 99983 221001123479999997531 0 01345667889999999999
Q ss_pred EEEEcCCC------HHHH----HHHHHHcCCCCceeeEEEe-cCCCCCCeEEE
Q psy7093 276 FLETNHDH------LDKI----KEWLGICGHHMKLKLVENY-KDFNNKDRFVE 317 (322)
Q Consensus 276 ~~e~~~~~------~~~~----~~~l~~~~~~~~~~~v~~~-~D~~g~~R~~~ 317 (322)
++.+.... ++.+ .+++++.+ |+.++.. -+.+.++..++
T Consensus 234 vI~ika~~id~g~~pe~~f~~ev~~L~~~G----F~~~e~v~L~Py~~~h~~v 282 (293)
T PTZ00146 234 IISIKANCIDSTAKPEVVFASEVQKLKKEG----LKPKEQLTLEPFERDHAVV 282 (293)
T ss_pred EEEEeccccccCCCHHHHHHHHHHHHHHcC----CceEEEEecCCccCCcEEE
Confidence 99653221 1222 36677765 5655433 33344454443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=98.99 Aligned_cols=135 Identities=16% Similarity=0.316 Sum_probs=102.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||-|+|-|+.++..+++ +..+|+.+|.++..+++|+-|--..++ +.+++++.+|+ .+..+ .+.+.+||
T Consensus 135 G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~-----~e~V~-~~~D~sfD 207 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA-----YEVVK-DFDDESFD 207 (287)
T ss_pred CCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH-----HHHHh-cCCccccc
Confidence 489999999999999999988 344999999999999999988654443 23589999998 55543 35678899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC--------HHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH--------LDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~--------~~~~~~~ 290 (322)
+||-+||-.+... .| .-..+.++..+.|+|||.++--+|+.. ...+.+.
T Consensus 208 aIiHDPPRfS~Ag--eL---------------------YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~R 264 (287)
T COG2521 208 AIIHDPPRFSLAG--EL---------------------YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAER 264 (287)
T ss_pred eEeeCCCccchhh--hH---------------------hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHH
Confidence 9999999655332 11 124677788999999999988776432 5668888
Q ss_pred HHHcCCCCceeeEEEecC
Q psy7093 291 LGICGHHMKLKLVENYKD 308 (322)
Q Consensus 291 l~~~~~~~~~~~v~~~~D 308 (322)
|++.| |..+...+-
T Consensus 265 Lr~vG----F~~v~~~~~ 278 (287)
T COG2521 265 LRRVG----FEVVKKVRE 278 (287)
T ss_pred HHhcC----ceeeeeehh
Confidence 88876 676665543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=102.91 Aligned_cols=89 Identities=28% Similarity=0.443 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+.... +.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++.. .++++++++|+
T Consensus 16 ~~~~~iv~~~~~~~--~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~---- 84 (258)
T PRK14896 16 RVVDRIVEYAEDTD--GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDA---- 84 (258)
T ss_pred HHHHHHHHhcCCCC--cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecc----
Confidence 45556666654432 378999999999999999998 56899999999999999988754 24699999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
.+. ....||.|++||||..+
T Consensus 85 -~~~-----~~~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 85 -LKV-----DLPEFNKVVSNLPYQIS 104 (258)
T ss_pred -ccC-----CchhceEEEEcCCcccC
Confidence 432 12358999999999754
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=101.43 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=99.2
Q ss_pred cCeEEEeCCC--CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPP--VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~--~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|+++.. .|.||-.+|. ..+.+.... +.+|+|+++|.|.+++.+|+. ...+|+++|++|.|++..++|
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER--~Rva~~v~~----GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eN 230 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTER--ARVAELVKE----GETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKEN 230 (341)
T ss_pred CCEEEEEchHHeEECCCchHHH--HHHHhhhcC----CCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHH
Confidence 3566777654 4457666654 345555544 279999999999999999998 344599999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.+++..+++|. .+..+ ..+.+|-|++|-|... ..++
T Consensus 231 i~LN~v~~~v~~i~gD~-----rev~~---~~~~aDrIim~~p~~a------------------------------~~fl 272 (341)
T COG2520 231 IRLNKVEGRVEPILGDA-----REVAP---ELGVADRIIMGLPKSA------------------------------HEFL 272 (341)
T ss_pred HHhcCccceeeEEeccH-----HHhhh---ccccCCEEEeCCCCcc------------------------------hhhH
Confidence 99999999999999998 44332 1278999999877532 2577
Q ss_pred HHHhccCccCcEEEE
Q psy7093 263 VFGSNYLKPNGSIFL 277 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~ 277 (322)
..+.+.+++||++-+
T Consensus 273 ~~A~~~~k~~g~iHy 287 (341)
T COG2520 273 PLALELLKDGGIIHY 287 (341)
T ss_pred HHHHHHhhcCcEEEE
Confidence 788899999998755
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=96.10 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=79.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. ++++...|+ .+.... ..++||+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~-----~~~~~~--~~~~~D~ 115 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSV-----EDLAEK--GAKSFDV 115 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCH-----HHhhcC--CCCCccE
Confidence 478999999999999998886 457999999999999999998876653 488888887 322211 1368999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++-.+....+ ...+++.+.+.|+|||.+++..
T Consensus 116 i~~~~~l~~~~~--------------------------~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 116 VTCMEVLEHVPD--------------------------PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEehhHHHhCCC--------------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 999644322211 3478899999999999988754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=93.25 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=66.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.++.++|+|||+|.++++.+. +....|+|+|++++|++.+.+|+....++ +.+.++|+ .+.. +..+.||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdi-----ldle---~~~g~fD 116 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDI-----LDLE---LKGGIFD 116 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeec-----cchh---ccCCeEe
Confidence 348999999999999965544 35678999999999999999999988765 78999999 4332 2458899
Q ss_pred EEEEcCCCCCCC
Q psy7093 219 LVVSNPPYVPSL 230 (322)
Q Consensus 219 lIv~NPPy~~~~ 230 (322)
..|.||||....
T Consensus 117 taviNppFGTk~ 128 (185)
T KOG3420|consen 117 TAVINPPFGTKK 128 (185)
T ss_pred eEEecCCCCccc
Confidence 999999998654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=101.20 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=84.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
|.|.+.+-+..-+...... ++.+|||+|||||..+..+++.++ ..+++++|+|+++++.|++++......-++.++++
T Consensus 44 r~E~~il~~~~~~ia~~~~-~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g 122 (301)
T TIGR03438 44 RTEAAILERHADEIAAATG-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICA 122 (301)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 4455444443333322111 236899999999999999999876 58999999999999999998765332224778899
Q ss_pred cCCCcccccccC--cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 198 EIDSKGQVKNLQ--PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 198 D~~~~~~~~~l~--~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
|+ .+.++ .....+...++++.-+. ..+.++ -...+++.+.++|+|||.+
T Consensus 123 D~-----~~~~~~~~~~~~~~~~~~~~gs~~------~~~~~~------------------e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 123 DF-----TQPLALPPEPAAGRRLGFFPGSTI------GNFTPE------------------EAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred cc-----cchhhhhcccccCCeEEEEecccc------cCCCHH------------------HHHHHHHHHHHhcCCCCEE
Confidence 98 33221 10001122233332221 111121 1358999999999999999
Q ss_pred EEEEc
Q psy7093 276 FLETN 280 (322)
Q Consensus 276 ~~e~~ 280 (322)
++-+.
T Consensus 174 lig~d 178 (301)
T TIGR03438 174 LIGVD 178 (301)
T ss_pred EEecc
Confidence 98664
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-10 Score=104.01 Aligned_cols=90 Identities=26% Similarity=0.369 Sum_probs=68.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++.+.... +.+|||+|||+|.++..++... .+|+|+|+|+.+++.++++... .+++++++|+
T Consensus 30 i~~~i~~~l~~~~--~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~----- 96 (272)
T PRK00274 30 ILDKIVDAAGPQP--GDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA----- 96 (272)
T ss_pred HHHHHHHhcCCCC--cCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh-----
Confidence 4556666655432 3789999999999999999984 4899999999999999987642 4699999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
.+. + +..-.+|.||+||||..+.
T Consensus 97 ~~~-~--~~~~~~~~vv~NlPY~iss 119 (272)
T PRK00274 97 LKV-D--LSELQPLKVVANLPYNITT 119 (272)
T ss_pred hcC-C--HHHcCcceEEEeCCccchH
Confidence 332 1 1111159999999997643
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-10 Score=97.92 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=94.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+||||||.|.+.+.+|...|...++|+|+....+..|.+.+...++. ++.+++.|+ ...+....+.++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA-----~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDA-----VEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCH-----HHHHHhcCCCCCeeEE
Confidence 5899999999999999999999999999999999999999999999986 499999998 4444433455699999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
..|.|=......+.--+ + ++..+++...+.|+|||.+.+-+.+.
T Consensus 124 ~i~FPDPWpKkRH~KRR--------l----------~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 124 YINFPDPWPKKRHHKRR--------L----------TQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EEECCCCCCCccccccc--------c----------CCHHHHHHHHHHccCCCEEEEEecCH
Confidence 99887554443321111 0 14589999999999999998877653
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-09 Score=97.49 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=105.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC-CCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL-EQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~-~~~ 216 (322)
+.+|||+|++.|.=+.++|...++ ..|+++|+|+.-++..++|++++|+.+ +.+++.|. . ..+.... .++
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~-----~-~~~~~~~~~~~ 229 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDA-----R-RLAELLPGGEK 229 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccc-----c-cccccccccCc
Confidence 489999999999999999998765 567999999999999999999999987 78888876 2 1221112 236
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCCh-hHHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG-LNIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEWL 291 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~g-l~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~l 291 (322)
||.|+.++|....+.+..-+.-.+...+... .. ..+-.+++..+.++|||||.|++.++.-. .+.+..++
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i-----~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L 304 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDI-----AELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL 304 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHH
Confidence 9999999998877765433222222222100 01 13357899999999999999999887543 55677777
Q ss_pred HHcC
Q psy7093 292 GICG 295 (322)
Q Consensus 292 ~~~~ 295 (322)
+++.
T Consensus 305 ~~~~ 308 (355)
T COG0144 305 ERHP 308 (355)
T ss_pred HhCC
Confidence 7763
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=103.85 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=104.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|||+|+|.|.-+..+|..+++ ..++++|+++..++..++|+++.|+.+ +.+.+.|. . .+... ..+.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~-----~-~~~~~-~~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDG-----R-VFGAA-LPETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCch-----h-hhhhh-chhhc
Confidence 3479999999999999999998754 589999999999999999999999865 88888887 2 22111 23579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHHHHH
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEWLGI 293 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~l~~ 293 (322)
|.|+.++|......+..-+.-...+.+..-. .=...-++++..+.++|||||.|++.++.-. .+.+..++++
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~----~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNL----EIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHH----HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999988766654432222222111000 0012347999999999999999999888644 3345556666
Q ss_pred cC
Q psy7093 294 CG 295 (322)
Q Consensus 294 ~~ 295 (322)
+.
T Consensus 261 ~~ 262 (470)
T PRK11933 261 YP 262 (470)
T ss_pred CC
Confidence 54
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-09 Score=98.25 Aligned_cols=115 Identities=17% Similarity=0.317 Sum_probs=84.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---VANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+||.+|+|.|..+..+++..+..+|+.||+++..++.|+++....+ -..|++++.+|. ...+.. ..++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da-----~~~L~~--~~~~ 176 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA-----RAELEK--RDEK 176 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh-----HHHHhh--CCCC
Confidence 478999999999999999887667799999999999999999875432 146899999998 665532 3568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH-HHhccCccCcEEEEEEcC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV-FGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~-~~~~~Lk~gG~l~~e~~~ 281 (322)
||+|+++.+- +... .|...|+ .+.+++ .+.+.|+|||++++..+.
T Consensus 177 yDvIi~D~~d-p~~~-----------~~~~~Ly--------t~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 177 FDVIIGDLAD-PVEG-----------GPCYQLY--------TKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ccEEEecCCC-cccc-----------Ccchhhc--------cHHHHHHHHHHhcCCCcEEEEeccC
Confidence 9999998532 1100 0000111 235666 788999999999987654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=93.06 Aligned_cols=131 Identities=20% Similarity=0.348 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHHh----ccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcE
Q psy7093 119 RSETEELIDIITDKL----ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--VANQL 192 (322)
Q Consensus 119 rp~te~lv~~i~~~~----~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l~~~i 192 (322)
+|....+.+++.... .....++.+|||||||+|..++.++...+..+|+.+|.++ +++..+.|++.++ ...++
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 455666777776643 1222245899999999999999999987788999999999 9999999999887 56679
Q ss_pred EEEEccCCCccccccc-CcCcCCCCeeEEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 193 QVFHAEIDSKGQVKNL-QPDLLEQKFDLVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 193 ~~~~~D~~~~~~~~~l-~~~~~~~~fDlIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
.+...||. +.. .......+||+|++ +--| .+ +.+..++.-+.++|+
T Consensus 100 ~v~~L~Wg-----~~~~~~~~~~~~~D~IlasDv~Y----------------~~-----------~~~~~L~~tl~~ll~ 147 (173)
T PF10294_consen 100 SVRPLDWG-----DELDSDLLEPHSFDVILASDVLY----------------DE-----------ELFEPLVRTLKRLLK 147 (173)
T ss_dssp EEEE--TT-----S-HHHHHHS-SSBSEEEEES--S-----------------G-----------GGHHHHHHHHHHHBT
T ss_pred cCcEEEec-----CcccccccccccCCEEEEecccc----------------hH-----------HHHHHHHHHHHHHhC
Confidence 99999983 222 11123468999987 2222 22 125688888999999
Q ss_pred cCcEEEEEEcCC
Q psy7093 271 PNGSIFLETNHD 282 (322)
Q Consensus 271 ~gG~l~~e~~~~ 282 (322)
++|.+++-...+
T Consensus 148 ~~~~vl~~~~~R 159 (173)
T PF10294_consen 148 PNGKVLLAYKRR 159 (173)
T ss_dssp T-TTEEEEEE-S
T ss_pred CCCEEEEEeCEe
Confidence 999877655544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=92.95 Aligned_cols=166 Identities=18% Similarity=0.115 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHH
Q psy7093 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAI 153 (322)
Q Consensus 74 l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~ 153 (322)
..+..+..+-..+++++...++-+.....+++...... -.+++..-+...+-.. ....+|++|||||.-
T Consensus 22 ~~p~~l~nfv~n~~~~~~~~~~~p~~~ft~~yne~~~~---------ykrelFs~i~~~~gk~--~K~~vLEvgcGtG~N 90 (252)
T KOG4300|consen 22 AVPWRLRNFVLNYESRQKSDLLIPNSNFTSIYNEIADS---------YKRELFSGIYYFLGKS--GKGDVLEVGCGTGAN 90 (252)
T ss_pred ccHHHHHHHHHHHHhcCccccccchhHHHHHHHHHHHH---------HHHHHHhhhHHHhccc--CccceEEecccCCCC
Confidence 34455555666666666666654443333333211100 0111222222222222 125689999999976
Q ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCC
Q psy7093 154 TISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ-VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 154 ~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~-~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~ 232 (322)
--..-. -|..+|+++|.++.+-+.|.+.++... +.++. |+.++. +.+++ +.++++|.||+-.-.-+..+
T Consensus 91 fkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~g------e~l~~-l~d~s~DtVV~TlvLCSve~- 160 (252)
T KOG4300|consen 91 FKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADG------ENLPQ-LADGSYDTVVCTLVLCSVED- 160 (252)
T ss_pred cccccC-CCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeech------hcCcc-cccCCeeeEEEEEEEeccCC-
Confidence 433222 267899999999999999999987764 33466 888887 55542 46789999998432222111
Q ss_pred CCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE-EEEcCCCHH
Q psy7093 233 PKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF-LETNHDHLD 285 (322)
Q Consensus 233 ~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~-~e~~~~~~~ 285 (322)
..+.+++..++|+|||.++ +|++..+-.
T Consensus 161 -------------------------~~k~L~e~~rlLRpgG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 161 -------------------------PVKQLNEVRRLLRPGGRIIFIEHVAGEYG 189 (252)
T ss_pred -------------------------HHHHHHHHHHhcCCCcEEEEEecccccch
Confidence 3588999999999999865 477765533
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-10 Score=97.09 Aligned_cols=150 Identities=22% Similarity=0.354 Sum_probs=101.1
Q ss_pred eeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCH
Q psy7093 96 QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSK 173 (322)
Q Consensus 96 ~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~ 173 (322)
.|......+|+.-+..+.+-|++ +.+.+....-+.+......+.+||++|||.|.....+.+..|+ .+|++.|.|+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfk--dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp 107 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFK--DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP 107 (264)
T ss_pred hhhcchhhhhhhhhhhccccccc--hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh
Confidence 34444455677777777776653 3333333333333322222247999999999999999998777 8999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCC
Q psy7093 174 HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253 (322)
Q Consensus 174 ~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~ 253 (322)
.|++..++|..... .++.....|++.+. +......+.+|+|++=. .+.+++++-
T Consensus 108 ~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~----~~~~~~~~svD~it~IF------vLSAi~pek-------------- 161 (264)
T KOG2361|consen 108 RAIELVKKSSGYDE--SRVEAFVWDLTSPS----LKEPPEEGSVDIITLIF------VLSAIHPEK-------------- 161 (264)
T ss_pred HHHHHHHhccccch--hhhcccceeccchh----ccCCCCcCccceEEEEE------EEeccChHH--------------
Confidence 99999998876543 45777777874332 22334567899877621 122233332
Q ss_pred hhHHHHHHHHHHhccCccCcEEEE
Q psy7093 254 GLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 254 gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
..+.++++.++|||||.+++
T Consensus 162 ----~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 162 ----MQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred ----HHHHHHHHHHHhCCCcEEEE
Confidence 45899999999999999988
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-08 Score=90.89 Aligned_cols=182 Identities=21% Similarity=0.222 Sum_probs=112.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCc
Q psy7093 70 KNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~G 149 (322)
....++.++.+.++..+.... |-. -|-..++|.. ++.. +|+ ..-.+.+...+.+- .+++|||||||
T Consensus 60 ~~~~l~~~~~~~l~~~l~~l~---PWR--KGPf~l~gi~--IDtE---WrS--d~KW~rl~p~l~~L--~gk~VLDIGC~ 125 (315)
T PF08003_consen 60 SASDLSAEQRQQLEQLLKALM---PWR--KGPFSLFGIH--IDTE---WRS--DWKWDRLLPHLPDL--KGKRVLDIGCN 125 (315)
T ss_pred CCCCCCHHHHHHHHHHHHhhC---Ccc--cCCcccCCEe--eccc---ccc--cchHHHHHhhhCCc--CCCEEEEecCC
Confidence 355688888888887765543 210 1111222322 2211 122 22334556666544 34899999999
Q ss_pred hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcC-CCCC
Q psy7093 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP-PYVP 228 (322)
Q Consensus 150 sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NP-Py~~ 228 (322)
+|+.+..++.+ +...|+|+|-+...+...+--....+...++.+.. .- .+.++. .+.||+|+|== -|+.
T Consensus 126 nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lg-----vE~Lp~---~~~FDtVF~MGVLYHr 195 (315)
T PF08003_consen 126 NGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LG-----VEDLPN---LGAFDTVFSMGVLYHR 195 (315)
T ss_pred CcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cc-----hhhccc---cCCcCEEEEeeehhcc
Confidence 99999999988 45689999998877655443223334333233321 22 355542 56899999832 2332
Q ss_pred CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc----C--------------------CCH
Q psy7093 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN----H--------------------DHL 284 (322)
Q Consensus 229 ~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~----~--------------------~~~ 284 (322)
.+ .-..+.++.+.|++||.+++|+- . ...
T Consensus 196 r~---------------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~ 248 (315)
T PF08003_consen 196 RS---------------------------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSV 248 (315)
T ss_pred CC---------------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCH
Confidence 22 12578889999999999999871 1 125
Q ss_pred HHHHHHHHHcCCCCceeeEEEe
Q psy7093 285 DKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
..+..++++.| |..|++.
T Consensus 249 ~~L~~wl~r~g----F~~v~~v 266 (315)
T PF08003_consen 249 AALKNWLERAG----FKDVRCV 266 (315)
T ss_pred HHHHHHHHHcC----CceEEEe
Confidence 77899999986 7777765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.7e-10 Score=101.63 Aligned_cols=106 Identities=22% Similarity=0.407 Sum_probs=81.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+.|||+|||||.+++..|+. +..+|+|||.|.-+ +.|++.+..+++.+.|+++++.+ +.+ .++.++.|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkv------Edi--~LP~eKVD 129 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKV------EDI--ELPVEKVD 129 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecce------EEE--ecCcccee
Confidence 4489999999999999999998 57799999999766 99999999999999999999998 333 24567999
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+|||- +......||.. +..++-.--++|+|||.++=
T Consensus 130 iIvSE-----------WMGy~Ll~EsM------------ldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 130 IIVSE-----------WMGYFLLYESM------------LDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EEeeh-----------hhhHHHHHhhh------------hhhhhhhhhhccCCCceEcc
Confidence 99992 11122222321 33555566799999998754
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-09 Score=99.54 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=82.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|||++||||..++.++++.+ ..+|+++|+++.+++.+++|++.+++. ++++.+.|+ ...+.. ...+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da-----~~~l~~--~~~~fDv 117 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDA-----ANVLRY--RNRKFHV 117 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhH-----HHHHHH--hCCCCCE
Confidence 5899999999999999999853 468999999999999999999998876 488999998 444321 1357999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|..|| |... ..++..+.+.+++||++++.
T Consensus 118 IdlDP-fGs~-----------------------------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 118 IDIDP-FGTP-----------------------------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EEeCC-CCCc-----------------------------HHHHHHHHHhcccCCEEEEE
Confidence 99999 4321 15778888999999999885
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=93.72 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=78.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH------------HcCCCCcEEEEEccCCCcccccc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV------------MHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~------------~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
+.+||++|||.|.-+..||.. +.+|+|+|+|+.|++.+.+... ... ..+++++++|+ ++.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~-----f~l 115 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADI-----FNL 115 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccC-----cCC
Confidence 379999999999999999998 8899999999999999865210 011 23589999999 553
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
-+..-..++||+|+- ...+..++++.+ .++++.+.++|+|||.+++.+
T Consensus 116 ~~~~~~~~~fD~VyD------ra~~~Alpp~~R------------------~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 116 PKIANNLPVFDIWYD------RGAYIALPNDLR------------------TNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CccccccCCcCeeee------ehhHhcCCHHHH------------------HHHHHHHHHHhCCCcEEEEEE
Confidence 211112368999875 233445556554 488999999999999876643
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=104.56 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=106.0
Q ss_pred CCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy7093 113 PPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNV 188 (322)
Q Consensus 113 ~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~~~l 188 (322)
...|+||..++.+++.+ ... +..+|+|.+||||.+.+..++.+. ...++|.|+++....+|+.|.-.++.
T Consensus 166 GEfyTP~~v~~liv~~l----~~~--~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi 239 (489)
T COG0286 166 GEFYTPREVSELIVELL----DPE--PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI 239 (489)
T ss_pred CccCChHHHHHHHHHHc----CCC--CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC
Confidence 34667877666655544 322 226899999999999888887753 26799999999999999999999987
Q ss_pred CCcEEEEEccCCCcccccccCc--CcCCCCeeEEEEcCCCCCCCCCCCCChhh--hcccccccccCCCChhHHHHHHHHH
Q psy7093 189 ANQLQVFHAEIDSKGQVKNLQP--DLLEQKFDLVVSNPPYVPSLDIPKLEPEI--ALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 189 ~~~i~~~~~D~~~~~~~~~l~~--~~~~~~fDlIv~NPPy~~~~~~~~l~~~v--~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
...+....+|. +..... ....++||.|++||||............. .++.+...+.....+ +..++..
T Consensus 240 ~~~~~i~~~dt-----l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~af~~h 311 (489)
T COG0286 240 EGDANIRHGDT-----LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA---DLAFLQH 311 (489)
T ss_pred Ccccccccccc-----ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch---HHHHHHH
Confidence 64456677776 332211 11346899999999997332222111111 111111111111222 2578889
Q ss_pred HhccCccCcEEEEEEcCC------CHHHHHHHHHHc
Q psy7093 265 GSNYLKPNGSIFLETNHD------HLDKIKEWLGIC 294 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~~------~~~~~~~~l~~~ 294 (322)
+...|+|||...+.+..+ -...+++.+-+.
T Consensus 312 ~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~ 347 (489)
T COG0286 312 ILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLED 347 (489)
T ss_pred HHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhc
Confidence 999999998877665431 245566555443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=95.60 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=56.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
+.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|+++....+ +++...+. +.++. ..+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~------~~l~~--~~~ 128 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVS------DELVA--EGE 128 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEec------ccccc--cCC
Confidence 3799999999999998887642 35699999999999999988764333 45555544 12221 356
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+||+|++|..++.
T Consensus 129 ~fD~V~~~~~lhh 141 (232)
T PRK06202 129 RFDVVTSNHFLHH 141 (232)
T ss_pred CccEEEECCeeec
Confidence 8999999866543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=88.99 Aligned_cols=139 Identities=20% Similarity=0.283 Sum_probs=101.1
Q ss_pred EEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEE
Q psy7093 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~ 222 (322)
|.|+||--|.+++.|.+.....+++++|+++..++.|++|+...++.+++++..+|- ++.++ +....|.||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG-----L~~l~---~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG-----LEVLK---PGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG-----GGG-----GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc-----ccccC---CCCCCCEEEE
Confidence 689999999999999999666789999999999999999999999999999999998 66654 2233677765
Q ss_pred cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceee
Q psy7093 223 NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKL 302 (322)
Q Consensus 223 NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~ 302 (322)
+|..| ..+..|++.....++....+++ .+..+...+++++.++|+ .+..
T Consensus 73 ---------------------------AGMGG-~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~~gf--~I~~ 121 (205)
T PF04816_consen 73 ---------------------------AGMGG-ELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYENGF--EIID 121 (205)
T ss_dssp ---------------------------EEE-H-HHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHHTTE--EEEE
T ss_pred ---------------------------ecCCH-HHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHHCCC--EEEE
Confidence 23333 3477899988888877667776 677889999999999985 4555
Q ss_pred EEEecCCCCCCeEEEEEE
Q psy7093 303 VENYKDFNNKDRFVELKL 320 (322)
Q Consensus 303 v~~~~D~~g~~R~~~~~~ 320 (322)
-.+..|--..+-++.+.+
T Consensus 122 E~lv~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 122 EDLVEENGRFYEIIVAER 139 (205)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred eEEEeECCEEEEEEEEEe
Confidence 556666655555555554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=92.72 Aligned_cols=48 Identities=19% Similarity=0.386 Sum_probs=44.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
.+..+||+||-+|.+++++|+.+....|.|+||++..++.|++|++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 447899999999999999999999899999999999999999997654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=94.24 Aligned_cols=90 Identities=30% Similarity=0.399 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +.+|||+|||+|.++..+++.. ..|+++|+++.+++.++.+... ..+++++++|+
T Consensus 15 ~~i~~~i~~~~~~~~--~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~--- 84 (253)
T TIGR00755 15 ESVIQKIVEAANVLE--GDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDA--- 84 (253)
T ss_pred HHHHHHHHHhcCCCC--cCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECch---
Confidence 345566666665432 3799999999999999999985 4699999999999999987643 34699999998
Q ss_pred ccccccCcCcCCCCee---EEEEcCCCCCC
Q psy7093 203 GQVKNLQPDLLEQKFD---LVVSNPPYVPS 229 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fD---lIv~NPPy~~~ 229 (322)
.+. + ...+| +|++|+||...
T Consensus 85 --~~~-~----~~~~d~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 85 --LKV-D----LPDFPKQLKVVSNLPYNIS 107 (253)
T ss_pred --hcC-C----hhHcCCcceEEEcCChhhH
Confidence 332 1 12455 99999999753
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-08 Score=87.51 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=127.4
Q ss_pred cCCCceeEecceeecCeEEEeCCCCcc----cCchhHHH-------------HHHHHHHhccCCCCCCeEEEEcCchhHH
Q psy7093 91 ARMPVQYIIKEWNFRDLTLKMTPPVFI----PRSETEEL-------------IDIITDKLESSNHTPTRMIEIGSGTGAI 153 (322)
Q Consensus 91 ~~~p~~yi~g~~~f~~~~~~v~~~~~i----prp~te~l-------------v~~i~~~~~~~~~~~~~iLDlg~GsG~~ 153 (322)
.-.|-.-|+|+ +||..+..+.|-|+ |.||...+ +..++.++... ++.+|++-|+|||.+
T Consensus 44 Ga~~h~~iIGK--~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i~--PGsvV~EsGTGSGSl 119 (314)
T KOG2915|consen 44 GALPHSDIIGK--PYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEIR--PGSVVLESGTGSGSL 119 (314)
T ss_pred cccchhheecC--CccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhcCC--CCCEEEecCCCcchH
Confidence 35666778887 68888888877333 44443333 34556666655 348999999999999
Q ss_pred HHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCC
Q psy7093 154 TISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 154 ~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~ 232 (322)
+.++++.. |..+++..|......+.|.+..+.+++.+++++.+-|+...+. ......+|.|+.+.|-..
T Consensus 120 ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF------~~ks~~aDaVFLDlPaPw---- 189 (314)
T KOG2915|consen 120 SHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF------LIKSLKADAVFLDLPAPW---- 189 (314)
T ss_pred HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc------cccccccceEEEcCCChh----
Confidence 99999986 6679999999999999999999999999999999999832111 112568999999876321
Q ss_pred CCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHcCCCCceeeEEEecCCC
Q psy7093 233 PKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGICGHHMKLKLVENYKDFN 310 (322)
Q Consensus 233 ~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~~~~~~~~~v~~~~D~~ 310 (322)
..+..+...||.+|.-++.+.+ .|-+...+.+.+.| |..+.+..++.
T Consensus 190 ---------------------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~g----f~~i~~vEv~~ 238 (314)
T KOG2915|consen 190 ---------------------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLG----FIEIETVEVLL 238 (314)
T ss_pred ---------------------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCC----CceEEEEEeeh
Confidence 2344566688888865555543 66778888888886 56666666665
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=87.85 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+.+..++.+....+.+.-|||||||||.-+..+... +...+|+|+|+.|++.|.+. .. + -.+..+|+
T Consensus 35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~--e~--e--gdlil~DM---- 102 (270)
T KOG1541|consen 35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER--EL--E--GDLILCDM---- 102 (270)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh--hh--h--cCeeeeec----
Confidence 3455666666544334578999999999988877766 68899999999999999862 22 1 24677887
Q ss_pred cccccCcCcCCCCeeEEEEc--CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~N--PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
-+.++ +..+.||-+|+= --|....+ -..+.|... +..|+.....+|++|+..++..-+
T Consensus 103 -G~Glp--frpGtFDg~ISISAvQWLcnA~-------~s~~~P~~R----------l~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 103 -GEGLP--FRPGTFDGVISISAVQWLCNAD-------KSLHVPKKR----------LLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred -CCCCC--CCCCccceEEEeeeeeeecccC-------ccccChHHH----------HHHHhhhhhhhhccCceeEEEecc
Confidence 55554 567899977761 11111111 112333332 357888889999999999998876
Q ss_pred CCHHHHHHHHH
Q psy7093 282 DHLDKIKEWLG 292 (322)
Q Consensus 282 ~~~~~~~~~l~ 292 (322)
.....+.-++.
T Consensus 163 en~~q~d~i~~ 173 (270)
T KOG1541|consen 163 ENEAQIDMIMQ 173 (270)
T ss_pred cchHHHHHHHH
Confidence 55554444443
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-08 Score=87.68 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
+.++...+..+... ..+.+|||++||.|.-.+-+....|. .+|...|.|+..++..++-++..|+.+-++|.++|++
T Consensus 120 ~~~i~~ai~~L~~~-g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 120 EELIRQAIARLREQ-GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHHhc-CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 33444444444432 24589999999999998888888876 7999999999999999999999999987799999995
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+...+..+ ....+++|..--|--..+ -+..+..+....+.+.|||++++.--
T Consensus 199 d~~~l~~l-----~p~P~l~iVsGL~ElF~D-----------------------n~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 199 DRDSLAAL-----DPAPTLAIVSGLYELFPD-----------------------NDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred CHhHhhcc-----CCCCCEEEEecchhhCCc-----------------------HHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 43333222 335677776333222111 12356778888999999999998321
Q ss_pred --CCCH-----------------------HHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEE
Q psy7093 281 --HDHL-----------------------DKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319 (322)
Q Consensus 281 --~~~~-----------------------~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~ 319 (322)
+.|. .++.++.+.+| |..++.+-|..|+--+-.++
T Consensus 251 PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG----F~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 251 PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG----FEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred CCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC----CchhhheeccCCceEEEeec
Confidence 1222 34445555553 67777777888875555554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-08 Score=84.96 Aligned_cols=163 Identities=17% Similarity=0.247 Sum_probs=102.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+.+.+.+.+.... .+|||||||||.-+..+|..+|.....-.|.++..+...+..+...++++-..-+..|+..+.-
T Consensus 14 Il~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 14 ILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 3444444454431 2599999999999999999999999999999999987777777776665533345566521100
Q ss_pred ccccCcCcCCCCeeEEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-----
Q psy7093 205 VKNLQPDLLEQKFDLVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE----- 278 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e----- 278 (322)
--..+.....+.||.|++ |.--+ ++- ...+.+++.+.++|++||.|++-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI-------~p~------------------~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHI-------SPW------------------SAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred ccccccccCCCCcceeeehhHHHh-------cCH------------------HHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 000000113468999998 32111 111 12568999999999999999871
Q ss_pred ---E-------------------cCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 279 ---T-------------------NHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 279 ---~-------------------~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+ |-+.-+.+.++..++|. ..+ -..|+--+-++++++|
T Consensus 146 ~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL----~l~-~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 146 DGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL----ELE-EDIDMPANNLLLVFRK 204 (204)
T ss_pred CCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC----ccC-cccccCCCCeEEEEeC
Confidence 1 22334555556565552 222 2346677777777665
|
The function of this family is unknown. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-08 Score=82.76 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcc---CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 123 EELIDIITDKLES---SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 123 e~lv~~i~~~~~~---~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
+.+...+++.+.. ......+++|+|+|.|.-++.+|-.+|+.+++.+|.+..-+...+.-+..++++| ++++++++
T Consensus 29 ~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~ 107 (184)
T PF02527_consen 29 EIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRA 107 (184)
T ss_dssp HHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-H
T ss_pred HHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeee
Confidence 3334456555432 1112238999999999999999999999999999999999999999999999975 99999998
Q ss_pred CCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ . ....+||+|++= ...| ...+++.+..+|++||.+++--
T Consensus 108 -----E~--~--~~~~~fd~v~aR-----------------Av~~-------------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 108 -----EE--P--EYRESFDVVTAR-----------------AVAP-------------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -----HH--T--TTTT-EEEEEEE-----------------SSSS-------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----cc--c--ccCCCccEEEee-----------------hhcC-------------HHHHHHHHHHhcCCCCEEEEEc
Confidence 33 1 246789999992 1111 4578899999999999999988
Q ss_pred cCCCHHHHHHHHHH
Q psy7093 280 NHDHLDKIKEWLGI 293 (322)
Q Consensus 280 ~~~~~~~~~~~l~~ 293 (322)
|....+++.+.-..
T Consensus 149 G~~~~~El~~~~~~ 162 (184)
T PF02527_consen 149 GPDAEEELEEAKKA 162 (184)
T ss_dssp SS--HHHHHTHHHH
T ss_pred CCChHHHHHHHHhH
Confidence 98887777665443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=81.85 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=120.1
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+.+.++.. .++.|+||-.|++++.+.+..+...++++|+++..++.|.+|+..+++.+++++..+|. +.
T Consensus 8 ~~va~~V~~~----~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-----l~ 78 (226)
T COG2384 8 TTVANLVKQG----ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-----LA 78 (226)
T ss_pred HHHHHHHHcC----CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-----cc
Confidence 3445555543 45999999999999999999999999999999999999999999999999999999998 66
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHH
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDK 286 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~ 286 (322)
.+. .+..+|.|+. +|..| ..++.|+++..+.|+.--.+++ -++.+...
T Consensus 79 ~l~---~~d~~d~ivI---------------------------AGMGG-~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~ 126 (226)
T COG2384 79 VLE---LEDEIDVIVI---------------------------AGMGG-TLIREILEEGKEKLKGVERLIL-QPNIHTYE 126 (226)
T ss_pred ccC---ccCCcCEEEE---------------------------eCCcH-HHHHHHHHHhhhhhcCcceEEE-CCCCCHHH
Confidence 653 3457888776 33444 3477899999998875555665 67888999
Q ss_pred HHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 287 IKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 287 ~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+++++..++| .+..-.+..+-...+-++++.+
T Consensus 127 LR~~L~~~~~--~I~~E~ileE~~kiYEIlv~e~ 158 (226)
T COG2384 127 LREWLSANSY--EIKAETILEEDGKIYEILVVEK 158 (226)
T ss_pred HHHHHHhCCc--eeeeeeeecccCeEEEEEEEec
Confidence 9999999986 4556667777766777776665
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-08 Score=85.62 Aligned_cols=121 Identities=16% Similarity=0.273 Sum_probs=97.9
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|+.-.++..+++.+.. +++||+|+-||+-++++|..+|. .+|+++|+++.+.+++.+-.+..++..+|+++++
T Consensus 58 ~~d~g~fl~~li~~~~a-----k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g 132 (237)
T KOG1663|consen 58 GPDKGQFLQMLIRLLNA-----KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG 132 (237)
T ss_pred ChHHHHHHHHHHHHhCC-----ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec
Confidence 34556677777776654 78999999999999999999874 6999999999999999998999999999999999
Q ss_pred cCCCcccccccCc---CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQP---DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~---~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
+. .+.+.+ ....+.||+++.+- +. +.|....+++.+++++||+
T Consensus 133 ~a-----~esLd~l~~~~~~~tfDfaFvDa------dK-----------------------~nY~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 133 PA-----LESLDELLADGESGTFDFAFVDA------DK-----------------------DNYSNYYERLLRLLRVGGV 178 (237)
T ss_pred ch-----hhhHHHHHhcCCCCceeEEEEcc------ch-----------------------HHHHHHHHHHHhhcccccE
Confidence 98 554433 22457899999852 00 1256888999999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 179 i~~D 182 (237)
T KOG1663|consen 179 IVVD 182 (237)
T ss_pred EEEe
Confidence 9884
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=97.11 Aligned_cols=104 Identities=18% Similarity=0.383 Sum_probs=72.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
...|+|+|||+|.++...++.. ...+|++||.++.|....++.++.++..++|+++++|+ +.+. ...
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~------r~v~---lpe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM------REVE---LPE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T------TTSC---HSS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc------cCCC---CCC
Confidence 3689999999999987776652 34699999999999988887778888888999999998 3332 245
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
++|+|||-. ... +|...- .-..+..+.++|||||+++
T Consensus 258 kvDIIVSEl--------------------LGs-fg~nEl---~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSEL--------------------LGS-FGDNEL---SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE-----------------------BT-TBTTTS---HHHHHHHGGGGEEEEEEEE
T ss_pred ceeEEEEec--------------------cCC-cccccc---CHHHHHHHHhhcCCCCEEe
Confidence 899999932 111 111111 2245677889999999764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-08 Score=97.83 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=98.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
...+||||||.|.+.+.+|..+|+..++|+|++...+..|.+.+...++.| +.+++.|+ ..+...++.+++|.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~------~~~~~~~~~~sv~~ 420 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNL------DLILNDLPNNSLDG 420 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCH------HHHHHhcCcccccE
Confidence 368999999999999999999999999999999999998888888888765 88888876 33333356778999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-HHHHHHHHHHcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-LDKIKEWLGICG 295 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-~~~~~~~l~~~~ 295 (322)
|..|.|=.+.+..+.-.. + +...+++...+.|+|||.+.+-+.... ...+.+.+..++
T Consensus 421 i~i~FPDPWpKkrh~krR-l-----------------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKR-I-----------------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNG 479 (506)
T ss_pred EEEECCCCCCCCCCcccc-c-----------------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCC
Confidence 999877554443221111 0 134789999999999999988775433 444555666554
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-08 Score=85.43 Aligned_cols=68 Identities=18% Similarity=0.416 Sum_probs=56.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||.|.+...+... .+..++|+|++++.+..+..+ | +.++++|+ .+.+. .+++++||.|
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dl-----d~gL~-~f~d~sFD~V 79 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDL-----DEGLA-DFPDQSFDYV 79 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----C----CCEEECCH-----HHhHh-hCCCCCccEE
Confidence 79999999999999888886 589999999999987766533 3 67899999 45554 3578899999
Q ss_pred EEc
Q psy7093 221 VSN 223 (322)
Q Consensus 221 v~N 223 (322)
|.+
T Consensus 80 Ils 82 (193)
T PF07021_consen 80 ILS 82 (193)
T ss_pred ehH
Confidence 984
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=7e-09 Score=88.83 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=79.5
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.|.+..+.+...+..... ...|+|..||.|.-++..|.. ...|+++|++|.-+..|++|++-+|+++||+|++
T Consensus 77 Tpe~ia~~iA~~v~~~~~-----~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMN-----AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred ccHHHHHHHHHHHHHhcC-----cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 355666666666555442 168999999999999999988 5679999999999999999999999999999999
Q ss_pred ccCCCcccccccCc-CcCCCCeeEEEEcCCCCCCC
Q psy7093 197 AEIDSKGQVKNLQP-DLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 197 ~D~~~~~~~~~l~~-~~~~~~fDlIv~NPPy~~~~ 230 (322)
+|+ ++.... .+....+|+|...|||..++
T Consensus 150 GD~-----ld~~~~lq~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 150 GDF-----LDLASKLKADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred chH-----HHHHHHHhhhhheeeeeecCCCCCCcc
Confidence 999 443211 12344688999999987544
|
|
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=92.45 Aligned_cols=122 Identities=18% Similarity=0.359 Sum_probs=86.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.++.|||+|||||.++...+.. +..+|++||.| ++.+.|++-++.+++.+||.++.+.+ +.+. ..++.|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi------Edie---LPEk~D 245 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI------EDIE---LPEKVD 245 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc------cccc---Cchhcc
Confidence 3478999999999999998887 67799999998 57899999998889999999999988 3322 246899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC------CHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD------HLDKIKEWLG 292 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~------~~~~~~~~l~ 292 (322)
+||+.|- ..|--..+. ++.. -.++++|+|+|.++=.+|.- .+....+.+.
T Consensus 246 viISEPM-------G~mL~NERM----------------LEsY-l~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~n 301 (517)
T KOG1500|consen 246 VIISEPM-------GYMLVNERM----------------LESY-LHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFN 301 (517)
T ss_pred EEEeccc-------hhhhhhHHH----------------HHHH-HHHHhhcCCCCcccCcccceeecccchHHHHHHHHh
Confidence 9999763 111111111 1122 24569999999988766543 3444455555
Q ss_pred HcC
Q psy7093 293 ICG 295 (322)
Q Consensus 293 ~~~ 295 (322)
+..
T Consensus 302 kAn 304 (517)
T KOG1500|consen 302 KAN 304 (517)
T ss_pred hhh
Confidence 543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=86.31 Aligned_cols=74 Identities=15% Similarity=0.372 Sum_probs=56.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++.. ....++|+|+|+.+++.|+.+ +++++++|+ .+.++. +..++||+|
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~-----~~~l~~-~~~~sfD~V 79 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVAR--------GVNVIQGDL-----DEGLEA-FPDKSFDYV 79 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEh-----hhcccc-cCCCCcCEE
Confidence 68999999999999988876 356889999999999887642 267888887 332211 245689999
Q ss_pred EEcCCCCCC
Q psy7093 221 VSNPPYVPS 229 (322)
Q Consensus 221 v~NPPy~~~ 229 (322)
++|.++...
T Consensus 80 i~~~~l~~~ 88 (194)
T TIGR02081 80 ILSQTLQAT 88 (194)
T ss_pred EEhhHhHcC
Confidence 999876543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.6e-08 Score=85.95 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=82.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcC----------CCCcEEEEEccCCCcccccccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ-NAVMHN----------VANQLQVFHAEIDSKGQVKNLQ 209 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~-n~~~~~----------l~~~i~~~~~D~~~~~~~~~l~ 209 (322)
.+||.+|||.|.-...+|.. +.+|+|+|+|+.|++.+.+ |..... -.++|+++++|+ |..-+
T Consensus 39 ~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf-----F~l~~ 111 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF-----FELPP 111 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T-----TTGGG
T ss_pred CeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc-----ccCCh
Confidence 69999999999999999998 7899999999999999843 221110 123689999999 65322
Q ss_pred cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-E--------c
Q psy7093 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-T--------N 280 (322)
Q Consensus 210 ~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~--------~ 280 (322)
. ..++||+|+= ...+..++++.+ .+..+.+.++|+|||.+++. + |
T Consensus 112 ~--~~g~fD~iyD------r~~l~Alpp~~R------------------~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~G 165 (218)
T PF05724_consen 112 E--DVGKFDLIYD------RTFLCALPPEMR------------------ERYAQQLASLLKPGGRGLLITLEYPQGEMEG 165 (218)
T ss_dssp S--CHHSEEEEEE------CSSTTTS-GGGH------------------HHHHHHHHHCEEEEEEEEEEEEES-CSCSSS
T ss_pred h--hcCCceEEEE------ecccccCCHHHH------------------HHHHHHHHHHhCCCCcEEEEEEEcCCcCCCC
Confidence 1 2358999986 334455666654 48899999999999994332 2 1
Q ss_pred C---CCHHHHHHHHHH
Q psy7093 281 H---DHLDKIKEWLGI 293 (322)
Q Consensus 281 ~---~~~~~~~~~l~~ 293 (322)
+ -..+++.+++..
T Consensus 166 PPf~v~~~ev~~l~~~ 181 (218)
T PF05724_consen 166 PPFSVTEEEVRELFGP 181 (218)
T ss_dssp SS----HHHHHHHHTT
T ss_pred cCCCCCHHHHHHHhcC
Confidence 1 125677777763
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=86.84 Aligned_cols=122 Identities=14% Similarity=0.251 Sum_probs=87.1
Q ss_pred ecCeEE-EeCCCCcc-cCchhHHHHHHHHHHhccCC----CCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHH
Q psy7093 104 FRDLTL-KMTPPVFI-PRSETEELIDIITDKLESSN----HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACD 177 (322)
Q Consensus 104 f~~~~~-~v~~~~~i-prp~te~lv~~i~~~~~~~~----~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~ 177 (322)
||+.++ .+.++.+- |-|....++..+.+.+...+ .+..++||+|+|.-||--.+..+--+++.+|.|+++.+++
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~ 116 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLS 116 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHH
Confidence 566663 34455555 56788888888887775432 1446899999999999776666555789999999999999
Q ss_pred HHHHHHHHc-CCCCcEEEEEccCCCccccccc-CcCc-CCCCeeEEEEcCCCCCCC
Q psy7093 178 LTEQNAVMH-NVANQLQVFHAEIDSKGQVKNL-QPDL-LEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 178 ~A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l-~~~~-~~~~fDlIv~NPPy~~~~ 230 (322)
.|+.++..+ ++...|++....= -..+ +... ..+.||+++|||||+.+.
T Consensus 117 sA~~ii~~N~~l~~~I~lr~qk~-----~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 117 SAKAIISANPGLERAIRLRRQKD-----SDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred HHHHHHHcCcchhhheeEEeccC-----ccccccccccccceeeeEecCCCcchhH
Confidence 999999887 7777777764321 1111 1111 256899999999998654
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-08 Score=86.44 Aligned_cols=94 Identities=19% Similarity=0.380 Sum_probs=72.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|+|+|+|.++..+++++|+.+++..|. |..++.+++ .+|++++.+|+ ++.+ +. +|++
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~-----f~~~----P~--~D~~ 162 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDF-----FDPL----PV--ADVY 162 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-T-----TTCC----SS--ESEE
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccH-----Hhhh----cc--ccce
Confidence 6899999999999999999999999999999 778888876 57899999999 6544 23 9999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC--cEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN--GSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g--G~l~~ 277 (322)
+..- -++..+++. ...+++++.+.|+|| |.+++
T Consensus 163 ~l~~------vLh~~~d~~------------------~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 163 LLRH------VLHDWSDED------------------CVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EEES------SGGGS-HHH------------------HHHHHHHHHHHSEECTTEEEEE
T ss_pred eeeh------hhhhcchHH------------------HHHHHHHHHHHhCCCCCCeEEE
Confidence 8732 222223322 468999999999999 88765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-07 Score=79.92 Aligned_cols=186 Identities=20% Similarity=0.261 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCC--C-CCeEEEEcCc
Q psy7093 73 ELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNH--T-PTRMIEIGSG 149 (322)
Q Consensus 73 ~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~--~-~~~iLDlg~G 149 (322)
..+.++.+++..+++-..+ |+..+... -++-..+.+...+++.+..... . +.+++|+|+|
T Consensus 15 ~~~~~~~~~l~~Y~~lL~~-------------wN~~~NLt----~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSG 77 (215)
T COG0357 15 SVTEEQLEKLEAYVELLLK-------------WNKAYNLT----AIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSG 77 (215)
T ss_pred CccHHHHHHHHHHHHHHHH-------------hhHhcCCC----CCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCC
Confidence 3566777777777665553 22222111 1244445566666665543211 1 3799999999
Q ss_pred hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC-eeEEEEcCCCCC
Q psy7093 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK-FDLVVSNPPYVP 228 (322)
Q Consensus 150 sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~-fDlIv~NPPy~~ 228 (322)
.|.-++.+|-.+|+.+|+.+|....-+...+.-...++++| ++++++.+ +... ...+ ||+|+|-
T Consensus 78 aGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~Ra------E~~~---~~~~~~D~vtsR----- 142 (215)
T COG0357 78 AGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRA------EEFG---QEKKQYDVVTSR----- 142 (215)
T ss_pred CCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhH------hhcc---cccccCcEEEee-----
Confidence 99999999988999999999999999999998888999875 99999998 3322 1223 9999982
Q ss_pred CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc---CCCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN---HDHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 229 ~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~---~~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
. +.-...+.+-+..++++||.+++-.+ .+.-..........+. .+..+..
T Consensus 143 --A-----------------------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~--~~~~~~~ 195 (215)
T COG0357 143 --A-----------------------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGG--QVEKVFS 195 (215)
T ss_pred --h-----------------------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcC--cEEEEEE
Confidence 0 11134788889999999998754333 3444444444444432 2444444
Q ss_pred ecCCCCC-CeEEE
Q psy7093 306 YKDFNNK-DRFVE 317 (322)
Q Consensus 306 ~~D~~g~-~R~~~ 317 (322)
.....+. +|.++
T Consensus 196 ~~~p~~~~~r~l~ 208 (215)
T COG0357 196 LTVPELDGERHLV 208 (215)
T ss_pred eecCCCCCceEEE
Confidence 4443332 34444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-09 Score=90.57 Aligned_cols=133 Identities=22% Similarity=0.387 Sum_probs=87.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
++..++........ .++||+|||||..+..+-.. ..+.+|+|+|..|++.|.+. ++-+ ++.++|+
T Consensus 113 ~l~emI~~~~~g~F--~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea----- 177 (287)
T COG4976 113 LLAEMIGKADLGPF--RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEA----- 177 (287)
T ss_pred HHHHHHHhccCCcc--ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc----cchH--HHHHHHH-----
Confidence 34444444443323 78999999999999988777 56899999999999998764 2111 2233443
Q ss_pred ccccCcCcCCCCeeEEEEc--CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc--
Q psy7093 205 VKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-- 280 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~N--PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-- 280 (322)
...+. .....+||+|++- .||.-. +..++--+..+|+|||.+.|.+.
T Consensus 178 ~~Fl~-~~~~er~DLi~AaDVl~YlG~----------------------------Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 178 VLFLE-DLTQERFDLIVAADVLPYLGA----------------------------LEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHhh-hccCCcccchhhhhHHHhhcc----------------------------hhhHHHHHHHhcCCCceEEEEeccc
Confidence 11111 1245689999983 344321 23678888999999999998651
Q ss_pred ---------CC-----CHHHHHHHHHHcCCCCceeeEEE
Q psy7093 281 ---------HD-----HLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 281 ---------~~-----~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
+. ....++..+...| |..+++
T Consensus 229 ~~~~~f~l~ps~RyAH~~~YVr~~l~~~G----l~~i~~ 263 (287)
T COG4976 229 PDDGGFVLGPSQRYAHSESYVRALLAASG----LEVIAI 263 (287)
T ss_pred CCCCCeecchhhhhccchHHHHHHHHhcC----ceEEEe
Confidence 11 1466888888876 555544
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-08 Score=86.65 Aligned_cols=94 Identities=30% Similarity=0.416 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++...... +..|||+|.|||.++..+... +++|+|+|+++.++....+..+....+++.+++.+|+
T Consensus 45 ~v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---- 116 (315)
T KOG0820|consen 45 LVIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---- 116 (315)
T ss_pred HHHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc----
Confidence 45566666655553 379999999999999999998 8999999999999998888877666668899999999
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~ 231 (322)
+.. +...||.+|+|-||--+..
T Consensus 117 -lK~-----d~P~fd~cVsNlPyqISSp 138 (315)
T KOG0820|consen 117 -LKT-----DLPRFDGCVSNLPYQISSP 138 (315)
T ss_pred -ccC-----CCcccceeeccCCccccCH
Confidence 432 3357999999999965443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-08 Score=87.72 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+..|||+|+|.|.=+..++...+ ...+++.|+++..+...+.|+++.|..+ +.+...|. ....+ ......||
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~-----~~~~~-~~~~~~fd 158 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADA-----RKLDP-KKPESKFD 158 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHH-----HHHHH-HHHTTTEE
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecc-----ccccc-cccccccc
Confidence 37899999999999999999876 6799999999999999999999999875 77777776 22211 11234699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC----ccCcEEEEEEcC----CCHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL----KPNGSIFLETNH----DHLDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L----k~gG~l~~e~~~----~~~~~~~~~ 290 (322)
.|+.++|-.....+..-+.-.....|..- +.=..+-+++++.+.+++ +|||.+++.++. .....+..+
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~f 234 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDI----EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKF 234 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHH----HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHH
T ss_pred hhhcCCCccchhhhhhccchhhccccccc----chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHH
Confidence 99999998776544432221111111000 000233579999999999 999999998863 446677778
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
++++.
T Consensus 235 l~~~~ 239 (283)
T PF01189_consen 235 LKRHP 239 (283)
T ss_dssp HHHST
T ss_pred HHhCC
Confidence 88763
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=81.33 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHc-------------
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMH------------- 186 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~------------- 186 (322)
..++.+..+..+... .+-++.|.|||+|++...+.-.++. ..|+|.|+++++++.|++|+..+
T Consensus 36 AsEi~qR~l~~l~~~--~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~ 113 (246)
T PF11599_consen 36 ASEIFQRALHYLEGK--GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR 113 (246)
T ss_dssp HHHHHHHHHCTSSS---S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC--CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence 344445555555443 2378999999999998888877554 48999999999999999994322
Q ss_pred ----------------------------CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChh
Q psy7093 187 ----------------------------NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 187 ----------------------------~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
|-.....+.+.|++++....... .....|+||.+-||....++..
T Consensus 114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~~~~diViTDlPYG~~t~W~g---- 186 (246)
T PF11599_consen 114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AGFTPDIVITDLPYGEMTSWQG---- 186 (246)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT---SEEEEE--CCCSSSTTS----
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cCCCCCEEEecCCCcccccccC----
Confidence 11112567888884433322221 2234699999999987666432
Q ss_pred hhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 239 v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+.+-+-...++......|-+++++++ +...
T Consensus 187 -------------~~~~~p~~~ml~~l~~vLp~~sVV~v-~~k~ 216 (246)
T PF11599_consen 187 -------------EGSGGPVAQMLNSLAPVLPERSVVAV-SDKG 216 (246)
T ss_dssp ----------------HHHHHHHHHHHHCCS-TT-EEEE-EESS
T ss_pred -------------CCCCCcHHHHHHHHHhhCCCCcEEEE-ecCC
Confidence 12222357899999999944444444 4433
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.6e-07 Score=79.49 Aligned_cols=131 Identities=21% Similarity=0.358 Sum_probs=80.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++||-+|-. =..++++|...+..+|+.+|+++..++..++.+++.|++ ++.++.|+ ..++|..+ .++||+
T Consensus 45 gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~Dl-----R~~LP~~~-~~~fD~ 115 (243)
T PF01861_consen 45 GKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDL-----RDPLPEEL-RGKFDV 115 (243)
T ss_dssp T-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---T-----TS---TTT-SS-BSE
T ss_pred CCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecc-----cccCCHHH-hcCCCE
Confidence 4789988844 355566666556789999999999999999999999987 99999999 66676533 479999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc-EEEEEEcCCC--H---HHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG-SIFLETNHDH--L---DKIKEWLGI 293 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG-~l~~e~~~~~--~---~~~~~~l~~ 293 (322)
+++||||-..+ ...|+.++...||..| ..++-++... . ..+++.+.+
T Consensus 116 f~TDPPyT~~G---------------------------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 116 FFTDPPYTPEG---------------------------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE 168 (243)
T ss_dssp EEE---SSHHH---------------------------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT
T ss_pred EEeCCCCCHHH---------------------------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH
Confidence 99999996522 4688999999999766 6677776654 2 246666665
Q ss_pred cCCCCceeeEEEecCCC
Q psy7093 294 CGHHMKLKLVENYKDFN 310 (322)
Q Consensus 294 ~~~~~~~~~v~~~~D~~ 310 (322)
.| |..-.++.|++
T Consensus 169 ~g----l~i~dii~~Fn 181 (243)
T PF01861_consen 169 MG----LVITDIIPDFN 181 (243)
T ss_dssp S------EEEEEEEEEE
T ss_pred CC----cCHHHHHhhhc
Confidence 54 56666666654
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-08 Score=77.69 Aligned_cols=83 Identities=19% Similarity=0.375 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhH-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGA-ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~-~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.+.+.+.+.+.... +.+|+|+|||+|. ++..+++. +..|+++|+++.+++.|+++. +.++.+|+
T Consensus 3 ~i~~~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDl--- 67 (134)
T PRK04148 3 TIAEFIAENYEKGK--NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG--------LNAFVDDL--- 67 (134)
T ss_pred HHHHHHHHhccccc--CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC--------CeEEECcC---
Confidence 35556666554432 3789999999995 88888876 789999999999988887652 67899999
Q ss_pred ccccccCcCcCCCCeeEEEE-cCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVS-NPP 225 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~-NPP 225 (322)
+++-.. .-..+|+|.+ +||
T Consensus 68 --f~p~~~--~y~~a~liysirpp 87 (134)
T PRK04148 68 --FNPNLE--IYKNAKLIYSIRPP 87 (134)
T ss_pred --CCCCHH--HHhcCCEEEEeCCC
Confidence 554221 2356899988 665
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.6e-08 Score=89.65 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=74.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEccCCCcccccc-c
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---------VANQLQVFHAEIDSKGQVKN-L 208 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~---------l~~~i~~~~~D~~~~~~~~~-l 208 (322)
++.+|||+|||-|.-..-.... +-..++|+|++..+++.|++..+... ..-...++.+|. +.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~-----f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADC-----FSESL 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTT-----CCSHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccc-----ccchh
Confidence 3479999999988766666555 45799999999999999999883321 011256788887 322 1
Q ss_pred CcCcCC--CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 209 QPDLLE--QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 209 ~~~~~~--~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
...+.. .+||+|-|....+..- |.. +-.+.+++.+..+|+|||+++..+..
T Consensus 136 ~~~~~~~~~~FDvVScQFalHY~F------------ese----------~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFALHYAF------------ESE----------EKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HCTSSSTTS-EEEEEEES-GGGGG------------SSH----------HHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hhhccccCCCcceeehHHHHHHhc------------CCH----------HHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 111222 5899999965544322 111 12578999999999999999886643
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=83.39 Aligned_cols=123 Identities=21% Similarity=0.330 Sum_probs=86.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccCCCcccccccCcCcCCC-
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---VANQLQVFHAEIDSKGQVKNLQPDLLEQ- 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~~~~~~l~~~~~~~- 215 (322)
+.+||=+|.|.|..+..+.+..+..+|+.||+++..++.|++-..... -..|++++.+|. ...+.. ...
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg-----~~~l~~--~~~~ 149 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG-----RKFLKE--TQEE 149 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH-----HHHHHT--SSST
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh-----HHHHHh--ccCC
Confidence 489999999999999999987556899999999999999998765432 146899999998 555543 223
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc--CCCHHHHHHHH
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN--HDHLDKIKEWL 291 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~--~~~~~~~~~~l 291 (322)
+||+|+.+.+- +... ...|+ -+.+++.+.+.|+|||++++..+ ..+...+..+.
T Consensus 150 ~yDvIi~D~~d-p~~~-------------~~~l~--------t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~ 205 (246)
T PF01564_consen 150 KYDVIIVDLTD-PDGP-------------APNLF--------TREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSIL 205 (246)
T ss_dssp -EEEEEEESSS-TTSC-------------GGGGS--------SHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHH
T ss_pred cccEEEEeCCC-CCCC-------------ccccc--------CHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHH
Confidence 89999997653 1111 00011 35788999999999999998764 34455544443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=85.11 Aligned_cols=91 Identities=26% Similarity=0.345 Sum_probs=71.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++...... +..|||+|+|.|.++..+++. ..+|+++|+++..+...++... ..++++++++|+
T Consensus 18 v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~Da----- 85 (259)
T COG0030 18 VIDKIVEAANISP--GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDA----- 85 (259)
T ss_pred HHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCch-----
Confidence 4567777666543 379999999999999999999 6789999999999998887654 245699999999
Q ss_pred ccccCcCcCCC-CeeEEEEcCCCCCCC
Q psy7093 205 VKNLQPDLLEQ-KFDLVVSNPPYVPSL 230 (322)
Q Consensus 205 ~~~l~~~~~~~-~fDlIv~NPPy~~~~ 230 (322)
+..- ++.- .++.||+|.||.-+.
T Consensus 86 Lk~d---~~~l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 86 LKFD---FPSLAQPYKVVANLPYNISS 109 (259)
T ss_pred hcCc---chhhcCCCEEEEcCCCcccH
Confidence 4432 1111 689999999997655
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=82.47 Aligned_cols=93 Identities=13% Similarity=0.254 Sum_probs=73.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH------N--VANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~------~--l~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||+.+|+|..++.++.. +++|+++|.++.+..+.+.|+++. + +..+++++++|. .+.+..
T Consensus 90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da-----~~~L~~-- 160 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-----LTALTD-- 160 (250)
T ss_pred CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH-----HHHHhh--
Confidence 48999999999999999998 778999999999999999999874 2 225799999998 666643
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcc
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALY 242 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ 242 (322)
....||+|+.+|||.....-..-..+.+.|
T Consensus 161 ~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~ 190 (250)
T PRK10742 161 ITPRPQVVYLDPMFPHKQKSALVKKEMRVF 190 (250)
T ss_pred CCCCCcEEEECCCCCCCccccchhhhHHHH
Confidence 234799999999998765433333444433
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-08 Score=83.85 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=68.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..++|+|||+|..++.+|..+ .+|+|+|+|+.+|+.|++.-.........++...+. ..+.. .+++.|+|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~------v~L~g--~e~SVDlI 104 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM------VDLLG--GEESVDLI 104 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCcccccccc------ccccC--CCcceeee
Confidence 489999999998888888884 579999999999999886432111111122222222 22211 26789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
++--..+... ..++.+.+.++||+.|-++..-+++
T Consensus 105 ~~Aqa~HWFd---------------------------le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 105 TAAQAVHWFD---------------------------LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhhhhHHhhc---------------------------hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 9844333322 4589999999999888444434443
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-07 Score=81.68 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=86.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V-ANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++||-+|.|.|..+..+++..+..+++.||+++..++++++-+.... . ..|++++..|. .+.+.. ...+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg-----~~~v~~--~~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG-----VEFLRD--CEEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH-----HHHHHh--CCCcC
Confidence 69999999999999999999888899999999999999998775432 2 47899999998 666543 23389
Q ss_pred eEEEEcC--CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 218 DLVVSNP--PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 218 DlIv~NP--Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|+|++|- |-. |-.+|+ -..+++.+.+.|+++|+++...+.
T Consensus 151 DvIi~D~tdp~g----------------p~~~Lf--------t~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 151 DVIIVDSTDPVG----------------PAEALF--------TEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CEEEEcCCCCCC----------------cccccC--------CHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999952 211 111222 347899999999999999998554
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.5e-07 Score=80.74 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcc-CCCCCCeEEEEcCchh----HHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHH-----cC
Q psy7093 123 EELIDIITDKLES-SNHTPTRMIEIGSGTG----AITISLLKHFP-----KLKAIAIDQSKHACDLTEQNAVM-----HN 187 (322)
Q Consensus 123 e~lv~~i~~~~~~-~~~~~~~iLDlg~GsG----~~~~~la~~~~-----~~~v~~vDis~~al~~A~~n~~~-----~~ 187 (322)
+.+.+.++..+.. ....+.+|+-.||+|| .+++.+...++ ..+|+|+|+|..+++.|+.-... -+
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 4555666654432 2113479999999999 77888887775 47999999999999999863211 11
Q ss_pred C-----------------------CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 188 V-----------------------ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 188 l-----------------------~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
+ ...|.|.+.|+ +...+ ..+.||+|+|=- .+-.++.+.
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NL-----l~~~~---~~~~fD~IfCRN------VLIYFd~~~----- 219 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNL-----LDDSP---FLGKFDLIFCRN------VLIYFDEET----- 219 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCC-----CCCcc---ccCCCCEEEEcc------eEEeeCHHH-----
Confidence 1 12467777787 43321 356899999921 222222332
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
-+++++.....|+|||+|++-..
T Consensus 220 -------------q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 220 -------------QERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred -------------HHHHHHHHHHHhCCCCEEEEccC
Confidence 35899999999999999998443
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-07 Score=83.09 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=74.6
Q ss_pred CeEEEEcCchh----HHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHH--------------------------c
Q psy7093 141 TRMIEIGSGTG----AITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVM--------------------------H 186 (322)
Q Consensus 141 ~~iLDlg~GsG----~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~--------------------------~ 186 (322)
.+|+..||+|| .+++.+....+ ..+|+|+|+|+.+++.|++-... +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 79999999999 45555555332 36899999999999999876211 0
Q ss_pred ----CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 187 ----NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 187 ----~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
.+.++|+|.+.|+ ++... ...++||+|+|.--++.. +++ .-++++
T Consensus 197 ~v~~~lr~~V~F~~~NL-----~~~~~--~~~~~fD~I~cRNvliyF------~~~------------------~~~~vl 245 (287)
T PRK10611 197 RVRQELANYVDFQQLNL-----LAKQW--AVPGPFDAIFCRNVMIYF------DKT------------------TQERIL 245 (287)
T ss_pred EEChHHHccCEEEcccC-----CCCCC--ccCCCcceeeHhhHHhcC------CHH------------------HHHHHH
Confidence 0124578888888 44210 124789999994332221 111 145899
Q ss_pred HHHhccCccCcEEEEEEc
Q psy7093 263 VFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~ 280 (322)
+...+.|+|||+|++-+.
T Consensus 246 ~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 246 RRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHhCCCcEEEEeCc
Confidence 999999999999887553
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-06 Score=79.01 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=128.2
Q ss_pred CCceeEecceeecCeEEEeCCCCcccCchhHHHHHHH----HHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEE
Q psy7093 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDII----TDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAI 167 (322)
Q Consensus 93 ~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i----~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~ 167 (322)
.|.|-|.-+.+=.+++++.+.+-.+...+.....+.+ ++.++.. .++|=+|.|.|.....+.+. | --+|+
T Consensus 243 spYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a----~~vLvlGGGDGLAlRellky-P~~~qI~ 317 (508)
T COG4262 243 SPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGA----RSVLVLGGGDGLALRELLKY-PQVEQIT 317 (508)
T ss_pred CccceEEEEEecCceEEEEcCceeeeechhhhhhheeeeccccccccc----ceEEEEcCCchHHHHHHHhC-CCcceEE
Confidence 4555555555455777888777655333333333332 2222222 68999999999999998876 7 46899
Q ss_pred EEeCCHHHHHHHHHHHHHc--C---C-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhc
Q psy7093 168 AIDQSKHACDLTEQNAVMH--N---V-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL 241 (322)
Q Consensus 168 ~vDis~~al~~A~~n~~~~--~---l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~ 241 (322)
-||++|.+++.+++|.... + + +.|++++..|+ +..+.. ....||.||.+.|-.....+..+-
T Consensus 318 lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA-----f~wlr~--a~~~fD~vIVDl~DP~tps~~rlY----- 385 (508)
T COG4262 318 LVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA-----FQWLRT--AADMFDVVIVDLPDPSTPSIGRLY----- 385 (508)
T ss_pred EEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH-----HHHHHh--hcccccEEEEeCCCCCCcchhhhh-----
Confidence 9999999999999775332 1 1 35899999999 777754 345899999988755544432221
Q ss_pred ccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-----HHHHHHHHHHcCCCCceeeEEEecCCCCCCeEE
Q psy7093 242 YEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-----LDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316 (322)
Q Consensus 242 ~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-----~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~ 316 (322)
-..+...+.+.|+++|.+++.-+... .-.+...+++.|+ .-....++---+|..-|+
T Consensus 386 ----------------S~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~--~~~Pyhv~VPTFGeWGf~ 447 (508)
T COG4262 386 ----------------SVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY--RVWPYHVHVPTFGEWGFI 447 (508)
T ss_pred ----------------hHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc--eeeeeEEecCccccccee
Confidence 12566678899999999999876432 2345666777764 223345555667777777
Q ss_pred EEEE
Q psy7093 317 ELKL 320 (322)
Q Consensus 317 ~~~~ 320 (322)
.+.+
T Consensus 448 l~~~ 451 (508)
T COG4262 448 LAAP 451 (508)
T ss_pred eccc
Confidence 6654
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-06 Score=67.41 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=73.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCC-hhhhccc
Q psy7093 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE-PEIALYE 243 (322)
Q Consensus 165 ~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~-~~v~~~e 243 (322)
+|+|.||.+.|++.+++.++..++.+++++++.+- +.+....+.+++|+++.|.-|.|.+|..-.. ++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH------e~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~T---- 70 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH------ENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPET---- 70 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G------GGGGGT--S--EEEEEEEESB-CTS-TTSB--HHH----
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH------HHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHH----
Confidence 69999999999999999999999888999998775 3333333345899999999999988754221 111
Q ss_pred ccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC------HHHHHHHHHHcC
Q psy7093 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH------LDKIKEWLGICG 295 (322)
Q Consensus 244 p~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~------~~~~~~~l~~~~ 295 (322)
.-..++.+.++|+|||.+.+.+-+++ .+.+.+++..-.
T Consensus 71 --------------Tl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 71 --------------TLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp --------------HHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred --------------HHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 33788999999999999988775544 344666666643
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG2912|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=76.86 Aligned_cols=120 Identities=21% Similarity=0.298 Sum_probs=89.4
Q ss_pred cCeEEEeCCCCcccC-chhHHHHHHHHHHhccCCCCCCe---EEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPR-SETEELIDIITDKLESSNHTPTR---MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 105 ~~~~~~v~~~~~ipr-p~te~lv~~i~~~~~~~~~~~~~---iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+|+...+.++-+.|+ |..-.++.++-+.+........+ =+|||+|.-|+--.+.....++...++|++...+..|+
T Consensus 64 fgl~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~ 143 (419)
T KOG2912|consen 64 FGLSVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAK 143 (419)
T ss_pred cCceEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhh
Confidence 467888889999986 66666677776666543221223 48999999999888877767789999999999999999
Q ss_pred HHHHHcCCCCcEEEEEccCCCcccccc-cCc---CcCCCCeeEEEEcCCCCCC
Q psy7093 181 QNAVMHNVANQLQVFHAEIDSKGQVKN-LQP---DLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 181 ~n~~~~~l~~~i~~~~~D~~~~~~~~~-l~~---~~~~~~fDlIv~NPPy~~~ 229 (322)
.|+..++++.++.+++... ... +.+ ..++..||.+.|||||...
T Consensus 144 snV~qn~lss~ikvV~~~~-----~ktll~d~~~~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 144 SNVEQNNLSSLIKVVKVEP-----QKTLLMDALKEESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred ccccccccccceeeEEecc-----hhhcchhhhccCccceeeEEecCCchhhc
Confidence 9999999988888877643 111 111 1123469999999999865
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-07 Score=78.74 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=71.6
Q ss_pred HHHHHHHHH-Hhcc-CCCCCCeEEEEcCchh----HHHHHHHHhC----C-CCEEEEEeCCHHHHHHHHHHH--------
Q psy7093 123 EELIDIITD-KLES-SNHTPTRMIEIGSGTG----AITISLLKHF----P-KLKAIAIDQSKHACDLTEQNA-------- 183 (322)
Q Consensus 123 e~lv~~i~~-~~~~-~~~~~~~iLDlg~GsG----~~~~~la~~~----~-~~~v~~vDis~~al~~A~~n~-------- 183 (322)
+.+.+.++. .+.. ....+.+|+..||+|| .+++.+.... + ..+|+|+|+|+.+++.|++-.
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 445556662 3322 1124479999999999 4555555521 1 369999999999999998641
Q ss_pred ------HHc-----C--------CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 184 ------VMH-----N--------VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 184 ------~~~-----~--------l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
+++ + +.++|+|.+.|+ ++.. ...+.||+|+|.--.+. ..++.
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL-----~~~~---~~~~~fD~I~CRNVlIY------F~~~~----- 153 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNL-----LDPD---PPFGRFDLIFCRNVLIY------FDPET----- 153 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--T-----T-S---------EEEEEE-SSGGG------S-HHH-----
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEeccc-----CCCC---cccCCccEEEecCEEEE------eCHHH-----
Confidence 111 0 113688999998 5511 24578999999433222 22222
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
-+++++...+.|+|||+|++-..
T Consensus 154 -------------~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 154 -------------QQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp -------------HHHHHHHHGGGEEEEEEEEE-TT
T ss_pred -------------HHHHHHHHHHHcCCCCEEEEecC
Confidence 46899999999999999998443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.5e-07 Score=83.70 Aligned_cols=93 Identities=22% Similarity=0.250 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
..+++.+++.+...+ +..++|.+||.|..+..+++.++ ..+|+|+|.++.+++.|++++.. .++++++++|.
T Consensus 5 pVll~Evl~~L~~~p--g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f-- 77 (296)
T PRK00050 5 PVLLDEVVDALAIKP--DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNF-- 77 (296)
T ss_pred cccHHHHHHhhCCCC--CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCH--
Confidence 346677777776542 37999999999999999999985 68999999999999999988754 35799999997
Q ss_pred cccccccCcCcCC--CCeeEEEEcCCC
Q psy7093 202 KGQVKNLQPDLLE--QKFDLVVSNPPY 226 (322)
Q Consensus 202 ~~~~~~l~~~~~~--~~fDlIv~NPPy 226 (322)
..+...... .++|.|+.|.-+
T Consensus 78 ----~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 78 ----SNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred ----HHHHHHHHcCCCccCEEEECCCc
Confidence 222111111 279999887653
|
|
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.3e-07 Score=76.15 Aligned_cols=137 Identities=14% Similarity=0.207 Sum_probs=90.1
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP--KLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~--~~~v~~vDis~~al~~A~~ 181 (322)
+.+..++.+-++-+..|. +...+++.+...-.++.++||+|+|||+++..++.... +..++|+|.-++.++.+++
T Consensus 50 y~d~pq~~G~n~~iSAp~---mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~ 126 (237)
T KOG1661|consen 50 YMDSPQKIGYNLTISAPH---MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKK 126 (237)
T ss_pred CCCCccccCCceEEcchH---HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHH
Confidence 344444444344443444 34445555543222347899999999999998886543 3345999999999999999
Q ss_pred HHHHcCC---------CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC
Q psy7093 182 NAVMHNV---------ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252 (322)
Q Consensus 182 n~~~~~l---------~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~ 252 (322)
|+...-- ..++.++.+|. ....+ +..+||.|.+-. .
T Consensus 127 nl~k~i~~~e~~~~~~~~~l~ivvGDg-----r~g~~---e~a~YDaIhvGA------a--------------------- 171 (237)
T KOG1661|consen 127 NLDKDITTSESSSKLKRGELSIVVGDG-----RKGYA---EQAPYDAIHVGA------A--------------------- 171 (237)
T ss_pred HHHhhccCchhhhhhccCceEEEeCCc-----cccCC---ccCCcceEEEcc------C---------------------
Confidence 9876531 23578888887 33322 456899998831 0
Q ss_pred ChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 253 ~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
...+.+...+.|++||.+++-.+..+
T Consensus 172 -----a~~~pq~l~dqL~~gGrllip~~~~~ 197 (237)
T KOG1661|consen 172 -----ASELPQELLDQLKPGGRLLIPVGQDG 197 (237)
T ss_pred -----ccccHHHHHHhhccCCeEEEeecccC
Confidence 01344556778999999999877644
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-07 Score=76.91 Aligned_cols=146 Identities=18% Similarity=0.314 Sum_probs=86.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC--CCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL--EQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~--~~~ 216 (322)
+.+|||+||+.|.++..++.+. +..+|+|+|+.+. ... ..+.++++|+++......+...+. ..+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 3799999999999999999985 4689999999875 111 236777788744332222222222 268
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc--CCCHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN--HDHLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~--~~~~~~~~~~l~~~ 294 (322)
+|+|+|+--...... ...+.. .-++.....+..+..+|+|||.+++-+- ... ..+...+...
T Consensus 92 ~dlv~~D~~~~~~g~-~~~d~~--------------~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~~~~~~l~~~ 155 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD-RNIDEF--------------ISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-EELIYLLKRC 155 (181)
T ss_dssp ESEEEE-------SS-HHSSHH--------------HHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-HHHHHHHHHH
T ss_pred cceeccccccCCCCc-hhhHHH--------------HHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-HHHHHHHHhC
Confidence 999999752111111 001111 1134456667778889999998887653 233 3666666653
Q ss_pred CCCCceeeEEEecCCC----CCCeEEEE
Q psy7093 295 GHHMKLKLVENYKDFN----NKDRFVEL 318 (322)
Q Consensus 295 ~~~~~~~~v~~~~D~~----g~~R~~~~ 318 (322)
|..+.+.+-.. +.++++++
T Consensus 156 -----F~~v~~~Kp~~sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 156 -----FSKVKIVKPPSSRSESSEEYLVC 178 (181)
T ss_dssp -----HHHEEEEE-TTSBTTCBEEEEES
T ss_pred -----CeEEEEEECcCCCCCccEEEEEE
Confidence 67777766543 44555443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-07 Score=83.56 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHH-------HHHHHHHHcCCCCc-EEEEEccCCCcccccccCc
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACD-------LTEQNAVMHNVANQ-LQVFHAEIDSKGQVKNLQP 210 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~-------~A~~n~~~~~l~~~-i~~~~~D~~~~~~~~~l~~ 210 (322)
+++.|+|...|||.+.++.|.. ++.|+|.||+-.++. -.+.|.+++|...+ +.++.+|.. .. +
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~s-----n~-~- 278 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFS-----NP-P- 278 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeeccc-----Cc-c-
Confidence 4478999999999999999887 899999999998887 34678888885433 466777861 11 1
Q ss_pred CcCCCCeeEEEEcCCCCCCCCCCCCC----------hhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 211 DLLEQKFDLVVSNPPYVPSLDIPKLE----------PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 211 ~~~~~~fDlIv~NPPy~~~~~~~~l~----------~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
......||.|||+|||.-.+...... .....|-|....+ .=.+++..++..+.+.|..||.+++=+
T Consensus 279 ~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~y---sl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQY---SLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchh---HHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 12356899999999997644332221 1112222322211 113557788999999999999998844
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.6e-06 Score=73.32 Aligned_cols=146 Identities=8% Similarity=-0.036 Sum_probs=94.5
Q ss_pred eeecCeEEEeCCCCcccCchhH-HHH-HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Q psy7093 102 WNFRDLTLKMTPPVFIPRSETE-ELI-DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLT 179 (322)
Q Consensus 102 ~~f~~~~~~v~~~~~iprp~te-~lv-~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A 179 (322)
...+|.-+..+ ++.. .+.. -+. |.+....-.....+++||=+|.|-|..+..+++. | .+|+.||+++..++.+
T Consensus 36 s~~fGr~LvLD-~~~~--te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~ 110 (262)
T PRK00536 36 SKDFGEIAMLN-KQLL--FKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSF 110 (262)
T ss_pred ccccccEEEEe-eeee--ecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHH
Confidence 34567777777 5553 1222 222 3332221112224589999999999999999998 4 4999999999999999
Q ss_pred HHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhH
Q psy7093 180 EQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256 (322)
Q Consensus 180 ~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~ 256 (322)
++..... ++ +.|++++.. + .. ...++||+||++-.|.
T Consensus 111 k~~lP~~~~~~~DpRv~l~~~-~------~~----~~~~~fDVIIvDs~~~----------------------------- 150 (262)
T PRK00536 111 ISFFPHFHEVKNNKNFTHAKQ-L------LD----LDIKKYDLIICLQEPD----------------------------- 150 (262)
T ss_pred HHHCHHHHHhhcCCCEEEeeh-h------hh----ccCCcCCEEEEcCCCC-----------------------------
Confidence 9854322 12 347777652 2 11 1236899999973211
Q ss_pred HHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHc
Q psy7093 257 IIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294 (322)
Q Consensus 257 ~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~ 294 (322)
..+.+.+.+.|+|||+++...+. -+.+.+..+.+..
T Consensus 151 --~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l 188 (262)
T PRK00536 151 --IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM 188 (262)
T ss_pred --hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHH
Confidence 14667789999999999986543 3455555555443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.9e-06 Score=70.26 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=55.7
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 167 IAIDQSKHACDLTEQNAVMHN--VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 167 ~~vDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
+|+|+|+++++.|+++....+ ..++++++++|+ ..++ +..++||+|+++--.....+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~------~~lp--~~~~~fD~v~~~~~l~~~~d------------- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA------IDLP--FDDCEFDAVTMGYGLRNVVD------------- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech------hhCC--CCCCCeeEEEecchhhcCCC-------------
Confidence 489999999999987765322 234699999998 3343 35678999999532221111
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
...+++++.++|||||.+++
T Consensus 60 -------------~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 60 -------------RLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred -------------HHHHHHHHHHHcCcCeEEEE
Confidence 34789999999999999865
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=78.06 Aligned_cols=93 Identities=30% Similarity=0.414 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +..|+|+|+|.|.++..+++. ..+++++|+++..++..++... ...+++++++|+
T Consensus 16 ~~~~~~Iv~~~~~~~--~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~--- 85 (262)
T PF00398_consen 16 PNIADKIVDALDLSE--GDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF--- 85 (262)
T ss_dssp HHHHHHHHHHHTCGT--TSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T---
T ss_pred HHHHHHHHHhcCCCC--CCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh---hcccceeeecch---
Confidence 566777887776543 379999999999999999998 4899999999999988887554 345799999999
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~ 227 (322)
++.-...........|++|.||.
T Consensus 86 --l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 --LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp --TTSCGGGHCSSSEEEEEEEETGT
T ss_pred --hccccHHhhcCCceEEEEEeccc
Confidence 43221111124678999999994
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=76.86 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=82.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEccCCCcccccc-cCcCc--
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN-VAN----QLQVFHAEIDSKGQVKN-LQPDL-- 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~-l~~----~i~~~~~D~~~~~~~~~-l~~~~-- 212 (322)
..++|+|||-|.-.+-.-+. .-..++|+||.+..++.|++..+.+. ... .+.|+.+|. +.. +...+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc-----~~~~l~d~~e~ 192 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC-----FKERLMDLLEF 192 (389)
T ss_pred cccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc-----chhHHHHhccC
Confidence 67999999999888777666 34689999999999999999876432 111 267889997 321 11111
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEW 290 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~ 290 (322)
...+||+|-|-..++..-+ .. +-.+.++.++..+|+|||+++-.+ ++....+..+
T Consensus 193 ~dp~fDivScQF~~HYaFe------------te----------e~ar~~l~Nva~~LkpGG~FIgTi-Pdsd~Ii~rl 247 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFE------------TE----------ESARIALRNVAKCLKPGGVFIGTI-PDSDVIIKRL 247 (389)
T ss_pred CCCCcceeeeeeeEeeeec------------cH----------HHHHHHHHHHHhhcCCCcEEEEec-CcHHHHHHHH
Confidence 2345999999766554322 11 114689999999999999988755 3433444433
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.8e-06 Score=69.72 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=71.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+++++...+ +...|.|+|||.+.++.++.. ..+|+..|+-.. .+ .+..+|+
T Consensus 60 vd~iI~~l~~~~-~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--------------n~--~Vtacdi------ 113 (219)
T PF05148_consen 60 VDVIIEWLKKRP-KSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--------------NP--RVTACDI------ 113 (219)
T ss_dssp HHHHHHHHCTS--TTS-EEEES-TT-HHHHH--S------EEEEESS-S--------------ST--TEEES-T------
T ss_pred HHHHHHHHHhcC-CCEEEEECCCchHHHHHhccc---CceEEEeeccCC--------------CC--CEEEecC------
Confidence 455666665442 236899999999999865532 357999998642 12 2456887
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEcCCC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETNHDH- 283 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~~~~- 283 (322)
..+| ++.+..|++|+......++ +..++++|.|.||+||.|++ |+.++-
T Consensus 114 a~vP--L~~~svDv~VfcLSLMGTn---------------------------~~~fi~EA~RvLK~~G~L~IAEV~SRf~ 164 (219)
T PF05148_consen 114 ANVP--LEDESVDVAVFCLSLMGTN---------------------------WPDFIREANRVLKPGGILKIAEVKSRFE 164 (219)
T ss_dssp TS-S----TT-EEEEEEES---SS----------------------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S
T ss_pred ccCc--CCCCceeEEEEEhhhhCCC---------------------------cHHHHHHHHheeccCcEEEEEEecccCc
Confidence 3343 4678899999864332221 56899999999999999866 776543
Q ss_pred -HHHHHHHHHHcCCCCceeeEEEecCCCCC
Q psy7093 284 -LDKIKEWLGICGHHMKLKLVENYKDFNNK 312 (322)
Q Consensus 284 -~~~~~~~l~~~~~~~~~~~v~~~~D~~g~ 312 (322)
.+...+.++..| |... .+|....
T Consensus 165 ~~~~F~~~~~~~G----F~~~--~~d~~n~ 188 (219)
T PF05148_consen 165 NVKQFIKALKKLG----FKLK--SKDESNK 188 (219)
T ss_dssp -HHHHHHHHHCTT----EEEE--EEE--ST
T ss_pred CHHHHHHHHHHCC----CeEE--ecccCCC
Confidence 444555566654 6654 3565543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=66.17 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKH-FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~-~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
|....+.+.+...+....+ .-|||+|.|||.++-++.++ .+...++++|.|++-+....+.. ..+.++.+|
T Consensus 31 PsSs~lA~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gd 102 (194)
T COG3963 31 PSSSILARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGD 102 (194)
T ss_pred CCcHHHHHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccc
Confidence 3445666777766665433 68999999999999999886 34568999999999887766432 126688898
Q ss_pred CCCccccccc--CcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 199 IDSKGQVKNL--QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 199 ~~~~~~~~~l--~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+ +..- -.......||.|||--|..... ..+ --++++.+...|..||.++
T Consensus 103 a-----~~l~~~l~e~~gq~~D~viS~lPll~~P------~~~------------------~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 103 A-----FDLRTTLGEHKGQFFDSVISGLPLLNFP------MHR------------------RIAILESLLYRLPAGGPLV 153 (194)
T ss_pred h-----hhHHHHHhhcCCCeeeeEEeccccccCc------HHH------------------HHHHHHHHHHhcCCCCeEE
Confidence 8 3221 1123456799999988876533 111 2378999999999999876
Q ss_pred E
Q psy7093 277 L 277 (322)
Q Consensus 277 ~ 277 (322)
-
T Consensus 154 q 154 (194)
T COG3963 154 Q 154 (194)
T ss_pred E
Confidence 5
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=74.78 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=96.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|||+|+..|.=+.++|....+ ..|+|.|.+...++..+.|+.++|+.+ ..+.+.|. .+.....++ ++|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~-----~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDG-----REFPEKEFP-GSF 313 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCc-----ccccccccC-ccc
Confidence 5589999999999888888887654 589999999999999999999999876 55566666 222112233 389
Q ss_pred eEEEEcCCCCCCCCCCC-----CC---hhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC----HH
Q psy7093 218 DLVVSNPPYVPSLDIPK-----LE---PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH----LD 285 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~-----l~---~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~ 285 (322)
|-|+.+.|..-..-... .. .++..|-+ +-++++..|.+++++||++++.++.-. +.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~------------LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAH------------LQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHH------------HHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 99999999765333221 11 12222221 247999999999999999999887533 33
Q ss_pred HHHHHHHHc
Q psy7093 286 KIKEWLGIC 294 (322)
Q Consensus 286 ~~~~~l~~~ 294 (322)
.+.-.|.++
T Consensus 382 vV~yaL~K~ 390 (460)
T KOG1122|consen 382 VVDYALKKR 390 (460)
T ss_pred HHHHHHHhC
Confidence 344445555
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-05 Score=66.39 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
..+|+|||+-.|..+..+++..+. ..|+|+|+.|-. ....+.++++|++++..++.+...+...++|
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 379999999999999999988643 469999998732 1223999999997666555554445556689
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGHH 297 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~~ 297 (322)
+|+|++-= ........+... -+.+....++.+..+|+|||.+++-+= ....+.+-..++++
T Consensus 114 vV~sD~ap-~~~g~~~~Dh~r--------------~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~--- 175 (205)
T COG0293 114 VVLSDMAP-NTSGNRSVDHAR--------------SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL--- 175 (205)
T ss_pred eEEecCCC-CcCCCccccHHH--------------HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh---
Confidence 99997521 111111111111 123456788889999999999887542 22233344444443
Q ss_pred CceeeEEEecCCCCCC
Q psy7093 298 MKLKLVENYKDFNNKD 313 (322)
Q Consensus 298 ~~~~~v~~~~D~~g~~ 313 (322)
|..|++.+=.+.+.
T Consensus 176 --F~~v~~~KP~aSR~ 189 (205)
T COG0293 176 --FRKVKIFKPKASRK 189 (205)
T ss_pred --hceeEEecCccccC
Confidence 67788776655444
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.8e-06 Score=71.37 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=58.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+.|+|+|||.++...|+. .-+|+++|.+|.....|++|+...|.. +++++.+|+ ... .-...|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA-----~~y-----~fe~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDA-----RDY-----DFENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccc-----ccc-----ccccccee
Confidence 57999999999999988887 679999999999999999999777765 599999999 222 12467999
Q ss_pred EE
Q psy7093 221 VS 222 (322)
Q Consensus 221 v~ 222 (322)
+|
T Consensus 101 ic 102 (252)
T COG4076 101 IC 102 (252)
T ss_pred HH
Confidence 98
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.1e-05 Score=65.14 Aligned_cols=140 Identities=13% Similarity=0.171 Sum_probs=92.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~~~f 217 (322)
..+|||+||..|..+..+-++. |+..|.|||+-.-. ..+ .+.++++ |++|+.....+.+.+++.+.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPE-GATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCC-CcccccccccCCHHHHHHHHHhCCCCcc
Confidence 3799999999999998777765 88999999985321 112 2556666 88766544444444567889
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGH 296 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~ 296 (322)
|+|+|+.-=-.++ ...++|+.. .++....+..+...++|+|.+++-+-. .+...+...+...
T Consensus 138 dvVlSDMapnaTG------vr~~Dh~~~---------i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~-- 200 (232)
T KOG4589|consen 138 DVVLSDMAPNATG------VRIRDHYRS---------IELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAV-- 200 (232)
T ss_pred cEEEeccCCCCcC------cchhhHHHH---------HHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHH--
Confidence 9999974221111 122333332 244567778889999999999998754 3345566666554
Q ss_pred CCceeeEEEecCCCC
Q psy7093 297 HMKLKLVENYKDFNN 311 (322)
Q Consensus 297 ~~~~~~v~~~~D~~g 311 (322)
|.+|++.|-.+.
T Consensus 201 ---f~~Vk~vKP~As 212 (232)
T KOG4589|consen 201 ---FTNVKKVKPDAS 212 (232)
T ss_pred ---hhhcEeeCCccc
Confidence 677877665443
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8e-06 Score=69.19 Aligned_cols=116 Identities=20% Similarity=0.329 Sum_probs=82.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+.+++...-..- ++++|||+|+|||..+++.++. ....|++.|+.+......+.|++.+++. +.+...|.
T Consensus 67 lAR~i~~~PetV--rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~----- 136 (218)
T COG3897 67 LARYIDDHPETV--RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADL----- 136 (218)
T ss_pred HHHHHhcCcccc--ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccc-----
Confidence 334444433332 3489999999999999999887 5678999999999999999999999965 88999988
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
.. .+..||+|+.-=-+ |++. +..+++. ..+.|+..|..++.-.+..
T Consensus 137 ~g------~~~~~Dl~LagDlf---------------y~~~-----------~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 137 IG------SPPAFDLLLAGDLF---------------YNHT-----------EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cC------CCcceeEEEeecee---------------cCch-----------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 32 35689999872111 1111 1335666 6777778887776443443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.4e-05 Score=69.71 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=81.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEE
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNVAN-QLQ 193 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~~~l~~-~i~ 193 (322)
|-|.+.+-+..-+.....+ ++..++|+|||+|.=+..+...+. ...++++|+|.++|+.+..++.....+. .+.
T Consensus 57 r~E~~iL~~~~~~Ia~~i~-~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~ 135 (319)
T TIGR03439 57 NDEIEILKKHSSDIAASIP-SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCA 135 (319)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEE
Confidence 5565555444333332221 235899999999987666666542 4679999999999999999987333332 234
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc-cCccC
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN-YLKPN 272 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~-~Lk~g 272 (322)
-+++|.++. +..++.........+++. +. ..+.+|+|..| ..+++...+ .|+||
T Consensus 136 ~l~gdy~~~--l~~l~~~~~~~~~r~~~f-----lG-------SsiGNf~~~ea-----------~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 136 GLLGTYDDG--LAWLKRPENRSRPTTILW-----LG-------SSIGNFSRPEA-----------AAFLAGFLATALSPS 190 (319)
T ss_pred EEEecHHHH--HhhcccccccCCccEEEE-----eC-------ccccCCCHHHH-----------HHHHHHHHHhhCCCC
Confidence 478887221 111211001123455554 11 12334555444 478888888 99999
Q ss_pred cEEEEEEc
Q psy7093 273 GSIFLETN 280 (322)
Q Consensus 273 G~l~~e~~ 280 (322)
|.+++-+.
T Consensus 191 d~lLiG~D 198 (319)
T TIGR03439 191 DSFLIGLD 198 (319)
T ss_pred CEEEEecC
Confidence 99998653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=75.27 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=77.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+|||.-+|||.=++-.+++.++ .+|++.|+|+++++..++|++.+++.+ ++++.+.|+ ...+. .....||
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA-----n~ll~--~~~~~fD 123 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDA-----NVLLY--SRQERFD 123 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H-----HHHHC--HSTT-EE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhH-----HHHhh--hccccCC
Confidence 58999999999999999999654 689999999999999999999999987 799999998 33221 1467899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|=.+| |.+. ..++..+.+.++.||+|.+.
T Consensus 124 ~IDlDP-fGSp-----------------------------~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 124 VIDLDP-FGSP-----------------------------APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp EEEE---SS-------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCC-CCCc-----------------------------cHhHHHHHHHhhcCCEEEEe
Confidence 999985 4432 26888999999999999884
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.1e-05 Score=74.51 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=88.0
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNVAN 190 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~~~l~~ 190 (322)
+++|+...+.++ +.+.....+...+.|++||||.+.+...+... ...++|.+..+.+...|+.|...++...
T Consensus 197 ~~Tp~~Iv~l~~----~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 197 FFTPQDISELLA----RIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred eeCcHHHHHHHH----HHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 445655544443 33332211225799999999999887655432 2468999999999999999987776532
Q ss_pred -cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCCh---hhhccccccccc-CCCChhHHHHHHHHHH
Q psy7093 191 -QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEP---EIALYEDIKALD-GGHDGLNIIKPICVFG 265 (322)
Q Consensus 191 -~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~---~v~~~ep~~al~-~g~~gl~~~~~~l~~~ 265 (322)
......+|. +... ......+||.|++||||........+++ ..+.|.-+ .+. -...|+ .++...
T Consensus 273 ~t~~~~~~dt-----l~~~-d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~~~----afi~h~ 341 (501)
T TIGR00497 273 ANFNIINADT-----LTTK-EWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAG-TLAPNSKADL----AFVLHA 341 (501)
T ss_pred cccCcccCCc-----CCCc-cccccccCCEEeecCCcccccccccccccccccchhccc-CCCCCchhhH----HHHHHH
Confidence 244445565 3321 1112357999999999975332221221 11111000 010 123343 677777
Q ss_pred hccCccCcEEEEEE
Q psy7093 266 SNYLKPNGSIFLET 279 (322)
Q Consensus 266 ~~~Lk~gG~l~~e~ 279 (322)
...|++||...+..
T Consensus 342 ~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 342 LYVLGQEGTAAIVC 355 (501)
T ss_pred HHhcCCCCeEEEEe
Confidence 88899999866544
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-05 Score=63.40 Aligned_cols=59 Identities=20% Similarity=0.444 Sum_probs=50.2
Q ss_pred CCeEEEEcCchhHHHHHHHH-----hCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccC
Q psy7093 140 PTRMIEIGSGTGAITISLLK-----HFPKLKAIAIDQSKHACDLTEQNAVMHN--VANQLQVFHAEI 199 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~-----~~~~~~v~~vDis~~al~~A~~n~~~~~--l~~~i~~~~~D~ 199 (322)
...|+|+|||.|.++..++. . ++.+|+++|.++..++.+....+..+ ...++++..+++
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI 91 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence 47899999999999999999 4 68899999999999999999888776 445566666665
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.6e-05 Score=68.41 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=63.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.++||||+|.|..+..++..+ .+|+++|.|+.|.. .+++.| ++++..|- +.. ...+||+|
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~----rL~~kg----~~vl~~~~--------w~~--~~~~fDvI 155 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRW----RLSKKG----FTVLDIDD--------WQQ--TDFKFDVI 155 (265)
T ss_pred CceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHH----HHHhCC----CeEEehhh--------hhc--cCCceEEE
Confidence 689999999999999999986 46999999998843 344444 33333221 111 24589999
Q ss_pred EE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.| |- -.+.+.| ..+++.+.+.|+|+|.+++
T Consensus 156 scLNv-------------LDRc~~P--------------~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 156 SCLNV-------------LDRCDRP--------------LTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred eehhh-------------hhccCCH--------------HHHHHHHHHHhCCCCEEEE
Confidence 98 21 1112233 3788899999999999876
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=64.55 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=52.2
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
.++|+|||.|.++..+++..+..+|+++|.++.+.+.+++|++.+++.+ +++++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeee
Confidence 4899999999999999999888899999999999999999999888764 88888887
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=9.5e-06 Score=71.72 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHH
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~ 178 (322)
+.+|||+|||+|.++..+++. +..+|+|+|+++.++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 368999999999999999987 56789999999987765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.02 E-value=3e-06 Score=65.62 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=43.9
Q ss_pred EEEcCchhHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 144 IEIGSGTGAITISLLKHFPKL---KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
||+||..|..++.+++.++.. +++++|..+. .+.++++++..++.+++++++++. .+.++. +..+++|+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s-----~~~l~~-~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDS-----PDFLPS-LPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-T-----HHHHHH-HHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCc-----HHHHHH-cCCCCEEEE
Confidence 689999999999988876543 6999999986 445555566567777899999998 444332 224689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+.+-+-. ......-++.+...|+|||++++
T Consensus 74 ~iDg~H~---------------------------~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 74 FIDGDHS---------------------------YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEES------------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCC---------------------------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 9953100 12245778889999999999887
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.1e-05 Score=68.44 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEE
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-------HNV-ANQLQV 194 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-------~~l-~~~i~~ 194 (322)
...+..+++.+.-. +...++|||||.|...+.+|...+-.+.+|+|+.+...+.|+.+... ++. ..++++
T Consensus 28 ~~~~~~il~~~~l~--~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 28 PEFVSKILDELNLT--PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHHHhCCC--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 34455666666543 23799999999999999998887767799999999999888775433 232 346888
Q ss_pred EEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 195 ~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
.++|+.++..... .-...|+|++|
T Consensus 106 ~~gdfl~~~~~~~-----~~s~AdvVf~N 129 (205)
T PF08123_consen 106 IHGDFLDPDFVKD-----IWSDADVVFVN 129 (205)
T ss_dssp ECS-TTTHHHHHH-----HGHC-SEEEE-
T ss_pred eccCccccHhHhh-----hhcCCCEEEEe
Confidence 9999832211111 11346899997
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00024 Score=66.01 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=104.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc--cccCcCc
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKL----KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV--KNLQPDL 212 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~----~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~--~~l~~~~ 212 (322)
++.+|||+|+..|.=++.+....-.. .|++-|.++.-+....+-..+..-. .+.+...|+..-... .... ..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~-~~ 232 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN-DK 232 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc-hh
Confidence 34799999999998888887765333 8999999999998888777555432 344555554110000 0000 01
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccc-cccccCCCChh-HHHHHHHHHHhccCccCcEEEEEEcC----CCHHH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYED-IKALDGGHDGL-NIIKPICVFGSNYLKPNGSIFLETNH----DHLDK 286 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep-~~al~~g~~gl-~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~ 286 (322)
....||-|+++-|......+.. +...+.. .... -..|| ..--.++.++.++||+||.+++.++. .....
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk---~~~i~~~~w~~~--~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRK---NPNIWKEGWKTQ--RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred hhhhcceeEEecccCCCccccc---CchHhhhhhhhh--hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 2347999999999765432222 1111111 1110 01232 22358999999999999999998864 33566
Q ss_pred HHHHHHHcCCCCceeeEEEecCCCCCCeE
Q psy7093 287 IKEWLGICGHHMKLKLVENYKDFNNKDRF 315 (322)
Q Consensus 287 ~~~~l~~~~~~~~~~~v~~~~D~~g~~R~ 315 (322)
+.++++..+. .+.-+.+..|+.+..|+
T Consensus 308 V~~~L~~~~~--~~~lv~~~~~lp~l~r~ 334 (375)
T KOG2198|consen 308 VQEALQKVGG--AVELVDVSGDLPGLKRM 334 (375)
T ss_pred HHHHHHHhcC--cccceeeccccccceec
Confidence 7888888764 35556666666665543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.2e-05 Score=66.38 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=80.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+.||.|+|.|.++-.++..+ -.+|..||..+..++.|++.+.... ..-.++++.-+ +.+. ...++||+|
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gL------Q~f~--P~~~~YDlI 126 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGL------QDFT--PEEGKYDLI 126 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-G------GG------TT-EEEE
T ss_pred ceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCH------hhcc--CCCCcEeEE
Confidence 689999999999998776654 4689999999999999997654311 22245666655 2221 124699999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE----------EcC------CCH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE----------TNH------DHL 284 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e----------~~~------~~~ 284 (322)
.+. ....+|..+. +-.+++++...|+|||++++- ... +..
T Consensus 127 W~Q------W~lghLTD~d------------------lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~ 182 (218)
T PF05891_consen 127 WIQ------WCLGHLTDED------------------LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSD 182 (218)
T ss_dssp EEE------S-GGGS-HHH------------------HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEH
T ss_pred Eeh------HhhccCCHHH------------------HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCH
Confidence 984 1222333322 458999999999999999882 111 235
Q ss_pred HHHHHHHHHcCC
Q psy7093 285 DKIKEWLGICGH 296 (322)
Q Consensus 285 ~~~~~~l~~~~~ 296 (322)
+..++++++.|.
T Consensus 183 ~~~~~lF~~AGl 194 (218)
T PF05891_consen 183 EHFRELFKQAGL 194 (218)
T ss_dssp HHHHHHHHHCT-
T ss_pred HHHHHHHHHcCC
Confidence 789999999873
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=68.29 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=79.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|.-+|||.=++-.|.+.+..+|+.-|+||+|++.+++|++.+...+ ..+++.|+ ..-+.. ....||+|
T Consensus 54 ~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DA-----N~lm~~--~~~~fd~I 125 (380)
T COG1867 54 KRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDA-----NALLHE--LHRAFDVI 125 (380)
T ss_pred eEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchH-----HHHHHh--cCCCccEE
Confidence 79999999999999999999887799999999999999999999984343 55566777 333321 23789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
=.+| |.+.. .++..+.+..+.||++.+.
T Consensus 126 DiDP-FGSPa-----------------------------PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 126 DIDP-FGSPA-----------------------------PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ecCC-CCCCc-----------------------------hHHHHHHHHhhcCCEEEEE
Confidence 8875 44322 5788888899999998873
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.6e-05 Score=65.28 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHHh---C-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKH---F-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~---~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
|..|+++|.-.|.-++..|+. + +..+|+|+|++...... .....+.+.++|+++++|..+++.+..+.......
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 379999999888877776653 3 67899999996543221 12233455678999999986555444432211234
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE----------------
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET---------------- 279 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~---------------- 279 (322)
...+|+-+- ++.... .-..++....++++|+++++|=
T Consensus 111 ~~vlVilDs--------~H~~~h-------------------vl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w 163 (206)
T PF04989_consen 111 HPVLVILDS--------SHTHEH-------------------VLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPW 163 (206)
T ss_dssp SSEEEEESS------------SS-------------------HHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------
T ss_pred CceEEEECC--------CccHHH-------------------HHHHHHHhCccCCCCCEEEEEeccccccccccccccch
Confidence 456777641 111122 2256666889999999999852
Q ss_pred --cCCCHHHHHHHHHHcCCCCceeeEEEecCCCC
Q psy7093 280 --NHDHLDKIKEWLGICGHHMKLKLVENYKDFNN 311 (322)
Q Consensus 280 --~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g 311 (322)
|++-...+.+++.++. .|...+.+.|..|
T Consensus 164 ~~g~~p~~av~~fL~~~~---~f~iD~~~~~~~~ 194 (206)
T PF04989_consen 164 GPGNNPKTAVKEFLAEHP---DFEIDTYYEDKFG 194 (206)
T ss_dssp ------HHHHHHHHHTTT---TEEEETTTTTS--
T ss_pred hhhhHHHHHHHHHHHHCC---CcEeccccccccc
Confidence 2334677999999886 3665555555544
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.4e-05 Score=67.96 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+..+.+.+++.+.... +..++|..+|.|.-+..+++.++..+|+|+|.++.|+..|++++..+ .+++++++++.
T Consensus 5 ~pVll~Evl~~L~~~~--ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF-- 78 (305)
T TIGR00006 5 QSVLLDEVVEGLNIKP--DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNF-- 78 (305)
T ss_pred cchhHHHHHHhcCcCC--CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCH--
Confidence 3456778888876543 37999999999999999999987799999999999999999988654 46799999986
Q ss_pred cccccccCcC---cCCCCeeEEEEcCC
Q psy7093 202 KGQVKNLQPD---LLEQKFDLVVSNPP 225 (322)
Q Consensus 202 ~~~~~~l~~~---~~~~~fDlIv~NPP 225 (322)
..+... ....++|.|+.|.-
T Consensus 79 ----~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 79 ----ANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred ----HHHHHHHHhcCCCcccEEEEecc
Confidence 222111 12246788877653
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=61.50 Aligned_cols=129 Identities=13% Similarity=0.178 Sum_probs=86.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN------VANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~------l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
..+.|||||=|.+.+.++-.+|+.-+.|.||--...+..++.+..+. .-.++.+...+. +..++..+..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na-----mk~lpn~f~k 136 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA-----MKFLPNFFEK 136 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc-----hhhccchhhh
Confidence 57999999999999999999999999999999999999888887654 122477777777 6666655555
Q ss_pred CCeeEEEE---cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHH
Q psy7093 215 QKFDLVVS---NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEW 290 (322)
Q Consensus 215 ~~fDlIv~---NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~ 290 (322)
++.+-.+. +|-|-..... +.-+...++.+..-+|++||.++..+... -.......
T Consensus 137 gqLskmff~fpdpHfk~~khk---------------------~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~ 195 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHK---------------------WRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKH 195 (249)
T ss_pred cccccceeecCChhHhhhhcc---------------------ceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHH
Confidence 54443332 2222211111 11123467778888999999998755432 23334444
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
+++++
T Consensus 196 ~e~hp 200 (249)
T KOG3115|consen 196 LEEHP 200 (249)
T ss_pred HHhCc
Confidence 45554
|
|
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=64.13 Aligned_cols=113 Identities=18% Similarity=0.308 Sum_probs=73.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+++.+...+ ....|.|+|||-+-++. +. ..+|+..|+.+. . -.++.+|+
T Consensus 168 ld~ii~~ik~r~-~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~--------------~--~~V~~cDm------ 219 (325)
T KOG3045|consen 168 LDVIIRKIKRRP-KNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV--------------N--ERVIACDM------ 219 (325)
T ss_pred HHHHHHHHHhCc-CceEEEecccchhhhhh---cc--ccceeeeeeecC--------------C--Cceeeccc------
Confidence 345555555442 23689999999999876 22 346899997531 1 34567887
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEcCCC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETNHDH- 283 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~~~~- 283 (322)
..+| +.+++.|++|+.....-+ . +..+++++.+.|++||.+++ |+.++-
T Consensus 220 ~~vP--l~d~svDvaV~CLSLMgt--------n-------------------~~df~kEa~RiLk~gG~l~IAEv~SRf~ 270 (325)
T KOG3045|consen 220 RNVP--LEDESVDVAVFCLSLMGT--------N-------------------LADFIKEANRILKPGGLLYIAEVKSRFS 270 (325)
T ss_pred cCCc--CccCcccEEEeeHhhhcc--------c-------------------HHHHHHHHHHHhccCceEEEEehhhhcc
Confidence 3333 467899999885332211 1 45799999999999999977 554432
Q ss_pred -HHHHHHHHHHcC
Q psy7093 284 -LDKIKEWLGICG 295 (322)
Q Consensus 284 -~~~~~~~l~~~~ 295 (322)
.....+.+...|
T Consensus 271 dv~~f~r~l~~lG 283 (325)
T KOG3045|consen 271 DVKGFVRALTKLG 283 (325)
T ss_pred cHHHHHHHHHHcC
Confidence 233444555555
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.001 Score=59.69 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=87.0
Q ss_pred HHHHHHHHHh----ccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------
Q psy7093 124 ELIDIITDKL----ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV----------- 188 (322)
Q Consensus 124 ~lv~~i~~~~----~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l----------- 188 (322)
.++...++.+ .....++.++||+|||.-...+..|... -.+|+..|.++...+..++-++.-+.
T Consensus 37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~ 115 (256)
T PF01234_consen 37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC 115 (256)
T ss_dssp HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence 4455444433 3222234689999999854433223221 34799999999988766554332111
Q ss_pred -----C-----------CcE-EEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 189 -----A-----------NQL-QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 189 -----~-----------~~i-~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
. ..| .++.+|++.+..+.... ....+||+|++-- .|..-
T Consensus 116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~--~~p~~~D~v~s~f----------------------cLE~a 171 (256)
T PF01234_consen 116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPV--VLPPKFDCVISSF----------------------CLESA 171 (256)
T ss_dssp HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS---SS-SSEEEEEEES----------------------SHHHH
T ss_pred hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccc--cCccchhhhhhhH----------------------HHHHH
Confidence 0 013 37788984433332200 0123699999831 11111
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEE---------cC-------CCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLET---------NH-------DHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~---------~~-------~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
..-++-|++.+++..++|||||.|++.- |. -..+.+++.+++.| |..+...+
T Consensus 172 ~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG----~~i~~~~~ 239 (256)
T PF01234_consen 172 CKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG----FDIEDLEK 239 (256)
T ss_dssp -SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT----EEEEEEEG
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC----CEEEeccc
Confidence 1235669999999999999999998732 22 23688999999886 55555444
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.5e-05 Score=61.42 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=94.6
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEE
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN--QLQVF 195 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~--~i~~~ 195 (322)
.|..|.+.-.++...... .+.+||++|.| +|..++.+|..-|...|..+|-++.+++-.++-...+..+. +..++
T Consensus 11 wpseeala~~~l~~~n~~--rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vl 88 (201)
T KOG3201|consen 11 WPSEEALAWTILRDPNKI--RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVL 88 (201)
T ss_pred cccHHHHHHHHHhchhHH--hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhh
Confidence 566677766666655543 23789999999 67778888888899999999999999988877655543221 23333
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
..++ -... ......+||+|++-- -|. -++-..+++.+..+|+|.|.
T Consensus 89 rw~~-----~~aq-sq~eq~tFDiIlaADClFf---------------------------dE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 89 RWLI-----WGAQ-SQQEQHTFDIILAADCLFF---------------------------DEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred HHHH-----hhhH-HHHhhCcccEEEeccchhH---------------------------HHHHHHHHHHHHHHhCcccc
Confidence 3333 1110 011235899999821 110 02235778888999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHcC
Q psy7093 275 IFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 275 l~~e~~~~~~~~~~~~l~~~~ 295 (322)
.++ ..++.++.+.+++...+
T Consensus 136 Al~-fsPRRg~sL~kF~de~~ 155 (201)
T KOG3201|consen 136 ALL-FSPRRGQSLQKFLDEVG 155 (201)
T ss_pred eeE-ecCcccchHHHHHHHHH
Confidence 665 78888888888877654
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=68.96 Aligned_cols=116 Identities=18% Similarity=0.342 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHhcc--CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 121 ETEELIDIITDKLES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAI---DQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 121 ~te~lv~~i~~~~~~--~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~v---Dis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
....+++.+.+.+.. ....-..+||+|||+|.++..|..+ +..++.+ |..+..++.|-+. |++.-+.+.
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~ 170 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER----GVPAMIGVL 170 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc----Ccchhhhhh
Confidence 345667777666654 2211246899999999999999887 4333322 3344444444322 433211111
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEc---CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSN---PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN 272 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~N---PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g 272 (322)
+. ..++ ++.+.||+|-|- -||+... | .++-++-|+|+||
T Consensus 171 -~s-------~rLP--fp~~~fDmvHcsrc~i~W~~~~-----------------------g-----~~l~evdRvLRpG 212 (506)
T PF03141_consen 171 -GS-------QRLP--FPSNAFDMVHCSRCLIPWHPND-----------------------G-----FLLFEVDRVLRPG 212 (506)
T ss_pred -cc-------cccc--CCccchhhhhcccccccchhcc-----------------------c-----ceeehhhhhhccC
Confidence 11 2233 467899999773 2333322 2 2556678999999
Q ss_pred cEEEEEEc
Q psy7093 273 GSIFLETN 280 (322)
Q Consensus 273 G~l~~e~~ 280 (322)
|++++.-.
T Consensus 213 Gyfv~S~p 220 (506)
T PF03141_consen 213 GYFVLSGP 220 (506)
T ss_pred ceEEecCC
Confidence 99988544
|
; GO: 0008168 methyltransferase activity |
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=57.02 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=46.2
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC------CCHHHHHH
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH------DHLDKIKE 289 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~------~~~~~~~~ 289 (322)
+||+||.||||............ .....++|..+++.+.++| +|.+.+.++. .....+++
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~------------~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~ 67 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK------------KKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK 67 (106)
T ss_pred CcCEEEECCCChhhccccchhhc------------ccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence 69999999999987653321111 1115678999999999988 9999877653 33566777
Q ss_pred HHHHcC
Q psy7093 290 WLGICG 295 (322)
Q Consensus 290 ~l~~~~ 295 (322)
.+....
T Consensus 68 ~l~~~~ 73 (106)
T PF07669_consen 68 FLLNNT 73 (106)
T ss_pred HHhcCC
Confidence 776544
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=62.85 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=58.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..++|+|||-|.+...+..+. --+++-+|.|..+++.++..- ..++ .+....+|- +.++ +.++++|+|
T Consensus 74 p~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE------E~Ld--f~ens~DLi 141 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE------EFLD--FKENSVDLI 141 (325)
T ss_pred cceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-CCce--EEEEEecch------hccc--ccccchhhh
Confidence 679999999999999998873 558999999999998887421 1121 134445553 3443 467899999
Q ss_pred EEcCCCCCCCCC
Q psy7093 221 VSNPPYVPSLDI 232 (322)
Q Consensus 221 v~NPPy~~~~~~ 232 (322)
++....++.++.
T Consensus 142 isSlslHW~NdL 153 (325)
T KOG2940|consen 142 ISSLSLHWTNDL 153 (325)
T ss_pred hhhhhhhhhccC
Confidence 998877776664
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00084 Score=61.18 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~ 185 (322)
.+.+|||+|||.|....++...++ -.+++++|.|+.+++.++.-+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 458999999999988887777766 34799999999999999876543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00029 Score=62.41 Aligned_cols=87 Identities=13% Similarity=0.251 Sum_probs=59.1
Q ss_pred EEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC
Q psy7093 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN 272 (322)
Q Consensus 193 ~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g 272 (322)
+++++|. ++.+. .++.+++|+||.+|||...... ... .. ..+.+..+.+..++.++.++||||
T Consensus 3 ~l~~gD~-----le~l~-~lpd~SVDLIiTDPPY~i~~~~-~~~------~~----~~~~~~~ew~~~~l~E~~RVLKpg 65 (227)
T PRK13699 3 RFILGNC-----IDVMA-RFPDNAVDFILTDPPYLVGFRD-RQG------RT----IAGDKTDEWLQPACNEMYRVLKKD 65 (227)
T ss_pred eEEechH-----HHHHH-hCCccccceEEeCCCccccccc-CCC------cc----cccccHHHHHHHHHHHHHHHcCCC
Confidence 5678888 55543 2567899999999999632110 000 00 112234466789999999999999
Q ss_pred cEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 273 GSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 273 G~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
|.+++-++..+...+...+++.|+
T Consensus 66 g~l~if~~~~~~~~~~~al~~~GF 89 (227)
T PRK13699 66 ALMVSFYGWNRVDRFMAAWKNAGF 89 (227)
T ss_pred CEEEEEeccccHHHHHHHHHHCCC
Confidence 999887777766666677777764
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00068 Score=56.64 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+-+||=|-...+.- ...+..+++..|++..- ..++ +. .|+.-|...+ ..++..+ .++||+|
T Consensus 27 ~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~--~~-~F~fyD~~~p---~~~~~~l-~~~~d~v 90 (162)
T PF10237_consen 27 TRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFG--GD-EFVFYDYNEP---EELPEEL-KGKFDVV 90 (162)
T ss_pred CEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcC--Cc-ceEECCCCCh---hhhhhhc-CCCceEE
Confidence 78999999888776655 23467899999999742 2222 22 4556665211 1223233 5799999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
|++|||... + ...+....+.-++++++.+++.+|....+.+.+++
T Consensus 91 v~DPPFl~~--------e------------------c~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 91 VIDPPFLSE--------E------------------CLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL 135 (162)
T ss_pred EECCCCCCH--------H------------------HHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh
Confidence 999999442 2 24566677777778999999999988888888887
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00046 Score=60.55 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=69.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF-HAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~-~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++..+||+|+-||.|+-.+... +..+|+|+|.....+.+--++ ..|+..+ ..|+ ..+......+..
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~------r~l~~~~~~~~~ 145 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNV------RYLTPEDFTEKP 145 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhc------CCcEEEEecCCh------hhCCHHHcccCC
Confidence 3489999999999999988876 678999999988766553322 3455443 4454 333221123478
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+++++-.|++ ...++..+..+++|+|.++.
T Consensus 146 d~~v~DvSFIS-----------------------------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDVSFIS-----------------------------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CeEEEEeehhh-----------------------------HHHHHHHHHHhcCCCceEEE
Confidence 99999887776 34788888889999888766
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00026 Score=64.89 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=58.4
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
.+++++|. ++.+. .++.++||+|++||||............ .. ..+=.+....++..+.++|||
T Consensus 9 ~~i~~gD~-----~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~---------~~-~~~~~~~l~~~l~~~~rvLK~ 72 (284)
T PRK11524 9 KTIIHGDA-----LTELK-KIPSESVDLIFADPPYNIGKNFDGLIEA---------WK-EDLFIDWLYEWIDECHRVLKK 72 (284)
T ss_pred CEEEeccH-----HHHHH-hcccCcccEEEECCCccccccccccccc---------cc-HHHHHHHHHHHHHHHHHHhCC
Confidence 57889998 55432 2456789999999999653221111000 00 111123457899999999999
Q ss_pred CcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 272 NGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 272 gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
||.+++.++......+..++ +.++ .+...-||
T Consensus 73 ~G~i~i~~~~~~~~~~~~~~-~~~f--~~~~~iiW 104 (284)
T PRK11524 73 QGTMYIMNSTENMPFIDLYC-RKLF--TIKSRIVW 104 (284)
T ss_pred CcEEEEEcCchhhhHHHHHH-hcCc--ceEEEEEE
Confidence 99999987766655444444 3443 24443344
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=59.28 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=35.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||-+|||.|.++..+|.. +..+.|.|.|--|+-..+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHH
Confidence 478999999999999999999 7899999999988755544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00043 Score=60.51 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=46.4
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.|.+-...+++.+++..... +..|||.+||||..+.++... +.+.+|+|+++..++.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t~~---gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTNP---GDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-T---T-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhhcc---ceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 36667788999998887654 379999999999999988887 7899999999999999874
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0009 Score=60.65 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=61.2
Q ss_pred CCeEEEEcCchhHHH-HHHHHh-CCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAIT-ISLLKH-FPKLKAIAIDQSKHACDLTEQNAV-MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~-~~la~~-~~~~~v~~vDis~~al~~A~~n~~-~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|+=+|||.=-++ +.+++. .++..|+++|+++.|++.+++-+. ..++..+++|+.+|. .+. . ..-..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~-----~~~-~--~dl~~ 192 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV-----LDV-T--YDLKE 192 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G-----GGG----GG---
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch-----hcc-c--ccccc
Confidence 469999999966554 444443 357789999999999999998776 567788899999998 322 1 12357
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
||+|+..-- -.+.. || =.+++.+..+.++||..+++=
T Consensus 193 ~DvV~lAal-------Vg~~~-----e~-------------K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVFLAAL-------VGMDA-----EP-------------KEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEEE-TT--------S---------S-------------HHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEEEhhh-------ccccc-----ch-------------HHHHHHHHHhhCCCCcEEEEe
Confidence 999887311 00111 11 147999999999999998874
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00061 Score=62.42 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=53.7
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
-|.+-.+.|++.++...... +..|||.++|||..++++.+. +.+.+|+|++++.++.|++.+..
T Consensus 189 HPt~kP~~L~erlI~~~S~~---GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 189 HPTQKPEALLKRIILASSNP---GDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CcccChHHHHHHHHHHhCCC---CCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 45566688888888877643 379999999999999988777 78999999999999999988753
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00071 Score=59.70 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=49.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC------CCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NV------ANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l------~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||..+|-|.-++.+|.. +.+|+++|.||....+.+.-+++. +. ..|++++++|. .+.+. .
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~-----~~~L~--~ 147 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA-----LEYLR--Q 147 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C-----CCHCC--C
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH-----HHHHh--h
Confidence 48999999999999999876 679999999998876666544332 11 13799999998 66665 3
Q ss_pred CCCCeeEEEEcCCCCCCC
Q psy7093 213 LEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~ 230 (322)
+..+||+|..+|.|....
T Consensus 148 ~~~s~DVVY~DPMFp~~~ 165 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPERK 165 (234)
T ss_dssp HSS--SEEEE--S-----
T ss_pred cCCCCCEEEECCCCCCcc
Confidence 467899999999997644
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0034 Score=54.77 Aligned_cols=161 Identities=13% Similarity=0.140 Sum_probs=95.5
Q ss_pred cCchhHHHHHHHHHHhccCCC-CCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 118 PRSETEELIDIITDKLESSNH-TPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~-~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
+.|-...+...++.-+..... ++.+||-+|..||....+++.-.. ...|+|||.|+...+-.-.-+++- .++-.+
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPI 127 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPI 127 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEE
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeee
Confidence 456667777777666553221 347999999999999999998754 679999999996654433222221 247778
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
..|++-+..... .-+.+|+|+++-.- ++. .+-++.++..+||+||.+
T Consensus 128 l~DAr~P~~Y~~-----lv~~VDvI~~DVaQ----------p~Q------------------a~I~~~Na~~fLk~gG~~ 174 (229)
T PF01269_consen 128 LEDARHPEKYRM-----LVEMVDVIFQDVAQ----------PDQ------------------ARIAALNARHFLKPGGHL 174 (229)
T ss_dssp ES-TTSGGGGTT-----TS--EEEEEEE-SS----------TTH------------------HHHHHHHHHHHEEEEEEE
T ss_pred eccCCChHHhhc-----ccccccEEEecCCC----------hHH------------------HHHHHHHHHhhccCCcEE
Confidence 899843322222 13489999996321 110 346788888999999999
Q ss_pred EEEEcC------CCHH----HHHHHHHHcCCCCceeeEE-EecCCCCCCeEEEE
Q psy7093 276 FLETNH------DHLD----KIKEWLGICGHHMKLKLVE-NYKDFNNKDRFVEL 318 (322)
Q Consensus 276 ~~e~~~------~~~~----~~~~~l~~~~~~~~~~~v~-~~~D~~g~~R~~~~ 318 (322)
++.+.. ..++ ...+.+++.+ |+..+ +.-+-+.++-.++.
T Consensus 175 ~i~iKa~siD~t~~p~~vf~~e~~~L~~~~----~~~~e~i~LePy~~dH~~vv 224 (229)
T PF01269_consen 175 IISIKARSIDSTADPEEVFAEEVKKLKEEG----FKPLEQITLEPYERDHAMVV 224 (229)
T ss_dssp EEEEEHHHH-SSSSHHHHHHHHHHHHHCTT----CEEEEEEE-TTTSTTEEEEE
T ss_pred EEEEecCcccCcCCHHHHHHHHHHHHHHcC----CChheEeccCCCCCCcEEEE
Confidence 987732 1221 1223344433 55543 55666666666554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0079 Score=47.66 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=65.7
Q ss_pred EEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc-cCcCcCC-CCeeE
Q psy7093 143 MIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN-LQPDLLE-QKFDL 219 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~-l~~~~~~-~~fDl 219 (322)
++|+|||+|... .++...+. ..++++|.++.++..++......... .+.+...|. ... ++ +.. ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~--~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADA-----LGGVLP--FEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEecc-----ccCCCC--CCCCCceeE
Confidence 999999999976 33333222 48999999999998855544332111 157777776 321 21 223 47999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+.+........ ....+..+.+.|+|+|.+++....
T Consensus 123 ~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 123 VISLLVLHLLP---------------------------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred EeeeeehhcCC---------------------------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 94433221111 247888889999999998886543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0014 Score=58.08 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=53.7
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
-|.+-...+++.+++..... +..|||.+||||..+++..+. +.+++|+|+++...+.|.+.+...
T Consensus 144 hp~~kP~~l~~~~i~~~s~~---g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 144 HPTEKPVTSLQPLIESFTHP---NAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCcHHHHHHHHHHhCCC---CCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 36666678888888766543 379999999999999988877 788999999999999999887654
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0052 Score=55.06 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=77.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
+.|+=+| -.-..++++|...-..+|..+|+++..++..++-++..|+.+ ++.+..|+ -.++|+.+ ..+||+.
T Consensus 154 K~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dl-----r~plpe~~-~~kFDvf 225 (354)
T COG1568 154 KEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDL-----RNPLPEDL-KRKFDVF 225 (354)
T ss_pred CeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehh-----cccChHHH-HhhCCee
Confidence 5577777 444555666554335689999999999999999999999864 88999998 56665432 4689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC---cEEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN---GSIFLET 279 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g---G~l~~e~ 279 (322)
+.+||+-- .-++.|+.+....||.- |++.+..
T Consensus 226 iTDPpeTi---------------------------~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 226 ITDPPETI---------------------------KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred ecCchhhH---------------------------HHHHHHHhccHHHhcCCCccceEeeee
Confidence 99999743 22568888888888866 5665544
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0021 Score=59.45 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=70.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
...+|+|.|.|.++-.+...+|. |-+++.+...+-.+..+.. .| |+.+-+|. |...| +-|+|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g----V~~v~gdm-----fq~~P------~~daI 240 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG----VEHVAGDM-----FQDTP------KGDAI 240 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC----cceecccc-----cccCC------CcCeE
Confidence 57999999999999999998776 6777777777766666654 44 77788998 66643 23687
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+.- .-.+++..+. ..+|++++++.|+|||.+++
T Consensus 241 ~mk------WiLhdwtDed------------------cvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 241 WMK------WILHDWTDED------------------CVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EEE------eecccCChHH------------------HHHHHHHHHHhCCCCCEEEE
Confidence 762 2233343332 56999999999999998876
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0018 Score=57.41 Aligned_cols=87 Identities=16% Similarity=0.294 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
..+.+.+.+...+. .+.+|+|+|||-=-+++......++..++|+||+...++....-+...+.. .++...|+
T Consensus 91 ~Ld~fY~~if~~~~----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl- 163 (251)
T PF07091_consen 91 NLDEFYDEIFGRIP----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDL- 163 (251)
T ss_dssp GHHHHHHHHCCCS-------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-T-
T ss_pred hHHHHHHHHHhcCC----CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeee-
Confidence 44555555554433 247999999999999998888878899999999999999999888888865 66677788
Q ss_pred CcccccccCcCcCCCCeeEEEE
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVS 222 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~ 222 (322)
+... +....|+.+.
T Consensus 164 ----~~~~----~~~~~DlaLl 177 (251)
T PF07091_consen 164 ----LSDP----PKEPADLALL 177 (251)
T ss_dssp ----TTSH----TTSEESEEEE
T ss_pred ----eccC----CCCCcchhhH
Confidence 4432 3556788776
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0012 Score=61.31 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=51.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.++||+||++|.++-.+++. +.+|++||..+-.- ++ .-..+|+.+..|. +...+. .+.+|
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~-----~L---~~~~~V~h~~~d~-----fr~~p~---~~~vD 272 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQ-----SL---MDTGQVEHLRADG-----FKFRPP---RKNVD 272 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCH-----hh---hCCCCEEEEeccC-----cccCCC---CCCCC
Confidence 4479999999999999999988 67999999665221 11 1145799999988 665432 56899
Q ss_pred EEEEcC
Q psy7093 219 LVVSNP 224 (322)
Q Consensus 219 lIv~NP 224 (322)
+++|+-
T Consensus 273 wvVcDm 278 (357)
T PRK11760 273 WLVCDM 278 (357)
T ss_pred EEEEec
Confidence 999963
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0012 Score=53.59 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
|.|.+.++.++..+...+ ..+.+|+|+|.|.+-++.++. .-...+|+|+++-.+..++-.+-+.++.++..|..-|+
T Consensus 55 pAtteQv~nVLSll~~n~--~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNP--KGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL 131 (199)
T ss_pred CccHHHHHHHHHHccCCC--CCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 456677788888887753 378999999999999999887 24678999999999999999998999988899999888
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0073 Score=50.80 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=80.0
Q ss_pred EcCchhHHHHHHHHhCC-CCEEEEEeCCHH--HHH---HHHHHHHHcCCCCcEEE-EEccCCCcccccccCcCc--CCCC
Q psy7093 146 IGSGTGAITISLLKHFP-KLKAIAIDQSKH--ACD---LTEQNAVMHNVANQLQV-FHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 146 lg~GsG~~~~~la~~~~-~~~v~~vDis~~--al~---~A~~n~~~~~l~~~i~~-~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+|=|.=.++.++++.++ ...++++-.+.. ..+ .+..|+..+.-.+ +.+ +.-|+ ..+...+ ...+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDa------t~l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDA------TKLHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCC------CcccccccccCCc
Confidence 45566677888888877 667777655433 222 2346666553222 333 33455 2222222 4578
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCH---HHHHHHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHL---DKIKEWLGI 293 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~---~~~~~~l~~ 293 (322)
||.||.|-|..... ...-...++. -..++..+++.+..+|+++|.+.+-+...++ -.+.++.++
T Consensus 76 FDrIiFNFPH~G~~-~~~~~~~i~~------------nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~ 142 (166)
T PF10354_consen 76 FDRIIFNFPHVGGG-SEDGKRNIRL------------NRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAE 142 (166)
T ss_pred CCEEEEeCCCCCCC-ccchhHHHHH------------HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHh
Confidence 99999999987511 1111122211 1245789999999999999999998877665 356677777
Q ss_pred cCC
Q psy7093 294 CGH 296 (322)
Q Consensus 294 ~~~ 296 (322)
.|.
T Consensus 143 ~gl 145 (166)
T PF10354_consen 143 AGL 145 (166)
T ss_pred cCC
Confidence 663
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00034 Score=67.11 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=85.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccC-cCcCCCC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ-PDLLEQK 216 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~-~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~-~~~~~~~ 216 (322)
.+.+|||.-|+||.-++..|++.|+. +|++.|.++.+++..++|++.++..+.++..+.|+ .-..- .......
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA-----~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDA-----NVLMYEHPMVAKF 183 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchH-----HHHHHhccccccc
Confidence 34799999999999999999999875 79999999999999999999999888888888887 21111 0112468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
||+|=.+| |.... .|+..|.+.++.||+|.+.
T Consensus 184 FDvIDLDP-yGs~s-----------------------------~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 184 FDVIDLDP-YGSPS-----------------------------PFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cceEecCC-CCCcc-----------------------------HHHHHHHHHhhcCCEEEEE
Confidence 99998874 65433 5888899999999999884
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0057 Score=52.91 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=82.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
|.||..+.... +.+.. ++.+||++|-|-|.+...+...-| .+=+.+|..|+.++..+.+.-.. ..+|.++.+-
T Consensus 85 ~WEtpiMha~A-~ai~t---kggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~ 157 (271)
T KOG1709|consen 85 RWETPIMHALA-EAIST---KGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGR 157 (271)
T ss_pred hhhhHHHHHHH-HHHhh---CCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc--ccceEEEecc
Confidence 55665444332 22222 238999999999999988877744 56678999999998888775432 3458888887
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
| .+.++ .++++.||-|.-+- +..+.. -.+.+.+.+.++|||+|++-+-
T Consensus 158 W-----eDvl~-~L~d~~FDGI~yDT-------y~e~yE-------------------dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 158 W-----EDVLN-TLPDKHFDGIYYDT-------YSELYE-------------------DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred h-----Hhhhc-cccccCcceeEeec-------hhhHHH-------------------HHHHHHHHHhhhcCCCceEEEe
Confidence 7 33333 24567899998741 111111 1457778899999999998664
Q ss_pred Ec
Q psy7093 279 TN 280 (322)
Q Consensus 279 ~~ 280 (322)
-+
T Consensus 206 Ng 207 (271)
T KOG1709|consen 206 NG 207 (271)
T ss_pred cC
Confidence 33
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=60.05 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=54.2
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+++|++||.|.++..+... +-..+.++|+++.+++..+.|... .++++|+ .+.....+ .+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di-----~~~~~~~~-~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------KLIEGDI-----TKIDEKDF-IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCcc-----ccCchhhc-CCCCCEEE
Confidence 6899999999998888776 334578999999999998888632 1456777 22211111 35799999
Q ss_pred EcCCCCCCC
Q psy7093 222 SNPPYVPSL 230 (322)
Q Consensus 222 ~NPPy~~~~ 230 (322)
..||.-..+
T Consensus 68 ~gpPCq~fS 76 (275)
T cd00315 68 GGFPCQPFS 76 (275)
T ss_pred eCCCChhhh
Confidence 999976544
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00053 Score=63.07 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+...+ +..++|..-|.|.-+.++++.+|+.+++|+|.++.|++.|++++... .+++.++++++
T Consensus 7 Vll~Evl~~L~~~~--~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F---- 78 (310)
T PF01795_consen 7 VLLKEVLEALNPKP--GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNF---- 78 (310)
T ss_dssp TTHHHHHHHHT--T--T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-G----
T ss_pred ccHHHHHHhhCcCC--CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccH----
Confidence 45677777777553 37999999999999999999999999999999999999998876644 57899999986
Q ss_pred cccccCc---Cc-CCCCeeEEEEcCC
Q psy7093 204 QVKNLQP---DL-LEQKFDLVVSNPP 225 (322)
Q Consensus 204 ~~~~l~~---~~-~~~~fDlIv~NPP 225 (322)
..+.. .. ...++|-|+.+.-
T Consensus 79 --~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 79 --SNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp --GGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred --HHHHHHHHHccCCCccCEEEEccc
Confidence 22221 11 2357888887653
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00052 Score=64.71 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
.+.+|..+-+-..+++......+.+....+. +..|.|++||.|-+++.++++ +.+|++-|.+++++++.+.|++
T Consensus 219 ~~~~Fk~DfskVYWnsRL~~Eherlsg~fk~----gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 219 GGERFKFDFSKVYWNSRLSHEHERLSGLFKP----GEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred CCeeEEEecceEEeeccchhHHHHHhhccCC----cchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcc
Confidence 4566666655444555545555555554332 368999999999999999998 6999999999999999999999
Q ss_pred HcCCCCc-EEEEEccC
Q psy7093 185 MHNVANQ-LQVFHAEI 199 (322)
Q Consensus 185 ~~~l~~~-i~~~~~D~ 199 (322)
.+.+... ++++..|+
T Consensus 293 lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccccchhheeeecccH
Confidence 9887665 88888887
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.029 Score=50.49 Aligned_cols=145 Identities=12% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhccC-CCCCCeEEEEcCc---hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 123 EELIDIITDKLESS-NHTPTRMIEIGSG---TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 123 e~lv~~i~~~~~~~-~~~~~~iLDlg~G---sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
..++..++..+... +. ..+||+||| .|..--......|.++|+-||++|.++..++.-+.... ..+..++++|
T Consensus 53 R~Fl~RaVr~la~~~GI--rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-~g~t~~v~aD 129 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGI--RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-RGRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHCTT-----EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-TSEEEEEE--
T ss_pred HHHHHHHHHHHHHhcCc--ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-CccEEEEeCC
Confidence 34455556665544 33 579999999 34544444445689999999999999998886654332 2348899999
Q ss_pred CCCcccccccC---cCcC-CCCeeEEEEc-CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 199 IDSKGQVKNLQ---PDLL-EQKFDLVVSN-PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 199 ~~~~~~~~~l~---~~~~-~~~fDlIv~N-PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
+++++.+-.-+ ..+. ..+.-+++.. ..|++..+ + ...++....+.|.||.
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~---------------------d----p~~iv~~l~d~lapGS 184 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDD---------------------D----PAGIVARLRDALAPGS 184 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGC---------------------T----HHHHHHHHHCCS-TT-
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCcc---------------------C----HHHHHHHHHHhCCCCc
Confidence 96654321100 0111 2233343332 12222111 1 3588999999999999
Q ss_pred EEEEEEcCC--CH---HHHHHHHHHcC
Q psy7093 274 SIFLETNHD--HL---DKIKEWLGICG 295 (322)
Q Consensus 274 ~l~~e~~~~--~~---~~~~~~l~~~~ 295 (322)
+|++.+... .+ +.+.+++.+.+
T Consensus 185 ~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 185 YLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 999987532 23 33445555544
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.13 Score=44.19 Aligned_cols=128 Identities=12% Similarity=0.152 Sum_probs=87.2
Q ss_pred ccCchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 117 IPRSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
.+.|....+...+++-+...+ .++.+||=||..||....+++.-.+...+++||.|+....-.-.-++. -+++-.+
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PI 129 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPI 129 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceee
Confidence 356777778877777665322 134799999999999999999988878899999999876544333332 1346677
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
..|+.-+..... .-+..|+|+.+-. + +.. .+-++.++...|++||.+
T Consensus 130 L~DA~~P~~Y~~-----~Ve~VDviy~DVA--------Q--p~Q------------------a~I~~~Na~~FLk~~G~~ 176 (231)
T COG1889 130 LEDARKPEKYRH-----LVEKVDVIYQDVA--------Q--PNQ------------------AEILADNAEFFLKKGGYV 176 (231)
T ss_pred ecccCCcHHhhh-----hcccccEEEEecC--------C--chH------------------HHHHHHHHHHhcccCCeE
Confidence 888822211111 1246899998521 1 110 346788899999999988
Q ss_pred EEEEc
Q psy7093 276 FLETN 280 (322)
Q Consensus 276 ~~e~~ 280 (322)
++.+.
T Consensus 177 ~i~iK 181 (231)
T COG1889 177 VIAIK 181 (231)
T ss_pred EEEEE
Confidence 87664
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0044 Score=57.32 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=51.6
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+++|++||.|.+++.+... .-..+.++|+++.+.+.-+.|.. ....+|+ .+.....++. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di-----~~~~~~~l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP--------EVICGDI-----TEIDPSDLPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT--------EEEESHG-----GGCHHHHHHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc--------ccccccc-----cccccccccc-cceEEE
Confidence 6899999999999998887 22467899999999999988874 5677888 2211111233 599999
Q ss_pred EcCCCCCCCC
Q psy7093 222 SNPPYVPSLD 231 (322)
Q Consensus 222 ~NPPy~~~~~ 231 (322)
.-||.-+.+.
T Consensus 67 ggpPCQ~fS~ 76 (335)
T PF00145_consen 67 GGPPCQGFSI 76 (335)
T ss_dssp EE---TTTST
T ss_pred eccCCceEec
Confidence 9999765443
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0026 Score=55.39 Aligned_cols=111 Identities=21% Similarity=0.329 Sum_probs=72.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK---------LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~---------~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~ 211 (322)
.+++|+|...|..+..+++++-. .++++||+.+-+ -+++ |.-+++|++...-.+.+-..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHHHH
Confidence 68999999999999999887521 249999997632 2232 77789998543322222223
Q ss_pred cCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 212 LLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 212 ~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+...+.|+|||+- |-+ ..++.++..+. .+++...+.-+..+|+|||.++--+
T Consensus 111 fggekAdlVvcDGAPDv--TGlHd~DEy~Q--------------~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDV--TGLHDLDEYVQ--------------AQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCc--cccccHHHHHH--------------HHHHHHHHHHHhheecCCCeeehhh
Confidence 4556899999962 322 22334443332 1334566777889999999988655
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.077 Score=47.36 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=70.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-----HNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-----~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.+||++|+|+|..++.+|.. ..++|+..|... .+...+.|... .++...+.+...+|.+..+.. ...+
T Consensus 88 ~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~-----~~~~ 160 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALL-LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVS-----FRLP 160 (248)
T ss_pred eeEEEecCCccHHHHHHHHH-hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHh-----hccC
Confidence 67999999999888888886 478999999854 44444444322 223334666666662221111 1223
Q ss_pred C-eeEEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC--HHHHHHHH
Q psy7093 216 K-FDLVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH--LDKIKEWL 291 (322)
Q Consensus 216 ~-fDlIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~--~~~~~~~l 291 (322)
. ||+|++ ++-|.+.. +..++.-...+|..+|.++++..-+. .......+
T Consensus 161 ~~~DlilasDvvy~~~~---------------------------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~ 213 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEES---------------------------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLL 213 (248)
T ss_pred CcccEEEEeeeeecCCc---------------------------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHH
Confidence 3 899987 33333221 33566667778888887777665333 33344444
Q ss_pred HH
Q psy7093 292 GI 293 (322)
Q Consensus 292 ~~ 293 (322)
.+
T Consensus 214 ~~ 215 (248)
T KOG2793|consen 214 FK 215 (248)
T ss_pred hh
Confidence 33
|
|
| >KOG3350|consensus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.071 Score=44.74 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHc----CCCceeEecceeecCeEEEeCCCCcccCchh-HHHHHHHHHHhccCCCCCCeEEE
Q psy7093 71 NTELTNDQITHLNKLCECRLA----RMPVQYIIKEWNFRDLTLKMTPPVFIPRSET-EELIDIITDKLESSNHTPTRMIE 145 (322)
Q Consensus 71 ~~~l~~~~~~~~~~~~~rr~~----~~p~~yi~g~~~f~~~~~~v~~~~~iprp~t-e~lv~~i~~~~~~~~~~~~~iLD 145 (322)
...|+.+.+..+++++..+.+ .++..++++.. +.++.. +.|.-.++| ..++...++.... ..+|.-
T Consensus 9 ~~~LsA~aLAaL~eF~aEq~k~~e~~~~~~~~i~~~---~eDwQl--sqfwy~~eta~~La~e~v~~s~e----~~rIac 79 (217)
T KOG3350|consen 9 DLQLSADALAALNEFLAEQQKRIEEEENQSDIIEKI---GEDWQL--SQFWYSDETARKLAAERVEASGE----GSRIAC 79 (217)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhhccCchhhhhhhc---ccchhh--hhhhcCHHHHHHHHHHHHhhccc----CceEEE
Confidence 445788888888888766654 34443444321 111111 112222333 3334444443332 267877
Q ss_pred EcCchhHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcC
Q psy7093 146 IGSGTGAITISLLK-HFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224 (322)
Q Consensus 146 lg~GsG~~~~~la~-~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NP 224 (322)
+.|-|=.+-.-.-. ..|..+|+..|.+.. ...+| -+|+.-|...+ ..++.. ..++||+||++|
T Consensus 80 vS~Psly~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg----~eFvfYDyN~p---~dlp~~-lk~~fdiivaDP 143 (217)
T KOG3350|consen 80 VSCPSLYVYQKKREIEIPHDQVYLFEFDKR--------FELYG----TEFVFYDYNCP---LDLPDE-LKAHFDIIVADP 143 (217)
T ss_pred EeCchHHhhhhhhhccCCceeEEEEEehhh--------HHhcc----ceeEEeccCCC---CCCHHH-HHhcccEEEeCC
Confidence 77776552111111 126778999998753 34444 35666665221 112221 135799999999
Q ss_pred CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHH
Q psy7093 225 PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGI 293 (322)
Q Consensus 225 Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~ 293 (322)
||....- ..+-..-+..+.+++-.+++.+|..-.+.+.+++..
T Consensus 144 PfL~~eC--------------------------l~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~ 186 (217)
T KOG3350|consen 144 PFLSEEC--------------------------LAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPV 186 (217)
T ss_pred ccccchh--------------------------hhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhh
Confidence 9987553 334555567778888889998998877777777653
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.025 Score=49.18 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCCC--CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 123 EELIDIITDKLESSNH--TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~--~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
-.+++|+.+....... .+.++||+||=+....++. .+-..|+.+|+++. .-.+.+.|+
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~----------------~~~I~qqDF- 92 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ----------------HPGILQQDF- 92 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccc---cCceeeEEeecCCC----------------CCCceeecc-
Confidence 4455666555433221 2369999998766544432 23356999999862 134567887
Q ss_pred Ccccccc-cCcCcCCCCeeEEEEcCC--CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE---
Q psy7093 201 SKGQVKN-LQPDLLEQKFDLVVSNPP--YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS--- 274 (322)
Q Consensus 201 ~~~~~~~-l~~~~~~~~fDlIv~NPP--y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~--- 274 (322)
++. ++. ...++||+|++..- |++... - --.+++.+.++|+|+|.
T Consensus 93 ----m~rplp~-~~~e~FdvIs~SLVLNfVP~p~-------~------------------RG~Ml~r~~~fL~~~g~~~~ 142 (219)
T PF11968_consen 93 ----MERPLPK-NESEKFDVISLSLVLNFVPDPK-------Q------------------RGEMLRRAHKFLKPPGLSLF 142 (219)
T ss_pred ----ccCCCCC-CcccceeEEEEEEEEeeCCCHH-------H------------------HHHHHHHHHHHhCCCCccCc
Confidence 432 332 24678999987321 443221 1 12799999999999999
Q ss_pred --EEEEEcC--------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 275 --IFLETNH--------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 275 --l~~e~~~--------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
|++.++. -..+.+.++++.-| |..++..
T Consensus 143 ~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LG----f~~~~~~ 180 (219)
T PF11968_consen 143 PSLFLVLPLPCVTNSRYMTEERLREIMESLG----FTRVKYK 180 (219)
T ss_pred ceEEEEeCchHhhcccccCHHHHHHHHHhCC----cEEEEEE
Confidence 8887642 23677888998876 6666543
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0067 Score=57.34 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=74.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..++|+|||.|.....++.. ....++|+|.++.-+..+..-.....+.++-.++.+|+ .... +++..||.+
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~-----~~~~---fedn~fd~v 182 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF-----GKMP---FEDNTFDGV 182 (364)
T ss_pred ccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh-----hcCC---CCccccCcE
Confidence 57999999999999888776 56899999999988887777666666666666677776 3221 357789988
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
-+. ++..|.| ++ ...+++..+.++|||+.+.+
T Consensus 183 ~~l--------------d~~~~~~--------~~----~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 183 RFL--------------EVVCHAP--------DL----EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEE--------------eecccCC--------cH----HHHHHHHhcccCCCceEEeH
Confidence 762 1112222 22 35667778889999998773
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.00099 Score=57.15 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=59.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+.++||+|+|.|-++..++..+ .+|+++|.|..|....++ .+.. + +-..++ +. .+-+||
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~yn--V-l~~~ew--------~~---t~~k~d 171 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNYN--V-LTEIEW--------LQ---TDVKLD 171 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCCc--e-eeehhh--------hh---cCceee
Confidence 45899999999999999998874 469999999988655442 2211 1 011122 21 234799
Q ss_pred EEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc-CcEEEE
Q psy7093 219 LVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP-NGSIFL 277 (322)
Q Consensus 219 lIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~-gG~l~~ 277 (322)
+|.| |. -.+.|.| -++++.+..+|.| +|.+++
T Consensus 172 li~clNl-------------LDRc~~p--------------~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 172 LILCLNL-------------LDRCFDP--------------FKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred hHHHHHH-------------HHhhcCh--------------HHHHHHHHHHhccCCCcEEE
Confidence 9987 21 1122333 2678888889998 887655
|
|
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.041 Score=50.33 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||-.|||.|.++..+|.. +-++.|-|.|--|+-...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSS 189 (369)
T ss_pred CceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHH
Confidence 368999999999999999998 556777788877764443
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.028 Score=52.59 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=85.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+++|++||.|.+.+.+... +---+.++|+++.+++.-+.|... ..+...|+ .+.....+....+|++
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di-----~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH------GDIILGDI-----KELDGEALRKSDVDVL 71 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC------CceeechH-----hhcChhhccccCCCEE
Confidence 68999999999999888776 223577999999999888877642 34455666 2221111111178999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc----C---CCHHHHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN----H---DHLDKIKEWLGI 293 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~----~---~~~~~~~~~l~~ 293 (322)
+.-||.-..+....- ...-+|...|+ -.+ .++...++| -++++|== . ...+.+.+.|++
T Consensus 72 igGpPCQ~FS~aG~r---~~~~D~R~~L~---------~~~-~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~ 137 (328)
T COG0270 72 IGGPPCQDFSIAGKR---RGYDDPRGSLF---------LEF-IRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEE 137 (328)
T ss_pred EeCCCCcchhhcCcc---cCCcCccceee---------HHH-HHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHH
Confidence 999997654432211 01112222221 122 233445677 56777621 1 134566677777
Q ss_pred cCCCCceeeEEEecC---CCCCCeEEEE
Q psy7093 294 CGHHMKLKLVENYKD---FNNKDRFVEL 318 (322)
Q Consensus 294 ~~~~~~~~~v~~~~D---~~g~~R~~~~ 318 (322)
.|+. ....+-.-+| -..+.|+++.
T Consensus 138 ~GY~-~~~~ilna~dyGvPQ~ReRvfii 164 (328)
T COG0270 138 LGYG-VEFNILNAADYGVPQSRERVFIV 164 (328)
T ss_pred cCCc-chHheeeHHhcCCCCCccEEEEE
Confidence 7751 1112222233 3456777765
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.022 Score=52.82 Aligned_cols=39 Identities=23% Similarity=0.490 Sum_probs=30.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCC-EEEEEeCCHHHHH
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACD 177 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~-~v~~vDis~~al~ 177 (322)
.+.+|||+|.|.|.-..++-.-+|.. .++.++.|+..-+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrk 152 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRK 152 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHH
Confidence 45789999999998888887888864 5778888874433
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.035 Score=50.62 Aligned_cols=73 Identities=16% Similarity=0.319 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
..++..+++.+..... ...+|..-|.|.-+-.+++.+|. .+++|+|.++.|++.|++....++ +|++++++++
T Consensus 9 pVLl~E~i~~L~~~~~--giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 9 PVLLNEVVELLAPKPD--GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred chHHHHHHHhcccCCC--cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 4567788888877643 89999999999999999999875 469999999999999999887665 6799999875
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.014 Score=55.41 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=49.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
..+||+|+|||.+++.++.+- +-.|+++|.=..+.+.|++-..++|.+++|+++.-
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 469999999999999888884 55799999999999999999999999888887754
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.026 Score=54.81 Aligned_cols=135 Identities=12% Similarity=0.225 Sum_probs=81.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKL--KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
..|+|+.+|.|.|+.+|... |-+ +|+-+ ..+..+.+. ..-|+-+ ...|+ -+.++. -..+||
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~vI----ydRGLIG----~yhDW-----CE~fsT--YPRTYD 429 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPVI----YDRGLIG----VYHDW-----CEAFST--YPRTYD 429 (506)
T ss_pred eeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchhh----hhcccch----hccch-----hhccCC--CCcchh
Confidence 46999999999999999765 322 23333 222222222 2223321 33566 444432 356899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHM 298 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~ 298 (322)
+|-+|--|....+. . -...++-+.-|.|+|||++++--...--..++.++..-.|
T Consensus 430 LlHA~~lfs~~~~r-------------C----------~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW-- 484 (506)
T PF03141_consen 430 LLHADGLFSLYKDR-------------C----------EMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRW-- 484 (506)
T ss_pred heehhhhhhhhccc-------------c----------cHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcc--
Confidence 99987544322211 0 1347888899999999999984444445667777777654
Q ss_pred ceeeEEEecCC---CCCCeEEEEEE
Q psy7093 299 KLKLVENYKDF---NNKDRFVELKL 320 (322)
Q Consensus 299 ~~~~v~~~~D~---~g~~R~~~~~~ 320 (322)
+ +.++... .+.+++++++|
T Consensus 485 --~-~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 485 --E-VRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred --e-EEEEecCCCCCCCceEEEEEC
Confidence 2 3333333 44789998876
|
; GO: 0008168 methyltransferase activity |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.0094 Score=51.92 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=40.5
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC----ChhHHHHHHHHHHhccCccCcEEEEEEcCCCHH--HHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH----DGLNIIKPICVFGSNYLKPNGSIFLETNHDHLD--KIKEW 290 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~----~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~--~~~~~ 290 (322)
.|+|+.+|||....+... ..-.++. +=++.+...+.++.++|||||.+++-++..... ....+
T Consensus 1 VdliitDPPY~~~~~~~~-----------~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~ 69 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNN-----------YFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELA 69 (231)
T ss_dssp EEEEEE---TSSSCS----------------CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHH
T ss_pred CCEEEECCCCCCCCCcch-----------hhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHH
Confidence 489999999987665200 0000111 113456788999999999999999988877654 34444
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
.+..|
T Consensus 70 ~~~~g 74 (231)
T PF01555_consen 70 LEIFG 74 (231)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 45444
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.037 Score=43.97 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=53.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+++|+|+|.+.|.-++..+.+ +..+|+++|.++...+..++|++.+.+-++. +...+| +. .-+.||
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~eW---------~~--~Y~~~D 94 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGEW---------NG--EYEDVD 94 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeece-eecccc---------cc--cCCCcc
Confidence 3489999999999999998887 5678999999999999999999877543322 122234 11 235788
Q ss_pred EEEEc
Q psy7093 219 LVVSN 223 (322)
Q Consensus 219 lIv~N 223 (322)
+.+.+
T Consensus 95 i~~iD 99 (156)
T PHA01634 95 IFVMD 99 (156)
T ss_pred eEEEE
Confidence 77763
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.13 Score=49.91 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=72.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+++-+|||.-.++..+-+. .-..|+.+|+|+.+++.....-.+. ..-..+...|. .. + .++.+.||+|
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~-----~~-l--~fedESFdiV 118 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDM-----DQ-L--VFEDESFDIV 118 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccC--CcceEEEEecc-----hh-c--cCCCcceeEE
Confidence 38999999999999888776 4567999999999988776432211 12367778887 22 2 2467889999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhH---HHHHHHHHHhccCccCcEEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN---IIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~---~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+-=+ ..+ +|+.+++..- .....+....++|++||..+..+
T Consensus 119 IdkG------tlD-------------al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 119 IDKG------TLD-------------ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred EecC------ccc-------------cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 8721 111 2222222221 34567788899999999865543
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.32 Score=43.18 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=80.7
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC-CCCeeEEEE
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL-EQKFDLVVS 222 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~-~~~fDlIv~ 222 (322)
|..-|||-.++..+.+. +-++.++|+.|+=....+.|.. -..++.+.++|- +..+...++ .++=-+|+.
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG-----~~~l~a~LPP~erRglVLI 162 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDG-----FLALKAHLPPKERRGLVLI 162 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC---CCcceEEEecCc-----HHHHhhhCCCCCcceEEEe
Confidence 88999999999888776 6789999999988888888876 235699999997 554433333 345679999
Q ss_pred cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc--cCcEEEEEEcCCCHHHHHHHHHHc
Q psy7093 223 NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK--PNGSIFLETNHDHLDKIKEWLGIC 294 (322)
Q Consensus 223 NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk--~gG~l~~e~~~~~~~~~~~~l~~~ 294 (322)
+|||-...+ |+++++.....++ ++|...+=.+--+.+.++++++..
T Consensus 163 DPPfE~~~e--------------------------Y~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L 210 (279)
T COG2961 163 DPPFELKDE--------------------------YQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRAL 210 (279)
T ss_pred CCCcccccH--------------------------HHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHH
Confidence 999976554 4455554444444 567655544445556666666553
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.011 Score=53.67 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=50.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
..|+|+.+|.|++++...-..+...|++.|.+|.+++..++|+..+++..+..++.+|-
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~ 254 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN 254 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc
Confidence 68999999999999944444467899999999999999999999998877777777776
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.35 Score=43.35 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCeEEEEcCchhHHHHHHHHh---C--CCCEEEEEeC--------------------------CHHHHHHHHHHHHHcCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKH---F--PKLKAIAIDQ--------------------------SKHACDLTEQNAVMHNV 188 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~---~--~~~~v~~vDi--------------------------s~~al~~A~~n~~~~~l 188 (322)
+..|+|.||--|..++.++.. + ++.++++.|. ....++..+.|+.++++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 478999999988766655432 2 3556777762 01245566666666664
Q ss_pred -CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc
Q psy7093 189 -ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267 (322)
Q Consensus 189 -~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~ 267 (322)
.+++.++.+.+ .+.++. .+..++-++-.+- + .||| ....++....
T Consensus 155 ~~~~v~~vkG~F-----~dTLp~-~p~~~IAll~lD~------D---------lYes-------------T~~aLe~lyp 200 (248)
T PF05711_consen 155 LDDNVRFVKGWF-----PDTLPD-APIERIALLHLDC------D---------LYES-------------TKDALEFLYP 200 (248)
T ss_dssp SSTTEEEEES-H-----HHHCCC--TT--EEEEEE------------------SHHH-------------HHHHHHHHGG
T ss_pred CcccEEEECCcc-----hhhhcc-CCCccEEEEEEec------c---------chHH-------------HHHHHHHHHh
Confidence 45799999998 455543 2344565555531 1 2444 5678889999
Q ss_pred cCccCcEEEEEEcCC---CHHHHHHHHHHcCC
Q psy7093 268 YLKPNGSIFLETNHD---HLDKIKEWLGICGH 296 (322)
Q Consensus 268 ~Lk~gG~l~~e~~~~---~~~~~~~~l~~~~~ 296 (322)
.|.|||++++. .+. ..+.+.+.+.++|.
T Consensus 201 rl~~GGiIi~D-DY~~~gcr~AvdeF~~~~gi 231 (248)
T PF05711_consen 201 RLSPGGIIIFD-DYGHPGCRKAVDEFRAEHGI 231 (248)
T ss_dssp GEEEEEEEEES-STTTHHHHHHHHHHHHHTT-
T ss_pred hcCCCeEEEEe-CCCChHHHHHHHHHHHHcCC
Confidence 99999999883 333 25668888888874
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.042 Score=49.63 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q psy7093 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 112 ~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~ 191 (322)
.+..+.|.|.+..+++ .... +..++|.|||.|-... ..|...++|.|++...+..|++. + .
T Consensus 26 s~tr~~~Wp~v~qfl~----~~~~----gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~----~---~ 86 (293)
T KOG1331|consen 26 SATRAAPWPMVRQFLD----SQPT----GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS----G---G 86 (293)
T ss_pred cccccCccHHHHHHHh----ccCC----cceeeecccCCcccCc----CCCcceeeecchhhhhccccccC----C---C
Confidence 3444555665544332 2222 3689999999996542 23778899999999988877631 1 1
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
..+..+|+ +.. + .....||.+++ ....+.+...-++ ..++++..+.|+|
T Consensus 87 ~~~~~ad~-----l~~-p--~~~~s~d~~ls------iavihhlsT~~RR-----------------~~~l~e~~r~lrp 135 (293)
T KOG1331|consen 87 DNVCRADA-----LKL-P--FREESFDAALS------IAVIHHLSTRERR-----------------ERALEELLRVLRP 135 (293)
T ss_pred ceeehhhh-----hcC-C--CCCCccccchh------hhhhhhhhhHHHH-----------------HHHHHHHHHHhcC
Confidence 24667777 332 2 35678998876 3344455444332 4789999999999
Q ss_pred CcEEEEE
Q psy7093 272 NGSIFLE 278 (322)
Q Consensus 272 gG~l~~e 278 (322)
||...+-
T Consensus 136 gg~~lvy 142 (293)
T KOG1331|consen 136 GGNALVY 142 (293)
T ss_pred CCceEEE
Confidence 9986653
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.065 Score=51.87 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc----CcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP----DLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~----~~~~~ 215 (322)
...+|-+|-|+|.+...+...+|..++++|+++|.+++.|+.+.....- .+..++-.|- +..+.. .-...
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dG-----l~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADG-----LDFLQRTAKSQQEDI 369 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhc-----hHHHHHHhhcccccc
Confidence 3678999999999999999999999999999999999999998754431 2344444444 322211 11345
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+||+++.+- .+.+.+.+. -|..+ -+...++..+...|.|.|.+++..-
T Consensus 370 ~~dvl~~dv---ds~d~~g~~------~pp~~--------fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 370 CPDVLMVDV---DSKDSHGMQ------CPPPA--------FVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred CCcEEEEEC---CCCCcccCc------CCchH--------HHHHHHHHHHhhccCccceEEEEEe
Confidence 899998742 111111111 11111 1246788888999999999988654
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.3 Score=50.68 Aligned_cols=259 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeec
Q psy7093 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFR 105 (322)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~ 105 (322)
+.+++..-...|..+|.+....+.+-+-+.+-- .-....-...+.+.+..+.++ |+
T Consensus 747 vsqam~kmv~~l~~agle~Et~~Le~lYeSVr~---------rA~~~~sa~~kQ~~Ik~LY~~---------------FF 802 (1518)
T COG4889 747 VSQAMDKMVDKLSDAGLEGETEDLENLYESVRT---------RAAEAKSAKSKQELIKNLYNT---------------FF 802 (1518)
T ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHHHHH---------HHhhccccccHHHHHHHHHHH---------------HH
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHh---------ccCCCCCCeEEEEcCchhHHHHHHHHhCCC---------CEEE
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKL---------ESSNHTPTRMIEIGSGTGAITISLLKHFPK---------LKAI 167 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~---------~~~~~~~~~iLDlg~GsG~~~~~la~~~~~---------~~v~ 167 (322)
...|+-....+----..-++|+.++... ......+.+|||.++|||.+...++..+-. ....
T Consensus 803 k~aFKkqsE~LGIVyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLh 882 (1518)
T COG4889 803 KEAFKKQSEKLGIVYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELH 882 (1518)
T ss_pred HHHHHHhHhhcceeecchhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhh
Q ss_pred EEeCCHHHHHHHHHHHHHc--------------CCCCcEEEEEccCCCcccccccCcCcCCC---CeeEEEEcCCCCCCC
Q psy7093 168 AIDQSKHACDLTEQNAVMH--------------NVANQLQVFHAEIDSKGQVKNLQPDLLEQ---KFDLVVSNPPYVPSL 230 (322)
Q Consensus 168 ~vDis~~al~~A~~n~~~~--------------~l~~~i~~~~~D~~~~~~~~~l~~~~~~~---~fDlIv~NPPy~~~~ 230 (322)
+.||---+.-.|--|+... -+.+.++....|-.+...+....+.+..+ +.-+|+.||||....
T Consensus 883 A~eIvLLsYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gq 962 (1518)
T COG4889 883 AFEIVLLSYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQ 962 (1518)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccc
Q ss_pred CCCCCChhhhcccccccccCCCCh-----------hHHHHHHHHHHhccCccCcEEEEEEcCCC-----HHHHHHHHHHc
Q psy7093 231 DIPKLEPEIALYEDIKALDGGHDG-----------LNIIKPICVFGSNYLKPNGSIFLETNHDH-----LDKIKEWLGIC 294 (322)
Q Consensus 231 ~~~~l~~~v~~~ep~~al~~g~~g-----------l~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-----~~~~~~~l~~~ 294 (322)
.-+.-...-..|+...+..-..-| .|-|-+.++-+.+.++.+|++-|...... .+-++.-+.+.
T Consensus 963 ks~ndnn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~NggfIDgnsaDG~R~sla~d 1042 (1518)
T COG4889 963 KSENDNNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNGGFIDGNSADGFRKSLAQD 1042 (1518)
T ss_pred cCcCccccccccchHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecCceecCccchHHHHHHHHH
Q ss_pred CCCCceeeEEEecCCCCCCe
Q psy7093 295 GHHMKLKLVENYKDFNNKDR 314 (322)
Q Consensus 295 ~~~~~~~~v~~~~D~~g~~R 314 (322)
|..+-+. .+-|..|
T Consensus 1043 -----fs~iYvl-NLrGn~R 1056 (1518)
T COG4889 1043 -----FSHIYVL-NLRGNQR 1056 (1518)
T ss_pred -----hhhheEE-eccCCcc
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=2 Score=38.38 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=79.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK----LKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~----~~v~~vDis~~al~~A~~n~~~~~l~~~i~ 193 (322)
-|.|++.+-....+...... +...+|+|+|+..-+..+...+.. .+.+.+|+|...++..-+.+...-..-.+.
T Consensus 59 TRtEaaIl~~~a~Eia~~~g--~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~ 136 (321)
T COG4301 59 TRTEAAILQARAAEIASITG--ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVN 136 (321)
T ss_pred chhHHHHHHHHHHHHHHhhC--cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEe
Confidence 36677666655555544332 268999999998777666665533 689999999988876555443322111255
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
-+++|. ...+.. ++.+.--+++. ..+.+..+.++. ...|+.+....|+||-
T Consensus 137 ~l~~~~-----~~~La~-~~~~~~Rl~~f-----lGStlGN~tp~e------------------~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 137 ALCGDY-----ELALAE-LPRGGRRLFVF-----LGSTLGNLTPGE------------------CAVFLTQLRGALRPGD 187 (321)
T ss_pred ehhhhH-----HHHHhc-ccCCCeEEEEE-----ecccccCCChHH------------------HHHHHHHHHhcCCCcc
Confidence 667776 333321 22222222222 112223333322 3579999999999999
Q ss_pred EEEEEEcCC
Q psy7093 274 SIFLETNHD 282 (322)
Q Consensus 274 ~l~~e~~~~ 282 (322)
++++-+.-.
T Consensus 188 ~~LlGvDl~ 196 (321)
T COG4301 188 YFLLGVDLR 196 (321)
T ss_pred eEEEecccc
Confidence 998866443
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.4 Score=46.98 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=54.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc--ccc-----CcCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV--KNL-----QPDL 212 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~--~~l-----~~~~ 212 (322)
..+++|++||.|.+...+-.. +...|.++|+++.|.+.-+.|.... + ....+.+|+.+-... ..+ ...+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~--p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCD--P-ATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCC--C-ccceeccChhhCccccccccchhhhhhhh
Confidence 368999999999999988665 3346789999999998888774211 1 133445555110000 000 0000
Q ss_pred --CCCCeeEEEEcCCCCCCCC
Q psy7093 213 --LEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 213 --~~~~fDlIv~NPPy~~~~~ 231 (322)
....+|+++.-||.-+.+.
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~ 184 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSL 184 (467)
T ss_pred hccCCCCCEEEEcCCCCccch
Confidence 1135899999999766543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.12 Score=48.36 Aligned_cols=91 Identities=15% Similarity=0.279 Sum_probs=60.5
Q ss_pred CCeEEEEcC-chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGS-GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~-GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|+=.|+ |.|.+++.+|+... ++|+++|.+++-++.|++ +|.. .++.+ |. +..+.+ .+.|
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGAd---~~i~~~~~---~~~~~~-----~~~~ 230 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGAD---HVINSSDS---DALEAV-----KEIA 230 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCCc---EEEEcCCc---hhhHHh-----HhhC
Confidence 466666665 47789999999875 999999999999888874 3432 22332 11 002222 2249
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+|+..-| . .-+..+.+.|++||.+++ +|
T Consensus 231 d~ii~tv~-~--------------------------------~~~~~~l~~l~~~G~~v~-vG 259 (339)
T COG1064 231 DAIIDTVG-P--------------------------------ATLEPSLKALRRGGTLVL-VG 259 (339)
T ss_pred cEEEECCC-h--------------------------------hhHHHHHHHHhcCCEEEE-EC
Confidence 99988433 1 345667889999999887 44
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.29 Score=50.24 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=76.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC-------C-----CCEEEEEeCCH---HHHHHHHH-----------HHHH-----cCC-
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-------P-----KLKAIAIDQSK---HACDLTEQ-----------NAVM-----HNV- 188 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-------~-----~~~v~~vDis~---~al~~A~~-----------n~~~-----~~l- 188 (322)
.+|+|+|=|+|.-.+...+.+ | ..+++++|..| +-+..+.. -... .++
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 789999999997666665443 2 35899999754 22322221 1111 121
Q ss_pred -----CC--cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 189 -----AN--QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 189 -----~~--~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
.+ +++++.+|+ .+.++. + ...+|+++.++ |.+... ++.+ -..+
T Consensus 139 ~~~~~~~~~~l~l~~gd~-----~~~~~~-~-~~~~d~~~lD~-FsP~~n-----p~~W-----------------~~~~ 188 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDA-----NELLPQ-L-DARADAWFLDG-FAPAKN-----PDMW-----------------SPNL 188 (662)
T ss_pred EEEecCCcEEEEEEecCH-----HHHHHh-c-cccccEEEeCC-CCCccC-----hhhc-----------------cHHH
Confidence 11 345667787 443332 1 25699999985 333222 1211 1368
Q ss_pred HHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
++...++++|||.+.= +.....+++-|...|+
T Consensus 189 ~~~l~~~~~~~~~~~t---~t~a~~vr~~l~~~GF 220 (662)
T PRK01747 189 FNALARLARPGATLAT---FTSAGFVRRGLQEAGF 220 (662)
T ss_pred HHHHHHHhCCCCEEEE---eehHHHHHHHHHHcCC
Confidence 8889999999999863 5677889999998874
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.15 Score=45.55 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=45.3
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCeeEEEE
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDLVVS 222 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~fDlIv~ 222 (322)
+..-+||=.++..+++. +-+.+..|+.+...+..+.|+.. ..++++++.|- ++.+...+ +..+=-+|+.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG-----~~~l~allPP~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDG-----YEGLKALLPPPERRGLVLI 131 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-H-----HHHHHHH-S-TTS-EEEEE
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc---CCccEEEeCch-----hhhhhhhCCCCCCCeEEEE
Confidence 67788999998888776 67899999999999988887654 34799999997 65432222 2345679999
Q ss_pred cCCCCCCCC
Q psy7093 223 NPPYVPSLD 231 (322)
Q Consensus 223 NPPy~~~~~ 231 (322)
+|||-...+
T Consensus 132 DPpYE~~~d 140 (245)
T PF04378_consen 132 DPPYEQKDD 140 (245)
T ss_dssp -----STTH
T ss_pred CCCCCCchH
Confidence 999977655
|
; PDB: 2OO3_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.068 Score=42.29 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=58.1
Q ss_pred chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCC
Q psy7093 149 GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVP 228 (322)
Q Consensus 149 GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~ 228 (322)
|.|..++.+|+..+ .+|+++|.++..++.+++ +|.. .++..+-. ...+.+........+|+|+-..+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~--~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDD--DFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTS--SHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---cccccccc--ccccccccccccccceEEEEecC---
Confidence 57899999999986 999999999998888764 4422 12222110 00111111123357999987422
Q ss_pred CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 229 ~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
....++.+..+|+++|.+++ +|
T Consensus 68 -----------------------------~~~~~~~~~~~l~~~G~~v~-vg 89 (130)
T PF00107_consen 68 -----------------------------SGDTLQEAIKLLRPGGRIVV-VG 89 (130)
T ss_dssp -----------------------------SHHHHHHHHHHEEEEEEEEE-ES
T ss_pred -----------------------------cHHHHHHHHHHhccCCEEEE-EE
Confidence 02577888999999999987 44
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.08 Score=40.82 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS 172 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis 172 (322)
...++|+|||+|.+.--|.++ +...+|+|.-
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R 89 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR 89 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence 367999999999998888887 7788999974
|
; GO: 0008168 methyltransferase activity |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.15 Score=47.38 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=50.8
Q ss_pred EEEEcCchhHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 143 MIEIGSGTGAITISLLKHFPKLK-AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~~~~~-v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
|+|++||.|.++..+... +.+ +.++|+++.+.+.-+.|.. + .+..+|+ .+..... ...+|+++
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di-----~~~~~~~--~~~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDI-----TKISPSD--IPDFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccCh-----hhhhhhh--CCCcCEEE
Confidence 589999999999888766 455 5689999999998888752 2 3345777 2211111 23589999
Q ss_pred EcCCCCCCC
Q psy7093 222 SNPPYVPSL 230 (322)
Q Consensus 222 ~NPPy~~~~ 230 (322)
.-||.-..+
T Consensus 65 gg~PCq~fS 73 (315)
T TIGR00675 65 GGFPCQPFS 73 (315)
T ss_pred ecCCCcccc
Confidence 999965544
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.22 Score=45.38 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=83.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.++++|=+|.|-|......+++-.--++.-+|++...++..++-.... +. ..++.++-+|- +..+.. ...+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG-----~~fl~~-~~~~ 194 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG-----FLFLED-LKEN 194 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH-----HHHHHH-hccC
Confidence 358999999999999888887722247899999999999988876543 33 34799999987 544432 2467
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE--cCCCHHHHHHHH
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET--NHDHLDKIKEWL 291 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~--~~~~~~~~~~~l 291 (322)
+||+|+.+ +.+. .. |..+ -+.+.++....+.||++|+++..- -+-+...+++..
T Consensus 195 ~~dVii~d-----ssdp--vg-------pa~~--------lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r 250 (337)
T KOG1562|consen 195 PFDVIITD-----SSDP--VG-------PACA--------LFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGR 250 (337)
T ss_pred CceEEEEe-----cCCc--cc-------hHHH--------HHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHH
Confidence 99999984 1111 01 1111 124688889999999999987632 233344444443
|
|
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.58 Score=43.26 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+.+||=+|+| .|..+...|+.+..++|+.+|+++..++.|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34789999999 68899999999999999999999999999986
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.43 Score=44.75 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCcccCchhH-----HHHHHHHHHhccCCC-CCCeEEEEcCchhHHHHHHHHhC--------CCCEEEEEeCCHHHHHHH
Q psy7093 114 PVFIPRSETE-----ELIDIITDKLESSNH-TPTRMIEIGSGTGAITISLLKHF--------PKLKAIAIDQSKHACDLT 179 (322)
Q Consensus 114 ~~~iprp~te-----~lv~~i~~~~~~~~~-~~~~iLDlg~GsG~~~~~la~~~--------~~~~v~~vDis~~al~~A 179 (322)
+.|+-.|+.. .+..++++.+..... .+..++++|.|+|.++.-+++.. ...++..+|.|+...+.-
T Consensus 46 GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Q 125 (370)
T COG1565 46 GDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQ 125 (370)
T ss_pred CCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHH
Confidence 4555444443 334555555554332 24689999999999988877653 357999999999988887
Q ss_pred HHHHHHc
Q psy7093 180 EQNAVMH 186 (322)
Q Consensus 180 ~~n~~~~ 186 (322)
+++++..
T Consensus 126 k~~L~~~ 132 (370)
T COG1565 126 KETLKAT 132 (370)
T ss_pred HHHHhcc
Confidence 7777654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.49 Score=42.30 Aligned_cols=83 Identities=6% Similarity=0.070 Sum_probs=49.4
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCH---HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSK---HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-- 212 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~---~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-- 212 (322)
+++|=.|.++ +.++.++++.+ .+++|+.++.+. +.++... .... ..++.++..|+.++...+.+....
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~---~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELA---DTLE-GQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHH---HHcC-CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 6788888763 66777766654 367888886542 3333222 2221 235788899996655433221111
Q ss_pred CCCCeeEEEEcCCCC
Q psy7093 213 LEQKFDLVVSNPPYV 227 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~ 227 (322)
..+++|++|.|..+.
T Consensus 84 ~~g~ld~lv~nag~~ 98 (257)
T PRK08594 84 EVGVIHGVAHCIAFA 98 (257)
T ss_pred hCCCccEEEECcccC
Confidence 136799999998654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.34 Score=43.46 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=35.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP--------KLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~--------~~~v~~vDis~~al~~A~~n~~~ 185 (322)
.+|+|+|+|+|.++.-++..+. ..+++.||.|+...+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 6899999999999998888643 35899999999888887777654
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.57 Score=42.73 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=50.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
|.+....+.+..+..... ++..|||..+|||..+++.... +..++|+|+++..++.+.+.+...
T Consensus 204 p~~~P~~l~~r~i~~~s~---~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 204 PAQKPLALIERLIRDYSF---PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCChHHHHHHHHHhcCC---CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 455556777777766332 3489999999999999887776 788999999999999999887654
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.39 Score=47.06 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=53.5
Q ss_pred CeEEEEcCchhHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKH----FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~----~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
.+|+=+|.|-|-+.-+..+. ....+++++|.+|.|+...+. .......++|+++.+|. ..++. +..+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DM------R~w~a--p~eq 439 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDM------RKWNA--PREQ 439 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccc------cccCC--chhh
Confidence 46889999999775544432 234689999999999877654 55556678999999998 33331 2367
Q ss_pred eeEEEEc
Q psy7093 217 FDLVVSN 223 (322)
Q Consensus 217 fDlIv~N 223 (322)
.|++||-
T Consensus 440 ~DI~VSE 446 (649)
T KOG0822|consen 440 ADIIVSE 446 (649)
T ss_pred ccchHHH
Confidence 8999983
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.76 Score=42.00 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cC
Q psy7093 139 TPTRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LL 213 (322)
Q Consensus 139 ~~~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~ 213 (322)
.+..||==|.|+| .++..+|++ +++++..|++....+...+.++..| ++..+..|+.+..+...+... -.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 3467888888888 567777777 6799999999999988888888775 588899998543322221111 13
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 214 EQKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.+..|++|.|.--.+....-+++++.
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~e 137 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEE 137 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHH
Confidence 46899999998877777666655543
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.88 Score=40.71 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=51.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.+++.+......+...+ .++.++..|+.++.....+.... ..++
T Consensus 10 k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 10 KNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5677777666543 36789999998877655544444333 34778899985544332211100 1246
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|++|.|...
T Consensus 87 iD~vi~~ag~ 96 (264)
T PRK07576 87 IDVLVSGAAG 96 (264)
T ss_pred CCEEEECCCC
Confidence 8999998753
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.46 Score=45.24 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.3
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+.+||..|+|+ |.+++.+|+..+..+++++|.+++.++.+++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 46899999998 99999999997655799999999988887753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.66 Score=41.41 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=50.5
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+++|+.++.+....+.+++-.+..+ .+.++..|+.+....+.+.... ..+
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 6788888776 36777666654 36789989988654433333222222 2456788985544332221111 125
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+.|++|.|.-+.+
T Consensus 88 ~ld~lv~nAg~~~ 100 (258)
T PRK07533 88 RLDFLLHSIAFAP 100 (258)
T ss_pred CCCEEEEcCccCC
Confidence 7899999986543
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=1 Score=40.29 Aligned_cols=85 Identities=6% Similarity=0.056 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~f 217 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.++..++.+.+.+.... ..++.++..|+.++...+.+... ...++.
T Consensus 9 k~~lItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 9 KLAFTTAS-SKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 55665554 445555555543 36799999999887776665554321 23588899999665433322111 112578
Q ss_pred eEEEEcCCCC
Q psy7093 218 DLVVSNPPYV 227 (322)
Q Consensus 218 DlIv~NPPy~ 227 (322)
|++|.|.-..
T Consensus 87 D~lv~nag~~ 96 (263)
T PRK08339 87 DIFFFSTGGP 96 (263)
T ss_pred cEEEECCCCC
Confidence 9999987543
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.79 Score=40.77 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=48.9
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|.++ +.++.++++.+ .+.+|+.++.+....+.++ ... ..++.++..|+.++...+.+.... ..+
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~----~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQ----KLV-DEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHH----hhc-cCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 6788777664 56666666654 3678998887744332222 211 234778899996544333221111 126
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
++|++|.|..+.
T Consensus 83 ~iD~lv~nAg~~ 94 (252)
T PRK06079 83 KIDGIVHAIAYA 94 (252)
T ss_pred CCCEEEEccccc
Confidence 799999998764
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.85 Score=40.37 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|++ |.++.++++.+ .+.+|+.++.+++.++.....+...+ .++.++..|+.++.....+.... ..++
T Consensus 10 k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 10 KRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 677777754 45555555443 26799999999888776665555443 35788899985544332211100 1257
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|++|.|......
T Consensus 87 id~lv~~ag~~~~ 99 (253)
T PRK05867 87 IDIAVCNAGIITV 99 (253)
T ss_pred CCEEEECCCCCCC
Confidence 8999999876543
|
|
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.77 Score=43.32 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=34.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
..++|+|.|-|.++..++-.+ +..|+++|-|..+.+.|++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 679999999999999998886 6899999999777666654
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.87 Score=40.38 Aligned_cols=127 Identities=10% Similarity=0.169 Sum_probs=75.9
Q ss_pred CchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 119 RSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.|-...|...++--+.... .+..+||=||+++|..-..+..-. |...|++||.|+.+=...- |..+.. . +|-.+.
T Consensus 135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkR-t-NiiPIi 211 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKR-T-NIIPII 211 (317)
T ss_pred ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhcc-C-Cceeee
Confidence 4445555555543332211 144799999999999877777654 5678999999875533222 211111 2 355566
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
-|++-+.... ..-+-.|+|+++-|-. +-.+.+.-++..+||+||.++
T Consensus 212 EDArhP~KYR-----mlVgmVDvIFaDvaqp----------------------------dq~RivaLNA~~FLk~gGhfv 258 (317)
T KOG1596|consen 212 EDARHPAKYR-----MLVGMVDVIFADVAQP----------------------------DQARIVALNAQYFLKNGGHFV 258 (317)
T ss_pred ccCCCchhee-----eeeeeEEEEeccCCCc----------------------------hhhhhhhhhhhhhhccCCeEE
Confidence 6762211111 1124689999964311 113456678899999999999
Q ss_pred EEEcC
Q psy7093 277 LETNH 281 (322)
Q Consensus 277 ~e~~~ 281 (322)
+.+..
T Consensus 259 isika 263 (317)
T KOG1596|consen 259 ISIKA 263 (317)
T ss_pred EEEec
Confidence 98754
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.2 Score=37.87 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=54.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+++|=.|+ +|.++..++..+ .+.+|++++.+++.++.+...+.... ..++.++..|+.++.....+.. ..++.|
T Consensus 8 k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~--~~g~id 83 (259)
T PRK06125 8 KRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAA--EAGDID 83 (259)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHH--HhCCCC
Confidence 56776675 455665555433 26799999999887766655554332 2357888999855443322211 125789
Q ss_pred EEEEcCCCCCCCCC
Q psy7093 219 LVVSNPPYVPSLDI 232 (322)
Q Consensus 219 lIv~NPPy~~~~~~ 232 (322)
.+|.|+-.......
T Consensus 84 ~lv~~ag~~~~~~~ 97 (259)
T PRK06125 84 ILVNNAGAIPGGGL 97 (259)
T ss_pred EEEECCCCCCCCCc
Confidence 99999865443333
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.4 Score=38.99 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=53.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++.++++.+ .+.+|+.+|.+...++.....+....-..++.++..|+.+......+.... ..++
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4577766 5666666666544 367999999988766555444332211135888999985433222111100 1257
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|.||.|..+.....
T Consensus 82 id~vv~~ag~~~~~~ 96 (259)
T PRK12384 82 VDLLVYNAGIAKAAF 96 (259)
T ss_pred CCEEEECCCcCCCCC
Confidence 899999986554433
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.8 Score=38.32 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.+++.++.....+...+...++.++..|+.++.....+.... ..+.
T Consensus 8 k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 86 (260)
T PRK07063 8 KVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP 86 (260)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56776665 455666555543 367999999998887766665554222345888999995544332211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.+|.|....
T Consensus 87 id~li~~ag~~ 97 (260)
T PRK07063 87 LDVLVNNAGIN 97 (260)
T ss_pred CcEEEECCCcC
Confidence 89999987643
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.9 Score=36.20 Aligned_cols=91 Identities=18% Similarity=0.315 Sum_probs=54.7
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
+++..+|+ .+.++. ....||+|+.++ |.+.... +. +. ..+++.+.++++|
T Consensus 33 L~L~~gDa-----~~~l~~--l~~~~Da~ylDg-FsP~~nP-----el--Ws---------------~e~~~~l~~~~~~ 82 (124)
T PF05430_consen 33 LTLWFGDA-----REMLPQ--LDARFDAWYLDG-FSPAKNP-----EL--WS---------------EELFKKLARLSKP 82 (124)
T ss_dssp EEEEES-H-----HHHHHH--B-T-EEEEEE-S-S-TTTSG-----GG--SS---------------HHHHHHHHHHEEE
T ss_pred EEEEEcHH-----HHHHHh--CcccCCEEEecC-CCCcCCc-----cc--CC---------------HHHHHHHHHHhCC
Confidence 56677787 333332 236899999985 5554432 21 11 2688889999999
Q ss_pred CcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 272 NGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 272 gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
||.+.- +.....+++-|...| |. |+..+-.-++.-++.+.+
T Consensus 83 ~~~l~T---ys~a~~Vr~~L~~aG----F~-v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 83 GGTLAT---YSSAGAVRRALQQAG----FE-VEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp EEEEEE---S--BHHHHHHHHHCT----EE-EEEEE-STTSSEEEEEEC
T ss_pred CcEEEE---eechHHHHHHHHHcC----CE-EEEcCCCCCcchheEEEc
Confidence 998754 556677999999987 54 555665555555666654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=90.06 E-value=6.2 Score=34.45 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=53.2
Q ss_pred CeEEEEcCchh----HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTG----AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG----~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
..|++.+|+.| .++++.|.+.-+.+++++-.++..+...++.+...++.+.++|+.++. .+.+-. .-..
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~-----~e~~~~--~~~~ 115 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA-----PEEVMP--GLKG 115 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC-----HHHHHh--hccC
Confidence 67999976644 456666666667899999999888888888887778777789988875 222111 1235
Q ss_pred eeEEEEc
Q psy7093 217 FDLVVSN 223 (322)
Q Consensus 217 fDlIv~N 223 (322)
.|+++.+
T Consensus 116 iDF~vVD 122 (218)
T PF07279_consen 116 IDFVVVD 122 (218)
T ss_pred CCEEEEe
Confidence 7877763
|
The function of this family is unknown. |
| >KOG3924|consensus | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.44 Score=45.05 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=62.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEEE
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-------HNV-ANQLQVF 195 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-------~~l-~~~i~~~ 195 (322)
.....+.+.++.. +.....|+|+|.|.....+|..-....-+|+++....-+.|..|... .|- .+.+..+
T Consensus 179 ~ql~si~dEl~~g--~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 179 EQLRSIVDELKLG--PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred HHHHHHHHHhccC--CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 3344555555544 33789999999999998888876566778999887777777666432 232 4568888
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
+++..++.....+ ....++|++|
T Consensus 257 ~gsf~~~~~v~eI-----~~eatvi~vN 279 (419)
T KOG3924|consen 257 HGSFLDPKRVTEI-----QTEATVIFVN 279 (419)
T ss_pred ccccCCHHHHHHH-----hhcceEEEEe
Confidence 9988443322222 3457888886
|
|
| >PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.5 Score=37.02 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=40.6
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHH-HHHHHHcC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI-KEWLGICG 295 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~-~~~l~~~~ 295 (322)
||+|+++||+........- ..-..|.... .+.+.++ -+.+++.++|++++=+.+.+.... .+++..=|
T Consensus 1 fdvI~~DPPW~~~~~~~~~-~~~~~Y~tm~--------~~~i~~L--pv~~l~~~~~~lflWvTn~~~~~~~~~l~~~WG 69 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKG-GAEAHYPTMS--------LDEIKSL--PVPQLAAPGALLFLWVTNSQLPEAKLELFPAWG 69 (176)
T ss_pred CCEEEEeCCCCCcCccccc-ccccCCCccC--------HHHHHhC--CHHHhCCCCcEEEEEeccchhhHHHHHHHHhCC
Confidence 7999999999765421110 0000111110 1111111 255777888888886666666666 78887755
Q ss_pred CCCceeeEE
Q psy7093 296 HHMKLKLVE 304 (322)
Q Consensus 296 ~~~~~~~v~ 304 (322)
|..++
T Consensus 70 ----f~~~~ 74 (176)
T PF05063_consen 70 ----FEYVT 74 (176)
T ss_pred ----CEEEE
Confidence 55553
|
It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.3 Score=39.69 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.|+| .|.+++.+|+.....+|+++|.+++.++.+++
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 3677777765 56777888888655579999999998887763
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=1.8 Score=39.11 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=47.7
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+++|+.++.+....+.+++-....+ .+ .++..|+.+....+.+.... ..+
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5777777652 45666666543 36789999988543223332223333 22 46788985544332221111 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
++|++|.|.-+.
T Consensus 83 ~iDilVnnAG~~ 94 (274)
T PRK08415 83 KIDFIVHSVAFA 94 (274)
T ss_pred CCCEEEECCccC
Confidence 799999998764
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.45 Score=42.46 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
.++.++.+.++... ..+++|++||+|.++..+.. +..+|+.-|+++......+
T Consensus 7 ~l~~~I~~~ip~~~--~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNK--HKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S---SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCC--CCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHH
Confidence 35667777777521 27999999999999988766 3678999999997765554
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.9 Score=38.36 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+....-..++.++..|+.+......+.... ..++
T Consensus 9 k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07062 9 RVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGG 87 (265)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 5677666 4555555555543 367899999998877766655543321235778889985544332211100 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|..+..
T Consensus 88 id~li~~Ag~~~ 99 (265)
T PRK07062 88 VDMLVNNAGQGR 99 (265)
T ss_pred CCEEEECCCCCC
Confidence 899999976543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.12 E-value=1.1 Score=39.89 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=49.5
Q ss_pred CeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSK--HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~--~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
++++=.|+| ++.++.++++.+ .+.+|+.++.+. +.++.... ..+ .++.++..|+.++...+.+.... .
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLP--EPAPVLELDVTNEEHLASLADRVREH 82 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcC--CCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence 678888875 677777777654 367899888653 33333222 222 24678889985544332221110 1
Q ss_pred CCCeeEEEEcCCCC
Q psy7093 214 EQKFDLVVSNPPYV 227 (322)
Q Consensus 214 ~~~fDlIv~NPPy~ 227 (322)
.+++|++|.|.-+.
T Consensus 83 ~g~iD~li~nAG~~ 96 (256)
T PRK07889 83 VDGLDGVVHSIGFA 96 (256)
T ss_pred cCCCcEEEEccccc
Confidence 36799999998654
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=1.8 Score=38.80 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=48.0
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+.+|+.++.+....+.+++ +.... .++.++..|+.++...+.+.... ..+
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 83 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--GSDIVLPCDVAEDASIDAMFAELGKVWP 83 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--CCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence 5677778765 36665555544 36788888876432222222 21111 23567889986654433321110 135
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
++|++|.|..+.+
T Consensus 84 ~iD~linnAg~~~ 96 (262)
T PRK07984 84 KFDGFVHSIGFAP 96 (262)
T ss_pred CCCEEEECCccCC
Confidence 7899999987643
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.79 E-value=3 Score=36.94 Aligned_cols=87 Identities=8% Similarity=0.184 Sum_probs=49.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.+.. +.+...+...+ .++.++..|+.++.....+.... ..++
T Consensus 9 k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 67776664 556666665543 3678988887542 22223333333 45888999996654333221100 1357
Q ss_pred eeEEEEcCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDI 232 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~ 232 (322)
.|++|.|..+......
T Consensus 84 iD~lv~~ag~~~~~~~ 99 (251)
T PRK12481 84 IDILINNAGIIRRQDL 99 (251)
T ss_pred CCEEEECCCcCCCCCc
Confidence 8999999876544333
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=4.1 Score=40.45 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+|+=+|+| .|..++..|+.++ +.|+++|.+++.++.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 46899999999 5778888888875 589999999999888774
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=2.2 Score=37.06 Aligned_cols=81 Identities=10% Similarity=0.176 Sum_probs=50.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.++|=.| |+|.++..+++.+ .+.+|++++.++.........+... .++.++.+|+.+...+....... ..+.
T Consensus 7 ~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 7 KVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5777777777654 3678999999887766554444322 35888999985443322211100 1246
Q ss_pred eeEEEEcCC
Q psy7093 217 FDLVVSNPP 225 (322)
Q Consensus 217 fDlIv~NPP 225 (322)
+|.||.+..
T Consensus 83 ~d~vi~~ag 91 (237)
T PRK07326 83 LDVLIANAG 91 (237)
T ss_pred CCEEEECCC
Confidence 899998754
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=3.5 Score=36.42 Aligned_cols=86 Identities=8% Similarity=0.112 Sum_probs=52.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|+.++.+++.++....++....-..++.++..|+.++.....+... ...++
T Consensus 10 k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 88 (257)
T PRK09242 10 QTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDG 88 (257)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56776665 455555555543 26789999998887776666654432124588889998544322211110 01357
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.+|.|..+.
T Consensus 89 id~li~~ag~~ 99 (257)
T PRK09242 89 LHILVNNAGGN 99 (257)
T ss_pred CCEEEECCCCC
Confidence 89999988664
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=2.2 Score=38.44 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=48.6
Q ss_pred CeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|++ ++.++.++++.+ .+.+|+.+..+....+.+++.....+ ....++.|+.++...+.+.... ..+
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~~g 87 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKKWG 87 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHhcC
Confidence 567777775 466777766654 36788887765433333333333332 2456789986554333221111 235
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|++|.|.-+.
T Consensus 88 ~iD~lv~nAG~~ 99 (272)
T PRK08159 88 KLDFVVHAIGFS 99 (272)
T ss_pred CCcEEEECCccc
Confidence 789999998654
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=2.4 Score=37.85 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=45.8
Q ss_pred CeEEEEcCchh-HHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTG-AITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG-~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++| .++.++++.+ .+++|+.++.++...+.+++.....+ ...++..|+.++...+.+.... ..+
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---CNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---CceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56777777653 4555554433 36789888877533333333322222 1235678986554333221110 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|++|.|..+.
T Consensus 86 ~iDilVnnag~~ 97 (260)
T PRK06603 86 SFDFLLHGMAFA 97 (260)
T ss_pred CccEEEEccccC
Confidence 799999998654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=2.5 Score=37.35 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=55.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.+......+... ...++
T Consensus 11 k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 11 RRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 6777666 6777777777654 36799999999887766655555433 3478888998554433222110 01256
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.....
T Consensus 88 ~d~li~~ag~~~ 99 (255)
T PRK07523 88 IDILVNNAGMQF 99 (255)
T ss_pred CCEEEECCCCCC
Confidence 899999986654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=3.1 Score=38.82 Aligned_cols=85 Identities=9% Similarity=0.094 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|+.++.+++.++...+.+...+ .++.++.+|+.+....+.+.... ..++
T Consensus 9 k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 9 QVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 4566555 5566666665543 36799999999988877766666544 35888999996544333221100 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|.....
T Consensus 86 iD~lInnAg~~~ 97 (334)
T PRK07109 86 IDTWVNNAMVTV 97 (334)
T ss_pred CCEEEECCCcCC
Confidence 899999976543
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.70 E-value=1.6 Score=35.60 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=33.9
Q ss_pred EEcCchh--HHHHHHH--HhCCCCEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEccC
Q psy7093 145 EIGSGTG--AITISLL--KHFPKLKAIAIDQSKHACDLTEQN--AVMHNVANQLQVFHAEI 199 (322)
Q Consensus 145 Dlg~GsG--~~~~~la--~~~~~~~v~~vDis~~al~~A~~n--~~~~~l~~~i~~~~~D~ 199 (322)
|+|+..| .....++ ...+..+|+++|.++..++..+.| +..++..+.++++...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 5555443 345778999999999999999999 66554433456555443
|
; PDB: 2PY6_A. |
| >KOG2782|consensus | Back alignment and domain information |
|---|
Probab=87.57 E-value=0.68 Score=40.41 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=57.7
Q ss_pred CCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 114 PVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+.-.|.|....+++.+++.+.+.. ....+|..-|+|.-+.++....+..++++.|.+|.|-++|+...
T Consensus 20 ~d~~~~~HVPVm~devl~~lspv~--g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 20 GDEVPSSHVPVMLDEVLDILSPVR--GRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred cccccccCCceehhhHHHHcCCCC--CceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 344566666778899999888764 37899999999999999999999999999999999999888765
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=2.8 Score=37.77 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|+|.++..+++.+ .+.+|+.+|.+...++.....+...+ .++.++.+|+.+....+.+.... ..++
T Consensus 7 k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 7 KVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5676 5556677777776644 36789999998877665544443333 34888999995543332211100 1246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|+|+.|......
T Consensus 84 id~vi~~Ag~~~~ 96 (287)
T PRK06194 84 VHLLFNNAGVGAG 96 (287)
T ss_pred CCEEEECCCCCCC
Confidence 8999999876543
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=3.4 Score=36.71 Aligned_cols=84 Identities=10% Similarity=0.156 Sum_probs=50.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~f 217 (322)
.++|=.| |+|.++..+++.+ .+.+|++++.+++.++.....+ ....++.++..|+.+......+.... ..+..
T Consensus 6 ~~vlItG-~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 6 KRVLLTG-ASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL---PYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 4566555 4455555555433 3679999999987766554433 12346889999985543322211100 12568
Q ss_pred eEEEEcCCCCC
Q psy7093 218 DLVVSNPPYVP 228 (322)
Q Consensus 218 DlIv~NPPy~~ 228 (322)
|.+|.|..+..
T Consensus 82 d~lv~~ag~~~ 92 (263)
T PRK09072 82 NVLINNAGVNH 92 (263)
T ss_pred CEEEECCCCCC
Confidence 99999976654
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.44 E-value=2.8 Score=36.06 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAID 170 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vD 170 (322)
+.+|+|+-.|+|.++.-++... |...|+++=
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~ 80 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYV 80 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEec
Confidence 3789999999999999888765 334666654
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=87.42 E-value=2.5 Score=38.80 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||..|+| .|..++.+|+.. +.+|++++.++...+.++
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH
Confidence 3678888876 488888888886 577999999988776664
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=2.5 Score=36.93 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=52.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|+|.++..+++.+ .+.+|++++.+++.+......++..+ .++.++..|+.+......+.... ..++
T Consensus 8 ~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 8 KRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5676 4456788888877654 35789999988877665555444333 35889999995543222211100 1157
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|.-..
T Consensus 85 id~vi~~ag~~ 95 (250)
T PRK12939 85 LDGLVNNAGIT 95 (250)
T ss_pred CCEEEECCCCC
Confidence 89999986543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=5 Score=36.57 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+++.++...+.+ +...++..+..|+.+......+.... ..++
T Consensus 10 k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 10 KVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5677555 5566666666544 3679999999988766544333 21234666678985543322211100 1257
Q ss_pred eeEEEEcCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDI 232 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~ 232 (322)
.|++|.|.-......+
T Consensus 86 id~vI~nAG~~~~~~~ 101 (296)
T PRK05872 86 IDVVVANAGIASGGSV 101 (296)
T ss_pred CCEEEECCCcCCCcCc
Confidence 8999999876543333
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.04 E-value=3.1 Score=36.45 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=46.1
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
++| +..|+|.++..+++.+ .+.+|+.++.+++.++.... .+ .++.++.+|+.+......+..... ...|.
T Consensus 3 ~vl-ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~D~~~~~~~~~~~~~~~-~~~d~ 74 (240)
T PRK06101 3 AVL-ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT----QS--ANIFTLAFDVTDHPGTKAALSQLP-FIPEL 74 (240)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----hc--CCCeEEEeeCCCHHHHHHHHHhcc-cCCCE
Confidence 455 3445677777777654 36789999998876543322 11 247888999965443332211111 23578
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
++.|....
T Consensus 75 ~i~~ag~~ 82 (240)
T PRK06101 75 WIFNAGDC 82 (240)
T ss_pred EEEcCccc
Confidence 88887643
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=3.2 Score=38.75 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=56.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |||.++.++++.+ .+.+|+.++.+++.++...+.++..+ .++.++..|+.+......+.... ..++
T Consensus 8 k~vlITG-As~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 8 AVVVITG-ASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CEEEEcC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5566555 4566666665543 36799999999998887777766554 34778889985544332221100 1257
Q ss_pred eeEEEEcCCCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDIPK 234 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~ 234 (322)
+|++|.|..+.....+..
T Consensus 85 iD~lVnnAG~~~~~~~~~ 102 (330)
T PRK06139 85 IDVWVNNVGVGAVGRFEE 102 (330)
T ss_pred CCEEEECCCcCCCCCccc
Confidence 899999986544433333
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.00 E-value=2.5 Score=43.65 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=52.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+++|.++..++.+...+... .++.++..|+.++......... ...+.
T Consensus 423 k~vLVTG-asggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 423 KVALVTG-AAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4566554 4566666666543 3579999999988776655443221 3588899998554432221100 01247
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
+|+||.|..+.....
T Consensus 499 iDvvI~~AG~~~~~~ 513 (681)
T PRK08324 499 VDIVVSNAGIAISGP 513 (681)
T ss_pred CCEEEECCCCCCCCC
Confidence 899999987654443
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=85.98 E-value=5.6 Score=37.33 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=15.3
Q ss_pred CCeEEEEcCchhHHHHHHHHh
Q psy7093 140 PTRMIEIGSGTGAITISLLKH 160 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~ 160 (322)
+.+|+|+||.+|.-++.+...
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHH
T ss_pred ceEEEecCCCCCccHHHHHHH
Confidence 468999999999888777653
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=85.92 E-value=2.1 Score=38.21 Aligned_cols=85 Identities=8% Similarity=0.108 Sum_probs=47.0
Q ss_pred CeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCHH--HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSKH--ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~~--al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
+++|=.|++ ++.++.++++.+ .+.+|+.+..+.+ ..+.....+...+ .++.++..|+.++.....+.... .
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL--NPSLFLPCDVQDDAQIEETFETIKQK 84 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc--CcceEeecCcCCHHHHHHHHHHHHHH
Confidence 678888874 577777777654 3678877754322 1111111121111 23567889985544332221111 1
Q ss_pred CCCeeEEEEcCCCC
Q psy7093 214 EQKFDLVVSNPPYV 227 (322)
Q Consensus 214 ~~~fDlIv~NPPy~ 227 (322)
.++.|++|.|..+.
T Consensus 85 ~g~iD~lv~nag~~ 98 (258)
T PRK07370 85 WGKLDILVHCLAFA 98 (258)
T ss_pred cCCCCEEEEccccc
Confidence 35799999998764
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.86 E-value=3 Score=36.51 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=47.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=. .|+|.++..+++.+ .+.+|++++.++..+....+. .+ .++.+++.|+.+......+.... ..++
T Consensus 7 k~vlIt-Gasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 7 KTALIT-GGTSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LG--ESALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CEEEEe-CCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 445444 45666766666543 357899999987655443322 22 34778888874322211111000 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
+|.+|.|..+..
T Consensus 81 id~vi~~ag~~~ 92 (249)
T PRK06500 81 LDAVFINAGVAK 92 (249)
T ss_pred CCEEEECCCCCC
Confidence 899999987654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=5.5 Score=35.41 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.... ..+ .++.++.+|+.++.....+.... ..++
T Consensus 7 k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 7 KVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG--ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 5666655 5556666666543 36799999998765443332 222 35888999995544332211100 1256
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|..+.
T Consensus 81 id~lv~~ag~~ 91 (261)
T PRK08265 81 VDILVNLACTY 91 (261)
T ss_pred CCEEEECCCCC
Confidence 89999998654
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=85.62 E-value=2 Score=34.24 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=33.0
Q ss_pred CeEEEEcCchhH-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGA-ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~-~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|+++|-|.=. .+..|+.. +..|+++|+.+. ++. .| +.++..|+ +++-.. .-...|+
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~g----~~~v~DDi-----f~P~l~--iY~~a~l 73 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-EG----VNFVVDDI-----FNPNLE--IYEGADL 73 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------S----TTEE---S-----SS--HH--HHTTEEE
T ss_pred CcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-cC----cceeeecc-----cCCCHH--HhcCCcE
Confidence 699999998664 44445554 589999999986 222 23 67889999 443111 1236899
Q ss_pred EEE-cCC
Q psy7093 220 VVS-NPP 225 (322)
Q Consensus 220 Iv~-NPP 225 (322)
|.| +||
T Consensus 74 IYSiRPP 80 (127)
T PF03686_consen 74 IYSIRPP 80 (127)
T ss_dssp EEEES--
T ss_pred EEEeCCC
Confidence 998 776
|
; PDB: 2K4M_A. |
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.62 E-value=4.7 Score=36.29 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=47.2
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+++|+.++.+....+..++-....+ ...++..|+.+....+.+.... ..+
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 6788888765 24555555443 36889988877543333333222223 1346788986544333221111 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|++|.|.-..
T Consensus 85 ~iD~lVnnAG~~ 96 (271)
T PRK06505 85 KLDFVVHAIGFS 96 (271)
T ss_pred CCCEEEECCccC
Confidence 799999997653
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.54 E-value=3.3 Score=36.61 Aligned_cols=84 Identities=8% Similarity=0.161 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+...++.....+...+ .++.++.+|+.++...+.+-... ..++
T Consensus 13 k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 13 KTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5677666 6777888777654 35789999999887766665554433 35788999995544332111000 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|....
T Consensus 90 id~vi~~ag~~ 100 (259)
T PRK08213 90 VDILVNNAGAT 100 (259)
T ss_pred CCEEEECCCCC
Confidence 89999997654
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=4 Score=36.01 Aligned_cols=85 Identities=7% Similarity=0.107 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++++=.| |+|.++..+++.+ .+.+|+.++.+++.+......++..+ .++.++.+|+.++.....+.... ..++
T Consensus 12 k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 12 QVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 6777666 5666666666544 36899999999877766655555443 35888999985544322211100 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|..+..
T Consensus 89 id~vi~~ag~~~ 100 (256)
T PRK06124 89 LDILVNNVGARD 100 (256)
T ss_pred CCEEEECCCCCC
Confidence 899999987644
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=85.36 E-value=3.7 Score=35.81 Aligned_cols=86 Identities=12% Similarity=0.153 Sum_probs=52.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.++..+..+...+...+ .++.++.+|+.+......+... ...++
T Consensus 7 ~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 7 RVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 5677544 5677777766543 25789999999776665555554433 3488899998543322211100 01246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
+|.||.|+.....
T Consensus 84 ~d~vi~~ag~~~~ 96 (251)
T PRK12826 84 LDILVANAGIFPL 96 (251)
T ss_pred CCEEEECCCCCCC
Confidence 8999999866543
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=5.3 Score=34.97 Aligned_cols=87 Identities=9% Similarity=0.132 Sum_probs=54.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+....-..++.++.+|+.++.....+.... ..+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4566555 6777777777654 246899999998877666555443322335888999995543322211100 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.-+..
T Consensus 82 id~vi~~ag~~~ 93 (248)
T PRK08251 82 LDRVIVNAGIGK 93 (248)
T ss_pred CCEEEECCCcCC
Confidence 899999876543
|
|
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=85.26 E-value=0.96 Score=41.03 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=40.5
Q ss_pred CchhHHHHHHHHHHh-ccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHH
Q psy7093 119 RSETEELIDIITDKL-ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176 (322)
Q Consensus 119 rp~te~lv~~i~~~~-~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al 176 (322)
.--+..++..+.+.+ .......++|||+|||+|..++.+... ....+...|.+.+.+
T Consensus 95 wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVL 152 (282)
T ss_pred eecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-ccceeeeEecchhhe
Confidence 334555666666444 111123489999999999999988877 347899999998887
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=5.4 Score=35.73 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=53.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~f 217 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.+++.++.........+...++.++.+|+.++...+.+... ...++.
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 4556555 5556666665432 36789999998877766555444444445689999999654433221100 012578
Q ss_pred eEEEEcCCCCC
Q psy7093 218 DLVVSNPPYVP 228 (322)
Q Consensus 218 DlIv~NPPy~~ 228 (322)
|.||.|+.+..
T Consensus 83 d~vv~~ag~~~ 93 (280)
T PRK06914 83 DLLVNNAGYAN 93 (280)
T ss_pred eEEEECCcccc
Confidence 99999976544
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.16 E-value=3.2 Score=37.77 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=61.1
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccC---CCChhHH-HHHHHHHHhc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDG---GHDGLNI-IKPICVFGSN 267 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~---g~~gl~~-~~~~l~~~~~ 267 (322)
.+++++|. ++.+.. ++...+|+|+.+|||........+...-.... +.++ ...=..+ ....+....+
T Consensus 17 ~~i~~~d~-----~~~l~~-~~~~svDli~tdppy~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r 87 (302)
T COG0863 17 SKIYKGDC-----LEILKS-LPENSVDLIFTDPPYNNVKAGRKLGFLKRWLD---AWDGWDSRGIYLKFILLQWLAEQKR 87 (302)
T ss_pred hheecchH-----HHHHhh-ccccceeEEEcCCCccccccccccccccccch---hhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 46677877 444432 34558999999999987654211110000000 0000 0001122 3566778899
Q ss_pred cCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 268 YLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 268 ~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
.|+++|.+++-.+......+...+++.|+ .+....+|.
T Consensus 88 vl~~~~~~~v~~~~~~~~~~~~~~~~~gf--~~~~~iiw~ 125 (302)
T COG0863 88 VLKPGGSLYVIDPFSNLARIEDIAKKLGF--EILGKIIWK 125 (302)
T ss_pred eecCCCEEEEECCchhhhHHHHHHHhCCC--eEeeeEEEe
Confidence 99999999998887666777777777664 344444443
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.10 E-value=5.3 Score=34.94 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++++=.| |+|.++..+++.+ .+.+|++++.++...+...+++...+ ..++.++.+|+.++.....+-.. ...++|
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~-~~~~~d 78 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDS-LPALPD 78 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHH-HhhcCC
Confidence 4566555 5677777666654 25789999999877665544443322 23689999999543332221111 113579
Q ss_pred EEEEcCCCCC
Q psy7093 219 LVVSNPPYVP 228 (322)
Q Consensus 219 lIv~NPPy~~ 228 (322)
.++.|..+..
T Consensus 79 ~vv~~ag~~~ 88 (243)
T PRK07102 79 IVLIAVGTLG 88 (243)
T ss_pred EEEECCcCCC
Confidence 9999876543
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=85.07 E-value=1.9 Score=35.14 Aligned_cols=90 Identities=11% Similarity=0.191 Sum_probs=54.2
Q ss_pred EEEEcCchhHHHHHHHHhC---CCCEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 143 MIEIGSGTGAITISLLKHF---PKLKAIAIDQS--KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~---~~~~v~~vDis--~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+|=.|+ +|.++..+++.+ ....|+.+..+ .+........+...+ .++.+.+.|+.+....+.+-... ..+
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 444444 455555555543 45688899988 555555555555445 46999999985544332221111 246
Q ss_pred CeeEEEEcCCCCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKL 235 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l 235 (322)
+.|++|.|...........+
T Consensus 80 ~ld~li~~ag~~~~~~~~~~ 99 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSLDDL 99 (167)
T ss_dssp SESEEEEECSCTTSBSGGGS
T ss_pred cccccccccccccccccccc
Confidence 89999999887765544444
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.02 E-value=5.4 Score=35.95 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=53.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.++..++.+...+...+ .++.++..|+.+......+... ...++
T Consensus 7 k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 7 RGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 56665554 566666666543 36789999999877766555444333 2478889998554433221110 01256
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|..+.....
T Consensus 84 id~li~nAg~~~~~~ 98 (275)
T PRK05876 84 VDVVFSNAGIVVGGP 98 (275)
T ss_pred CCEEEECCCcCCCCC
Confidence 899999987654333
|
|
| >KOG2360|consensus | Back alignment and domain information |
|---|
Probab=84.50 E-value=2.8 Score=39.65 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|+|.||--|.-+.++|.-.+ ..+++|.|.+.+..+..+.-++..|... ++...+|+ ... +....-...
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df-----~~t-~~~~~~~~v 285 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDF-----LNT-ATPEKFRDV 285 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccc-----cCC-CCcccccce
Confidence 447999999999999999988765 6799999999999999888888888664 66678887 332 211122346
Q ss_pred eEEEEcCCCCCCC
Q psy7093 218 DLVVSNPPYVPSL 230 (322)
Q Consensus 218 DlIv~NPPy~~~~ 230 (322)
..|+++|+..-+.
T Consensus 286 ~~iL~DpscSgSg 298 (413)
T KOG2360|consen 286 TYILVDPSCSGSG 298 (413)
T ss_pred eEEEeCCCCCCCc
Confidence 6899999876544
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.48 E-value=8.5 Score=33.96 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=46.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--c
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS----KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--L 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis----~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~ 212 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+ .+..+...+.+...+ .++.++..|+.++.....+... .
T Consensus 9 k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 9 KVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred cEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5677666 5666777777654 25676666532 223333322233222 3588899999554433221110 0
Q ss_pred CCCCeeEEEEcCCCC
Q psy7093 213 LEQKFDLVVSNPPYV 227 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~ 227 (322)
..++.|++|.|.-..
T Consensus 86 ~~~~id~li~~ag~~ 100 (257)
T PRK12744 86 AFGRPDIAINTVGKV 100 (257)
T ss_pred hhCCCCEEEECCccc
Confidence 125789999987643
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.23 E-value=9.3 Score=35.61 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCeEEEEcCc-hhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKH-FPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~-~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=+|+| .|.+++.+++. .+..+|+++|.++.-++.|+.
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4688888875 34455566665 456789999999988888763
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.12 E-value=4.3 Score=35.44 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=52.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.++.........++.. ..++.++.+|+.+........... ..++
T Consensus 7 k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 7 PRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5677777777654 3579999999987665554444332 245888999995543222111000 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.-+..
T Consensus 84 id~lv~~ag~~~ 95 (241)
T PRK07454 84 PDVLINNAGMAY 95 (241)
T ss_pred CCEEEECCCccC
Confidence 899999886543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=84.08 E-value=3.9 Score=38.34 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=30.7
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||=.|+| .|..++.+|+..+..+|+++|.++...+.++
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR 218 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3678777765 4667777888864446999999998887775
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=84.06 E-value=3.9 Score=38.58 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred CeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 141 TRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+||=.|+| .|.+++.+|+.....+|+++|.++..++.+++
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 566667765 46677777887644479999999988887753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=83.82 E-value=5.5 Score=34.92 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=31.8
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||-.|+|+ |...+.+++.. +.+|++++.++...+.++
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHH
Confidence 47899999985 77777788775 489999999987766664
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.65 E-value=4 Score=35.31 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=46.0
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++=.| |+|.++..+++.+ .+.+|++++.++......+ .. .++.+...|+.+......+...+..+++|.
T Consensus 3 ~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~id~ 74 (225)
T PRK08177 3 TALIIG-ASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ----AL---PGVHIEKLDMNDPASLDQLLQRLQGQRFDL 74 (225)
T ss_pred EEEEeC-CCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH----hc---cccceEEcCCCCHHHHHHHHHHhhcCCCCE
Confidence 455444 4666666666544 2579999998876543322 11 136777889855433322222223357999
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
|+.|....
T Consensus 75 vi~~ag~~ 82 (225)
T PRK08177 75 LFVNAGIS 82 (225)
T ss_pred EEEcCccc
Confidence 99998654
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.55 E-value=2.4 Score=38.70 Aligned_cols=83 Identities=6% Similarity=0.033 Sum_probs=46.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSK--HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~--~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~ 214 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+. ...+.........+ .++.++..|+.+......+-.. -..
T Consensus 50 k~vlITG-as~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 50 RKALVTG-GDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5777777 4566666666543 367888876542 33333333333333 3477888998554322221100 013
Q ss_pred CCeeEEEEcCCC
Q psy7093 215 QKFDLVVSNPPY 226 (322)
Q Consensus 215 ~~fDlIv~NPPy 226 (322)
++.|.+|.|..+
T Consensus 127 g~id~lv~~Ag~ 138 (294)
T PRK07985 127 GGLDIMALVAGK 138 (294)
T ss_pred CCCCEEEECCCC
Confidence 578999998764
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.51 E-value=8.1 Score=34.07 Aligned_cols=82 Identities=7% Similarity=0.137 Sum_probs=50.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+...++...... ..++.++..|+.++.....+.... ..++
T Consensus 7 ~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PRK07067 7 KVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERFGG 80 (257)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4566555 6677777777654 3679999999887665443322 234888899985544332211100 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.....
T Consensus 81 id~li~~ag~~~ 92 (257)
T PRK07067 81 IDILFNNAALFD 92 (257)
T ss_pred CCEEEECCCcCC
Confidence 899999876543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.43 E-value=7.5 Score=34.82 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=48.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.+ ..++.....+...+ .++.++..|+.++.....+.... ..++
T Consensus 7 k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 7 KVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 45665554 455566655543 36899999998 44444444444333 35888899985543322211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|..+.
T Consensus 83 id~li~~Ag~~ 93 (272)
T PRK08589 83 VDVLFNNAGVD 93 (272)
T ss_pred cCEEEECCCCC
Confidence 89999998764
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=83.27 E-value=9.7 Score=34.82 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=59.4
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc--CcCCC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP--DLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~--~~~~~ 215 (322)
+.|+==||-|| .++..+++. +++++-+-.....++...+-++..+-.+++.++++|+.+..+.....+ ...-+
T Consensus 13 kvVvITGASsGIG~~lA~~la~~--G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKR--GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhC--CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 56776677666 344444444 678888888888888886666655433369999999955432221100 01357
Q ss_pred CeeEEEEcCCCCCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~ 236 (322)
..|+.|.|--+..........
T Consensus 91 ~vDvLVNNAG~~~~~~~~~~~ 111 (282)
T KOG1205|consen 91 RVDVLVNNAGISLVGFLEDTD 111 (282)
T ss_pred CCCEEEecCccccccccccCc
Confidence 899999998877644333333
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.23 E-value=6.7 Score=34.12 Aligned_cols=85 Identities=8% Similarity=0.100 Sum_probs=53.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.+++=.| |+|.++..+++.+ .+.+|++++.++...+.....+...+ .++.++..|+.+.......-... ..+.
T Consensus 8 ~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 8 KNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5788888777654 36799999998877665544444332 45888999985443222111000 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.||.|.....
T Consensus 85 id~vi~~ag~~~ 96 (239)
T PRK07666 85 IDILINNAGISK 96 (239)
T ss_pred ccEEEEcCcccc
Confidence 899999876543
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.17 E-value=6.3 Score=35.85 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=47.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKH-ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~-al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+ +|.++..++..+ .+.+|+.++.++. .++.....+...+ .++.++.+|+.+....+.+.... ..+
T Consensus 47 k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 47 KVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56777664 555566655543 2678988887642 2333333333323 35888999985543322211100 124
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|.||.|..+.
T Consensus 124 ~iD~lI~~Ag~~ 135 (290)
T PRK06701 124 RLDILVNNAAFQ 135 (290)
T ss_pred CCCEEEECCccc
Confidence 689999987653
|
|
| >KOG0821|consensus | Back alignment and domain information |
|---|
Probab=83.09 E-value=6.7 Score=34.46 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=47.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
+.+.+.+...... +.-|.++|.|.|.++.++... ..++...||+++..+.-.+.-... .+.+..++++|+
T Consensus 38 lT~KIvK~A~~~~--~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA--a~~~~~IHh~D~ 107 (326)
T KOG0821|consen 38 LTDKIVKKAGNLT--NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA--APGKLRIHHGDV 107 (326)
T ss_pred HHHHHHHhccccc--cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc--CCcceEEecccc
Confidence 3344554444322 267999999999999999876 456788899888776555543332 234688888887
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=5.3 Score=35.31 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=51.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc---CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL---LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~---~~~ 215 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+++.++....... ..++.++++|+.+........... ..+
T Consensus 2 k~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3466555 4456666665543 36799999999887666544332 235889999995544322211100 035
Q ss_pred CeeEEEEcCCCCCC
Q psy7093 216 KFDLVVSNPPYVPS 229 (322)
Q Consensus 216 ~fDlIv~NPPy~~~ 229 (322)
++|.+|.|..+...
T Consensus 77 ~id~vi~~ag~~~~ 90 (260)
T PRK08267 77 RLDVLFNNAGILRG 90 (260)
T ss_pred CCCEEEECCCCCCC
Confidence 78999999876543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=7.3 Score=34.24 Aligned_cols=84 Identities=8% Similarity=0.104 Sum_probs=52.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.+++.++.........+ .++.++..|+.+......+... ...++
T Consensus 10 k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 10 KVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 5677766 6677777776654 35789999999887766655554332 3588889998443322211100 01246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|+||.|....
T Consensus 87 ~d~li~~ag~~ 97 (258)
T PRK06949 87 IDILVNNSGVS 97 (258)
T ss_pred CCEEEECCCCC
Confidence 89999987653
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=6 Score=34.61 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=51.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC-
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ- 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~- 215 (322)
+++|=.|+++| ++.+++..+ .+.+|+.++.+++.++.+.+.+...+ .++..+..|+.++.....+.... ..+
T Consensus 6 k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 6 SIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred eEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56777776665 344444433 37899999999988877666665544 34667778885544332221110 124
Q ss_pred CeeEEEEcCCC
Q psy7093 216 KFDLVVSNPPY 226 (322)
Q Consensus 216 ~fDlIv~NPPy 226 (322)
..|++|.|.-+
T Consensus 83 ~iD~li~nag~ 93 (227)
T PRK08862 83 APDVLVNNWTS 93 (227)
T ss_pred CCCEEEECCcc
Confidence 79999999743
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=82.53 E-value=0.82 Score=40.24 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=65.3
Q ss_pred cCc-hhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcC-c-CC-CCeeE
Q psy7093 147 GSG-TGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPD-L-LE-QKFDL 219 (322)
Q Consensus 147 g~G-sG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~-~-~~-~~fDl 219 (322)
|+| ++.++..+++.+ .+++|+.++.+.+.++.+-+.+.. .+ ..++..|+.++...+.+... . .. ++.|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 344 344555444432 378999999999986555444443 33 23589998655443332110 0 12 78999
Q ss_pred EEEcCCCCCC----CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPS----LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~----~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|.|..+... ..+..+..+ .|+.... ..+--...+++.+...++++|.+++.
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~gsii~i 132 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEE--DWDKTFD-----INVFSPFLLAQAALPLMKKGGSIINI 132 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHH--HHHHHHH-----HHTHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred EEecccccccccCCCChHhCCHH--HHHHHHH-----HHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 9998765543 222222111 1111000 01111345666677788899988774
|
... |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.50 E-value=8.3 Score=33.22 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=45.7
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++=.| |+|.++..+++.+ .+.+|++++.++..++..+ ..+ ++++..|+.+......+.......++|+
T Consensus 3 ~vlvtG-~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~d~ 73 (222)
T PRK06953 3 TVLIVG-ASRGIGREFVRQYRADGWRVIATARDAAALAALQ----ALG----AEALALDVADPASVAGLAWKLDGEALDA 73 (222)
T ss_pred eEEEEc-CCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----hcc----ceEEEecCCCHHHHHHHHHHhcCCCCCE
Confidence 455344 4566666666543 3679999999876554322 122 5678899855443322211122347899
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
|+.|..+.
T Consensus 74 vi~~ag~~ 81 (222)
T PRK06953 74 AVYVAGVY 81 (222)
T ss_pred EEECCCcc
Confidence 99998765
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=82.43 E-value=2.2 Score=32.83 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=41.5
Q ss_pred CchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEE
Q psy7093 148 SGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222 (322)
Q Consensus 148 ~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~ 222 (322)
||.|.++..+++.+ .+..|+.+|.+++.++.++.. + +.++.+|..++..++.. .-.+.|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a----~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA----GIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT----TGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc----CccccCEEEE
Confidence 67777887777754 345899999999987776532 2 67899999654443332 2346787776
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=5.2 Score=35.43 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=50.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.++|=.| |+|.++..+++.+ .+.+|++++.++...+.....+...+ .++.++..|+.+......+.... ..+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566444 6666777666543 35799999999877666555554433 45888899985433222111000 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|.-..
T Consensus 79 id~vi~~ag~~ 89 (263)
T PRK06181 79 IDILVNNAGIT 89 (263)
T ss_pred CCEEEECCCcc
Confidence 89999986543
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=81.87 E-value=32 Score=31.07 Aligned_cols=116 Identities=20% Similarity=0.330 Sum_probs=59.6
Q ss_pred CCeEEEEcCchh---HHHHHHHHh-CC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 140 PTRMIEIGSGTG---AITISLLKH-FP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG---~~~~~la~~-~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
+.+|+-+|.||- +-+.++.++ +| ++-++-.|+.+- +++.-..+.+|. ... ..+
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc-----~t~----~~~ 119 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDC-----RTY----MPP 119 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-G-----GGE----EES
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccc-----ccc----CCC
Confidence 379999999974 445555554 54 456677777642 122234566776 221 246
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC--ChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHH
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH--DGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWL 291 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~--~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l 291 (322)
.+||+|||+. |.+..--..|+ ..-.++.-+...+.+.|+-||.+++-+.+ .....+-+++
T Consensus 120 ~k~DlIiSDm-----------------Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~ 182 (299)
T PF06460_consen 120 DKFDLIISDM-----------------YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELM 182 (299)
T ss_dssp S-EEEEEE---------------------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHH
T ss_pred CcccEEEEec-----------------ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHH
Confidence 7999999963 22222222222 11234666777888999999999997654 4457777777
Q ss_pred HHc
Q psy7093 292 GIC 294 (322)
Q Consensus 292 ~~~ 294 (322)
...
T Consensus 183 ~~F 185 (299)
T PF06460_consen 183 GYF 185 (299)
T ss_dssp TTE
T ss_pred hhc
Confidence 654
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=6.8 Score=36.08 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=52.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++++=.|+ +|.++.++++.+ .+.+|+.+..+.+..+.+...+....-..++.++..|+.+......+...+ ..++
T Consensus 15 k~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~ 93 (313)
T PRK05854 15 KRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRP 93 (313)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 55665554 566666666543 368999999988777666655543321235888999985543322221110 2357
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|....
T Consensus 94 iD~li~nAG~~ 104 (313)
T PRK05854 94 IHLLINNAGVM 104 (313)
T ss_pred ccEEEECCccc
Confidence 89999997653
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=81.73 E-value=13 Score=33.76 Aligned_cols=129 Identities=20% Similarity=0.147 Sum_probs=72.9
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccCCCcccccccCc--CcC-
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV-ANQLQVFHAEIDSKGQVKNLQP--DLL- 213 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l-~~~i~~~~~D~~~~~~~~~l~~--~~~- 213 (322)
+.+|=-|.++| .++..+++. +++|+.++.+++.++.+.......+. ..++..+.+|+.+....+.+.. ...
T Consensus 9 kvalVTG~s~GIG~aia~~la~~--Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 9 KVALVTGGSSGIGKAIALLLAKA--GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred cEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 45666665555 445555555 89999999999998887776665544 3468888999843322111111 011
Q ss_pred CCCeeEEEEcCCCCCCC-CCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc--CcEEEE
Q psy7093 214 EQKFDLVVSNPPYVPSL-DIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP--NGSIFL 277 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~~~-~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~--gG~l~~ 277 (322)
.++.|++|.|....... ....++.++.+.--..-+.| -+-.+...+..+|+. ||.+++
T Consensus 87 ~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G------~~~~~~~~a~~~~~~~~gg~I~~ 147 (270)
T KOG0725|consen 87 FGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRG------SAFCLKQAARPMLKKSKGGSIVN 147 (270)
T ss_pred CCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchh------HHHHHHHHHHHHHHhcCCceEEE
Confidence 47899999998765544 23334444322111111110 123444455566665 556555
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=81.45 E-value=1.1 Score=34.80 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=23.1
Q ss_pred ccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 248 LDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 248 l~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|-.|++|+ ..+++.+.+.|+|||.+++|-
T Consensus 16 Ln~GD~Gl---~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 16 LNWGDEGL---KRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHH---HHHHHHHHHHEEEEEEEEEE-
T ss_pred ecCcCHHH---HHHHHHHHHhhCCCCEEEEeC
Confidence 33455554 699999999999999999986
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.41 E-value=4.8 Score=40.02 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=55.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.++|=. .|+|.++.++++.+ .+.+|+.++.+...++.+...++..+ .++.++..|+.++.....+.... ..++
T Consensus 316 ~~~lv~-G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 316 KLVVVT-GAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CEEEEE-CCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 456544 45777777777655 36789999999887776655555444 25888999996554332221110 1357
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|.-.....
T Consensus 393 id~lv~~Ag~~~~~ 406 (582)
T PRK05855 393 PDIVVNNAGIGMAG 406 (582)
T ss_pred CcEEEECCccCCCC
Confidence 89999997654433
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.28 E-value=7 Score=33.63 Aligned_cols=137 Identities=10% Similarity=0.134 Sum_probs=78.2
Q ss_pred CCeEEEEcCchhHHHHHHHHh---CC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKH---FP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~---~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
|..|++.|+-.|.-++..|.. .+ ..+|+++|+|-..+.-+... ..+|.|+.++-++++-.+.... ..++
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~-~~~~ 142 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRR-LKNE 142 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHH-HhcC
Confidence 368999999888777766653 22 36899999987665433221 2459999999855542222111 1122
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE---------------c
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET---------------N 280 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~---------------~ 280 (322)
.--+.++ ....++ ... .-+-++....+|.-|-++++|- |
T Consensus 143 y~kIfvi------lDsdHs-~~h-------------------vLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g 196 (237)
T COG3510 143 YPKIFVI------LDSDHS-MEH-------------------VLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFG 196 (237)
T ss_pred CCcEEEE------ecCCch-HHH-------------------HHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcC
Confidence 2222222 011111 111 2245666778888888888863 3
Q ss_pred CCCHHHHHHHHHHcCCCCceeeEEEecCCCC
Q psy7093 281 HDHLDKIKEWLGICGHHMKLKLVENYKDFNN 311 (322)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g 311 (322)
.+-...+...+++++. .|+...-..+.+|
T Consensus 197 ~gP~~AVe~ylr~~p~--~yEiD~~~~~kfg 225 (237)
T COG3510 197 GGPYEAVEAYLREFPQ--DYEIDTSRENKFG 225 (237)
T ss_pred CChHHHHHHHHHhCCc--ccccchhhHhhcc
Confidence 3345778888888873 3554443444333
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.27 E-value=7.3 Score=34.26 Aligned_cols=82 Identities=11% Similarity=0.221 Sum_probs=49.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|++++.++..++.+...+...+ .++.++..|+.++.....+.... ..++
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45675665 444555555443 36789999999877666555444333 45888999985544332211100 1256
Q ss_pred eeEEEEcCC
Q psy7093 217 FDLVVSNPP 225 (322)
Q Consensus 217 fDlIv~NPP 225 (322)
.|.+|.|..
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 899999864
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=81.18 E-value=5.8 Score=34.94 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=53.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.++.....+.... ..++
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4555444 6666777666654 36789999999877766666555433 34788899985543222211100 1256
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|.+|.|..+....
T Consensus 80 id~vi~~ag~~~~~ 93 (256)
T PRK08643 80 LNVVVNNAGVAPTT 93 (256)
T ss_pred CCEEEECCCCCCCC
Confidence 89999998765433
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.12 E-value=14 Score=35.47 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHhccCccCcEEEEEE--cCCCHHHHHHHHHH
Q psy7093 254 GLNIIKPICVFGSNYLKPNGSIFLET--NHDHLDKIKEWLGI 293 (322)
Q Consensus 254 gl~~~~~~l~~~~~~Lk~gG~l~~e~--~~~~~~~~~~~l~~ 293 (322)
.|.+.+...+.....|++|-.+++|- .++.-+.+...+.+
T Consensus 103 Dls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 103 DLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 35667889999999999999999984 45555555555444
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.04 E-value=5.2 Score=35.11 Aligned_cols=87 Identities=8% Similarity=0.055 Sum_probs=55.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|+|.++..+++.+ .+.+|++++.++.........+...+ .++.++.+|+.++.....+.... ..+.
T Consensus 5 ~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 5 KVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555 5556788888888764 35789999999887766655554433 35888999985544322211100 1246
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|+||.|..+....
T Consensus 82 ~d~vi~~a~~~~~~ 95 (258)
T PRK12429 82 VDILVNNAGIQHVA 95 (258)
T ss_pred CCEEEECCCCCCCC
Confidence 89999987655443
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.98 E-value=9.4 Score=33.04 Aligned_cols=81 Identities=7% Similarity=0.086 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++|+=.|+ +|.++..+++.+ .+.+|++++.++..+.......... .++.++.+|+.++.....+.... ..++
T Consensus 6 ~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 6 KKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred cEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 57777776 465666666543 3679999999987766554433322 24788899985443222211100 1245
Q ss_pred eeEEEEcCC
Q psy7093 217 FDLVVSNPP 225 (322)
Q Consensus 217 fDlIv~NPP 225 (322)
.|.++.|..
T Consensus 82 id~ii~~ag 90 (238)
T PRK05786 82 IDGLVVTVG 90 (238)
T ss_pred CCEEEEcCC
Confidence 788888765
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.96 E-value=4.9 Score=35.69 Aligned_cols=85 Identities=8% Similarity=0.155 Sum_probs=52.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHA-CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~a-l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~~ 215 (322)
.+||=.|+ +|.++..+++.+ ++.+|+.++.+++. ++.+.+.+...+ ..+++++..|+.+.+....+.. ....+
T Consensus 9 ~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 9 QTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 56776665 667777777653 34799999988764 555544554443 2258999999955443221111 11125
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
..|++|.|..+.
T Consensus 87 ~id~li~~ag~~ 98 (253)
T PRK07904 87 DVDVAIVAFGLL 98 (253)
T ss_pred CCCEEEEeeecC
Confidence 799999887653
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.93 E-value=7.9 Score=35.28 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=63.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHH--HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHA--CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~a--l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~ 214 (322)
+++|=.| |+|.++..+++.+ .+.+|+.+..+... .+.....+...+ .++.++.+|+.+......+... -..
T Consensus 56 k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 56 RKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 5677666 5666666666654 36788877665332 222222333333 3477889998543322221110 012
Q ss_pred CCeeEEEEcCCCCC-CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 215 QKFDLVVSNPPYVP-SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 215 ~~fDlIv~NPPy~~-~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
++.|++|.|..+.. ...+..+..+. ++..... .+.-.-.+++.+...++++|.+++
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~--~~~~~~~-----N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQ--FDATFKT-----NVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHH--HHHHHHH-----HhHHHHHHHHHHHHhcCcCCEEEE
Confidence 46899999986532 12222222211 1100000 011123466667777788887766
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=6.5 Score=34.94 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=52.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.+++.++.....+...+ .++.++..|+.++.......... ..++
T Consensus 11 ~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 11 QVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5666777666543 36799999999877665555544333 45888899985443222111000 1247
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
+|.||.|.-+.
T Consensus 88 id~vi~~Ag~~ 98 (263)
T PRK07814 88 LDIVVNNVGGT 98 (263)
T ss_pred CCEEEECCCCC
Confidence 89999987653
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.84 E-value=9.9 Score=34.23 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.|+| .|.+++.+|+.....+|+++|.++..++.+++
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4677777764 45666777777644459999999988777654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.81 E-value=7.1 Score=34.79 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=45.7
Q ss_pred CeEEEEcC-chhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGS-GTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~-GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+ |++.++.++++.+ .+.+|+.++......+..++-....+ . ..++..|+.++...+.+.... ..+
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--S-DLVFPCDVASDEQIDALFASLGQHWD 83 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC--C-cceeeccCCCHHHHHHHHHHHHHHhC
Confidence 57777776 4667777766654 36788887653222222221112222 1 335778985544333221111 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
++|++|.|..+.
T Consensus 84 ~iD~lvnnAG~~ 95 (260)
T PRK06997 84 GLDGLVHSIGFA 95 (260)
T ss_pred CCcEEEEccccC
Confidence 899999998654
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.69 E-value=12 Score=32.72 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.++.....+... ...++
T Consensus 6 k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 6 KVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 5677554 5666666666543 36799999999877666555444333 3588899998554332221100 01256
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|.-+.
T Consensus 83 ~d~vi~~ag~~ 93 (258)
T PRK07890 83 VDALVNNAFRV 93 (258)
T ss_pred ccEEEECCccC
Confidence 89999987543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=80.67 E-value=18 Score=32.65 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=36.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV--ANQLQVFHAEI 199 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l--~~~i~~~~~D~ 199 (322)
..|+.+|||-=.-..-+... ++..++=+|. |+.++.-++-+...+. ..+.+++..|+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 141 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDL 141 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCc
Confidence 57999999987776655322 2355555555 3455555555555432 45688888898
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.66 E-value=6.5 Score=35.15 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred EEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCCee
Q psy7093 143 MIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQKFD 218 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~fD 218 (322)
++=.| |+|.++..+++.+ .+.+|+.++.+++.++.+...+...+ ...+.++..|+.++.....+... ...++.|
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 33344 4556666655533 36789999998887766655554433 22245567888443322211110 0124689
Q ss_pred EEEEcCCCCC
Q psy7093 219 LVVSNPPYVP 228 (322)
Q Consensus 219 lIv~NPPy~~ 228 (322)
.+|.|..+..
T Consensus 81 ~lv~~ag~~~ 90 (272)
T PRK07832 81 VVMNIAGISA 90 (272)
T ss_pred EEEECCCCCC
Confidence 9999876543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.46 E-value=11 Score=33.41 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=52.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+++ .++.++++.+ .+.+|+.++.++..++.+..+....+ .++.++..|+.+......+... ...++
T Consensus 11 k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 11 KIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5677766554 4444444432 26789999999888777666665443 3588899999554432221110 01256
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|..+..
T Consensus 88 id~li~~ag~~~ 99 (265)
T PRK07097 88 IDILVNNAGIIK 99 (265)
T ss_pred CCEEEECCCCCC
Confidence 899999987654
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.15 E-value=8.6 Score=37.99 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=48.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|=.| |+|.++..+++.+ .+.+|+.++.++..++...+.. + .++..+..|+.++.....+.... ..++
T Consensus 270 k~~lItG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 270 RVVAITG-GARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G--DEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4555444 4566666666643 3679999999887766554322 2 34667888985544332221100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-+.
T Consensus 344 id~li~nAg~~ 354 (520)
T PRK06484 344 LDVLVNNAGIA 354 (520)
T ss_pred CCEEEECCCCc
Confidence 89999997653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=6.4 Score=35.92 Aligned_cols=86 Identities=7% Similarity=0.100 Sum_probs=51.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++|| +-.|+|.++..+++.+ .+.+|+.++.+....+.+.+.+....-..++.++..|+.+......+.... ..++
T Consensus 17 k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~ 95 (306)
T PRK06197 17 RVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYPR 95 (306)
T ss_pred CEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCCC
Confidence 5666 4446677777777643 257899999887776655555443211235888999985543222211101 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|....
T Consensus 96 iD~li~nAg~~ 106 (306)
T PRK06197 96 IDLLINNAGVM 106 (306)
T ss_pred CCEEEECCccc
Confidence 89999987543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.02 E-value=7.4 Score=34.26 Aligned_cols=85 Identities=8% Similarity=0.049 Sum_probs=52.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++| +-.|+|.++..++..+ .+.+|++++.++...+.+.+.+...+ .++.++.+|+.+.......... ...++
T Consensus 8 ~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 8 KTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5566 5566677777766654 35689999999877766655554433 3578889998554332221110 01246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.||.|..+..
T Consensus 85 ~d~vi~~ag~~~ 96 (262)
T PRK13394 85 VDILVSNAGIQI 96 (262)
T ss_pred CCEEEECCccCC
Confidence 899999876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 322 | ||||
| 2b3t_A | 276 | Molecular Basis For Bacterial Class 1 Release Facto | 6e-21 | ||
| 1t43_A | 277 | Crystal Structure Analysis Of E.Coli Protein (N5)-G | 6e-21 | ||
| 4dzr_A | 215 | The Crystal Structure Of Protein-(Glutamine-N5) Met | 7e-17 | ||
| 1nv8_A | 284 | N5-Glutamine Methyltransferase, Hemk Length = 284 | 4e-15 | ||
| 1sg9_A | 282 | Crystal Structure Of Thermotoga Maritima Protein He | 9e-15 | ||
| 1vq1_A | 294 | Crystal Structure Of N5-Glutamine Methyltransferase | 5e-14 | ||
| 2pjd_A | 343 | Crystal Structure Of 16s Rrna Methyltransferase Rsm | 2e-07 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 3e-04 |
| >pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 276 | Back alignment and structure |
|
| >pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein (N5)-Glutamine Methyltransferase (Hemk) Length = 277 | Back alignment and structure |
|
| >pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5) Methyltransferase (Release Factor-Specific) From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 215 | Back alignment and structure |
|
| >pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk Length = 284 | Back alignment and structure |
|
| >pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An N5-Glutamine Methyltransferase Length = 282 | Back alignment and structure |
|
| >pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase, Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At 2.80 A Resolution Length = 294 | Back alignment and structure |
|
| >pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc Length = 343 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276 | Back alignment and structure |
|---|
Score = 211 bits (541), Expect = 1e-67
Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 30/295 (10%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ L+E ++ + ++ P + I ++ H+ + + T+LT++Q L+ L
Sbjct: 3 YQHWLREAISQLQASESPRRDAEI--LLEHVTGRGRTF--ILAFGETQLTDEQCQQLDAL 58
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
R P+ ++ F L L ++P IPR +TE L++ L P R+++
Sbjct: 59 LTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQA---LARLPEQPCRILD 115
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
+G+GTGAI ++L P + IA+D+ A L ++NA + N +
Sbjct: 116 LGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN--------------I 161
Query: 206 KNLQPDLLE----QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
LQ D Q+F ++VSNPPY+ D + ++ +E + AL G+ I I
Sbjct: 162 HILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVR-FEPLTALVAADSGMADIVHI 220
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
N L G + LE + +++ + G VE +D+ + +R
Sbjct: 221 IEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAG----YHDVETCRDYGDNERVT 271
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 4e-62
Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 29/291 (9%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ ++++ + + + I++ + K D + K+ ++ + + +L
Sbjct: 16 IWSLIR-DCSGKLEGVTETSVLEVLLIVSRVLGIRKED---LFLKDLGVSPTEEKRILEL 71
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
E R + P+ YI+ E F L+ + VF+PR ETEEL+++ + + + + +
Sbjct: 72 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVAD 129
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
IG+G+GAI +S+ F A D S A ++ +NA H V+++ V E
Sbjct: 130 IGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE---- 184
Query: 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG 265
+ ++++SNPPYV L ++ L+E +AL GG DGL+ +
Sbjct: 185 -PFKEKF--ASIEMILSNPPYVK--SSAHLPKDV-LFEPPEALFGGEDGLDFYREFF--- 235
Query: 266 SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
Y + +E D ++++K+ + KD K RF+
Sbjct: 236 GRYDTSGKIVLMEIGEDQVEELKKI---------VSDTVFLKDSAGKYRFL 277
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 8e-52
Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 35/233 (15%)
Query: 89 RLARMPVQYII-KEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIG 147
R AR+ I K L ++ P + + + L++ +EIG
Sbjct: 12 RQARILYNKAIAKA--LFGLDIEYHPKGLVTTPISRYIF------LKTFLRGGEVALEIG 63
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
+G A+ + + F K A + + + +N +N +L + I
Sbjct: 64 TGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIK------ 117
Query: 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267
++E FD++ S PPY +P + + +A+ GG G + +
Sbjct: 118 ---GVVEGTFDVIFSAPPYYD-------KPLGRVLTEREAIGGGKYGEEFSVKLLEEAFD 167
Query: 268 YLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK----DRFV 316
+L P G + L +K+ + G +KL + KD K R
Sbjct: 168 HLNPGGKVALY--LPDKEKLLNVIKERG----IKLGYSVKDIKFKVGTRWRHS 214
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 4e-50
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 16/212 (7%)
Query: 109 LKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIA 168
++ P IPR +TE L++ L+ TR+I++G+G+G I +S+ P + A
Sbjct: 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRMPS-GTRVIDVGTGSGCIAVSIALACPGVSVTA 59
Query: 169 IDQSKHACDLTEQNAVMHNVANQLQ---VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225
+D S A + +NA I+ + + + +VSNPP
Sbjct: 60 VDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER---------GRPWHAIVSNPP 110
Query: 226 YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP-NGSIFLETNHDHL 284
Y+P+ +I +LEP + YE ALDGG DGL + + L +FLE H+
Sbjct: 111 YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQA 170
Query: 285 DKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
D++ V KD DR +
Sbjct: 171 DEVARLFAPWRERG--FRVRKVKDLRGIDRVI 200
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 9e-23
Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 43/181 (23%)
Query: 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174
+ P +T L+D LE ++++G+ TG IT L K ++ D +
Sbjct: 3 WYEPGEDTYTLMDA----LEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIR 55
Query: 175 ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPK 234
A + ++ +L + ++ D+VV NPPYVP
Sbjct: 56 ALESHRGGNLVRA-------------------DLLCSINQESVDVVVFNPPYVPD----- 91
Query: 235 LEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294
D + GG+ G +I + + L + ++ L
Sbjct: 92 --------TDDPIIGGGYLGREVIDRFV----DAVTVGMLYLLVIEANRPKEVLARLEER 139
Query: 295 G 295
G
Sbjct: 140 G 140
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 1e-19
Identities = 24/167 (14%), Positives = 63/167 (37%), Gaps = 16/167 (9%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---VANQLQVFHAE 198
R+ ++G+G GA +++ K + ++S+ + ++ + + + +++V A+
Sbjct: 39 RIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEAD 98
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVP--SLDIPKLEPEIALYEDIKALDGGHDGLN 256
+ + + ++ L ++ F V+ NPPY P A +
Sbjct: 99 VTLRAK-ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFED------ 151
Query: 257 IIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLV 303
S + G + L + + +I G +++ L+
Sbjct: 152 ----WIRTASAIMVSGGQLSLISRPQSVAEIIAACGSRFGGLEITLI 194
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 1e-18
Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 50/205 (24%)
Query: 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRS---ETEELIDIITDKLESSNHTPTRMIEIGS 148
V+ I++ + L K VF T+ L++ + + ++++G
Sbjct: 11 VKIVEDILRG---KKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDD------DILDLGC 61
Query: 149 GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL 208
G G I I+L D ++ A L ++N ++N+ N +L
Sbjct: 62 GYGVIGIALADEVKST--TMADINRRAIKLAKENIKLNNLDNYDIRVVHS--------DL 111
Query: 209 QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY 268
++ ++K++ +++NPP G ++ I G
Sbjct: 112 YENVKDRKYNKIITNPPI-------------------------RAGKEVLHRIIEEGKEL 146
Query: 269 LKPNGSIFLETNHDHL--DKIKEWL 291
LK NG I++ + +++
Sbjct: 147 LKDNGEIWVVIQT-KQGAKSLAKYM 170
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-18
Identities = 25/159 (15%), Positives = 63/159 (39%), Gaps = 13/159 (8%)
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
++I++ SG G I + LL K K + ++ + D+ +++ + + +Q+++
Sbjct: 47 PIRKGKIIDLCSGNGIIPL-LLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIE 105
Query: 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256
++ K + + +++ D+V NPPY + D + H+ +
Sbjct: 106 YDL------KKITDLIPKERADIVTCNPPYFATPDTSLKNT------NEHFRIARHEVMC 153
Query: 257 IIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295
++ ++ LK G + L I + +
Sbjct: 154 TLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYR 192
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 6e-18
Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 47/219 (21%)
Query: 84 KLCECRLARMPV---QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS--NH 138
L RL + PV + E++ LT+K P VF +D+ + L S+ H
Sbjct: 141 GLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRDG-----LDVGSQLLLSTLTPH 195
Query: 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
T +++++G G G ++++ +H PK++ D S A + + + V +VF +
Sbjct: 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG--EVFASN 253
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
+ S+ ++ +FD+++SNPP+ DG L+
Sbjct: 254 VFSE----------VKGRFDMIISNPPF---------------------HDGMQTSLDAA 282
Query: 259 KPICVFGSNYLKPNGSIFLETNHDHL---DKIKEWLGIC 294
+ + +L G + + N L D + E G
Sbjct: 283 QTLIRGAVRHLNSGGELRIVANA-FLPYPDVLDETFGFH 320
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 75.5 bits (185), Expect = 5e-16
Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 16/208 (7%)
Query: 102 WNFRDLTLKMTPPVFIPRSETEEL-IDIITDKLESSN---HTPTRMIEIGSGTGAITISL 157
L++ + IP I + D + + T R I+IG+G I L
Sbjct: 24 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 83
Query: 158 LKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217
+A + + ++N +N+++ ++V + K + + + E +
Sbjct: 84 GATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK--VPQKTLLMDALKEESEIIY 141
Query: 218 DLVVSNPPYVPSLD---------IPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY 268
D + NPP+ + + P I + L +K I
Sbjct: 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQL 201
Query: 269 LKPNGSIFLETNH-DHLDKIKEWLGICG 295
K L +KE L I G
Sbjct: 202 KKRLRWYSCMLGKKCSLAPLKEELRIQG 229
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 1e-15
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 41/219 (18%)
Query: 84 KLCECRLARMPVQYIIKEWNFR----DLTLKMTPPVFIPRSETEELIDIITDKLESSNHT 139
+L C + + +++ D T+ VF R+ + L +
Sbjct: 166 RLINCTFNEPQLADAPQTVSWKLEGTDWTIHNHANVF-SRTGLDIGARFFMQHLP--ENL 222
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV-FHAE 198
++++G G G I ++LL P+ K + +D+S A + N + + F
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN 282
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
N + +F+ V+ NPP+ N+
Sbjct: 283 --------NALSGVEPFRFNAVLCNPPFH---------------------QQHALTDNVA 313
Query: 259 KPICVFGSNYLKPNGSIFLETNHDHLD---KIKEWLGIC 294
+ LK NG +++ N HLD K+K+ G C
Sbjct: 314 WEMFHHARRCLKINGELYIVANR-HLDYFHKLKKIFGNC 351
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 1e-12
Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 44/220 (20%)
Query: 85 LCECRLARMPVQYIIKEWNFR----DLTLKMTPPVFIPRSE---TEELIDIITDKLESSN 137
L E P+ + + ++ R + T P VF + L++ + ++L
Sbjct: 172 LLEKEKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEG 231
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197
+++++G+G GA+T+ L + ++ ++ + ++ + + Q H+
Sbjct: 232 VRGRQVLDLGAGYGALTLPLARMGAEVV--GVEDDLASVLSLQKGLEANALKA--QALHS 287
Query: 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257
++D L + +FD++V+NPP+ GG L++
Sbjct: 288 DVDE-----ALTEE---ARFDIIVTNPPFH---------------------VGGAVILDV 318
Query: 258 IKPICVFGSNYLKPNGSIFLETNHDHL---DKIKEWLGIC 294
+ + L+P G FL +N L ++E G
Sbjct: 319 AQAFVNVAAARLRPGGVFFLVSNP-FLKYEPLLEEKFGAF 357
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 9e-09
Identities = 72/374 (19%), Positives = 116/374 (31%), Gaps = 108/374 (28%)
Query: 2 LALKNC---VVLVLSLQKRALATKANVVDNVLKEWTAKFEQAK-IPEPENSIQNIMAHIF 57
L LKNC ++ LQ ++ + WT++ + + I +SIQ + +
Sbjct: 187 LNLKNCNSPETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 58 NTTK-------IDDVTIVEKNTELTNDQITHLNKL-CECRL---AR-MPVQYIIKEWNFR 105
+ + +V +N + N C++ R V +
Sbjct: 239 KSKPYENCLLVLLNV----QNAK-------AWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 106 DLTLKMTPPVFIPRSETEEL----IDIITDKL--ESSNHTPTRMIEIGSGT--GAITISL 157
++L P E + L +D L E P R+ I G T
Sbjct: 288 HISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 158 LKH--FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF--HAEIDSK------GQVKN 207
KH KL I I+ S + + E + +L VF A I + V
Sbjct: 347 WKHVNCDKLTTI-IESSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 208 LQPDLLEQKFD---LVVSNPP----YVPSLDI---PKLEPEIAL-------YEDIKALDG 250
++ K LV P +PS+ + KLE E AL Y K D
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 251 GHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMK-LKLVENYKDF 309
+ Y + H+ GHH+K ++ E F
Sbjct: 462 DDLIPPYL-------DQYF-----------YSHI----------GHHLKNIEHPERMTLF 493
Query: 310 NNK---DRFVELKL 320
RF+E K+
Sbjct: 494 RMVFLDFRFLEQKI 507
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++++G G+G +T+ + K AID A ++T+QN N+ N Q+ +
Sbjct: 38 VVVDVGCGSGGMTVEIAKRCK--FVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGR--A 92
Query: 202 KGQVKNLQPD 211
+ + L+ +
Sbjct: 93 EDVLDKLEFN 102
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 6e-08
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++G GTG +T+ L + AID++ A TE N H + + + + +
Sbjct: 36 VAVDVGCGTGGVTLELAGRVRR--VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA-- 91
Query: 202 KGQVKNLQPDLLEQ--KFDLVV 221
P+ L + D+ V
Sbjct: 92 --------PEALCKIPDIDIAV 105
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 7e-07
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++ + TG I + I ID+S A + ++NA ++ V ++++ +
Sbjct: 220 RVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG--SA 276
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+++ LQ +KFD+VV +PP A + K L G +
Sbjct: 277 FEEMEKLQKK--GEKFDIVVLDPP--------------AFVQHEKDLKAGLRAY---FNV 317
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294
G N +K G + + H+D + + +
Sbjct: 318 NFAGLNLVKDGGILVTCSCSQHVDL-QMFKDMI 349
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE- 180
L + I+ + ++ + ++EIG GTG +T+ LL K+ I ID +
Sbjct: 25 LKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDS-----RMISE 79
Query: 181 -QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ ++ N L+V+ + ++ KFD+ +N PY
Sbjct: 80 VKKRCLYEGYNNLEVYEGDA--------IKTVF--PKFDVCTANIPY 116
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-06
Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 50/186 (26%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
++ + + S + ++++G+GTG ++ L++ +P+ +D S+
Sbjct: 29 DDFYGVSVS-IASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE--------- 78
Query: 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDL----LEQKFDLVVSN--PPYVPSLDIPKLE 236
L++ +VK ++ D E+K+D+VVS ++ D +L
Sbjct: 79 -------KMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELY 131
Query: 237 PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS-IFLETNHDHLDKIKEWLGICG 295
+ LK +G I + H I+
Sbjct: 132 KRSY--------------------------SILKESGIFINADLVHGETAFIENLNKTIW 165
Query: 296 HHMKLK 301
Sbjct: 166 RQYVEN 171
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
L + II ++ + PT ++E+G GTG +T+ LL+ K+ A +D + +L ++
Sbjct: 11 LKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP-RLVAELHKR 69
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
VA++LQV ++ L+ DL FD V+N PY
Sbjct: 70 VQ-GTPVASKLQVLVGDV--------LKTDL--PFFDTCVANLPY 103
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 2e-06
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 37/152 (24%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
R++++GS + I LL+ AIA + +N H + +++ V A
Sbjct: 22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA-- 79
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259
+ L ++I + G +I
Sbjct: 80 -----------NGLS-----------------------AFEEADNIDTITICGMGGRLIA 105
Query: 260 PICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291
I + L+ ++ L+ N+ D +++WL
Sbjct: 106 DILNNDIDKLQHVKTLVLQPNN-REDDLRKWL 136
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 4e-06
Identities = 22/169 (13%), Positives = 47/169 (27%), Gaps = 18/169 (10%)
Query: 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAI---DQS 172
+ L I L + + +G+G + ++ F + I D
Sbjct: 298 PTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIE 357
Query: 173 KHACDLTEQN-----AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227
+L + + N + ++ S +VV NPPYV
Sbjct: 358 TLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-------NPEDFANVSVVVMNPPYV 410
Query: 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF---GSNYLKPNG 273
+ P ++ + A + I +F + ++
Sbjct: 411 SGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGT 459
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-06
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+ +IG G+G+I I L+ P+ A+ + S+ + NA+ V++
Sbjct: 28 TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD-RIAVQQGA 84
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 5e-06
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISL-LKHFPKLKAIAIDQSKHACDLTE 180
T E L+ + + G + ++L P ++ + ID A D
Sbjct: 101 TRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGAT 160
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDLVVSN 223
+ A H +A Q+ + + L + +DL+ SN
Sbjct: 161 RLAAGHALAGQITLHRQDAW----------KLDTREGYDLLTSN 194
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-06
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 37/151 (24%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
R+ +IGS + +K+ AIA + ++ + Q+ V
Sbjct: 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGN-- 80
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260
L + D +V A GG +I+
Sbjct: 81 ------GLAVIEKKDAIDTIVI------------------------AGMGGT----LIRT 106
Query: 261 ICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291
I G+ L + L+ N +++EW
Sbjct: 107 ILEEGAAKLAGVTKLILQPNI-AAWQLREWS 136
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-06
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
+ T I+IGSG GA++I+L K A+D SKH ++ +N N+ +++
Sbjct: 37 INRFGITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRI 95
Query: 193 QVFHAEIDSKGQVKNLQ-PDLLEQKFDLVVSN 223
Q+ ++ N+ D DL+VS
Sbjct: 96 QIVQGDVH------NIPIED---NYADLIVSR 118
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-06
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
++++GS + I L++ AIA + + +N H + ++QV A
Sbjct: 16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG 75
Query: 200 DSKGQVKNLQPDLLEQKFDLVVS 222
L + ++
Sbjct: 76 --------LAAFEETDQVSVITI 90
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++E G G GA T+ L K+ P + +ID S + + +N + + N ++ A I
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANI-- 96
Query: 202 KGQVKNLQPDLLEQKFDLVVSN 223
+ FD +
Sbjct: 97 ------FSLPFEDSSFDHIFVC 112
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 23/90 (25%)
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ----LQ 193
++G G G T L + ID M A
Sbjct: 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD----------DDMLEKAADRLPNTN 81
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
A++ +P QK DL+ +N
Sbjct: 82 FGKADLA------TWKPA---QKADLLYAN 102
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
+E+ + KL + M +IG+G+ +++I P + A++++ N
Sbjct: 26 QEVRAVTLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83
Query: 183 AVMHNVANQLQVFHAEI 199
N + + A
Sbjct: 84 LKKFVARN-VTLVEAFA 99
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+ +IG G+G++++ +AI I+ + ++N + ++ +++
Sbjct: 58 LLWDIGGGSGSVSVEWC--LAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT 112
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 21/145 (14%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++ S TG +S L + +++D S+ A D+ QN ++ + F + D
Sbjct: 223 RVLNCFSYTGGFAVSALMGGCS-QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD-DV 280
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
++ + +KFD++V +PP E+ L G G K I
Sbjct: 281 FKLLRTYRDR--GEKFDVIVMDPP--------------KFVENKSQLMGACRGY---KDI 321
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDK 286
+ L G + + +
Sbjct: 322 NMLAIQLLNEGGILLTFSCSGLMTS 346
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+++ G G TI + IAID L NA ++ +A++++
Sbjct: 79 CDVVVDAFCGVGGNTIQFALTGMR--VIAIDIDPVKIALARNNAEVYGIADKIEFIC--- 133
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPY 226
G L L K D+V +PP+
Sbjct: 134 ---GDFLLLASFL---KADVVFLSPPW 154
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+ + +IG GTG T+ L H + +D D+ +NA + N++ +
Sbjct: 47 KSLIADIGCGTGGQTMVLAGHVTG-QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSN 223
++ DL+ S
Sbjct: 106 --------DDLPFRNEELDLIWSE 121
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
LID + +ES+N T ++EIG G G +T L K+ K+ I ID+ L
Sbjct: 33 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDK-----SLEPY 87
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ + N +++ + L+ DL + F+ VV+N PY
Sbjct: 88 ANKLKELYNNIEIIWGDA--------LKVDLNKLDFNKVVANLPY 124
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 129 ITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS----KHACDLTEQNAV 184
+ L+ SN R+I++G G G + LLK + +D S + A + ++ +
Sbjct: 21 VVAALKQSN--ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRL 78
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP--YVPSLDIPKLEPEIA 240
N +LQ+ + D +D ++ + E +
Sbjct: 79 PRNQWERLQLIQGALT--------YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLF 128
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 12/68 (17%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186
+I + + P ++++I + G I++ +H P + +D + ++ ++NA +
Sbjct: 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ 211
Query: 187 NVANQLQV 194
VA++
Sbjct: 212 GVASRYHT 219
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-05
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
L ++ ++ N T + EIG+G G +T L K ++ +I +D L
Sbjct: 12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDS-----HLFNL 66
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
++ + ++ + H +I LQ ++ +V N PY
Sbjct: 67 SSEKLKLNTRVTLIHQDI--------LQFQFPNKQRYKIVGNIPY 103
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 33/175 (18%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
++ G G T L K+ A D + A T Q + N ++ ++
Sbjct: 27 VDATMGNGNDTAFLAGLSKKV--YAFDVQEQALGKTSQRLSDLGIEN-TELILDGHENL- 82
Query: 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED-IKALDGGHDGLNIIKPIC 262
+ + + N Y+PS D + I ++A++ D
Sbjct: 83 ------DHYVREPIRAAIFNLGYLPSAD----KSVITKPHTTLEAIEKILD--------- 123
Query: 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLK----LVENYKDFNNKD 313
L+ G + + + H E + + + L Y+ N +
Sbjct: 124 -----RLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQIN 173
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 5e-05
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
TEE + L TR++++GSG+G + + + + ID S ++
Sbjct: 21 TEEKYATLGRVLRMK--PGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKR 77
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222
A V+ ++ H + + +K D+
Sbjct: 78 RAEELGVSERVHFIHND------AAGYVAN---EKCDVAAC 109
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 149 GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL 208
G+G I I L + I I++ + E NA+ V ++++ + L
Sbjct: 227 GSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD------ATQL 280
Query: 209 QPDLLEQKFDLVVSNPPY 226
D +SN PY
Sbjct: 281 SQY--VDSVDFAISNLPY 296
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 7e-05
Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 25/155 (16%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQ 181
E++D + E+ R++E G + + + + ++ A DL
Sbjct: 25 PEVVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW 82
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL 241
+ + + FDL++ NPPY + K +
Sbjct: 83 AEGIL-------------------ADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFK 123
Query: 242 YEDI---KALDGGHDGLNIIKPICVFGSNYLKPNG 273
KA N+ LKP G
Sbjct: 124 AVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG 158
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178
T + + I + + ++ +IG GTG T+ L + + ID ++
Sbjct: 31 PEATRKAVSFINELTD-----DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEI 84
Query: 179 TEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
+NAV N A++++ + ++ DL+ S
Sbjct: 85 FNENAVKANCADRVKGITGSM--------DNLPFQNEELDLIWSE 121
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 28/145 (19%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++ S G + + A+A+D+ A + +Q A + L+V ++
Sbjct: 217 RVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAA----LRLGLRVDIRHGEA 270
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
++ LE F V+ +PP L + + L L +
Sbjct: 271 LPTLRG-----LEGPFHHVLLDPP--------------TLVKRPEELPAMKRHL---VDL 308
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDK 286
L G ++L + HL
Sbjct: 309 VREALRLLAEEGFLWLSSCSYHLRL 333
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 16/105 (15%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
+ I + + + EIGSG G T+ L++ + AI ID L +
Sbjct: 13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDH-----KLCKT 67
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ QV + +I LQ + + + N PY
Sbjct: 68 TENKLVDHDNFQVLNKDI--------LQFKFPKNQSYKIFGNIPY 104
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 27/160 (16%)
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
H +R ++ G+G G IT +LL ++ KH + ++ V
Sbjct: 91 GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGK---FIL 146
Query: 197 AEIDSKGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDG 254
A +++ L +DL+V Y+ D K +AL
Sbjct: 147 ASMET--------ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ-----QALTPNGY- 192
Query: 255 LNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294
F N + + + + + +
Sbjct: 193 -------IFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF 225
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R +++ S G + L F + +A+D S A E+NA ++ + N ++
Sbjct: 212 RALDVFSYAGGFALHLALGFRE--VVAVDSSAEALRRAEENARLNGLGN--VRVLEA-NA 266
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
++ L+ + ++FDLVV +PP A + K ++ + K +
Sbjct: 267 FDLLRRLEKE--GERFDLVVLDPP--------------AFAKGKKDVERAYRAY---KEV 307
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDK 286
+ LK G + + H+ +
Sbjct: 308 NLRAIKLLKEGGILATASCSHHMTE 332
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 43/166 (25%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+ +EIG GA T L H +L ID A Q + + +I
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPHCKRL--TVIDVMPRAIGRACQRT---KRWSHISWAATDI 106
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNP--PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257
+ FDL+V Y+ + + I +
Sbjct: 107 LQ---------FSTAELFDLIVVAEVLYYLEDMT--------QMRTAIDNM--------- 140
Query: 258 IKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLV 303
L P G + + D + W + G + ++
Sbjct: 141 --------VKMLAPGGHLVFGSARDATC--RRWGHVAGAETVITIL 176
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 7/56 (12%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195
P R+++IG TG +++ +++ +D ++ + + + ++
Sbjct: 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLP-QQLEMMRKQTAGLSGSERIHGH 234
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} Length = 255 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 125 LID--IITDKLESSNHTP-TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
L D ++ + + + ++EIG G GA+T LL L + ID+
Sbjct: 12 LHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDR 61
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 6e-04
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+I+ G G T L + FP + I +D SK A ++ + N++ +L +
Sbjct: 59 PLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQA 116
Query: 202 KGQVKNLQPDLLEQKFDLVV 221
+ + D +
Sbjct: 117 --------AQIHSEIGDANI 128
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 133 LESSNHTPTRMIEIGSGTG--AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
L +++++G+G+G AI L KA+ +D E NA + V
Sbjct: 114 LARHLRPGDKVLDLGTGSGVLAIAAEKLGG----KALGVDIDPMVLPQAEANAKRNGVRP 169
Query: 191 QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
+ +L+ L FDL+V+N
Sbjct: 170 RFLEG-----------SLEAALPFGPFDLLVAN 191
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 7e-04
Identities = 11/119 (9%), Positives = 35/119 (29%), Gaps = 13/119 (10%)
Query: 123 EELIDIITDKL----ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178
+ + I DKL + +++++ G G + + + +++
Sbjct: 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF 97
Query: 179 TEQNA------VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD--LVVSNPPYVPS 229
++ + + + ++ + + D L V+N S
Sbjct: 98 LNAKFEGSPLQILKRDPYDWSTYS-NLIDEERIFVPEVQSSDHINDKFLTVANVTGEGS 155
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 45/174 (25%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
++ D I +K +N +++ GTG +T +L F A+D S+
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQE-------- 70
Query: 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDL----LEQKFDLVVSNPPYVPSLDIPKLEPE 238
M + A + + D+ + +KFDL+
Sbjct: 71 --MLSEAEN----KFR-SQGLKPRLACQDISNLNINRKFDLITC---------------- 107
Query: 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292
+ + D K + SN+LK G + N K+ + LG
Sbjct: 108 --CLDSTNYIIDSDDLKKYFKAV----SNHLKEGGVFIFDIN--SYYKLSQVLG 153
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 7e-04
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 149 GTGAITI-SLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
G+G I + + P A D + L + A+ ++ ++ ++
Sbjct: 213 GSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSW-IRFLR------ADARH 265
Query: 208 LQPDLLEQKFDLVVSNPPY 226
L + D +++NPP+
Sbjct: 266 LPRF--FPEVDRILANPPH 282
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 8e-04
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 19/133 (14%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+ ++G+GTG ++ L K + I ++ K A D+ +N E
Sbjct: 52 VVADLGAGTGVLSYGALLLGAK-EVICVEVDKEAVDVLIENL-------------GEFKG 97
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
K +V + D+V+ NPP+ + + + +++ KP
Sbjct: 98 KFKVFIGDVSEFNSRVDIVIMNPPF----GSQRKHADRPFLLKAFEISDVVYSIHLAKPE 153
Query: 262 CV-FGSNYLKPNG 273
F + +G
Sbjct: 154 VRRFIEKFSWEHG 166
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194
+I++ G G +L+ P+L D D + H++ +++
Sbjct: 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP-TTRDAARKTIHAHDLGGRVEF 233
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 100.0 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 100.0 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.97 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.93 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.91 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.87 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.86 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.85 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.84 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.83 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.82 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.82 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.82 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.81 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.8 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.8 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.79 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.79 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.79 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.79 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.78 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.78 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.78 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.78 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.77 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.77 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.76 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.76 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.76 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.75 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.75 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.74 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.74 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.74 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.74 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.73 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.72 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.72 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.72 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.71 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.71 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.71 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.71 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.7 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.7 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.69 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.69 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.69 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.67 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.67 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.67 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.67 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.67 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.67 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.66 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.66 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.66 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.66 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.66 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.66 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.65 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.64 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.63 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.63 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.63 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.63 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.63 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.63 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.63 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.63 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.62 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.62 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.62 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.61 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.61 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.61 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.61 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.6 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.6 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.6 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.6 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.6 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.6 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.59 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.59 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.59 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.59 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.59 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.59 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.58 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.58 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.58 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.58 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.57 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.57 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.57 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.57 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.57 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.56 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.56 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.56 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.56 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.56 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.56 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.56 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.56 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.56 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.56 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.55 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.55 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.55 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.55 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.55 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.55 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.55 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.55 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.55 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.54 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.54 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.54 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.54 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.54 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.54 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.54 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.54 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.54 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.54 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.54 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.54 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.53 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.53 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.53 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.53 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.53 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.53 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.53 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.52 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.52 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.52 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.52 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.52 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.52 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.51 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.51 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.51 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.51 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.5 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.5 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.5 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.5 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.5 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.5 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.49 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.49 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.49 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.49 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.49 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.49 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.49 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.48 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.48 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.48 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.48 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.48 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.48 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.48 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.48 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.48 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.47 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.47 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.47 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.47 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.47 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.47 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.47 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.47 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.47 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.47 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.46 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.46 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.46 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.46 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.46 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.46 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.45 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.45 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.45 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.45 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.45 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.45 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.45 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.45 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.45 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.45 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.45 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.45 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.45 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.44 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.44 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.44 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.44 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.43 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.43 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.43 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.43 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.42 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.42 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.41 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.4 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.4 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.4 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.4 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.4 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.4 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.38 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.38 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.38 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.38 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.37 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.36 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.35 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.35 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.35 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.34 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.33 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.32 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.32 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.31 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.29 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.29 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.29 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.28 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.28 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.27 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.27 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.26 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.25 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.23 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.23 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.22 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.21 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.2 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.17 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.17 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.16 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.12 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.11 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.11 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.1 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.09 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.09 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.08 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.08 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.07 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.04 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.04 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.02 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.01 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.0 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.98 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.95 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.95 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.93 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.92 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.88 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.87 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.74 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.73 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.71 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.69 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.6 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.54 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.52 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.49 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.49 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.39 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.24 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.16 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.07 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.07 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 98.03 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.9 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.87 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.84 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.78 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.77 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.69 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.58 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.56 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.55 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.52 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.5 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.45 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.44 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.44 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.4 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.34 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.16 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 97.13 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 97.04 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.85 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.65 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.56 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.03 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.83 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.57 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.42 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.19 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.08 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.97 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 94.87 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.8 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.64 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 94.55 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.53 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.43 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.17 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.09 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 93.64 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 93.61 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.59 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.59 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 93.55 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 93.51 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 93.49 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.43 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 93.4 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.36 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.16 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 93.02 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 92.99 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.9 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 92.78 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.66 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.53 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 92.49 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.46 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 92.46 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.45 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 92.43 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 92.33 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.26 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 92.25 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 92.14 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.12 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.11 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.11 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.06 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.05 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 91.96 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.87 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 91.85 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 91.85 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.75 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 91.68 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 91.62 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 91.62 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.62 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 91.61 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.59 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 91.56 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 91.48 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 91.45 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 91.45 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 91.44 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 91.44 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 91.41 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.38 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.37 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 91.34 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 91.32 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 91.27 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.26 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.14 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 91.14 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 91.11 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 91.05 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 91.05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 90.87 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 90.86 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.85 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 90.76 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.74 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 90.53 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 90.5 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 90.5 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 90.49 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 90.48 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 90.46 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 90.43 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 90.42 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 90.4 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 90.35 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.32 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.26 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 90.25 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 90.14 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 90.02 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 90.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 90.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 89.93 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 89.92 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 89.9 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 89.89 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 89.82 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.78 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 89.74 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 89.73 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 89.68 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 89.67 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 89.64 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 89.62 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 89.59 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 89.55 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.49 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 89.48 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 89.37 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 89.21 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.21 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 89.2 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 89.17 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 89.13 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.08 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 88.97 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 88.82 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 88.81 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 88.67 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 88.66 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.66 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 88.64 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 88.62 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 88.59 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 88.39 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 88.36 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 88.31 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 88.23 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 87.72 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 87.71 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.71 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 87.62 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 87.38 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 87.33 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 87.26 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 87.15 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 86.98 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 86.8 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 86.74 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 86.47 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 86.47 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 86.46 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 86.46 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 86.38 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 86.31 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 86.17 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 86.14 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 86.08 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 86.05 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 86.03 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 85.93 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 85.89 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.56 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 85.49 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 85.44 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 85.43 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 85.36 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 85.36 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 85.27 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 85.2 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 85.09 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 85.04 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 84.95 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 84.93 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 84.9 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 84.83 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 84.69 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 84.46 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 84.32 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 84.09 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 83.96 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 83.95 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 83.79 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 83.64 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 83.42 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 83.39 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 83.3 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 83.27 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 83.16 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 83.08 |
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=345.25 Aligned_cols=275 Identities=25% Similarity=0.421 Sum_probs=252.1
Q ss_pred ccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEeccee
Q psy7093 24 NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWN 103 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~ 103 (322)
||++++++++.+.| +++++|+.+|++|++++++.++..++ .+...++++++.++++.++.+|.+++|++|++|.++
T Consensus 1 ~~~~~~~~~~~~~l--~~~~~~~~~a~~ll~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~ 76 (276)
T 2b3t_A 1 MEYQHWLREAISQL--QASESPRRDAEILLEHVTGRGRTFIL--AFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVRE 76 (276)
T ss_dssp CBHHHHHHHHHHTT--TTSSCHHHHHHHHHHHHHTCCHHHHH--HTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCEEE
T ss_pred CcHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHhCCCHHHHH--hccCCCCCHHHHHHHHHHHHHHHcCCChhHeeeeeE
Confidence 78899999999888 68889999999999999999877666 577888999999999999999999999999999999
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
||+..|.+++++++|||+|+.+++.+++.+. . ++.+|||+|||+|++++.++..+|..+|+|+|+|+.+++.|++|+
T Consensus 77 f~~~~~~~~~~~~ipr~~te~l~~~~l~~~~-~--~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~ 153 (276)
T 2b3t_A 77 FWSLPLFVSPATLIPRPDTECLVEQALARLP-E--QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA 153 (276)
T ss_dssp ETTEEEECCTTSCCCCTTHHHHHHHHHHHSC-S--SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHH
T ss_pred ECCceEEeCCCCcccCchHHHHHHHHHHhcc-c--CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 9999999999999999999999999998875 2 237999999999999999999989999999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++. +++++++|+ .+.+ ..++||+|++||||+...+ ..+.+++..|+|..||++|.+|++.++.+++
T Consensus 154 ~~~~~~-~v~~~~~d~-----~~~~----~~~~fD~Iv~npPy~~~~~-~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~ 222 (276)
T 2b3t_A 154 QHLAIK-NIHILQSDW-----FSAL----AGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGMADIVHIIE 222 (276)
T ss_dssp HHHTCC-SEEEECCST-----TGGG----TTCCEEEEEECCCCBCTTC-HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHH
T ss_pred HHcCCC-ceEEEEcch-----hhhc----ccCCccEEEECCCCCCccc-cccChhhhhcCcHHHHcCCCcHHHHHHHHHH
Confidence 998876 599999999 5433 2468999999999998877 6677788999999999999999999999999
Q ss_pred HHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.+.++|+|||+++++++..+.+.+.+++++.| |..+++++|++|.+|++.+++
T Consensus 223 ~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~G----f~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 223 QSRNALVSGGFLLLEHGWQQGEAVRQAFILAG----YHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp HHGGGEEEEEEEEEECCSSCHHHHHHHHHHTT----CTTCCEEECTTSSEEEEEEEC
T ss_pred HHHHhcCCCCEEEEEECchHHHHHHHHHHHCC----CcEEEEEecCCCCCcEEEEEE
Confidence 99999999999999999999999999999886 678899999999999999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=343.24 Aligned_cols=263 Identities=26% Similarity=0.448 Sum_probs=232.6
Q ss_pred ccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCccccccccc--CCCCCHHHHHHHHHHHHHHHcCCCceeEecc
Q psy7093 24 NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEK--NTELTNDQITHLNKLCECRLARMPVQYIIKE 101 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~ 101 (322)
||++++++++.+.|.++ +++++.+|++|++|+++.++..++ .+. +.+++. +++++++.||.+++|++|++|.
T Consensus 14 ~~~~~~~~~~~~~l~~~-~~~~~~~a~~ll~~~~~~~~~~l~--~~~~~~~~~~~---~~~~~~~~~r~~~~p~~yi~g~ 87 (284)
T 1nv8_A 14 RKIWSLIRDCSGKLEGV-TETSVLEVLLIVSRVLGIRKEDLF--LKDLGVSPTEE---KRILELVEKRASGYPLHYILGE 87 (284)
T ss_dssp CCHHHHHHHHHHHTTTT-CSCHHHHHHHHHHHHHTCCGGGGC--CSSCCCCHHHH---HHHHHHHHHHHTTCCHHHHHTE
T ss_pred chHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHcCCCHHHHH--hccccccccCH---HHHHHHHHHHHCCCCCeEEeee
Confidence 88999999999999887 888999999999999999887765 344 444444 7899999999999999999999
Q ss_pred eeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 102 WNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 102 ~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++||+..|.+++++|+|||+|+.+++.+++.+.... +.+|||+|||+|++++.+++. |+.+|+|+|+|+.+++.|++
T Consensus 88 ~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~~~~~--~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~ 164 (284)
T 1nv8_A 88 KEFMGLSFLVEEGVFVPRPETEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARK 164 (284)
T ss_dssp EEETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHH
T ss_pred eEECCeEEEeCCCceecChhHHHHHHHHHHHhcccC--CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 999999999999999999999999999998875332 268999999999999999999 99999999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe---eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF---DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f---DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~ 258 (322)
|+..+++.++++++++|+ ++.++ ++| |+|++||||+...+ .+.++++ |||..||++|.+|+++|
T Consensus 165 n~~~~~l~~~v~~~~~D~-----~~~~~-----~~f~~~D~IvsnPPyi~~~~--~l~~~v~-~ep~~al~~~~dgl~~~ 231 (284)
T 1nv8_A 165 NAERHGVSDRFFVRKGEF-----LEPFK-----EKFASIEMILSNPPYVKSSA--HLPKDVL-FEPPEALFGGEDGLDFY 231 (284)
T ss_dssp HHHHTTCTTSEEEEESST-----TGGGG-----GGTTTCCEEEECCCCBCGGG--SCTTSCC-CSCHHHHBCTTTSCHHH
T ss_pred HHHHcCCCCceEEEECcc-----hhhcc-----cccCCCCEEEEcCCCCCccc--ccChhhc-cCcHHHhcCCCcHHHHH
Confidence 999999988899999999 54332 367 99999999999887 7888998 99999999999999776
Q ss_pred HHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 259 KPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 259 ~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+.++. +.|+|||++++|+++.|.+.+.+++... ++++|++|++|++.+.+
T Consensus 232 ~~i~~---~~l~pgG~l~~e~~~~q~~~v~~~~~~~---------~~~~D~~g~~R~~~~~~ 281 (284)
T 1nv8_A 232 REFFG---RYDTSGKIVLMEIGEDQVEELKKIVSDT---------VFLKDSAGKYRFLLLNR 281 (284)
T ss_dssp HHHHH---HCCCTTCEEEEECCTTCHHHHTTTSTTC---------EEEECTTSSEEEEEEEC
T ss_pred HHHHH---hcCCCCCEEEEEECchHHHHHHHHHHhC---------CeecccCCCceEEEEEE
Confidence 66541 6778999999999999999888877542 78999999999998765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-32 Score=233.35 Aligned_cols=201 Identities=28% Similarity=0.455 Sum_probs=138.0
Q ss_pred EEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy7093 109 LKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV 188 (322)
Q Consensus 109 ~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l 188 (322)
|.+++++|+|||+++.+++.+++.+.... ++.+|||+|||+|.++..+++..++.+++|+|+|+.+++.|++|+..++.
T Consensus 1 f~~~~~~~~p~~~~~~~~~~~~~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~ 79 (215)
T 4dzr_A 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRMP-SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA 79 (215)
T ss_dssp CBCSGGGGSCCHHHHHHHHHHHHHHTTCC-TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------
T ss_pred CcCCCCccCCCccHHHHHHHHHHHhhhcC-CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999886511 34799999999999999999998888999999999999999999988876
Q ss_pred CCcEEEEEccCCCcccccccCc-CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc
Q psy7093 189 ANQLQVFHAEIDSKGQVKNLQP-DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267 (322)
Q Consensus 189 ~~~i~~~~~D~~~~~~~~~l~~-~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~ 267 (322)
+++++++|+ .+.++. ....++||+|++||||+.......+.++++.|+|..++.+|.+|+++|..+++.+.+
T Consensus 80 --~~~~~~~d~-----~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (215)
T 4dzr_A 80 --VVDWAAADG-----IEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPY 152 (215)
T ss_dssp -----CCHHHH-----HHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGG
T ss_pred --ceEEEEcch-----HhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHH
Confidence 589999998 443210 001378999999999999999999999999999999999999999999999999999
Q ss_pred cCccCcE-EEEEEcCCCHHHHHHHHH--HcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 268 YLKPNGS-IFLETNHDHLDKIKEWLG--ICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 268 ~Lk~gG~-l~~e~~~~~~~~~~~~l~--~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
+|+|||+ ++++++..+.+.+.+++. +.+ |..+++++|..|..|++.+++.
T Consensus 153 ~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~g----f~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 153 VLARGRAGVFLEVGHNQADEVARLFAPWRER----GFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp GBCSSSEEEEEECTTSCHHHHHHHTGGGGGG----TEECCEEECTTSCEEEEEEEEC
T ss_pred HhcCCCeEEEEEECCccHHHHHHHHHHhhcC----CceEEEEEecCCCEEEEEEEEc
Confidence 9999999 899999999999999998 765 7899999999999999998863
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=198.10 Aligned_cols=200 Identities=18% Similarity=0.165 Sum_probs=144.4
Q ss_pred eecCeEEEeCCCCcccC----chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPR----SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178 (322)
Q Consensus 103 ~f~~~~~~v~~~~~ipr----p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~ 178 (322)
+|++..+.+.+++++|+ |+++.+++.+++.+.....++.+|||+|||+|.+++.++...++.+|+|+|+|+.+++.
T Consensus 25 ~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~ 104 (254)
T 2h00_A 25 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY 104 (254)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred HcCCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 46788899999999998 78887887777655432112379999999999999999988778899999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC---CCCeeEEEEcCCCCCCC-CCCCC-ChhhhcccccccccCCC-
Q psy7093 179 TEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL---EQKFDLVVSNPPYVPSL-DIPKL-EPEIALYEDIKALDGGH- 252 (322)
Q Consensus 179 A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~---~~~fDlIv~NPPy~~~~-~~~~l-~~~v~~~ep~~al~~g~- 252 (322)
|++|+..+++.++++++++|+ .+.+...+. .++||+|++||||+... +...+ .+++..++|..+++++.
T Consensus 105 a~~~~~~~~~~~~v~~~~~d~-----~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (254)
T 2h00_A 105 AKKNVEQNNLSDLIKVVKVPQ-----KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGIT 179 (254)
T ss_dssp HHHHHHHTTCTTTEEEEECCT-----TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTT
T ss_pred HHHHHHHcCCCccEEEEEcch-----hhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHH
Confidence 999999999888899999997 221111122 25899999999999765 32333 35566788988888766
Q ss_pred ------ChhHHHHHHHHHHhccCccCcEEEEEEcCCCH-HHHHHHHHHcCCCCceeeEEEecCCCC
Q psy7093 253 ------DGLNIIKPICVFGSNYLKPNGSIFLETNHDHL-DKIKEWLGICGHHMKLKLVENYKDFNN 311 (322)
Q Consensus 253 ------~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~-~~~~~~l~~~~~~~~~~~v~~~~D~~g 311 (322)
+++.++..++..+.++++++|+++++++..+. ..+.+++++.| |..+++.....|
T Consensus 180 ~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~G----f~~v~~~~~~~g 241 (254)
T 2h00_A 180 EIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQG----VPKVTYTEFCQG 241 (254)
T ss_dssp TTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTT----CSEEEEEEEEET
T ss_pred HHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcC----CCceEEEEEecC
Confidence 78999999999999999999999999987665 88999999986 677776655444
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=182.55 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=139.9
Q ss_pred eecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 103 ~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.||+..+.+.+++++|+++++.++ +..... ++.+|||+||| +|.+++.+++.. +.+|+|+|+|+.+++.|++
T Consensus 25 ~~~~~~~~~~~~~~~p~~~~~~l~---~~~~~~---~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~ 97 (230)
T 3evz_A 25 ALFGLDIEYHPKGLVTTPISRYIF---LKTFLR---GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARR 97 (230)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHH---HHTTCC---SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHH
T ss_pred HhcCCceecCCCeEeCCCchhhhH---hHhhcC---CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHH
Confidence 478888999999999999987663 222211 23799999999 999999999985 6899999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
|+..+++ +++++++|+.. +.. +..++||+|++||||+...+. ..++|..++.++..|++.+..+
T Consensus 98 ~~~~~~~--~v~~~~~d~~~---~~~----~~~~~fD~I~~npp~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
T 3evz_A 98 NIERNNS--NVRLVKSNGGI---IKG----VVEGTFDVIFSAPPYYDKPLG-------RVLTEREAIGGGKYGEEFSVKL 161 (230)
T ss_dssp HHHHTTC--CCEEEECSSCS---STT----TCCSCEEEEEECCCCC----------------------CCSSSCHHHHHH
T ss_pred HHHHhCC--CcEEEeCCchh---hhh----cccCceeEEEECCCCcCCccc-------cccChhhhhccCccchHHHHHH
Confidence 9999887 59999999611 122 235789999999999986652 1367888999999999999999
Q ss_pred HHHHhccCccCcEEEEEEcCC--CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 262 CVFGSNYLKPNGSIFLETNHD--HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~--~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
++.+.++|+|||.+++.+... +...+.+++++.|+ ....++. ..-....|++..+|
T Consensus 162 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~--~~~~~~~-~~g~~~~~~l~f~~ 219 (230)
T 3evz_A 162 LEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGY--SVKDIKF-KVGTRWRHSLIFFK 219 (230)
T ss_dssp HHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTC--EEEEEEE-CCCC-CEEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCC--ceEEEEe-cCCCeEEEEEEEec
Confidence 999999999999999977653 46778888888874 2333333 34455566666665
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=162.00 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=129.1
Q ss_pred CCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q psy7093 114 PVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~ 193 (322)
.+++|+|+++.+++.+ +.... ++.+|||+|||+|.++..+++.. +|+|+|+|+.+++. .++++
T Consensus 2 ~v~~P~~~~~~l~~~l-~~~~~---~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----------~~~~~ 64 (170)
T 3q87_B 2 DWYEPGEDTYTLMDAL-EREGL---EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----------HRGGN 64 (170)
T ss_dssp CSCCCCHHHHHHHHHH-HHHTC---CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----------CSSSC
T ss_pred cccCcCccHHHHHHHH-HhhcC---CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----------ccCCe
Confidence 4789999999999884 33222 23699999999999999999983 99999999999887 24589
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
++++|+ .+.+ ..++||+|++||||+...+... +.+|.++..+++.+++.+ |||
T Consensus 65 ~~~~d~-----~~~~----~~~~fD~i~~n~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l-----pgG 117 (170)
T 3q87_B 65 LVRADL-----LCSI----NQESVDVVVFNPPYVPDTDDPI-------------IGGGYLGREVIDRFVDAV-----TVG 117 (170)
T ss_dssp EEECST-----TTTB----CGGGCSEEEECCCCBTTCCCTT-------------TBCCGGGCHHHHHHHHHC-----CSS
T ss_pred EEECCh-----hhhc----ccCCCCEEEECCCCccCCcccc-------------ccCCcchHHHHHHHHhhC-----CCC
Confidence 999999 4433 3478999999999998665321 678888887777776665 999
Q ss_pred EEEEEE-cCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 274 SIFLET-NHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 274 ~l~~e~-~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.+++.. +..+.+.+.+++++.| |..+.+.++..+.+|++..+.
T Consensus 118 ~l~~~~~~~~~~~~l~~~l~~~g----f~~~~~~~~~~~~e~~~~~~~ 161 (170)
T 3q87_B 118 MLYLLVIEANRPKEVLARLEERG----YGTRILKVRKILGETVYIIKG 161 (170)
T ss_dssp EEEEEEEGGGCHHHHHHHHHHTT----CEEEEEEEEECSSSEEEEEEE
T ss_pred EEEEEEecCCCHHHHHHHHHHCC----CcEEEEEeeccCCceEEEEEE
Confidence 998854 5688999999999986 788999999999999998765
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=160.95 Aligned_cols=190 Identities=17% Similarity=0.172 Sum_probs=143.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCC-CCCCeEEEEc
Q psy7093 69 EKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSN-HTPTRMIEIG 147 (322)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~-~~~~~iLDlg 147 (322)
..+..+++++.+.+..+++++.. ...|++... .+|+++.+++.+++.+.... .++.+|||+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiG 73 (207)
T 1jsx_A 11 DAGISLTDHQKNQLIAYVNMLHK---------WNKAYNLTS--------VRDPNEMLVRHILDSIVVAPYLQGERFIDVG 73 (207)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHH---------HC--------------------CHHHHHHHHHHHHGGGCCSSEEEEET
T ss_pred HcCCCCCHHHHHHHHHHHHHHHH---------hcccccccc--------cCCHHHHHHHHHHhhhhhhhhcCCCeEEEEC
Confidence 34567899999999999988875 222333321 27888888888887765321 1237999999
Q ss_pred CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCC
Q psy7093 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 148 ~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~ 227 (322)
||+|.++..++..+|+.+++++|+|+.+++.|++|+...++.+ ++++++|+ .+.. +.++||+|++|..
T Consensus 74 ~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~-----~~~~----~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 74 TGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRV-----EEFP----SEPPFDGVISRAF-- 141 (207)
T ss_dssp CTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCT-----TTSC----CCSCEEEEECSCS--
T ss_pred CCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecch-----hhCC----ccCCcCEEEEecc--
Confidence 9999999999999889999999999999999999999988776 99999998 3322 2468999999631
Q ss_pred CCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEE---
Q psy7093 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVE--- 304 (322)
Q Consensus 228 ~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~--- 304 (322)
+ .+..+++.+.++|+|||.++++.+..+.+.+.+++. | |..++
T Consensus 142 ---------------~-------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g----~~~~~~~~ 187 (207)
T 1jsx_A 142 ---------------A-------------SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--E----YQVESVVK 187 (207)
T ss_dssp ---------------S-------------SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--T----EEEEEEEE
T ss_pred ---------------C-------------CHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--C----Cceeeeee
Confidence 0 045899999999999999999999999888888765 3 66665
Q ss_pred -EecCCCCCCeEEEEEEc
Q psy7093 305 -NYKDFNNKDRFVELKLV 321 (322)
Q Consensus 305 -~~~D~~g~~R~~~~~~~ 321 (322)
..+|..|..+++.++|.
T Consensus 188 ~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 188 LQVPALDGERHLVVIKAN 205 (207)
T ss_dssp EECC--CCEEEEEEEEEC
T ss_pred eccCCCCCceEEEEEEec
Confidence 67889999999998875
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=174.49 Aligned_cols=187 Identities=16% Similarity=0.259 Sum_probs=147.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHH-------cCCCceeEecceeec---CeEEEeCCCCccc--CchhHHHHHHHHHHhccCC
Q psy7093 70 KNTELTNDQITHLNKLCECRL-------ARMPVQYIIKEWNFR---DLTLKMTPPVFIP--RSETEELIDIITDKLESSN 137 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~-------~~~p~~yi~g~~~f~---~~~~~v~~~~~ip--rp~te~lv~~i~~~~~~~~ 137 (322)
...+++.+..+.+.++.+++. .++|++|+.|..+|+ +.+|.++++.|++ ++.++.+++.+++.+....
T Consensus 207 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~ 286 (433)
T 1uwv_A 207 HTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP 286 (433)
T ss_dssp ESSCCCHHHHHHHHHHHHHHTCEEEEESSSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCT
T ss_pred ecCCCCHHHHHHHHHHhhcccEEEEEECCCCeEEEEeCCCcEEEECCEEEEECcccccccCHHHHHHHHHHHHHhhcCCC
Confidence 355677777888888888775 678999999999888 9999999999997 6689999999998886432
Q ss_pred CCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCCCC
Q psy7093 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLEQK 216 (322)
Q Consensus 138 ~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~~~ 216 (322)
+.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|++|+..+++. +++|+++|+ .+.+.. .+..++
T Consensus 287 --~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~-----~~~l~~~~~~~~~ 356 (433)
T 1uwv_A 287 --EDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENL-----EEDVTKQPWAKNG 356 (433)
T ss_dssp --TCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCT-----TSCCSSSGGGTTC
T ss_pred --CCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCH-----HHHhhhhhhhcCC
Confidence 379999999999999999988 689999999999999999999999876 699999999 443321 123468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
||+|++||||.... .+++... .++|++++++.+.+.....-...+.+.|+
T Consensus 357 fD~Vv~dPPr~g~~-----------------------------~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l~~~Gy 406 (433)
T 1uwv_A 357 FDKVLLDPARAGAA-----------------------------GVMQQII-KLEPIRIVYVSCNPATLARDSEALLKAGY 406 (433)
T ss_dssp CSEEEECCCTTCCH-----------------------------HHHHHHH-HHCCSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCccHH-----------------------------HHHHHHH-hcCCCeEEEEECChHHHHhhHHHHHHCCc
Confidence 99999999996422 2222222 26899999887766554444455666654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-20 Score=163.14 Aligned_cols=170 Identities=18% Similarity=0.260 Sum_probs=119.3
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
.+..+...+..+-+..++..+. ...... .++.+|||+|||+|.+++.++...+. +|+|+|+++.+++.|++|+.
T Consensus 20 ~~~~i~q~~~~~~~~~d~~ll~----~~~~~~-~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~ 93 (259)
T 3lpm_A 20 ENLRIIQSPSVFSFSIDAVLLA----KFSYLP-IRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVA 93 (259)
T ss_dssp TTEEEEEBTTTBCCCHHHHHHH----HHCCCC-SSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccCcHHHHHHH----HHhcCC-CCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHH
Confidence 3567777777775543332222 222222 02379999999999999999998544 99999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCC----hhhhcccccccccCCCChhHHHHH
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE----PEIALYEDIKALDGGHDGLNIIKP 260 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~----~~v~~~ep~~al~~g~~gl~~~~~ 260 (322)
.+++.++++++++|+ .+.. ..+..++||+|++||||.......... .....|++ ...+..
T Consensus 94 ~~~~~~~v~~~~~D~-----~~~~-~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~----------~~~~~~ 157 (259)
T 3lpm_A 94 YNQLEDQIEIIEYDL-----KKIT-DLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEV----------MCTLED 157 (259)
T ss_dssp HTTCTTTEEEECSCG-----GGGG-GTSCTTCEEEEEECCCC---------------------------------HHHHH
T ss_pred HCCCcccEEEEECcH-----HHhh-hhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccc----------cCCHHH
Confidence 999988899999998 3332 223467899999999998762211111 11222222 233678
Q ss_pred HHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 261 ICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 261 ~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
+++.+.++|+|||.+++.++..+...+.+.+.++++
T Consensus 158 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~ 193 (259)
T 3lpm_A 158 TIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRL 193 (259)
T ss_dssp HHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTE
T ss_pred HHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCC
Confidence 999999999999999999989999999999988763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=157.09 Aligned_cols=144 Identities=12% Similarity=0.205 Sum_probs=112.7
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
|.|..+.+.+ ..+||.++.+.+.+.+.+... ..++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|
T Consensus 10 ~~g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~ 86 (189)
T 3p9n_A 10 AGGRRIAVPP--RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARN 86 (189)
T ss_dssp TTTCEEECCS--CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHH
T ss_pred cCCcEecCCC--CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHH
Confidence 7888888877 667999999999888887541 113479999999999999988775 567899999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..+++ ++++++++|+ .+... .+..++||+|++||||.... ..+..++
T Consensus 87 ~~~~~~-~~v~~~~~d~-----~~~~~-~~~~~~fD~i~~~~p~~~~~-------------------------~~~~~~l 134 (189)
T 3p9n_A 87 IEALGL-SGATLRRGAV-----AAVVA-AGTTSPVDLVLADPPYNVDS-------------------------ADVDAIL 134 (189)
T ss_dssp HHHHTC-SCEEEEESCH-----HHHHH-HCCSSCCSEEEECCCTTSCH-------------------------HHHHHHH
T ss_pred HHHcCC-CceEEEEccH-----HHHHh-hccCCCccEEEECCCCCcch-------------------------hhHHHHH
Confidence 999987 5699999998 43321 12357899999999987531 1245788
Q ss_pred HHHhc--cCccCcEEEEEEcCC
Q psy7093 263 VFGSN--YLKPNGSIFLETNHD 282 (322)
Q Consensus 263 ~~~~~--~Lk~gG~l~~e~~~~ 282 (322)
..+.+ +|+|||.+++++...
T Consensus 135 ~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 135 AALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHHHHSSSCCTTCEEEEEEETT
T ss_pred HHHHhcCccCCCeEEEEEecCC
Confidence 88887 999999999998654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-20 Score=163.68 Aligned_cols=150 Identities=17% Similarity=0.276 Sum_probs=107.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEccCCCcccccccC----cCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM---HNVANQLQVFHAEIDSKGQVKNLQ----PDL 212 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~---~~l~~~i~~~~~D~~~~~~~~~l~----~~~ 212 (322)
+.+|||+|||+|.+++.++...|..+|+|+|+++.+++.|++|+.. +++.++++++++|+ .+..+ ..+
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~-----~~~~~~~~~~~~ 111 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV-----TLRAKARVEAGL 111 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT-----TCCHHHHHHTTC
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH-----HHHhhhhhhhcc
Confidence 3699999999999999999998889999999999999999999988 88877899999999 33311 012
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~ 292 (322)
..++||+|++||||..... ...++.. ...|+..+..+ +..+++.+.++|+|||.++++++..+...+.+.++
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~--~~~~~~~---~~~a~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~ 183 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGD--RRTPDAL---KAEAHAMTEGL---FEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACG 183 (260)
T ss_dssp CTTCEEEEEECCCC--------------------------CC---HHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHT
T ss_pred CCCCcCEEEECCCCcCCCC--CCCcCHH---HHHHhhcCcCC---HHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHH
Confidence 4578999999999997642 1222211 12233332222 56899999999999999999999888777777776
Q ss_pred HcCCCCceeeEEEec
Q psy7093 293 ICGHHMKLKLVENYK 307 (322)
Q Consensus 293 ~~~~~~~~~~v~~~~ 307 (322)
+. |..+.+..
T Consensus 184 ~~-----~~~~~i~~ 193 (260)
T 2ozv_A 184 SR-----FGGLEITL 193 (260)
T ss_dssp TT-----EEEEEEEE
T ss_pred hc-----CCceEEEE
Confidence 53 44444444
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=154.72 Aligned_cols=152 Identities=19% Similarity=0.241 Sum_probs=118.9
Q ss_pred ceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHH
Q psy7093 95 VQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174 (322)
Q Consensus 95 ~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~ 174 (322)
+.++.| .|++..+.+.++. .+||.++.+++.+++.+.... ++.+|||+|||+|.+++.+++. +..+|+|+|+|+.
T Consensus 4 ~~i~~g--~~~~~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~~-~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~ 78 (187)
T 2fhp_A 4 MRVISG--EYGGRRLKALDGD-NTRPTTDKVKESIFNMIGPYF-DGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFA 78 (187)
T ss_dssp CBCCSS--TTTTCBCCCCCCC-SSCCCCHHHHHHHHHHHCSCC-SSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHH
T ss_pred eEEeec--cccCccccCCCCC-CcCcCHHHHHHHHHHHHHhhc-CCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHH
Confidence 345555 4789999998876 789999999999998885421 2379999999999999998885 5679999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCC
Q psy7093 175 ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253 (322)
Q Consensus 175 al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~ 253 (322)
+++.|++|+..+++.++++++++|+ .+.++. ....++||+|++||||....
T Consensus 79 ~~~~a~~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~fD~i~~~~~~~~~~----------------------- 130 (187)
T 2fhp_A 79 ALKVIKENIAITKEPEKFEVRKMDA-----NRALEQFYEEKLQFDLVLLDPPYAKQE----------------------- 130 (187)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEESCH-----HHHHHHHHHTTCCEEEEEECCCGGGCC-----------------------
T ss_pred HHHHHHHHHHHhCCCcceEEEECcH-----HHHHHHHHhcCCCCCEEEECCCCCchh-----------------------
Confidence 9999999999988877899999998 432210 01256899999999987321
Q ss_pred hhHHHHHHHHHH--hccCccCcEEEEEEcCCC
Q psy7093 254 GLNIIKPICVFG--SNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 254 gl~~~~~~l~~~--~~~Lk~gG~l~~e~~~~~ 283 (322)
...++..+ .++|+|||+++++++..+
T Consensus 131 ----~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 131 ----IVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp ----HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ----HHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 12333333 889999999999887654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-21 Score=184.22 Aligned_cols=183 Identities=14% Similarity=0.225 Sum_probs=114.3
Q ss_pred HHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEe----------cceeecCeEEEeCCCCcccCchhH
Q psy7093 54 AHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYII----------KEWNFRDLTLKMTPPVFIPRSETE 123 (322)
Q Consensus 54 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~----------g~~~f~~~~~~v~~~~~iprp~te 123 (322)
+++++.++..++. .. .++++.+.+..++++|.+++|++|++ +..+||+..+. .+.++.|++.++
T Consensus 71 ~~~l~~~~~~l~l--~~---~~~~~~~~~~~ll~~~~~~~pl~~i~~~r~~~~~~~~~~~~y~~~~~-~~~~L~d~~~t~ 144 (480)
T 3b3j_A 71 SFIITLGCNSVLI--QF---ATPHDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQ-QQNMMQDYVRTG 144 (480)
T ss_dssp ------------------------------------------------------CCEEEEGGGCSCH-HHHHHHHHHHHH
T ss_pred hhhhcCChHHhhc--cC---CCHHHHHHHHHHHHHHHcCCcHHHHHhhhhhhhchhhHHHHHhhhcc-chhhhcChHhHH
Confidence 5666666555442 21 25667888999999999999999999 77888887766 777888999999
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+.+.+++.+.... +.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++|++.+++.++++++++|+
T Consensus 145 ~~~~~il~~l~~~~--~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~---- 216 (480)
T 3b3j_A 145 TYQRAILQNHTDFK--DKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV---- 216 (480)
T ss_dssp HHHHHHHHTGGGTT--TCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCT----
T ss_pred HHHHHHHHhhhhcC--CCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECch----
Confidence 99999988876543 379999999999999999884 678999999998 9999999999999988899999998
Q ss_pred cccccCcCcCCCCeeEEEEcCC-CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPP-YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPP-y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.+ ++ ..++||+|++|+| |+...+ -....+..+.++|+|||.++++++
T Consensus 217 -~~-~~---~~~~fD~Ivs~~~~~~~~~e-------------------------~~~~~l~~~~~~LkpgG~li~~~~ 264 (480)
T 3b3j_A 217 -EE-VS---LPEQVDIIISEPMGYMLFNE-------------------------RMLESYLHAKKYLKPSGNMFPTIG 264 (480)
T ss_dssp -TT-CC---CSSCEEEEECCCCHHHHTCH-------------------------HHHHHHHHGGGGEEEEEEEESCEE
T ss_pred -hh-Cc---cCCCeEEEEEeCchHhcCcH-------------------------HHHHHHHHHHHhcCCCCEEEEEec
Confidence 33 21 1358999999998 432211 023456678899999999987663
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=161.02 Aligned_cols=168 Identities=11% Similarity=0.114 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHH
Q psy7093 76 NDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITI 155 (322)
Q Consensus 76 ~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~ 155 (322)
.++...+.+++.++.+++|++|+.+..+||...+.....++.|++. . ++.+|||+|||+|.+++
T Consensus 33 ~~~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~~--------------~--~~~~vLDiG~G~G~~~i 96 (249)
T 3g89_A 33 LEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLW--------------Q--GPLRVLDLGTGAGFPGL 96 (249)
T ss_dssp HHHHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSCC--------------C--SSCEEEEETCTTTTTHH
T ss_pred HHHHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhccccc--------------C--CCCEEEEEcCCCCHHHH
Confidence 4667888889999999999999999999988776666555554331 1 23799999999999999
Q ss_pred HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCC
Q psy7093 156 SLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKL 235 (322)
Q Consensus 156 ~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l 235 (322)
.++..+|+.+|+++|+|+.+++.|++|+..+++.+ ++++++|+ .+........++||+|+++-- .+
T Consensus 97 ~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~-----~~~~~~~~~~~~fD~I~s~a~----~~---- 162 (249)
T 3g89_A 97 PLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRA-----EVLAREAGHREAYARAVARAV----AP---- 162 (249)
T ss_dssp HHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCH-----HHHTTSTTTTTCEEEEEEESS----CC----
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcH-----HHhhcccccCCCceEEEECCc----CC----
Confidence 99999999999999999999999999999999875 99999998 322111012468999999520 00
Q ss_pred ChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHH---HHHHHcC
Q psy7093 236 EPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIK---EWLGICG 295 (322)
Q Consensus 236 ~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~---~~l~~~~ 295 (322)
+..+++.+.++|+|||.+++..|....+++. +.+...|
T Consensus 163 ----------------------~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G 203 (249)
T 3g89_A 163 ----------------------LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLG 203 (249)
T ss_dssp ----------------------HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcC
Confidence 3478999999999999999888876655544 4455555
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-19 Score=152.47 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=122.6
Q ss_pred eCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q psy7093 111 MTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190 (322)
Q Consensus 111 v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~ 190 (322)
..+.+++|+|++. ..++ .+.+.. ++.+|||+|||+|.+++.+++..|+.+|+|+|+|+.+++.|++|+...++ .
T Consensus 18 ~~~~~~~~~p~~~-~~~~-~~~f~~---~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~ 91 (214)
T 1yzh_A 18 ANPQYVVLNPLEA-KAKW-RDLFGN---DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-P 91 (214)
T ss_dssp TCTTTEECCGGGT-TTTH-HHHHTS---CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-S
T ss_pred hCCCEEecChhhc-ccCH-HHHcCC---CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-C
Confidence 3456777888752 1122 223332 23789999999999999999999999999999999999999999999887 4
Q ss_pred cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 191 QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 191 ~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
+++++++|+ .+ ++..+..++||+|++|+|-.... ..|++... .+..+++.+.++|+
T Consensus 92 ~v~~~~~d~-----~~-~~~~~~~~~~D~i~~~~~~~~~~---------~~~~~~~~---------~~~~~l~~~~~~Lk 147 (214)
T 1yzh_A 92 NIKLLWVDG-----SD-LTDYFEDGEIDRLYLNFSDPWPK---------KRHEKRRL---------TYKTFLDTFKRILP 147 (214)
T ss_dssp SEEEEECCS-----SC-GGGTSCTTCCSEEEEESCCCCCS---------GGGGGGST---------TSHHHHHHHHHHSC
T ss_pred CEEEEeCCH-----HH-HHhhcCCCCCCEEEEECCCCccc---------cchhhhcc---------CCHHHHHHHHHHcC
Confidence 699999998 33 32223467899999998733211 12333221 14689999999999
Q ss_pred cCcEEEEEEcC-CCHHHHHHHHHHcCCCCceeeEEEecCCC
Q psy7093 271 PNGSIFLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFN 310 (322)
Q Consensus 271 ~gG~l~~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~D~~ 310 (322)
|||.++++++. .+...+.+.+.+.| |..+.+..|+.
T Consensus 148 pgG~l~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~d~~ 184 (214)
T 1yzh_A 148 ENGEIHFKTDNRGLFEYSLVSFSQYG----MKLNGVWLDLH 184 (214)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHHT----CEEEEEESSGG
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHCC----Ceeeecccccc
Confidence 99999999865 44667777888776 67788888764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-19 Score=159.03 Aligned_cols=175 Identities=14% Similarity=0.125 Sum_probs=137.8
Q ss_pred CCCceeEecceeecCeEEEeCCC--CcccCchhHHHHHHH---------------HHHhccCCCCCCeEEEEcCchhHHH
Q psy7093 92 RMPVQYIIKEWNFRDLTLKMTPP--VFIPRSETEELIDII---------------TDKLESSNHTPTRMIEIGSGTGAIT 154 (322)
Q Consensus 92 ~~p~~yi~g~~~f~~~~~~v~~~--~~iprp~te~lv~~i---------------~~~~~~~~~~~~~iLDlg~GsG~~~ 154 (322)
..|..++.|. ++|..+.+.++ +++|+|+++.+.+.+ +..+... ++.+|||+|||+|.++
T Consensus 52 ~~~~~~i~g~--~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~VLDiG~G~G~~~ 127 (277)
T 1o54_A 52 IIDLNEVFEK--GPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVK--EGDRIIDTGVGSGAMC 127 (277)
T ss_dssp EEEHHHHTTS--CTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCC--TTCEEEEECCTTSHHH
T ss_pred eEEHHHhcCC--CCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhCCC--CCCEEEEECCcCCHHH
Confidence 4556666776 57888988887 778999999887532 2222222 3479999999999999
Q ss_pred HHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCC
Q psy7093 155 ISLLKH-FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIP 233 (322)
Q Consensus 155 ~~la~~-~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~ 233 (322)
+.+++. .|..+|+++|+|+.+++.|++|+..+++.++++++++|+ .+.+ +.++||+|++|||..
T Consensus 128 ~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~----~~~~~D~V~~~~~~~------ 192 (277)
T 1o54_A 128 AVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-----SEGF----DEKDVDALFLDVPDP------ 192 (277)
T ss_dssp HHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-----GGCC----SCCSEEEEEECCSCG------
T ss_pred HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH-----HHcc----cCCccCEEEECCcCH------
Confidence 999998 467899999999999999999999988866799999998 4432 346899999998742
Q ss_pred CCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCCCCceeeEEEecCCCCC
Q psy7093 234 KLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312 (322)
Q Consensus 234 ~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~ 312 (322)
..+++.+.++|+|||.+++.++. .+...+.+.+++.| |..++++.++.+.
T Consensus 193 -------------------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~g----f~~~~~~~~~~~~ 243 (277)
T 1o54_A 193 -------------------------WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELP----FIRIEVWESLFRP 243 (277)
T ss_dssp -------------------------GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSS----EEEEEEECCCCCC
T ss_pred -------------------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCC----CceeEEEEEeeee
Confidence 14677888999999999998875 46667777887764 8888888887665
Q ss_pred Ce
Q psy7093 313 DR 314 (322)
Q Consensus 313 ~R 314 (322)
.+
T Consensus 244 ~~ 245 (277)
T 1o54_A 244 YK 245 (277)
T ss_dssp EE
T ss_pred eE
Confidence 43
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=161.80 Aligned_cols=143 Identities=20% Similarity=0.407 Sum_probs=116.1
Q ss_pred eEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..|...+++|. +++.++.+++.+.+.+.....++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.|++|+
T Consensus 198 ~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~ 275 (381)
T 3dmg_A 198 YTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGL 275 (381)
T ss_dssp EEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHH
T ss_pred EEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHH
Confidence 46888999998 6788999999888776421123379999999999999999998 679999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++. ++++++|+ .+... ..++||+|++||||+..... ..+....+++
T Consensus 276 ~~~~~~--v~~~~~D~-----~~~~~---~~~~fD~Ii~npp~~~~~~~---------------------~~~~~~~~l~ 324 (381)
T 3dmg_A 276 EANALK--AQALHSDV-----DEALT---EEARFDIIVTNPPFHVGGAV---------------------ILDVAQAFVN 324 (381)
T ss_dssp HHTTCC--CEEEECST-----TTTSC---TTCCEEEEEECCCCCTTCSS---------------------CCHHHHHHHH
T ss_pred HHcCCC--eEEEEcch-----hhccc---cCCCeEEEEECCchhhcccc---------------------cHHHHHHHHH
Confidence 988865 89999998 44322 24789999999999853321 2234678999
Q ss_pred HHhccCccCcEEEEEEcCC
Q psy7093 264 FGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~ 282 (322)
.+.++|+|||.+++.+...
T Consensus 325 ~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 325 VAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp HHHHHEEEEEEEEEEECTT
T ss_pred HHHHhcCcCcEEEEEEcCC
Confidence 9999999999999977654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-18 Score=143.32 Aligned_cols=182 Identities=20% Similarity=0.345 Sum_probs=130.4
Q ss_pred CceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCH
Q psy7093 94 PVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSK 173 (322)
Q Consensus 94 p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~ 173 (322)
..+++.+...-....+...+++|.|+. .....+.+++.+... ++.+|||+|||+|.++..+++. ..+++|+|+|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~ 84 (194)
T 1dus_A 10 DVKIVEDILRGKKLKFKTDSGVFSYGK-VDKGTKILVENVVVD--KDDDILDLGCGYGVIGIALADE--VKSTTMADINR 84 (194)
T ss_dssp CEEEEEEEETTEEEEEEEETTSTTTTS-CCHHHHHHHHHCCCC--TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCH
T ss_pred cccEEeeecCCCceEEEeCCCcCCccc-cchHHHHHHHHcccC--CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCH
Confidence 345665553333445566778887652 223344455555443 3379999999999999999988 78999999999
Q ss_pred HHHHHHHHHHHHcCCCC-cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC
Q psy7093 174 HACDLTEQNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252 (322)
Q Consensus 174 ~al~~A~~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~ 252 (322)
.+++.|++|+...++.+ +++++++|+ .+.. ..++||+|++||||...
T Consensus 85 ~~~~~a~~~~~~~~~~~~~~~~~~~d~-----~~~~----~~~~~D~v~~~~~~~~~----------------------- 132 (194)
T 1dus_A 85 RAIKLAKENIKLNNLDNYDIRVVHSDL-----YENV----KDRKYNKIITNPPIRAG----------------------- 132 (194)
T ss_dssp HHHHHHHHHHHHTTCTTSCEEEEECST-----TTTC----TTSCEEEEEECCCSTTC-----------------------
T ss_pred HHHHHHHHHHHHcCCCccceEEEECch-----hccc----ccCCceEEEECCCcccc-----------------------
Confidence 99999999999888765 699999998 4432 35689999999998641
Q ss_pred ChhHHHHHHHHHHhccCccCcEEEEEEcCCCH-HHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDHL-DKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 253 ~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~-~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.+....+++.+.++|+|||.+++.+...+. ..+.+.+++. |..+++..+..|. .++.++|
T Consensus 133 --~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~-~~~~~~k 193 (194)
T 1dus_A 133 --KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-----FGNVETVTIKGGY-RVLKSKK 193 (194)
T ss_dssp --HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-----HSCCEEEEEETTE-EEEEEEC
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-----hcceEEEecCCcE-EEEEEee
Confidence 122568999999999999999998876553 3377777765 3455666655543 3344433
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=159.84 Aligned_cols=202 Identities=16% Similarity=0.270 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhH
Q psy7093 73 ELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGA 152 (322)
Q Consensus 73 ~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~ 152 (322)
.++.+....+-+.+.++..++|.++ | ..++|++....+ ..+++.+... .++.+|||+|||||.
T Consensus 81 ~~~~~~~g~~ye~~~~~~~~~~~~~--g-------------~~~TP~~i~~~~-~~ll~~l~~~-~~~~~VlDp~cGsG~ 143 (344)
T 2f8l_A 81 NFSNEEIRKGLQLALLKGMKHGIQV--N-------------HQMTPDSIGFIV-AYLLEKVIQK-KKNVSILDPACGTAN 143 (344)
T ss_dssp GSCHHHHHHHHHHHHHHHTSSSCCG--G-------------GCCCCHHHHHHH-HHHHHHHHTT-CSEEEEEETTCTTSH
T ss_pred cCChhHHHHHHHHHHHHHhhccccc--C-------------cCCChHHHHHHH-HHHHHHhcCC-CCCCEEEeCCCCccH
Confidence 3567777777676777776677654 1 234566444333 3333333211 123689999999999
Q ss_pred HHHHHHHhCCC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCC
Q psy7093 153 ITISLLKHFPK-----LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 153 ~~~~la~~~~~-----~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~ 227 (322)
+++.+++..+. .+++|+|+++.+++.|+.|+...++ ++.++++|. +... ..++||+|++||||.
T Consensus 144 ~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~-----l~~~----~~~~fD~Ii~NPPfg 212 (344)
T 2f8l_A 144 LLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDG-----LANL----LVDPVDVVISDLPVG 212 (344)
T ss_dssp HHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCT-----TSCC----CCCCEEEEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCC-----CCcc----ccCCccEEEECCCCC
Confidence 99999988654 7899999999999999999998887 489999998 5432 346899999999974
Q ss_pred CCCCCCCCChhhhcccccccccCCCChhH-HHHHHHHHHhccCccCcEEEEEE-----cCCCHHHHHHHHHHcCCCCcee
Q psy7093 228 PSLDIPKLEPEIALYEDIKALDGGHDGLN-IIKPICVFGSNYLKPNGSIFLET-----NHDHLDKIKEWLGICGHHMKLK 301 (322)
Q Consensus 228 ~~~~~~~l~~~v~~~ep~~al~~g~~gl~-~~~~~l~~~~~~Lk~gG~l~~e~-----~~~~~~~~~~~l~~~~~~~~~~ 301 (322)
.... ......|++. ..+|.. .+..++..+.++|+|||++++.+ ...+...+++++.+.++ ..
T Consensus 213 ~~~~----~~~~~~~~~~-----~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~---~~ 280 (344)
T 2f8l_A 213 YYPD----DENAKTFELC-----REEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH---IE 280 (344)
T ss_dssp EESC----HHHHTTSTTC-----CSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE---EE
T ss_pred CcCc----hhhhhhcccc-----CCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe---EE
Confidence 3211 1112345552 233433 34578999999999999999988 56778889998887752 12
Q ss_pred -eEEEecCCCCCCe
Q psy7093 302 -LVENYKDFNNKDR 314 (322)
Q Consensus 302 -~v~~~~D~~g~~R 314 (322)
.+..-.+.++..+
T Consensus 281 ~ii~lp~~~F~~~~ 294 (344)
T 2f8l_A 281 GIIKLPETLFKSEQ 294 (344)
T ss_dssp EEEECCGGGSCC-C
T ss_pred EeeeCChhhccCCC
Confidence 2445566666554
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=163.32 Aligned_cols=184 Identities=13% Similarity=0.026 Sum_probs=114.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHH---HcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEE
Q psy7093 68 VEKNTELTNDQITHLNKLCECR---LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMI 144 (322)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~rr---~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iL 144 (322)
.+.+..+++++...++.++.+| .+++|++|++|..+|||..++ |.++.+++.+.+...... +.+||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~g~~~~~g~~~~---------~~~~~l~~~l~~~~~~~~--~~~vL 84 (281)
T 3bzb_A 16 GTPPDFYRERQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVW---------SGARALADTLCWQPELIA--GKTVC 84 (281)
T ss_dssp -------------CEEEEECCSSCC-CCEEEEECC--------------------CHHHHHHHHHHHCGGGTT--TCEEE
T ss_pred hCCCccCChHHHHHHHHHHhhccccccCCeEEEECCCCCCCCceee---------cHHHHHHHHHHhcchhcC--CCeEE
Confidence 4556677788888888888888 889999999999999987765 688999999887664332 37999
Q ss_pred EEcCchhHHHHHHHHhCCCCEEEEEeC-CHHHHHHHHHHH-----HHcCCC----CcEEEEEccCCCcccccccCcCc--
Q psy7093 145 EIGSGTGAITISLLKHFPKLKAIAIDQ-SKHACDLTEQNA-----VMHNVA----NQLQVFHAEIDSKGQVKNLQPDL-- 212 (322)
Q Consensus 145 Dlg~GsG~~~~~la~~~~~~~v~~vDi-s~~al~~A~~n~-----~~~~l~----~~i~~~~~D~~~~~~~~~l~~~~-- 212 (322)
|+|||+|.+++.+++. +..+|+++|+ |+.+++.|++|+ ..+++. +++++...|+ .+......
T Consensus 85 DlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~ 158 (281)
T 3bzb_A 85 ELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRW-----GDSPDSLQRC 158 (281)
T ss_dssp ETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCT-----TSCTHHHHHH
T ss_pred EecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecC-----CCccHHHHhh
Confidence 9999999999999886 4459999999 899999999999 555544 4688887777 22111100
Q ss_pred -CCCCeeEEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc---c--CcEEEEEEcCCC--
Q psy7093 213 -LEQKFDLVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK---P--NGSIFLETNHDH-- 283 (322)
Q Consensus 213 -~~~~fDlIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk---~--gG~l~~e~~~~~-- 283 (322)
..++||+|++ +.+|.... +..+++.+.++|+ | ||.+++.+....
T Consensus 159 ~~~~~fD~Ii~~dvl~~~~~---------------------------~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~ 211 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFHQA---------------------------HDALLRSVKMLLALPANDPTAVALVTFTHHRPH 211 (281)
T ss_dssp HSCSSBSEEEEESCCSCGGG---------------------------HHHHHHHHHHHBCCTTTCTTCEEEEEECC----
T ss_pred ccCCCCCEEEEeCcccChHH---------------------------HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc
Confidence 2468999987 77665311 4578899999999 9 998877555432
Q ss_pred ----HHHHHHHHHHcC
Q psy7093 284 ----LDKIKEWLGICG 295 (322)
Q Consensus 284 ----~~~~~~~l~~~~ 295 (322)
...+.+.+++.|
T Consensus 212 ~~~~~~~~~~~l~~~G 227 (281)
T 3bzb_A 212 LAERDLAFFRLVNADG 227 (281)
T ss_dssp ----CTHHHHHHHHST
T ss_pred cchhHHHHHHHHHhcC
Confidence 233445566654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.8e-19 Score=150.69 Aligned_cols=178 Identities=18% Similarity=0.214 Sum_probs=121.8
Q ss_pred ceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHH
Q psy7093 95 VQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174 (322)
Q Consensus 95 ~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~ 174 (322)
+..+.|. |.+..+.+.++. .+||.++.+.+.+.+.+.... ++.+|||+|||+|.+++.++.. ...+|+|+|+|+.
T Consensus 13 ~~ii~G~--~~g~~l~~~~~~-~~rp~~~~~~~~l~~~l~~~~-~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~ 87 (201)
T 2ift_A 13 VRIIAGL--WRGRKLPVLNSE-GLRPTGDRVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKT 87 (201)
T ss_dssp EECCSST--TTTCEEECC----------CHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHH
T ss_pred eEEEEee--eCCcEecCCCCC-CcCcCHHHHHHHHHHHHHHhc-CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHH
Confidence 3455554 788888887653 458888888888777765420 2279999999999999987776 3469999999999
Q ss_pred HHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCcCCCC-eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC
Q psy7093 175 ACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQK-FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252 (322)
Q Consensus 175 al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~~~~-fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~ 252 (322)
+++.|++|+..+++. ++++++++|+ .+.++. ...++ ||+|++||||.. ..
T Consensus 88 ~l~~a~~~~~~~~~~~~~v~~~~~d~-----~~~~~~-~~~~~~fD~I~~~~~~~~-~~--------------------- 139 (201)
T 2ift_A 88 VANQLKKNLQTLKCSSEQAEVINQSS-----LDFLKQ-PQNQPHFDVVFLDPPFHF-NL--------------------- 139 (201)
T ss_dssp HHHHHHHHHHHTTCCTTTEEEECSCH-----HHHTTS-CCSSCCEEEEEECCCSSS-CH---------------------
T ss_pred HHHHHHHHHHHhCCCccceEEEECCH-----HHHHHh-hccCCCCCEEEECCCCCC-cc---------------------
Confidence 999999999998874 5699999998 443321 12467 999999999852 11
Q ss_pred ChhHHHHHHHHHH--hccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 253 DGLNIIKPICVFG--SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 253 ~gl~~~~~~l~~~--~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
+..+++.+ .++|+|||.+++++.... +. ... .+|..+ ....+|..++...++.
T Consensus 140 -----~~~~l~~~~~~~~LkpgG~l~i~~~~~~---~~----~~~--~~~~~~--~~~~yG~~~~~~~~~~ 194 (201)
T 2ift_A 140 -----AEQAISLLCENNWLKPNALIYVETEKDK---PL----ITP--ENWTLL--KEKTTGIVSYRLYQNL 194 (201)
T ss_dssp -----HHHHHHHHHHTTCEEEEEEEEEEEESSS---CC----CCC--TTEEEE--EEEEETTEEEEEEEEC
T ss_pred -----HHHHHHHHHhcCccCCCcEEEEEECCCC---Cc----ccc--chhHHH--HHHhcCCEEEEEEecc
Confidence 23556666 678999999999887765 11 111 134432 3346788887777664
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-19 Score=160.13 Aligned_cols=248 Identities=14% Similarity=0.105 Sum_probs=160.8
Q ss_pred cccHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecc
Q psy7093 23 ANVVDNVLKEWTAKFEQAK-IPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKE 101 (322)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~ 101 (322)
.||.++++.+.+++|.++| ++....+....+...+.......+ ...+..+.. .+...+.....+.+.....+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~g~~--~~~~~~~~~----~w~~~~~~~~~~~~~~~~l~~ 89 (305)
T 3ocj_A 16 SADLAGMVRQARQRILLQGNVPGFDVARQIELLHGLAESELGRF--LLLYRGLNA----EWTHRLVTHQPGSGALAPLER 89 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHCCBTTBCHHHHHHHHHHHHHSHHHHH--HHHHSSCCH----HHHHHHHHCCTTCSCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhhHHHH--HHhcCCchH----HHHHHHHHhcCCCCccchHHH
Confidence 6999999999999999887 655555665555444432221111 111222221 122222111111111111111
Q ss_pred eeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHH-HhCCCCEEEEEeCCHHHHHHHH
Q psy7093 102 WNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLL-KHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 102 ~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la-~~~~~~~v~~vDis~~al~~A~ 180 (322)
+++ ...+.++.++...+.+.+.+...+. ++.+|||+|||+|.++..++ ...|+.+|+|+|+|+.+++.|+
T Consensus 90 -~~~----~~~~~~l~~~~~~~~~~~~l~~~l~----~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 160 (305)
T 3ocj_A 90 -VFY----ERLPAVLATRERHGHFRRALQRHLR----PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGAT 160 (305)
T ss_dssp -HHH----HHCHHHHHHHHHHHHHHHHHHHHCC----TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHH
T ss_pred -HHH----hhchhhhcchHHHHHHHHHHHhhCC----CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 111 1112222223332223333322222 23799999999999999996 5568899999999999999999
Q ss_pred HHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHH
Q psy7093 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260 (322)
Q Consensus 181 ~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~ 260 (322)
+|+...++.++++++++|+ .+ ++ +. ++||+|++|.+++...+. .....
T Consensus 161 ~~~~~~~~~~~v~~~~~d~-----~~-~~--~~-~~fD~v~~~~~~~~~~~~-----------------------~~~~~ 208 (305)
T 3ocj_A 161 RLAAGHALAGQITLHRQDA-----WK-LD--TR-EGYDLLTSNGLNIYEPDD-----------------------ARVTE 208 (305)
T ss_dssp HHHTTSTTGGGEEEEECCG-----GG-CC--CC-SCEEEEECCSSGGGCCCH-----------------------HHHHH
T ss_pred HHHHhcCCCCceEEEECch-----hc-CC--cc-CCeEEEEECChhhhcCCH-----------------------HHHHH
Confidence 9999988888899999998 33 22 23 789999999887643321 12446
Q ss_pred HHHHHhccCccCcEEEEEEc---------C------------------------------CCHHHHHHHHHHcCCCCcee
Q psy7093 261 ICVFGSNYLKPNGSIFLETN---------H------------------------------DHLDKIKEWLGICGHHMKLK 301 (322)
Q Consensus 261 ~l~~~~~~Lk~gG~l~~e~~---------~------------------------------~~~~~~~~~l~~~~~~~~~~ 301 (322)
+++.+.++|+|||.+++..- . ...+.+.+++++.| |.
T Consensus 209 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----F~ 284 (305)
T 3ocj_A 209 LYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAG----FT 284 (305)
T ss_dssp HHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTT----CE
T ss_pred HHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCC----CE
Confidence 89999999999999998651 1 24778889999986 79
Q ss_pred eEEEecCCCCCCeEEEEEEc
Q psy7093 302 LVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 302 ~v~~~~D~~g~~R~~~~~~~ 321 (322)
.+++..+..+...+++++|.
T Consensus 285 ~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 285 DLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp EEEEECCTTSSSCEEEEECC
T ss_pred EEEEEcccCceeeEEEEecC
Confidence 99999888999999998875
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=148.78 Aligned_cols=141 Identities=16% Similarity=0.227 Sum_probs=114.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|+|||||++++.+++..|..+|+|+|+++.+++.|++|++.+++.++++++++|+ ++.++. ..+||+|
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~-----l~~l~~---~~~~D~I 88 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG-----LAAFEE---TDQVSVI 88 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG-----GGGCCG---GGCCCEE
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch-----hhhccc---CcCCCEE
Confidence 68999999999999999999888899999999999999999999999998999999999 666531 2369988
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCce
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKL 300 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~ 300 (322)
+.. |. |-+.+..++..+.+.|+++|++++.- ..+...+++++.++|+ ..
T Consensus 89 via---------------------------G~-Gg~~i~~Il~~~~~~L~~~~~lVlq~-~~~~~~vr~~L~~~Gf--~i 137 (225)
T 3kr9_A 89 TIA---------------------------GM-GGRLIARILEEGLGKLANVERLILQP-NNREDDLRIWLQDHGF--QI 137 (225)
T ss_dssp EEE---------------------------EE-CHHHHHHHHHHTGGGCTTCCEEEEEE-SSCHHHHHHHHHHTTE--EE
T ss_pred EEc---------------------------CC-ChHHHHHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHCCC--EE
Confidence 751 22 33557899999999999999999854 4789999999999874 23
Q ss_pred eeEEEecCCCCCCeEEEEEE
Q psy7093 301 KLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 301 ~~v~~~~D~~g~~R~~~~~~ 320 (322)
....+..+....+.++.+.+
T Consensus 138 ~~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 138 VAESILEEAGKFYEILVVEA 157 (225)
T ss_dssp EEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEe
Confidence 33345566655666666654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=149.17 Aligned_cols=148 Identities=15% Similarity=0.235 Sum_probs=109.0
Q ss_pred ceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHH
Q psy7093 95 VQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174 (322)
Q Consensus 95 ~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~ 174 (322)
+.++.|. |.+..+.+.++ ..+||.++.+.+.+++.+.... ++.+|||+|||+|.+++.++.. ...+|+++|+|+.
T Consensus 14 ~~ii~g~--~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~~-~~~~vLDlgcG~G~~~~~l~~~-~~~~V~~vD~s~~ 88 (202)
T 2fpo_A 14 IRIIGGQ--WRGRKLPVPDS-PGLRPTTDRVRETLFNWLAPVI-VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRA 88 (202)
T ss_dssp EECCSGG--GTTCEEECCCC-------CHHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHH
T ss_pred EEEEEEE--EcCcEecCCCC-CCCCCCHHHHHHHHHHHHHhhc-CCCeEEEeCCCcCHHHHHHHhc-CCCEEEEEECCHH
Confidence 4566665 68899888765 4568999999888888775420 1279999999999999988776 2359999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCCh
Q psy7093 175 ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG 254 (322)
Q Consensus 175 al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~g 254 (322)
+++.|++|+..+++ ++++++++|+ .+.++. ..++||+|++||||....
T Consensus 89 ~l~~a~~~~~~~~~-~~v~~~~~D~-----~~~~~~--~~~~fD~V~~~~p~~~~~------------------------ 136 (202)
T 2fpo_A 89 VSQQLIKNLATLKA-GNARVVNSNA-----MSFLAQ--KGTPHNIVFVDPPFRRGL------------------------ 136 (202)
T ss_dssp HHHHHHHHHHHTTC-CSEEEECSCH-----HHHHSS--CCCCEEEEEECCSSSTTT------------------------
T ss_pred HHHHHHHHHHHcCC-CcEEEEECCH-----HHHHhh--cCCCCCEEEECCCCCCCc------------------------
Confidence 99999999999887 4699999998 443321 346899999999986311
Q ss_pred hHHHHHHHHHH--hccCccCcEEEEEEcCC
Q psy7093 255 LNIIKPICVFG--SNYLKPNGSIFLETNHD 282 (322)
Q Consensus 255 l~~~~~~l~~~--~~~Lk~gG~l~~e~~~~ 282 (322)
+..+++.+ .++|+|||++++++...
T Consensus 137 ---~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 137 ---LEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp ---HHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred ---HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 22444444 35699999999988653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=147.58 Aligned_cols=141 Identities=17% Similarity=0.233 Sum_probs=114.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|+|||||++++.+++..|..+|+|+|+++.+++.|++|++.+++.++++++++|. ++.+. +..+||+|
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~-----l~~~~---~~~~~D~I 94 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG-----LSAFE---EADNIDTI 94 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG-----GGGCC---GGGCCCEE
T ss_pred CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch-----hhccc---cccccCEE
Confidence 68999999999999999999777899999999999999999999999999999999999 66543 22379987
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCce
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKL 300 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~ 300 (322)
+. +|..| +.+..++..+.+.|+++|.+++ -+......+++++.++|+ ..
T Consensus 95 vi---------------------------aGmGg-~lI~~IL~~~~~~l~~~~~lIl-qp~~~~~~lr~~L~~~Gf--~i 143 (230)
T 3lec_A 95 TI---------------------------CGMGG-RLIADILNNDIDKLQHVKTLVL-QPNNREDDLRKWLAANDF--EI 143 (230)
T ss_dssp EE---------------------------EEECH-HHHHHHHHHTGGGGTTCCEEEE-EESSCHHHHHHHHHHTTE--EE
T ss_pred EE---------------------------eCCch-HHHHHHHHHHHHHhCcCCEEEE-ECCCChHHHHHHHHHCCC--EE
Confidence 74 12223 6688999999999999999887 556779999999999985 34
Q ss_pred eeEEEecCCCCCCeEEEEEE
Q psy7093 301 KLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 301 ~~v~~~~D~~g~~R~~~~~~ 320 (322)
....+..|....+.++.+++
T Consensus 144 ~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 144 VAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEe
Confidence 44456677777777777765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=157.78 Aligned_cols=144 Identities=19% Similarity=0.337 Sum_probs=108.9
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
+.++...+++|.+. ......+.+++.+.... +.+|||+|||+|.+++.+++..|+.+|+++|+|+.+++.|++|+..
T Consensus 192 ~~~~~~~pg~Fs~~-~~d~~~~~ll~~l~~~~--~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ 268 (375)
T 4dcm_A 192 DWTIHNHANVFSRT-GLDIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET 268 (375)
T ss_dssp TEEEEECTTCTTCS-SCCHHHHHHHHTCCCSC--CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEeCCCcccCC-cccHHHHHHHHhCcccC--CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHH
Confidence 56788889999852 22233344556665442 3799999999999999999999999999999999999999999999
Q ss_pred cCCCC--cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 186 HNVAN--QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 186 ~~l~~--~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+++.+ +++++.+|+ ++.+ ..++||+|++||||+....... .....+++
T Consensus 269 ngl~~~~~v~~~~~D~-----~~~~----~~~~fD~Ii~nppfh~~~~~~~---------------------~~~~~~l~ 318 (375)
T 4dcm_A 269 NMPEALDRCEFMINNA-----LSGV----EPFRFNAVLCNPPFHQQHALTD---------------------NVAWEMFH 318 (375)
T ss_dssp HCGGGGGGEEEEECST-----TTTC----CTTCEEEEEECCCC-------C---------------------CHHHHHHH
T ss_pred cCCCcCceEEEEechh-----hccC----CCCCeeEEEECCCcccCcccCH---------------------HHHHHHHH
Confidence 88754 588899999 5433 4578999999999986433211 12457899
Q ss_pred HHhccCccCcEEEEEEcCC
Q psy7093 264 FGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~ 282 (322)
.+.++|+|||.+++.....
T Consensus 319 ~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 319 HARRCLKINGELYIVANRH 337 (375)
T ss_dssp HHHHHEEEEEEEEEEEETT
T ss_pred HHHHhCCCCcEEEEEEECC
Confidence 9999999999999966543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-19 Score=146.96 Aligned_cols=135 Identities=19% Similarity=0.320 Sum_probs=97.7
Q ss_pred CCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q psy7093 113 PPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192 (322)
Q Consensus 113 ~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i 192 (322)
|...++||.++.+.+.+.+.+.... ++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++|++..++.+++
T Consensus 6 p~~~~~rp~~~~~~~~~~~~l~~~~-~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 83 (177)
T 2esr_A 6 LDGKITRPTSDKVRGAIFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRF 83 (177)
T ss_dssp ------------CHHHHHHHHCSCC-CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGE
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhc-CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCce
Confidence 3345679999999999998886321 3379999999999999999987 6679999999999999999999998887789
Q ss_pred EEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh--ccCc
Q psy7093 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS--NYLK 270 (322)
Q Consensus 193 ~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~--~~Lk 270 (322)
+++++|+ .+.++. ..++||+|++||||... .+..+++.+. ++|+
T Consensus 84 ~~~~~d~-----~~~~~~--~~~~fD~i~~~~~~~~~---------------------------~~~~~~~~l~~~~~L~ 129 (177)
T 2esr_A 84 TLLKMEA-----ERAIDC--LTGRFDLVFLDPPYAKE---------------------------TIVATIEALAAKNLLS 129 (177)
T ss_dssp EEECSCH-----HHHHHH--BCSCEEEEEECCSSHHH---------------------------HHHHHHHHHHHTTCEE
T ss_pred EEEECcH-----HHhHHh--hcCCCCEEEECCCCCcc---------------------------hHHHHHHHHHhCCCcC
Confidence 9999998 443221 23579999999998521 0224444444 9999
Q ss_pred cCcEEEEEEcCCC
Q psy7093 271 PNGSIFLETNHDH 283 (322)
Q Consensus 271 ~gG~l~~e~~~~~ 283 (322)
|||++++++...+
T Consensus 130 ~gG~l~~~~~~~~ 142 (177)
T 2esr_A 130 EQVMVVCETDKTV 142 (177)
T ss_dssp EEEEEEEEEETTC
T ss_pred CCcEEEEEECCcc
Confidence 9999999987654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=142.37 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=108.4
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|++..+...++ ++|.++.+.+.+++.+...-.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|+
T Consensus 9 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~ 83 (171)
T 1ws6_A 9 ARGVALKVPAS---ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENV 83 (171)
T ss_dssp GTTCEECCCTT---CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHH
T ss_pred cCCeEecCCCC---CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHH
Confidence 78999999999 68888999988888775421023799999999999999999983 45999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
...++ +++++++|+ .+.++.. ...++||+|++||||. ... ..++
T Consensus 84 ~~~~~--~~~~~~~d~-----~~~~~~~~~~~~~~D~i~~~~~~~--~~~--------------------------~~~~ 128 (171)
T 1ws6_A 84 RRTGL--GARVVALPV-----EVFLPEAKAQGERFTVAFMAPPYA--MDL--------------------------AALF 128 (171)
T ss_dssp HHHTC--CCEEECSCH-----HHHHHHHHHTTCCEEEEEECCCTT--SCT--------------------------THHH
T ss_pred HHcCC--ceEEEeccH-----HHHHHhhhccCCceEEEEECCCCc--hhH--------------------------HHHH
Confidence 98887 599999998 4322110 0124799999999997 211 1233
Q ss_pred HHH--hccCccCcEEEEEEcCCC
Q psy7093 263 VFG--SNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 263 ~~~--~~~Lk~gG~l~~e~~~~~ 283 (322)
+.+ .++|+|||.+++++...+
T Consensus 129 ~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 129 GELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HHHHHHTCEEEEEEEEEEEETTS
T ss_pred HHHHhhcccCCCcEEEEEeCCcc
Confidence 333 499999999999987654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=157.91 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=123.8
Q ss_pred CCCceeE-ecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEe
Q psy7093 92 RMPVQYI-IKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAID 170 (322)
Q Consensus 92 ~~p~~yi-~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vD 170 (322)
+.|.||| +++.+|+|+.+.++..+.+|+++.....+.+....-.....+.+|||+|||+|.++..+++..+..+|+++|
T Consensus 72 ~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VD 151 (334)
T 1xj5_A 72 KSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCE 151 (334)
T ss_dssp ECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEE
T ss_pred ecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEE
Confidence 7899999 899999999999999999988763222222222111011134799999999999999999987788999999
Q ss_pred CCHHHHHHHHHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhccccccc
Q psy7093 171 QSKHACDLTEQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKA 247 (322)
Q Consensus 171 is~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~a 247 (322)
+|+.+++.|++|+... ++ ..+++++++|+ .+.++. ...++||+|++|++-... +
T Consensus 152 is~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~-----~~~l~~-~~~~~fDlIi~d~~~p~~--------------~--- 208 (334)
T 1xj5_A 152 IDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG-----VAFLKN-AAEGSYDAVIVDSSDPIG--------------P--- 208 (334)
T ss_dssp SCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH-----HHHHHT-SCTTCEEEEEECCCCTTS--------------G---
T ss_pred CCHHHHHHHHHHHHhhccccCCCcEEEEECCH-----HHHHHh-ccCCCccEEEECCCCccC--------------c---
Confidence 9999999999998653 33 35799999998 443321 134689999999752110 0
Q ss_pred ccCCCChhHHHHHHHHHHhccCccCcEEEEEE--cCCCHHHHHHHH
Q psy7093 248 LDGGHDGLNIIKPICVFGSNYLKPNGSIFLET--NHDHLDKIKEWL 291 (322)
Q Consensus 248 l~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~--~~~~~~~~~~~l 291 (322)
..+ .+++.+++.+.++|+|||++++.. .+.+...+.++.
T Consensus 209 ----~~~-l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 249 (334)
T 1xj5_A 209 ----AKE-LFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIV 249 (334)
T ss_dssp ----GGG-GGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHH
T ss_pred ----chh-hhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHH
Confidence 001 114689999999999999999964 445555444443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=146.54 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=113.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|++++.+++..|..+|+|+|+++.+++.|++|++.+++.+++++.++|. ++.+. +..+||+|
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~-----l~~~~---~~~~~D~I 94 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG-----LAVIE---KKDAIDTI 94 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG-----GGGCC---GGGCCCEE
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch-----hhccC---ccccccEE
Confidence 68999999999999999999777899999999999999999999999998999999999 66543 22369988
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCce
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKL 300 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~ 300 (322)
++ +|. |-+.+..++..+.+.|+++|++++ -+......+++++.++|+ .+
T Consensus 95 vi---------------------------agm-Gg~lI~~IL~~~~~~L~~~~~lIl-q~~~~~~~lr~~L~~~Gf--~i 143 (244)
T 3gnl_A 95 VI---------------------------AGM-GGTLIRTILEEGAAKLAGVTKLIL-QPNIAAWQLREWSEQNNW--LI 143 (244)
T ss_dssp EE---------------------------EEE-CHHHHHHHHHHTGGGGTTCCEEEE-EESSCHHHHHHHHHHHTE--EE
T ss_pred EE---------------------------eCC-chHHHHHHHHHHHHHhCCCCEEEE-EcCCChHHHHHHHHHCCC--EE
Confidence 75 111 225678999999999999999887 456678999999999974 23
Q ss_pred eeEEEecCCCCCCeEEEEEE
Q psy7093 301 KLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 301 ~~v~~~~D~~g~~R~~~~~~ 320 (322)
....+..+....+.++.+.+
T Consensus 144 ~~E~lv~e~~k~Yeii~~~~ 163 (244)
T 3gnl_A 144 TSEAILREDNKVYEIMVLAP 163 (244)
T ss_dssp EEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEe
Confidence 33455566666666666654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-17 Score=150.51 Aligned_cols=165 Identities=13% Similarity=0.183 Sum_probs=121.1
Q ss_pred ecCeEEEeCCCCccc---CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIP---RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 104 f~~~~~~v~~~~~ip---rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
..+..|.+.+..+.. -++++...+++.+.+... .++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.|+
T Consensus 116 e~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~-~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~ 192 (332)
T 2igt_A 116 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETA-DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAK 192 (332)
T ss_dssp ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHS-SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred ECCEEEEEecCccccceechHHHHHHHHHHHHHHhc-CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence 357788887765543 357777777777776421 12369999999999999999987 459999999999999999
Q ss_pred HHHHHcCCCC-cEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH
Q psy7093 181 QNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258 (322)
Q Consensus 181 ~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~ 258 (322)
+|+..+++.+ +++++++|+ ++.+... ...++||+|++||||........+ ....+.+
T Consensus 193 ~n~~~~gl~~~~v~~i~~D~-----~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~----------------~~~~~~~ 251 (332)
T 2igt_A 193 ENQVLAGLEQAPIRWICEDA-----MKFIQREERRGSTYDIILTDPPKFGRGTHGEV----------------WQLFDHL 251 (332)
T ss_dssp HHHHHHTCTTSCEEEECSCH-----HHHHHHHHHHTCCBSEEEECCCSEEECTTCCE----------------EEHHHHH
T ss_pred HHHHHcCCCccceEEEECcH-----HHHHHHHHhcCCCceEEEECCccccCCchHHH----------------HHHHHHH
Confidence 9999999876 599999998 4433210 014589999999997653321100 0134457
Q ss_pred HHHHHHHhccCccCcEEEEEEcCCC---HHHHHHHHH
Q psy7093 259 KPICVFGSNYLKPNGSIFLETNHDH---LDKIKEWLG 292 (322)
Q Consensus 259 ~~~l~~~~~~Lk~gG~l~~e~~~~~---~~~~~~~l~ 292 (322)
..+++.+.++|+|||++++++...+ ...+.+++.
T Consensus 252 ~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~ 288 (332)
T 2igt_A 252 PLMLDICREILSPKALGLVLTAYSIRASFYSMHELMR 288 (332)
T ss_dssp HHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHH
Confidence 8999999999999999888876543 455666665
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=151.91 Aligned_cols=135 Identities=15% Similarity=0.158 Sum_probs=102.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCc-------
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKH--FPKLKAIAIDQSKHACDLTEQNAVMH---NVANQ------- 191 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~--~~~~~v~~vDis~~al~~A~~n~~~~---~l~~~------- 191 (322)
.+++.+++.+... .+.+|||+|||+|.+++.++.. .+..+|+|+|+|+.+++.|++|+... ++.++
T Consensus 38 ~l~~~~l~~~~~~--~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGD--GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCC--SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC--CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 5566666554332 2379999999999999999988 66789999999999999999998766 44333
Q ss_pred ------------------EE-------------EEEccCCCcccccccCcC-c-CCCCeeEEEEcCCCCCCCCCCCCChh
Q psy7093 192 ------------------LQ-------------VFHAEIDSKGQVKNLQPD-L-LEQKFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 192 ------------------i~-------------~~~~D~~~~~~~~~l~~~-~-~~~~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
++ +.++|+ ++..+.. . ...+||+|++||||+.......
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~---- 186 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADV-----FDPRALSAVLAGSAPDVVLTDLPYGERTHWEG---- 186 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCT-----TCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS----
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeeccc-----ccccccccccCCCCceEEEeCCCeeccccccc----
Confidence 66 999998 4432100 0 2347999999999987654321
Q ss_pred hhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 239 v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
++|.+.+..+++.+.++|+|||++++ ++..+
T Consensus 187 -------------~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~ 217 (250)
T 1o9g_A 187 -------------QVPGQPVAGLLRSLASALPAHAVIAV-TDRSR 217 (250)
T ss_dssp -------------CCCHHHHHHHHHHHHHHSCTTCEEEE-EESSS
T ss_pred -------------cccccHHHHHHHHHHHhcCCCcEEEE-eCcch
Confidence 25677899999999999999999998 66543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-18 Score=155.11 Aligned_cols=169 Identities=16% Similarity=0.179 Sum_probs=122.8
Q ss_pred CCCceeEecce-eecCeEEEeCCCCcccCchh----HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEE
Q psy7093 92 RMPVQYIIKEW-NFRDLTLKMTPPVFIPRSET----EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKA 166 (322)
Q Consensus 92 ~~p~~yi~g~~-~f~~~~~~v~~~~~iprp~t----e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v 166 (322)
.-|.|||.+.. .++|..+.++..+.+|+++. |.++...+.. .. .+.+|||+|||+|.++..+++..+..+|
T Consensus 68 ~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~--~~--~~~~VLdiG~G~G~~~~~l~~~~~~~~v 143 (321)
T 2pt6_A 68 KSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTV--SK--EPKNVLVVGGGDGGIIRELCKYKSVENI 143 (321)
T ss_dssp ECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHH--SS--SCCEEEEEECTTCHHHHHHTTCTTCCEE
T ss_pred ECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhc--CC--CCCEEEEEcCCccHHHHHHHHcCCCCEE
Confidence 57889998774 67899999999889999883 4333322211 11 2379999999999999999988778899
Q ss_pred EEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhccc
Q psy7093 167 IAIDQSKHACDLTEQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYE 243 (322)
Q Consensus 167 ~~vDis~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~e 243 (322)
+++|+|+.+++.|++|+... ++ ..+++++++|+ .+.++. ..++||+|++|++-.. +
T Consensus 144 ~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~-----~~~l~~--~~~~fDvIi~d~~~p~--------------~ 202 (321)
T 2pt6_A 144 DICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA-----SKFLEN--VTNTYDVIIVDSSDPI--------------G 202 (321)
T ss_dssp EEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH-----HHHHHH--CCSCEEEEEEECCCSS--------------S
T ss_pred EEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccH-----HHHHhh--cCCCceEEEECCcCCC--------------C
Confidence 99999999999999998652 23 35799999998 443321 2468999999984210 1
Q ss_pred ccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHH
Q psy7093 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGI 293 (322)
Q Consensus 244 p~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~ 293 (322)
|...++ -+.+++.+.++|+|||+++++++. .+.+.+.++.+.
T Consensus 203 ~~~~l~--------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 246 (321)
T 2pt6_A 203 PAETLF--------NQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGY 246 (321)
T ss_dssp GGGGGS--------SHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHH
T ss_pred cchhhh--------HHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHH
Confidence 111111 157889999999999999998754 355555555544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=145.54 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=116.7
Q ss_pred CCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q psy7093 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 112 ~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~ 191 (322)
.+.+++|+|++ ...++. +.... .+.+|||+|||+|.+++.+|+.+|+.+|+|+|+|+.+++.|++|+...++. +
T Consensus 16 ~~~~~~~~~~~-~~~~~~-~~f~~---~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-n 89 (213)
T 2fca_A 16 NADIAISNPAD-YKGKWN-TVFGN---DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-N 89 (213)
T ss_dssp TTTTBCSCGGG-GTTCHH-HHHTS---CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-S
T ss_pred CccEEecCccc-cCCCHH-HHcCC---CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-C
Confidence 45566677654 222222 22222 237899999999999999999999999999999999999999999998875 4
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
++++++|+ .+ ++..+..+.||.|++|.|-..... .+++.. + .+..+++.+.++|+|
T Consensus 90 v~~~~~d~-----~~-l~~~~~~~~~d~v~~~~~~p~~~~---------~~~~~r-l--------~~~~~l~~~~~~Lkp 145 (213)
T 2fca_A 90 VKLLNIDA-----DT-LTDVFEPGEVKRVYLNFSDPWPKK---------RHEKRR-L--------TYSHFLKKYEEVMGK 145 (213)
T ss_dssp EEEECCCG-----GG-HHHHCCTTSCCEEEEESCCCCCSG---------GGGGGS-T--------TSHHHHHHHHHHHTT
T ss_pred EEEEeCCH-----HH-HHhhcCcCCcCEEEEECCCCCcCc---------cccccc-c--------CcHHHHHHHHHHcCC
Confidence 99999998 33 221234578999999865321111 011111 0 135789999999999
Q ss_pred CcEEEEEEcC-CCHHHHHHHHHHcCCCCceeeEEEecCCC
Q psy7093 272 NGSIFLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFN 310 (322)
Q Consensus 272 gG~l~~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~D~~ 310 (322)
||.+++.+.. .+...+.+.+..++ |..+.+..|+.
T Consensus 146 gG~l~~~td~~~~~~~~~~~~~~~g----~~~~~~~~d~~ 181 (213)
T 2fca_A 146 GGSIHFKTDNRGLFEYSLKSFSEYG----LLLTYVSLDLH 181 (213)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHHT----CEEEEEESSGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCC----Ccccccccccc
Confidence 9999998854 34566777777775 56667777754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=144.72 Aligned_cols=149 Identities=10% Similarity=0.086 Sum_probs=112.7
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..|..|.++.......+........+.+.+.. +.+|||+|||+|.+++.+++..+. +|+|+|+|+.+++.|++|+
T Consensus 94 e~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~~----~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~ 168 (278)
T 2frn_A 94 ENGIKYKLDVAKIMFSPANVKERVRMAKVAKP----DELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENI 168 (278)
T ss_dssp ETTEEEEEETTTSCCCGGGHHHHHHHHHHCCT----TCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHH
T ss_pred ECCEEEEEEccceeEcCCcHHHHHHHHHhCCC----CCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHH
Confidence 36788888654322233333334444444432 379999999999999999998443 7999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+++.++++++++|+ .+.. ..++||+|++|||+.. ..++.
T Consensus 169 ~~n~~~~~v~~~~~D~-----~~~~----~~~~fD~Vi~~~p~~~------------------------------~~~l~ 209 (278)
T 2frn_A 169 HLNKVEDRMSAYNMDN-----RDFP----GENIADRILMGYVVRT------------------------------HEFIP 209 (278)
T ss_dssp HHTTCTTTEEEECSCT-----TTCC----CCSCEEEEEECCCSSG------------------------------GGGHH
T ss_pred HHcCCCceEEEEECCH-----HHhc----ccCCccEEEECCchhH------------------------------HHHHH
Confidence 9999988899999999 4433 2568999999999643 14677
Q ss_pred HHhccCccCcEEEEEEcC-------CCHHHHHHHHHHcCC
Q psy7093 264 FGSNYLKPNGSIFLETNH-------DHLDKIKEWLGICGH 296 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~-------~~~~~~~~~l~~~~~ 296 (322)
.+.++|+|||++++.... ...+.+.+.+++.|+
T Consensus 210 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 210 KALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 249 (278)
T ss_dssp HHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred HHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCC
Confidence 888999999999885432 446778888888874
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-17 Score=150.62 Aligned_cols=167 Identities=18% Similarity=0.170 Sum_probs=120.8
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
+.|-.+.+...++....... +.+|||+|||+|.+++.++... |..+++|+|+|+.+++.|++|++..++. ++++.+
T Consensus 184 ~a~l~~~la~~l~~~~~~~~--~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~ 260 (354)
T 3tma_A 184 RGSLTPVLAQALLRLADARP--GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLR 260 (354)
T ss_dssp SCSCCHHHHHHHHHHTTCCT--TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEE
T ss_pred CCCcCHHHHHHHHHHhCCCC--CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEe
Confidence 44566777777777765543 3789999999999999999986 6789999999999999999999999987 799999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+ .+ ++ ...+.||+|++||||...... ..+..+.|..+++.+.++|+|||.++
T Consensus 261 ~D~-----~~-~~--~~~~~~D~Ii~npPyg~r~~~------------------~~~~~~~~~~~~~~~~~~LkpgG~l~ 314 (354)
T 3tma_A 261 ADA-----RH-LP--RFFPEVDRILANPPHGLRLGR------------------KEGLFHLYWDFLRGALALLPPGGRVA 314 (354)
T ss_dssp CCG-----GG-GG--GTCCCCSEEEECCCSCC----------------------CHHHHHHHHHHHHHHHHTSCTTCEEE
T ss_pred CCh-----hh-Cc--cccCCCCEEEECCCCcCccCC------------------cccHHHHHHHHHHHHHHhcCCCcEEE
Confidence 998 33 22 134568999999999643210 01224568899999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCC--CeEEEEEE
Q psy7093 277 LETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK--DRFVELKL 320 (322)
Q Consensus 277 ~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~--~R~~~~~~ 320 (322)
+.++. ...++++++ .| |...+..+=.+|. .++++.+|
T Consensus 315 i~t~~--~~~~~~~~~-~g----~~~~~~~~l~~g~l~~~i~vl~r 353 (354)
T 3tma_A 315 LLTLR--PALLKRALP-PG----FALRHARVVEQGGVYPRVFVLEK 353 (354)
T ss_dssp EEESC--HHHHHHHCC-TT----EEEEEEEECCBTTBCCEEEEEEE
T ss_pred EEeCC--HHHHHHHhh-cC----cEEEEEEEEEeCCEEEEEEEEEc
Confidence 97754 344555555 43 5655444333333 23444544
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-16 Score=135.91 Aligned_cols=162 Identities=17% Similarity=0.261 Sum_probs=118.6
Q ss_pred eEEEeCCCCccc---CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFIP---RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~ip---rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..+.++++..+. .+.+..+.+.+...+. ++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++|+
T Consensus 29 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~----~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~ 103 (205)
T 3grz_A 29 EIIRLDPGLAFGTGNHQTTQLAMLGIERAMV----KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENA 103 (205)
T ss_dssp EEEEESCC-----CCHHHHHHHHHHHHHHCS----SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHH
T ss_pred eeEEecCCcccCCCCCccHHHHHHHHHHhcc----CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHH
Confidence 345566665331 2333344444443332 2379999999999999998875 6679999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
...++.+ +++.++|+ .+. ..++||+|++|+|+. .+..+++
T Consensus 104 ~~~~~~~-v~~~~~d~-----~~~-----~~~~fD~i~~~~~~~-----------------------------~~~~~l~ 143 (205)
T 3grz_A 104 ALNGIYD-IALQKTSL-----LAD-----VDGKFDLIVANILAE-----------------------------ILLDLIP 143 (205)
T ss_dssp HHTTCCC-CEEEESST-----TTT-----CCSCEEEEEEESCHH-----------------------------HHHHHGG
T ss_pred HHcCCCc-eEEEeccc-----ccc-----CCCCceEEEECCcHH-----------------------------HHHHHHH
Confidence 9988876 99999998 432 246899999998752 1457899
Q ss_pred HHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEE
Q psy7093 264 FGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~ 318 (322)
.+.++|+|||.+++. +...+.+.+.+++++.| |..+.+..+ .+...++.-
T Consensus 144 ~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~G----f~~~~~~~~-~~w~~~~~~ 194 (205)
T 3grz_A 144 QLDSHLNEDGQVIFSGIDYLQLPKIEQALAENS----FQIDLKMRA-GRWIGLAIS 194 (205)
T ss_dssp GSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTT----EEEEEEEEE-TTEEEEEEE
T ss_pred HHHHhcCCCCEEEEEecCcccHHHHHHHHHHcC----CceEEeecc-CCEEEEEEe
Confidence 999999999999885 56777888999999886 677766543 344444443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=151.00 Aligned_cols=159 Identities=11% Similarity=0.149 Sum_probs=115.3
Q ss_pred cCeEEEeCCC-----CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Q psy7093 105 RDLTLKMTPP-----VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLT 179 (322)
Q Consensus 105 ~~~~~~v~~~-----~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A 179 (322)
.|.+|.+++. .|++ ++......+.+.+. ++.+|||+|||+|.+++.+|+. ...+|+++|+|+.+++.|
T Consensus 179 ~g~~f~v~~~~~~~t~ff~--~~~~~~~~~~~~~~----~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A 251 (385)
T 2b78_A 179 NGISYNVFLNDGLMTGIFL--DQRQVRNELINGSA----AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALS 251 (385)
T ss_dssp TTEEEEECSSSSSCCSSCG--GGHHHHHHHHHTTT----BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHH
T ss_pred CCEEEEEeccccccCCcCC--cHHHHHHHHHHHhc----CCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence 6889999987 6653 33333334433332 2379999999999999999986 345899999999999999
Q ss_pred HHHHHHcCCCC-cEEEEEccCCCcccccccCcCc-CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHH
Q psy7093 180 EQNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPDL-LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257 (322)
Q Consensus 180 ~~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~-~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~ 257 (322)
++|++.+++.+ +++++++|+ ++.++... ...+||+|++||||.....- ...+.+..
T Consensus 252 ~~N~~~n~~~~~~v~~~~~D~-----~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~-----------------~~~~~~~~ 309 (385)
T 2b78_A 252 LAHFEANHLDMANHQLVVMDV-----FDYFKYARRHHLTYDIIIIDPPSFARNKK-----------------EVFSVSKD 309 (385)
T ss_dssp HHHHHHTTCCCTTEEEEESCH-----HHHHHHHHHTTCCEEEEEECCCCC----------------------CCCCHHHH
T ss_pred HHHHHHcCCCccceEEEECCH-----HHHHHHHHHhCCCccEEEECCCCCCCChh-----------------hHHHHHHH
Confidence 99999999875 799999998 54332100 13589999999999643210 11234566
Q ss_pred HHHHHHHHhccCccCcEEEEEEcCCC--HHHHHHHHH
Q psy7093 258 IKPICVFGSNYLKPNGSIFLETNHDH--LDKIKEWLG 292 (322)
Q Consensus 258 ~~~~l~~~~~~Lk~gG~l~~e~~~~~--~~~~~~~l~ 292 (322)
|..++..+.++|+|||+++++++... .+...+++.
T Consensus 310 ~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~ 346 (385)
T 2b78_A 310 YHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIE 346 (385)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHH
Confidence 88999999999999999999887655 344444443
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-16 Score=130.58 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=101.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+...++ +++++++.|. ..+.. +..++||+
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~------~~l~~-~~~~~fD~ 92 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGH------ENLDH-YVREPIRA 92 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCG------GGGGG-TCCSCEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcH------HHHHh-hccCCcCE
Confidence 379999999999999999988 78999999999999999999999888 5699999776 33221 23568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC------HHHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH------LDKIKEWLGI 293 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~------~~~~~~~l~~ 293 (322)
|++|++|.+..+..... . .+....+++.+.++|||||.+++.+...+ ...+.+++..
T Consensus 93 v~~~~~~~~~~~~~~~~------~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
T 3mti_A 93 AIFNLGYLPSADKSVIT------K-----------PHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIG 155 (185)
T ss_dssp EEEEEC-----------------C-----------HHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcchhccc------C-----------hhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999987753311100 0 01235788999999999999988664322 3456666665
Q ss_pred cCCCCceeeEE--EecCCCCCCeEEEEEE
Q psy7093 294 CGHHMKLKLVE--NYKDFNNKDRFVELKL 320 (322)
Q Consensus 294 ~~~~~~~~~v~--~~~D~~g~~R~~~~~~ 320 (322)
... .+|.... .+.-......++...|
T Consensus 156 l~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (185)
T 3mti_A 156 LDQ-RVFTAMLYQPLNQINTPPFLVMLEK 183 (185)
T ss_dssp SCT-TTEEEEEEEESSCSSCCCEEEEEEE
T ss_pred CCC-ceEEEEEehhhccCCCCCeEEEEEe
Confidence 432 1344333 2222234445665555
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=135.70 Aligned_cols=151 Identities=20% Similarity=0.280 Sum_probs=118.0
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
|....+.+.+++.+... +.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 27 ~~~~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 102 (219)
T 3dlc_A 27 PIYPIIAENIINRFGIT---AGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV 102 (219)
T ss_dssp THHHHHHHHHHHHHCCC---EEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT
T ss_pred cccHHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH
Confidence 34556667777776543 249999999999999999998 78899999999999999999999998877899999998
Q ss_pred CCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ++.++||+|+++..+....+ ...+++.+.++|+|||.+++..
T Consensus 103 -----~~-~~--~~~~~~D~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 103 -----HN-IP--IEDNYADLIVSRGSVFFWED--------------------------VATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp -----TB-CS--SCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----HH-CC--CCcccccEEEECchHhhccC--------------------------HHHHHHHHHHhCCCCCEEEEEe
Confidence 32 22 34678999999876554322 3478999999999999999863
Q ss_pred cCC------------------------------CHHHHHHHHHHcCCCCceeeEEEecCCCCC
Q psy7093 280 NHD------------------------------HLDKIKEWLGICGHHMKLKLVENYKDFNNK 312 (322)
Q Consensus 280 ~~~------------------------------~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~ 312 (322)
... ..+.+.+++++.| |..+++..+..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~v~~~~~~~~~ 207 (219)
T 3dlc_A 149 GFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIG----ISSYEIILGDEGF 207 (219)
T ss_dssp CCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHT----CSSEEEEEETTEE
T ss_pred ccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcC----CCeEEEEecCCce
Confidence 221 1366778888886 7788888766553
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=143.87 Aligned_cols=142 Identities=17% Similarity=0.248 Sum_probs=105.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.+|...|+..|+|+|+|+.+++.|++|+...++.+ +.++++|+ .+.++..++.++||.|
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da-----~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDA-----VEVLHKMIPDNSLRMV 109 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCH-----HHHHHHHSCTTCEEEE
T ss_pred CeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCH-----HHHHHHHcCCCChheE
Confidence 78999999999999999999999999999999999999999999988765 99999998 4432222356799999
Q ss_pred EEc--CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-HHHHHHHHHHcCCC
Q psy7093 221 VSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-LDKIKEWLGICGHH 297 (322)
Q Consensus 221 v~N--PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-~~~~~~~l~~~~~~ 297 (322)
++| +||...... ... + +...+++.+.++|||||.+++.+.+.. .+.+.+.+....
T Consensus 110 ~~~~~~p~~~~~~~----------~rr--~--------~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~-- 167 (218)
T 3dxy_A 110 QLFFPDPWHKARHN----------KRR--I--------VQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSID-- 167 (218)
T ss_dssp EEESCCCCCSGGGG----------GGS--S--------CSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST--
T ss_pred EEeCCCCccchhhh----------hhh--h--------hhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCC--
Confidence 999 666432210 000 0 013689999999999999999886543 455666666554
Q ss_pred CceeeEEEecCCCC
Q psy7093 298 MKLKLVENYKDFNN 311 (322)
Q Consensus 298 ~~~~~v~~~~D~~g 311 (322)
+|..+....|+.+
T Consensus 168 -~~~~~~~~~~~~~ 180 (218)
T 3dxy_A 168 -GYKNLSESNDYVP 180 (218)
T ss_dssp -TEEECCTTSSCBC
T ss_pred -CcccccCcCccCC
Confidence 3666544344433
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-16 Score=133.42 Aligned_cols=134 Identities=20% Similarity=0.205 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+...++..+... ++.+|||+|||+|.+++.+++..|..+|+++|+|+.+++.|++|+...++ ++++++++|+
T Consensus 26 ~~i~~~~l~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~--- 99 (204)
T 3e05_A 26 QEVRAVTLSKLRLQ--DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFA--- 99 (204)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCT---
T ss_pred HHHHHHHHHHcCCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCCh---
Confidence 34445566666544 23799999999999999999998889999999999999999999999887 5699999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH- 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~- 281 (322)
.+.+. ..++||+|++++++. + +..+++.+.++|+|||.+++....
T Consensus 100 --~~~~~---~~~~~D~i~~~~~~~---~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 145 (204)
T 3e05_A 100 --PEGLD---DLPDPDRVFIGGSGG---M--------------------------LEEIIDAVDRRLKSEGVIVLNAVTL 145 (204)
T ss_dssp --TTTCT---TSCCCSEEEESCCTT---C--------------------------HHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred --hhhhh---cCCCCCEEEECCCCc---C--------------------------HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 44432 236799999987653 1 458999999999999999987543
Q ss_pred CCHHHHHHHHHHcCC
Q psy7093 282 DHLDKIKEWLGICGH 296 (322)
Q Consensus 282 ~~~~~~~~~l~~~~~ 296 (322)
.+.+.+.+++++.|+
T Consensus 146 ~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 146 DTLTKAVEFLEDHGY 160 (204)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHCCC
Confidence 556778888888873
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-16 Score=135.49 Aligned_cols=192 Identities=11% Similarity=0.181 Sum_probs=130.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccC---C-CCCCeEEEE
Q psy7093 71 NTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS---N-HTPTRMIEI 146 (322)
Q Consensus 71 ~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~---~-~~~~~iLDl 146 (322)
...+++++.+.+..+...... |+..+ +...+++..+.+.+.+.+.+... . .++.+|||+
T Consensus 15 ~~~l~~~~~~~~~~~~~~l~~-------------~~~~~----~l~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDi 77 (240)
T 1xdz_A 15 GISLSPRQLEQFELYYDMLVE-------------WNEKI----NLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDV 77 (240)
T ss_dssp TCCCCHHHHHHHHHHHHHHHH-------------HHHHS----CCCSCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHH-------------HhHhc----CccccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEe
Confidence 445778888888777766543 11111 12234566666666666544210 0 123799999
Q ss_pred cCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCC
Q psy7093 147 GSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPP 225 (322)
Q Consensus 147 g~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPP 225 (322)
|||+|.+++.++...++.+|+|+|+|+.+++.|++|+..+++.+ ++++++|+ .+ ++.. ...++||+|+++..
T Consensus 78 G~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~-----~~-~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 78 GAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRA-----ET-FGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp CSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCH-----HH-HTTCTTTTTCEEEEEEECC
T ss_pred cCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccH-----HH-hcccccccCCccEEEEecc
Confidence 99999999999988788999999999999999999999998865 99999998 32 2210 01468999999641
Q ss_pred CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHH---HHHHHcCCCCceee
Q psy7093 226 YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIK---EWLGICGHHMKLKL 302 (322)
Q Consensus 226 y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~---~~l~~~~~~~~~~~ 302 (322)
.+ +..+++.+.++|+|||.+++..+....+.+. +.++..| |..
T Consensus 151 ----~~--------------------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g----~~~ 196 (240)
T 1xdz_A 151 ----AR--------------------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLG----GEL 196 (240)
T ss_dssp ----SC--------------------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTT----EEE
T ss_pred ----CC--------------------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcC----CeE
Confidence 00 4589999999999999999988877665544 4455655 554
Q ss_pred EEEe----cCCCCCCeEEEEEE
Q psy7093 303 VENY----KDFNNKDRFVELKL 320 (322)
Q Consensus 303 v~~~----~D~~g~~R~~~~~~ 320 (322)
+.+. ....+...++.++|
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~~k 218 (240)
T 1xdz_A 197 ENIHSFKLPIEESDRNIMVIRK 218 (240)
T ss_dssp EEEEEEECTTTCCEEEEEEEEE
T ss_pred eEEEEEecCCCCCceEEEEEEe
Confidence 4332 12224445555555
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=133.57 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=100.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|||+|||+|.++..+++.+ |..+|+|+|+|+.+++.|++|+...++.++++++++|+ .+. .. ...++||+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~-~~-~~~~~fD~ 96 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-----QNM-DK-YIDCPVKA 96 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-----GGG-GG-TCCSCEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-----HHH-hh-hccCCceE
Confidence 799999999999999999986 56799999999999999999999998867899999998 322 11 13478999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC------CHHHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD------HLDKIKEWLGI 293 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~------~~~~~~~~l~~ 293 (322)
|++||||.+..+..... ..+.+..+++.+.++|+|||.+++..... ....+.+++..
T Consensus 97 v~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
T 3eey_A 97 VMFNLGYLPSGDHSIST-----------------RPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKG 159 (197)
T ss_dssp EEEEESBCTTSCTTCBC-----------------CHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTT
T ss_pred EEEcCCcccCccccccc-----------------CcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHh
Confidence 99999996644322111 11124579999999999999999875322 24556666655
Q ss_pred cC
Q psy7093 294 CG 295 (322)
Q Consensus 294 ~~ 295 (322)
..
T Consensus 160 l~ 161 (197)
T 3eey_A 160 VD 161 (197)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-16 Score=138.96 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=111.6
Q ss_pred cCeEEEeCCC--CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPP--VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~--~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|.++.. .|.|+-.++. ..+.+.+.. +.+|||+|||+|.+++.+|+. +..+|+++|+|+.+++.+++|
T Consensus 95 ~G~~~~~D~~k~~f~~~~~~er--~ri~~~~~~----g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N 167 (278)
T 3k6r_A 95 NGIKYKLDVAKIMFSPANVKER--VRMAKVAKP----DELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVEN 167 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHH--HHHHHHCCT----TCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHH
T ss_pred CCEEEEEeccceEEcCCcHHHH--HHHHHhcCC----CCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHH
Confidence 4666666654 5667766664 455555543 379999999999999999987 557999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.++++++++|. .+.. ..+.||.|++|||+... .++
T Consensus 168 ~~~N~v~~~v~~~~~D~-----~~~~----~~~~~D~Vi~~~p~~~~------------------------------~~l 208 (278)
T 3k6r_A 168 IHLNKVEDRMSAYNMDN-----RDFP----GENIADRILMGYVVRTH------------------------------EFI 208 (278)
T ss_dssp HHHTTCTTTEEEECSCT-----TTCC----CCSCEEEEEECCCSSGG------------------------------GGH
T ss_pred HHHcCCCCcEEEEeCcH-----HHhc----cccCCCEEEECCCCcHH------------------------------HHH
Confidence 99999999999999998 4332 35789999999997531 356
Q ss_pred HHHhccCccCcEEEEE-Ec------CCCHHHHHHHHHHcCC
Q psy7093 263 VFGSNYLKPNGSIFLE-TN------HDHLDKIKEWLGICGH 296 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e-~~------~~~~~~~~~~l~~~~~ 296 (322)
..+.++|++||++.+- +. ....+.++++....|+
T Consensus 209 ~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~ 249 (278)
T 3k6r_A 209 PKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 249 (278)
T ss_dssp HHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCC
Confidence 6678899999998652 21 2235667777777764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=140.21 Aligned_cols=105 Identities=23% Similarity=0.290 Sum_probs=85.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|||+|||+|.++..+++.+ ++++|+|+|+|+.+++.|++++...+...+++++++|+ . .+ +.+.|
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~-----~-~~----~~~~~ 140 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-----R-DI----AIENA 140 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT-----T-TC----CCCSE
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc-----c-cc----ccccc
Confidence 3799999999999999999875 56799999999999999999999888878899999998 2 22 34579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+|++|--.. .++++. ...+++++.+.|||||.+++.
T Consensus 141 d~v~~~~~l~------~~~~~~------------------~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 141 SMVVLNFTLQ------FLEPSE------------------RQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp EEEEEESCGG------GSCHHH------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceeeeeee------ecCchh------------------HhHHHHHHHHHcCCCcEEEEE
Confidence 9999974321 122221 247899999999999998873
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-16 Score=145.68 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=120.7
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
+.|-.+.+...++... .. ++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++|+...++.+++++.++
T Consensus 199 ~a~l~~~la~~l~~~~-~~--~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~ 275 (373)
T 3tm4_A 199 PAHLKASIANAMIELA-EL--DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQG 275 (373)
T ss_dssp TTCCCHHHHHHHHHHH-TC--CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEEC
T ss_pred CCCccHHHHHHHHHhh-cC--CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 3455677777777666 33 33789999999999999999986555899999999999999999999998778999999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ .+ ++ ...++||+|++||||....... ..--++|..+++.+.++| +|.+++
T Consensus 276 D~-----~~-~~--~~~~~fD~Ii~npPyg~r~~~~------------------~~~~~ly~~~~~~l~r~l--~g~~~~ 327 (373)
T 3tm4_A 276 DA-----TQ-LS--QYVDSVDFAISNLPYGLKIGKK------------------SMIPDLYMKFFNELAKVL--EKRGVF 327 (373)
T ss_dssp CG-----GG-GG--GTCSCEEEEEEECCCC------------------------CCHHHHHHHHHHHHHHHE--EEEEEE
T ss_pred Ch-----hh-CC--cccCCcCEEEECCCCCcccCcc------------------hhHHHHHHHHHHHHHHHc--CCeEEE
Confidence 98 33 22 2347899999999997532210 011245789999999988 555555
Q ss_pred EEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 278 ETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 278 e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.++ ....+.+.+.+.| |...+..+=.+|...+-..+.
T Consensus 328 i~~--~~~~~~~~~~~~G----~~~~~~~~~~nG~l~~~~~~~ 364 (373)
T 3tm4_A 328 ITT--EKKAIEEAIAENG----FEIIHHRVIGHGGLMVHLYVV 364 (373)
T ss_dssp EES--CHHHHHHHHHHTT----EEEEEEEEEEETTEEEEEEEE
T ss_pred EEC--CHHHHHHHHHHcC----CEEEEEEEEEcCCEEEEEEec
Confidence 443 4566777887775 676666666667766655543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=139.74 Aligned_cols=153 Identities=20% Similarity=0.277 Sum_probs=116.6
Q ss_pred cCeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 105 ~~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+..+.++|+.++ +.+.+...++.+...+. ++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++
T Consensus 87 ~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~----~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~ 160 (254)
T 2nxc_A 87 AEIPLVIEPGMAFGTGHHETTRLALKALARHLR----PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEA 160 (254)
T ss_dssp SSEEEECCCC-----CCSHHHHHHHHHHHHHCC----TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHH
T ss_pred CceEEEECCCccccCCCCHHHHHHHHHHHHhcC----CCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHH
Confidence 4566777887765 34555555555554432 2379999999999999999887 3499999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
|+..+++. +++.++|+ .+.+ +.++||+|++|+++. .+..+
T Consensus 161 n~~~~~~~--v~~~~~d~-----~~~~----~~~~fD~Vv~n~~~~-----------------------------~~~~~ 200 (254)
T 2nxc_A 161 NAKRNGVR--PRFLEGSL-----EAAL----PFGPFDLLVANLYAE-----------------------------LHAAL 200 (254)
T ss_dssp HHHHTTCC--CEEEESCH-----HHHG----GGCCEEEEEEECCHH-----------------------------HHHHH
T ss_pred HHHHcCCc--EEEEECCh-----hhcC----cCCCCCEEEECCcHH-----------------------------HHHHH
Confidence 99998875 89999998 4432 346899999997642 14578
Q ss_pred HHHHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 262 CVFGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
+..+.++|+|||.+++. +...+.+.+.+.+++.| |..+++..
T Consensus 201 l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~G----f~~~~~~~ 243 (254)
T 2nxc_A 201 APRYREALVPGGRALLTGILKDRAPLVREAMAGAG----FRPLEEAA 243 (254)
T ss_dssp HHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTT----CEEEEEEE
T ss_pred HHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCC----CEEEEEec
Confidence 99999999999999884 55678889999999886 66666554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-16 Score=144.82 Aligned_cols=161 Identities=18% Similarity=0.209 Sum_probs=119.1
Q ss_pred cCeEEEeCCCCc--ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVF--IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~~~--iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|.+++..+ .++..++.+ .+...+.. +.+|||+|||+|.+++. ++ +..+|+|+|+|+.+++.|++|
T Consensus 165 ~g~~f~~d~~~~~~~~~~~~er~--~i~~~~~~----~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n 235 (336)
T 2yx1_A 165 NGYRLWVDIAKVYFSPRLGGERA--RIMKKVSL----NDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKN 235 (336)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHH--HHHHHCCT----TCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEehHHhccCCccHHHHH--HHHHhcCC----CCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHH
Confidence 577888887644 355555554 44444432 37999999999999999 87 478999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.++++++++|+ .+.+ ++||+|++|||+... .++
T Consensus 236 ~~~n~l~~~v~~~~~D~-----~~~~------~~fD~Vi~dpP~~~~------------------------------~~l 274 (336)
T 2yx1_A 236 IKLNKLEHKIIPILSDV-----REVD------VKGNRVIMNLPKFAH------------------------------KFI 274 (336)
T ss_dssp HHHTTCTTTEEEEESCG-----GGCC------CCEEEEEECCTTTGG------------------------------GGH
T ss_pred HHHcCCCCcEEEEECCh-----HHhc------CCCcEEEECCcHhHH------------------------------HHH
Confidence 99999877899999999 4332 689999999997531 467
Q ss_pred HHHhccCccCcEEEEE-EcCCCHHHHHHHHHHc-CCCCceeeEEEecCCCCCCeEEEE
Q psy7093 263 VFGSNYLKPNGSIFLE-TNHDHLDKIKEWLGIC-GHHMKLKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~-~~~~~~~~v~~~~D~~g~~R~~~~ 318 (322)
..+.++|+|||++++. +... .....+.+.+. ++ ....+...+|.+...+.+.+
T Consensus 275 ~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~~~~~~--~i~~~~~v~~~~p~~~~~~~ 329 (336)
T 2yx1_A 275 DKALDIVEEGGVIHYYTIGKD-FDKAIKLFEKKCDC--EVLEKRIVKSYAPREYILAL 329 (336)
T ss_dssp HHHHHHEEEEEEEEEEEEESS-SHHHHHHHHHHSEE--EEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHcCCCCEEEEEEeecC-chHHHHHHHHhcCC--cEEEEEEEeccCCCCCEEEE
Confidence 7788999999988774 3344 55566666665 31 12245677777776666543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=133.78 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=113.2
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
++|.+...++.+++.+... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++.++++++++
T Consensus 17 ~~~~~~~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~ 93 (256)
T 1nkv_A 17 HNPFTEEKYATLGRVLRMK--PGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 93 (256)
T ss_dssp SSSCCHHHHHHHHHHTCCC--TTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred cCCCCHHHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEC
Confidence 4667778888888887644 33799999999999999999986 67999999999999999999999888778999999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ .+ ++ ..++||+|+++.......+ ...+++++.++|||||.+++
T Consensus 94 d~-----~~-~~---~~~~fD~V~~~~~~~~~~~--------------------------~~~~l~~~~r~LkpgG~l~~ 138 (256)
T 1nkv_A 94 DA-----AG-YV---ANEKCDVAACVGATWIAGG--------------------------FAGAEELLAQSLKPGGIMLI 138 (256)
T ss_dssp CC-----TT-CC---CSSCEEEEEEESCGGGTSS--------------------------SHHHHHHHTTSEEEEEEEEE
T ss_pred Ch-----Hh-CC---cCCCCCEEEECCChHhcCC--------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 98 33 22 2568999999654432221 24789999999999999988
Q ss_pred EEcC----------------------CCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 278 ETNH----------------------DHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 278 e~~~----------------------~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
.... .....+.+++++.| |..+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~ 184 (256)
T 1nkv_A 139 GEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLG----YDVVEM 184 (256)
T ss_dssp EEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTT----BCCCEE
T ss_pred ecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCC----CeeEEE
Confidence 5421 12356778888876 565544
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=134.73 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
|........++..+... .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 28 ~~~~~~~~~~l~~l~~~-~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 28 PGSPEVTLKALSFIDNL-TEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp SCCHHHHHHHHTTCCCC-CTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCHHHHHHHHHhcccC-CCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh
Confidence 44556666677766522 13479999999999999999998 77899999999999999999999999988899999998
Q ss_pred CCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
. .++ ++.++||+|+++.++... + ...+++.+.++|+|||++++..
T Consensus 106 -----~-~~~--~~~~~fD~i~~~~~~~~~-~--------------------------~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 106 -----D-DLP--FRNEELDLIWSEGAIYNI-G--------------------------FERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp -----T-SCC--CCTTCEEEEEESSCGGGT-C--------------------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----h-hCC--CCCCCEEEEEEcCCceec-C--------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence 2 222 246789999998776443 1 3478999999999999998864
Q ss_pred cC---------------------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 280 NH---------------------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 280 ~~---------------------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
.. .....+.+++++.| |..+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~v~~~ 194 (267)
T 3kkz_A 151 CSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAG----YLPVATF 194 (267)
T ss_dssp EEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTT----EEEEEEE
T ss_pred eeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCC----CEEEEEE
Confidence 21 12456777788875 7766654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-15 Score=132.18 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=113.2
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
|........+++.+.... ++.+|||+|||+|.++..+++..+. +|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 28 ~~~~~~~~~~l~~l~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 105 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELT-DDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM 105 (257)
T ss_dssp SCCHHHHHHHHTTSCCCC-TTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCHHHHHHHHHHHhcCC-CCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 555667777777764322 3479999999999999999999764 99999999999999999999999988899999998
Q ss_pred CCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
. .++ +..++||+|+++..+... + ...+++.+.++|+|||++++..
T Consensus 106 -----~-~~~--~~~~~fD~v~~~~~l~~~-~--------------------------~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 106 -----D-NLP--FQNEELDLIWSEGAIYNI-G--------------------------FERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp -----T-SCS--SCTTCEEEEEEESCSCCC-C--------------------------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----h-hCC--CCCCCEEEEEecChHhhc-C--------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 2 222 246789999998654432 1 3478999999999999998865
Q ss_pred cC---------------------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 280 NH---------------------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 280 ~~---------------------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
.. .....+.+++++.| |..+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~v~~~ 194 (257)
T 3f4k_A 151 ASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAG----YTPTAHF 194 (257)
T ss_dssp EEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTT----EEEEEEE
T ss_pred eeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCC----CeEEEEE
Confidence 21 13456777888876 6766643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-16 Score=138.28 Aligned_cols=130 Identities=16% Similarity=0.104 Sum_probs=103.4
Q ss_pred cCeEEEeCCCCc--ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVF--IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~~~--iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|.++++.+ .++..++.+. ++..+. ++.+|||+|||+|.+++.+|+..+..+|+|+|+|+.+++.|++|
T Consensus 89 ~g~~f~~~~~~~f~~~~~~~e~~~--~~~~~~----~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n 162 (272)
T 3a27_A 89 YGCLFKLDVAKIMWSQGNIEERKR--MAFISN----ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCEN 162 (272)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHH--HHTSCC----TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHH
T ss_pred CCEEEEEechhEEECCCchHHHHH--HHHhcC----CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 689999999874 4666555543 222222 23799999999999999999997778999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.+ +.++++|+ .+. + ..++||+|++|||+. +..++
T Consensus 163 ~~~n~l~~-~~~~~~d~-----~~~-~---~~~~~D~Vi~d~p~~------------------------------~~~~l 202 (272)
T 3a27_A 163 IKLNKLNN-VIPILADN-----RDV-E---LKDVADRVIMGYVHK------------------------------THKFL 202 (272)
T ss_dssp HHHTTCSS-EEEEESCG-----GGC-C---CTTCEEEEEECCCSS------------------------------GGGGH
T ss_pred HHHcCCCC-EEEEECCh-----HHc-C---ccCCceEEEECCccc------------------------------HHHHH
Confidence 99999865 88999999 433 2 146899999999971 12567
Q ss_pred HHHhccCccCcEEEEEEc
Q psy7093 263 VFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~ 280 (322)
..+.+.|+|||++++.+.
T Consensus 203 ~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 203 DKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp HHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHcCCCCEEEEEEc
Confidence 788899999999988654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=156.82 Aligned_cols=163 Identities=14% Similarity=0.154 Sum_probs=117.8
Q ss_pred cCeEEEeCCCCccc---CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIP---RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 105 ~~~~~~v~~~~~ip---rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.|..|.+++....- -.+.......+.+.. ++.+|||+|||||.+++.++.. +..+|+++|+|+.+++.|++
T Consensus 507 ~g~~~~v~~~~~~~tG~f~d~r~~r~~l~~~~-----~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~ 580 (703)
T 3v97_A 507 YNAHLWVNLTDYLDTGLFLDHRIARRMLGQMS-----KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAER 580 (703)
T ss_dssp TTEEEEECSSSSSSCSCCGGGHHHHHHHHHHC-----TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCcccHHHHHHHHHHhc-----CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Confidence 57788887653210 123333333333322 2379999999999999999985 44579999999999999999
Q ss_pred HHHHcCCC-CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHH
Q psy7093 182 NAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260 (322)
Q Consensus 182 n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~ 260 (322)
|++.+++. ++++++++|+ ++.++. ..++||+|++||||........ .-.++...|..
T Consensus 581 N~~~ngl~~~~v~~i~~D~-----~~~l~~--~~~~fD~Ii~DPP~f~~~~~~~---------------~~~~~~~~~~~ 638 (703)
T 3v97_A 581 NLRLNGLTGRAHRLIQADC-----LAWLRE--ANEQFDLIFIDPPTFSNSKRME---------------DAFDVQRDHLA 638 (703)
T ss_dssp HHHHTTCCSTTEEEEESCH-----HHHHHH--CCCCEEEEEECCCSBC----------------------CCBHHHHHHH
T ss_pred HHHHcCCCccceEEEecCH-----HHHHHh--cCCCccEEEECCccccCCccch---------------hHHHHHHHHHH
Confidence 99999987 5799999999 554432 3468999999999976432110 01245567899
Q ss_pred HHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 261 ICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 261 ~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
++..+.++|+|||+++++++..+.....+.+.+.+
T Consensus 639 ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g 673 (703)
T 3v97_A 639 LMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLG 673 (703)
T ss_dssp HHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTT
T ss_pred HHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcC
Confidence 99999999999999999998755444466677765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=146.50 Aligned_cols=160 Identities=16% Similarity=0.222 Sum_probs=113.1
Q ss_pred CcccCchhHHHHH---HHHHHhccC--------CCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHH
Q psy7093 115 VFIPRSETEELID---IITDKLESS--------NHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 115 ~~iprp~te~lv~---~i~~~~~~~--------~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n 182 (322)
..+|+++++.+.+ .+++.+... ..++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|++|
T Consensus 48 ~~~p~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 127 (383)
T 4fsd_A 48 AAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKY 127 (383)
T ss_dssp --CCHHHHHHHHTSCHHHHHHCCSCCCCCSCGGGGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhHHHHHHhcCCCCccccccCCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3678888888765 444443100 1134799999999999999999986 678999999999999999999
Q ss_pred HHHc-----C-C-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh
Q psy7093 183 AVMH-----N-V-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL 255 (322)
Q Consensus 183 ~~~~-----~-l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl 255 (322)
+..+ | . ..+++++++|+.+..... ...++.++||+|++|..+....+
T Consensus 128 ~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~--~~~~~~~~fD~V~~~~~l~~~~d------------------------ 181 (383)
T 4fsd_A 128 VEYHAEKFFGSPSRSNVRFLKGFIENLATAE--PEGVPDSSVDIVISNCVCNLSTN------------------------ 181 (383)
T ss_dssp HHHHHHHHHSSTTCCCEEEEESCTTCGGGCB--SCCCCTTCEEEEEEESCGGGCSC------------------------
T ss_pred HHHhhhhcccccCCCceEEEEccHHHhhhcc--cCCCCCCCEEEEEEccchhcCCC------------------------
Confidence 8765 3 2 246999999982210000 00235678999999977654332
Q ss_pred HHHHHHHHHHhccCccCcEEEEEE-cC----------------------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 256 NIIKPICVFGSNYLKPNGSIFLET-NH----------------------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 256 ~~~~~~l~~~~~~Lk~gG~l~~e~-~~----------------------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
...+++++.++|||||++++.. .. ...+.+.+++++.| |..+++.
T Consensus 182 --~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG----F~~v~~~ 249 (383)
T 4fsd_A 182 --KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAG----FRDVRLV 249 (383)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTT----CCCEEEE
T ss_pred --HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCC----CceEEEE
Confidence 3479999999999999998853 21 22377888999887 5555443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=134.92 Aligned_cols=123 Identities=14% Similarity=0.229 Sum_probs=99.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEE
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVF 195 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~ 195 (322)
+.|++..++..+........ ..+|||+|||+|..++.+++.+| +.+|+++|+|+.+++.|++|++..++. ++++++
T Consensus 37 i~~~~~~~l~~l~~~~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~ 114 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTNGNG--STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL 114 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCTT--CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCC--CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 36778888888776654321 25999999999999999999875 789999999999999999999999987 789999
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
++|+ .+.++. +..++||+|+++++... +..+++.+.++|+|||++
T Consensus 115 ~gda-----~~~l~~-~~~~~fD~V~~d~~~~~-----------------------------~~~~l~~~~~~LkpGG~l 159 (221)
T 3dr5_A 115 LSRP-----LDVMSR-LANDSYQLVFGQVSPMD-----------------------------LKALVDAAWPLLRRGGAL 159 (221)
T ss_dssp CSCH-----HHHGGG-SCTTCEEEEEECCCTTT-----------------------------HHHHHHHHHHHEEEEEEE
T ss_pred EcCH-----HHHHHH-hcCCCcCeEEEcCcHHH-----------------------------HHHHHHHHHHHcCCCcEE
Confidence 9998 544432 23578999999864211 457888999999999999
Q ss_pred EE
Q psy7093 276 FL 277 (322)
Q Consensus 276 ~~ 277 (322)
++
T Consensus 160 v~ 161 (221)
T 3dr5_A 160 VL 161 (221)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=143.86 Aligned_cols=140 Identities=21% Similarity=0.444 Sum_probs=108.7
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
+..+...+++|. ++..+...+.+++.+.... +.+|||+|||+|.++..+++..|..+|+++|+|+.+++.|++|+..
T Consensus 166 ~~~~~~~~gvf~-~~~~d~~~~~ll~~l~~~~--~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~ 242 (343)
T 2pjd_A 166 GLTVKTLPGVFS-RDGLDVGSQLLLSTLTPHT--KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA 242 (343)
T ss_dssp TEEEEECTTCTT-SSSCCHHHHHHHHHSCTTC--CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH
T ss_pred ceEEEecCCccC-CCCCcHHHHHHHHhcCcCC--CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 566778889887 3444445556666664332 3689999999999999999998888999999999999999999998
Q ss_pred cCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHH
Q psy7093 186 HNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG 265 (322)
Q Consensus 186 ~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~ 265 (322)
+++. ++++.+|+ ++. ..++||+|++||||+.... ...+....+++.+
T Consensus 243 ~~~~--~~~~~~d~-----~~~-----~~~~fD~Iv~~~~~~~g~~---------------------~~~~~~~~~l~~~ 289 (343)
T 2pjd_A 243 NGVE--GEVFASNV-----FSE-----VKGRFDMIISNPPFHDGMQ---------------------TSLDAAQTLIRGA 289 (343)
T ss_dssp TTCC--CEEEECST-----TTT-----CCSCEEEEEECCCCCSSSH---------------------HHHHHHHHHHHHH
T ss_pred hCCC--CEEEEccc-----ccc-----ccCCeeEEEECCCcccCcc---------------------CCHHHHHHHHHHH
Confidence 8865 57788998 432 2468999999999974211 0123357899999
Q ss_pred hccCccCcEEEEEEcC
Q psy7093 266 SNYLKPNGSIFLETNH 281 (322)
Q Consensus 266 ~~~Lk~gG~l~~e~~~ 281 (322)
.++|+|||.+++....
T Consensus 290 ~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 290 VRHLNSGGELRIVANA 305 (343)
T ss_dssp GGGEEEEEEEEEEEET
T ss_pred HHhCCCCcEEEEEEcC
Confidence 9999999999987654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=125.02 Aligned_cols=135 Identities=13% Similarity=0.216 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
.+.+...+++.+... ++.+|||+|||+|.++..++..+|+.+|+++|+|+.+++.|++|+...++..++ ++++|.
T Consensus 10 ~~~~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~-- 84 (178)
T 3hm2_A 10 KQHVRALAISALAPK--PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGA-- 84 (178)
T ss_dssp HHHHHHHHHHHHCCC--TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCT--
T ss_pred HHHHHHHHHHHhccc--CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecch--
Confidence 345556666666543 237999999999999999999988999999999999999999999998887678 888988
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+.++. ..++||+|+++.++.. ..+++.+.++|+|||.+++....
T Consensus 85 ---~~~~~~--~~~~~D~i~~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 85 ---PRAFDD--VPDNPDVIFIGGGLTA------------------------------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp ---TGGGGG--CCSCCSEEEECC-TTC------------------------------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred ---Hhhhhc--cCCCCCEEEECCcccH------------------------------HHHHHHHHHhcCCCCEEEEEeec
Confidence 444431 1268999999876543 15888899999999999986543
Q ss_pred -CCHHHHHHHHHHcCC
Q psy7093 282 -DHLDKIKEWLGICGH 296 (322)
Q Consensus 282 -~~~~~~~~~l~~~~~ 296 (322)
.....+.+++++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~ 145 (178)
T 3hm2_A 130 VESEQMLWALRKQFGG 145 (178)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHcCC
Confidence 445667778887763
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=126.19 Aligned_cols=139 Identities=22% Similarity=0.279 Sum_probs=112.0
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
+|++..+.+...+++.+.... +.+|||+|||+|.++..++... .+|+++|+|+.+++.|++|+...++.+++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (192)
T 1l3i_A 13 VPGPTAMEVRCLIMCLAEPGK--NDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88 (192)
T ss_dssp SCCCCCHHHHHHHHHHHCCCT--TCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCCCChHHHHHHHHHhcCCCC--CCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 456777888888888776543 3799999999999999999885 899999999999999999999988866799999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+ .+.++ ..++||+|++++++.. +..+++.+.++|+|||.++
T Consensus 89 ~d~-----~~~~~---~~~~~D~v~~~~~~~~-----------------------------~~~~l~~~~~~l~~gG~l~ 131 (192)
T 1l3i_A 89 GDA-----PEALC---KIPDIDIAVVGGSGGE-----------------------------LQEILRIIKDKLKPGGRII 131 (192)
T ss_dssp SCH-----HHHHT---TSCCEEEEEESCCTTC-----------------------------HHHHHHHHHHTEEEEEEEE
T ss_pred cCH-----HHhcc---cCCCCCEEEECCchHH-----------------------------HHHHHHHHHHhcCCCcEEE
Confidence 998 44332 1258999999876521 3478999999999999999
Q ss_pred EEEcC-CCHHHHHHHHHHcCC
Q psy7093 277 LETNH-DHLDKIKEWLGICGH 296 (322)
Q Consensus 277 ~e~~~-~~~~~~~~~l~~~~~ 296 (322)
+.... .....+.+++++.|+
T Consensus 132 ~~~~~~~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 132 VTAILLETKFEAMECLRDLGF 152 (192)
T ss_dssp EEECBHHHHHHHHHHHHHTTC
T ss_pred EEecCcchHHHHHHHHHHCCC
Confidence 87653 445677788888874
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-15 Score=129.24 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=115.8
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
+.+++.+... ++.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.|++++...++. ++++.++|+ .
T Consensus 27 ~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~-----~ 98 (219)
T 3dh0_A 27 EKVLKEFGLK--EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEE-----N 98 (219)
T ss_dssp HHHHHHHTCC--TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBT-----T
T ss_pred HHHHHHhCCC--CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeccc-----c
Confidence 3444444433 23799999999999999999986 6689999999999999999999988876 599999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-----
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN----- 280 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~----- 280 (322)
+ ++ +..++||+|+++..+....+ ...+++.+.++|+|||.+++...
T Consensus 99 ~-~~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 149 (219)
T 3dh0_A 99 K-IP--LPDNTVDFIFMAFTFHELSE--------------------------PLKFLEELKRVAKPFAYLAIIDWKKEER 149 (219)
T ss_dssp B-CS--SCSSCEEEEEEESCGGGCSS--------------------------HHHHHHHHHHHEEEEEEEEEEEECSSCC
T ss_pred c-CC--CCCCCeeEEEeehhhhhcCC--------------------------HHHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 2 22 34678999999865543221 35789999999999999988542
Q ss_pred --------CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 281 --------HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 281 --------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
....+.+.+++++.| |..+++. +..+...+++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~G----f~~~~~~-~~~~~~~~~~~~k 192 (219)
T 3dh0_A 150 DKGPPPEEVYSEWEVGLILEDAG----IRVGRVV-EVGKYCFGVYAMI 192 (219)
T ss_dssp SSSCCGGGSCCHHHHHHHHHHTT----CEEEEEE-EETTTEEEEEEEC
T ss_pred ccCCchhcccCHHHHHHHHHHCC----CEEEEEE-eeCCceEEEEEEe
Confidence 123688999999986 6766654 4556677777665
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=141.17 Aligned_cols=130 Identities=16% Similarity=0.238 Sum_probs=103.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+| |+|.+++.++...+..+|+++|+|+.+++.|++|+..+++. +++++++|+ .+.++.. ..++||+
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~-----~~~l~~~-~~~~fD~ 244 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDL-----RKPLPDY-ALHKFDT 244 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCT-----TSCCCTT-TSSCBSE
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChh-----hhhchhh-ccCCccE
Confidence 47999999 99999999999866689999999999999999999999886 699999999 5434311 2358999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc-EEEEEEcC--CCH---HHHHHHHH-
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG-SIFLETNH--DHL---DKIKEWLG- 292 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG-~l~~e~~~--~~~---~~~~~~l~- 292 (322)
|++||||... + ...+++.+.+.|+||| .+++++.. ... ..+.+.+.
T Consensus 245 Vi~~~p~~~~------------------------~---~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (373)
T 2qm3_A 245 FITDPPETLE------------------------A---IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLN 297 (373)
T ss_dssp EEECCCSSHH------------------------H---HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHH
T ss_pred EEECCCCchH------------------------H---HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHH
Confidence 9999998642 1 2588999999999999 56888876 666 66777776
Q ss_pred HcCCCCceeeEEEecC
Q psy7093 293 ICGHHMKLKLVENYKD 308 (322)
Q Consensus 293 ~~~~~~~~~~v~~~~D 308 (322)
..+ |....+.+|
T Consensus 298 ~~g----~~~~~~~~~ 309 (373)
T 2qm3_A 298 EFN----VVITDIIRN 309 (373)
T ss_dssp TSC----CEEEEEEEE
T ss_pred hcC----cchhhhhhh
Confidence 554 444444444
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=150.10 Aligned_cols=150 Identities=19% Similarity=0.291 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+.+++.+++.+... ++.+|||+|||+|.+++.+++.+ +..+++|+|+++.+++.| .+++++++|+
T Consensus 25 ~~l~~~~~~~~~~~--~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~-- 90 (421)
T 2ih2_A 25 PEVVDFMVSLAEAP--RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADF-- 90 (421)
T ss_dssp HHHHHHHHHHCCCC--TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCG--
T ss_pred HHHHHHHHHhhccC--CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCCh--
Confidence 34556666665532 23699999999999999999876 568999999999998777 3589999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCC----CChhhh-cccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPK----LEPEIA-LYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~----l~~~v~-~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+... ..++||+|++||||........ +..+.+ .+++..+...| ..+.+..+++.+.++|+|||.++
T Consensus 91 ---~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fl~~~~~~Lk~~G~~~ 161 (421)
T 2ih2_A 91 ---LLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKG--KYNLYGAFLEKAVRLLKPGGVLV 161 (421)
T ss_dssp ---GGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCT--TCCHHHHHHHHHHHHEEEEEEEE
T ss_pred ---hhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccC--CccHHHHHHHHHHHHhCCCCEEE
Confidence 4432 2468999999999997665322 223332 23443333333 24678899999999999999999
Q ss_pred EEEcCC-----CHHHHHHHHHHcC
Q psy7093 277 LETNHD-----HLDKIKEWLGICG 295 (322)
Q Consensus 277 ~e~~~~-----~~~~~~~~l~~~~ 295 (322)
+.++.. ....+++++.+.+
T Consensus 162 ~i~p~~~l~~~~~~~lr~~l~~~~ 185 (421)
T 2ih2_A 162 FVVPATWLVLEDFALLREFLAREG 185 (421)
T ss_dssp EEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred EEEChHHhcCccHHHHHHHHHhcC
Confidence 988764 5677888888775
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.9e-15 Score=126.84 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=102.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+...+++.+... ++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|++.+++.++++++++|+
T Consensus 42 ~~~~~~l~~l~~~--~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---- 113 (204)
T 3njr_A 42 PMRALTLAALAPR--RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---- 113 (204)
T ss_dssp HHHHHHHHHHCCC--TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT----
T ss_pred HHHHHHHHhcCCC--CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch----
Confidence 3444555555544 2379999999999999999998 7899999999999999999999999876799999999
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-C
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-D 282 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~ 282 (322)
.+.+. ....||+|++++.. + .. +++.+.++|+|||.+++.... .
T Consensus 114 -~~~~~---~~~~~D~v~~~~~~----~--------------------------~~-~l~~~~~~LkpgG~lv~~~~~~~ 158 (204)
T 3njr_A 114 -PAALA---DLPLPEAVFIGGGG----S--------------------------QA-LYDRLWEWLAPGTRIVANAVTLE 158 (204)
T ss_dssp -TGGGT---TSCCCSEEEECSCC----C--------------------------HH-HHHHHHHHSCTTCEEEEEECSHH
T ss_pred -hhhcc---cCCCCCEEEECCcc----c--------------------------HH-HHHHHHHhcCCCcEEEEEecCcc
Confidence 44332 23579999997522 0 24 888999999999999997653 5
Q ss_pred CHHHHHHHHHHcCC
Q psy7093 283 HLDKIKEWLGICGH 296 (322)
Q Consensus 283 ~~~~~~~~l~~~~~ 296 (322)
+...+.+++++.++
T Consensus 159 ~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 159 SETLLTQLHARHGG 172 (204)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHhCCC
Confidence 56777888888763
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=132.32 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=104.4
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKH-FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~-~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
...++..+... ++.+|||+|||+|.++..+++. .|..+|+++|+|+.+++.|++|++..++.++++++++|+
T Consensus 82 ~~~i~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~----- 154 (255)
T 3mb5_A 82 AALIVAYAGIS--PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI----- 154 (255)
T ss_dssp HHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG-----
T ss_pred HHHHHHhhCCC--CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch-----
Confidence 34555555443 3479999999999999999998 678999999999999999999999999888899999999
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCC
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDH 283 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~ 283 (322)
.+.+ +.++||+|++|+|.. ..+++.+.++|+|||.+++... ..+
T Consensus 155 ~~~~----~~~~~D~v~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~ 199 (255)
T 3mb5_A 155 YEGI----EEENVDHVILDLPQP-------------------------------ERVVEHAAKALKPGGFFVAYTPCSNQ 199 (255)
T ss_dssp GGCC----CCCSEEEEEECSSCG-------------------------------GGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred hhcc----CCCCcCEEEECCCCH-------------------------------HHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 4432 456899999998732 1477888999999999988664 356
Q ss_pred HHHHHHHHHHcC
Q psy7093 284 LDKIKEWLGICG 295 (322)
Q Consensus 284 ~~~~~~~l~~~~ 295 (322)
...+.+.+++.+
T Consensus 200 ~~~~~~~l~~~g 211 (255)
T 3mb5_A 200 VMRLHEKLREFK 211 (255)
T ss_dssp HHHHHHHHHHTG
T ss_pred HHHHHHHHHHcC
Confidence 677888888875
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.4e-15 Score=122.62 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=106.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
++.++.+.+.+++.+.... +.+|||+|||+|.++..++. +..+++|+|+|+.+++.|++|+..+++. +++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d 91 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLNLNK--DDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGR 91 (183)
T ss_dssp CCCCHHHHHHHHHHHCCCT--TCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESC
T ss_pred CcCHHHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECC
Confidence 3566778888888776543 37999999999999999998 6889999999999999999999998874 59999999
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+ .+.+ +.++||+|++++| .. ...+++.+.++ |||.+++.
T Consensus 92 ~-----~~~~----~~~~~D~i~~~~~----~~--------------------------~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 92 A-----EDVL----DKLEFNKAFIGGT----KN--------------------------IEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp H-----HHHG----GGCCCSEEEECSC----SC--------------------------HHHHHHHHHHT--TCCEEEEE
T ss_pred c-----cccc----cCCCCcEEEECCc----cc--------------------------HHHHHHHHhhC--CCCEEEEE
Confidence 8 4433 3468999999987 11 34677777777 99999987
Q ss_pred Ec-CCCHHHHHHHHHHcCC
Q psy7093 279 TN-HDHLDKIKEWLGICGH 296 (322)
Q Consensus 279 ~~-~~~~~~~~~~l~~~~~ 296 (322)
.. ..+...+.+.++++|+
T Consensus 131 ~~~~~~~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 131 TIVLENAAKIINEFESRGY 149 (183)
T ss_dssp ESCHHHHHHHHHHHHHTTC
T ss_pred ecccccHHHHHHHHHHcCC
Confidence 63 4456678888888874
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-15 Score=139.88 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=89.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.+++.+|.. ++.|+++|+|+.+++.|++|++.+++.+ .+.++|+ ++.+.. . .+.||+
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~-----~~~l~~-~-~~~fD~ 283 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEA-----LPTLRG-L-EGPFHH 283 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCH-----HHHHHT-C-CCCEEE
T ss_pred CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccH-----HHHHHH-h-cCCCCE
Confidence 379999999999999999997 5669999999999999999999999874 4568998 554322 1 334999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|++|||+...... .+ .++...|..++..+.++|+|||++++..+.
T Consensus 284 Ii~dpP~f~~~~~-----~~------------~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 284 VLLDPPTLVKRPE-----EL------------PAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp EEECCCCCCSSGG-----GH------------HHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEECCCcCCCCHH-----HH------------HHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999998654321 11 124456889999999999999999865544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=136.74 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=108.5
Q ss_pred ecCeEEEeCCC-----CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHH
Q psy7093 104 FRDLTLKMTPP-----VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178 (322)
Q Consensus 104 f~~~~~~v~~~-----~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~ 178 (322)
..|..|.+++. .|+. +.......+.+. . ++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.
T Consensus 187 ~~g~~f~v~~~~~~~tgff~--~~~~~~~~l~~~-~----~~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~~ 258 (396)
T 3c0k_A 187 EHGMKLLVDIQHGHKTGYYL--DQRDSRLATRRY-V----ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDI 258 (396)
T ss_dssp ETTEEEEECTTTSSTTSSCG--GGHHHHHHHHHH-C----TTCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHHH
T ss_pred ECCEEEEEeccccccCCcCc--CHHHHHHHHHHh-h----CCCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHHH
Confidence 35788888875 4442 222222333333 2 2379999999999999999987 35699999999999999
Q ss_pred HHHHHHHcCC-CCcEEEEEccCCCcccccccCcCc-CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhH
Q psy7093 179 TEQNAVMHNV-ANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256 (322)
Q Consensus 179 A~~n~~~~~l-~~~i~~~~~D~~~~~~~~~l~~~~-~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~ 256 (322)
|++|++.+++ .++++++++|+ .+.++... ...+||+|++||||....... +. ++..
T Consensus 259 a~~n~~~ngl~~~~v~~~~~D~-----~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~--------------~~---~~~~ 316 (396)
T 3c0k_A 259 ARQNVELNKLDLSKAEFVRDDV-----FKLLRTYRDRGEKFDVIVMDPPKFVENKSQ--------------LM---GACR 316 (396)
T ss_dssp HHHHHHHTTCCGGGEEEEESCH-----HHHHHHHHHTTCCEEEEEECCSSTTTCSSS--------------SS---CCCT
T ss_pred HHHHHHHcCCCccceEEEECCH-----HHHHHHHHhcCCCCCEEEECCCCCCCChhH--------------HH---HHHH
Confidence 9999999998 65799999998 44332100 135899999999987643211 01 1223
Q ss_pred HHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 257 IIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 257 ~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
.+..++..+.+.|+|||++++.+....
T Consensus 317 ~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 317 GYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 467899999999999999999876543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=131.67 Aligned_cols=146 Identities=7% Similarity=0.112 Sum_probs=104.6
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..++..++.... +.+|||+|||+|..++.+++.++ +.+|+++|+++.+++.|++|++..++.++++++++
T Consensus 43 ~~~~~~~l~~l~~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 117 (221)
T 3u81_A 43 GDAKGQIMDAVIREYS-----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG 117 (221)
T ss_dssp CHHHHHHHHHHHHHHC-----CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred CHHHHHHHHHHHHhcC-----CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEEC
Confidence 4566666666655432 27999999999999999999764 78999999999999999999999998888999999
Q ss_pred cCCCcccccccCcC---cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPD---LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~---~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++.. ...++||+|+++.+... ..-+..+++.+ ++|+|||+
T Consensus 118 d~-----~~~l~~~~~~~~~~~fD~V~~d~~~~~--------------------------~~~~~~~~~~~-~~LkpgG~ 165 (221)
T 3u81_A 118 AS-----QDLIPQLKKKYDVDTLDMVFLDHWKDR--------------------------YLPDTLLLEKC-GLLRKGTV 165 (221)
T ss_dssp CH-----HHHGGGTTTTSCCCCCSEEEECSCGGG--------------------------HHHHHHHHHHT-TCCCTTCE
T ss_pred CH-----HHHHHHHHHhcCCCceEEEEEcCCccc--------------------------chHHHHHHHhc-cccCCCeE
Confidence 97 4433221 11268999999754221 01123566666 99999999
Q ss_pred EEEEEc-CCCHHHHHHHHHHcCCCCceeeEE
Q psy7093 275 IFLETN-HDHLDKIKEWLGICGHHMKLKLVE 304 (322)
Q Consensus 275 l~~e~~-~~~~~~~~~~l~~~~~~~~~~~v~ 304 (322)
+++... ........+.+..+. +|....
T Consensus 166 lv~~~~~~~~~~~~~~~l~~~~---~~~~~~ 193 (221)
T 3u81_A 166 LLADNVIVPGTPDFLAYVRGSS---SFECTH 193 (221)
T ss_dssp EEESCCCCCCCHHHHHHHHHCT---TEEEEE
T ss_pred EEEeCCCCcchHHHHHHHhhCC---CceEEE
Confidence 988532 223345566666664 355443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=130.66 Aligned_cols=119 Identities=14% Similarity=0.261 Sum_probs=95.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
.++...++..++.... +.+|||+|||+|..++.++...|+.+|+++|+++.+++.|++|++..++.++++++++|
T Consensus 56 ~~~~~~~l~~~~~~~~-----~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMNN-----VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN 130 (232)
T ss_dssp CHHHHHHHHHHHHHHT-----CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred CHHHHHHHHHHHhhcC-----CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 4555555555544332 27999999999999999999878899999999999999999999999988789999999
Q ss_pred CCCcccccccC-cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 199 IDSKGQVKNLQ-PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 199 ~~~~~~~~~l~-~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+ .+.++ . ..++||+|+++.+... +..+++.+.++|+|||++++
T Consensus 131 ~-----~~~~~~~--~~~~fD~V~~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 131 A-----LEQFENV--NDKVYDMIFIDAAKAQ-----------------------------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp G-----GGCHHHH--TTSCEEEEEEETTSSS-----------------------------HHHHHHHHGGGEEEEEEEEE
T ss_pred H-----HHHHHhh--ccCCccEEEEcCcHHH-----------------------------HHHHHHHHHHhcCCCeEEEE
Confidence 8 44432 1 1578999999864211 55789999999999999988
Q ss_pred E
Q psy7093 278 E 278 (322)
Q Consensus 278 e 278 (322)
.
T Consensus 175 d 175 (232)
T 3ntv_A 175 D 175 (232)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=133.85 Aligned_cols=143 Identities=18% Similarity=0.092 Sum_probs=103.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..+..++..++ ..+|+|+|+|+.+++.+++|++++++.+ ++++++|+ ... .. ..++||
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~-----~~~-~~--~~~~fD 189 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSS-----LHI-GE--LNVEFD 189 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCG-----GGG-GG--GCCCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECCh-----hhc-cc--ccccCC
Confidence 37999999999999999999864 4799999999999999999999999864 99999998 322 11 245899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHHHHHc
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEWLGIC 294 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~l~~~ 294 (322)
+|++|||+.....+...+.....+.+. .........+.+++.+.++|||||.+++.++. .....+..+++++
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~----~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~ 265 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMD----DIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNF 265 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHH----HHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHS
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHH----HHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcC
Confidence 999999987655443221111111110 00112344579999999999999999997654 3355677777776
Q ss_pred C
Q psy7093 295 G 295 (322)
Q Consensus 295 ~ 295 (322)
+
T Consensus 266 ~ 266 (315)
T 1ixk_A 266 D 266 (315)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=137.01 Aligned_cols=182 Identities=12% Similarity=0.115 Sum_probs=116.3
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHH--hccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDK--LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~--~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+|..+.++..+.+++++.-...+.+... +... .+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++
T Consensus 55 ~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~~--~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~ 132 (296)
T 1inl_A 55 DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHP--NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARK 132 (296)
T ss_dssp TTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSS--SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEECCEEeecccchhHHHHHHhHHHHhcCC--CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 35678888866666666532222222211 1111 2379999999999999999998778899999999999999999
Q ss_pred HHHH--cCC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH
Q psy7093 182 NAVM--HNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258 (322)
Q Consensus 182 n~~~--~~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~ 258 (322)
|+.. .++ ..+++++.+|+ .+.+.. ..++||+|++|+|..... |...++ .
T Consensus 133 ~~~~~~~~~~~~~v~~~~~D~-----~~~l~~--~~~~fD~Ii~d~~~~~~~-------------~~~~l~--------~ 184 (296)
T 1inl_A 133 YLKQTSCGFDDPRAEIVIANG-----AEYVRK--FKNEFDVIIIDSTDPTAG-------------QGGHLF--------T 184 (296)
T ss_dssp HCHHHHGGGGCTTEEEEESCH-----HHHGGG--CSSCEEEEEEEC-----------------------CC--------S
T ss_pred HhHhhccccCCCceEEEECcH-----HHHHhh--CCCCceEEEEcCCCcccC-------------chhhhh--------H
Confidence 9754 233 35799999998 443322 246899999998742111 111111 3
Q ss_pred HHHHHHHhccCccCcEEEEEEcC--CCHHHH---HHHHHHcCCCCceeeEEEec---CC--CCCCeEEEEEE
Q psy7093 259 KPICVFGSNYLKPNGSIFLETNH--DHLDKI---KEWLGICGHHMKLKLVENYK---DF--NNKDRFVELKL 320 (322)
Q Consensus 259 ~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~---~~~l~~~~~~~~~~~v~~~~---D~--~g~~R~~~~~~ 320 (322)
..+++.+.++|+|||+++++++. .+.... .+.+++. |..+..+. .. .|..-|+.+.|
T Consensus 185 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-----F~~v~~~~~~vp~~p~g~~~f~~as~ 251 (296)
T 1inl_A 185 EEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-----FPITRVYLGFMTTYPSGMWSYTFASK 251 (296)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-----CSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred HHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-----CCceEEEEeecCccCCCceEEEEecC
Confidence 57888999999999999998765 333333 3344443 33444332 22 35566766664
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=127.62 Aligned_cols=120 Identities=15% Similarity=0.264 Sum_probs=94.7
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
+....++..+..... +.+|||+|||+|..++.++..+| +.+|+++|+|+.+++.|++|+...++.++++++.+|
T Consensus 49 ~~~~~~l~~l~~~~~-----~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d 123 (248)
T 3tfw_A 49 ANQGQFLALLVRLTQ-----AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123 (248)
T ss_dssp HHHHHHHHHHHHHHT-----CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHHHHHhhcC-----CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 445555555544332 27999999999999999999988 789999999999999999999999988889999999
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+ .+.++.....++||+|+++.+.. .+..+++.+.++|+|||++++.
T Consensus 124 ~-----~~~l~~~~~~~~fD~V~~d~~~~-----------------------------~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 124 A-----LQSLESLGECPAFDLIFIDADKP-----------------------------NNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp H-----HHHHHTCCSCCCCSEEEECSCGG-----------------------------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred H-----HHHHHhcCCCCCeEEEEECCchH-----------------------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 8 44333211235899999976411 1457889999999999999885
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-15 Score=143.36 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=117.2
Q ss_pred CCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCC
Q psy7093 113 PPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP---KLKAIAIDQSKHACDLTEQNAVMHNVA 189 (322)
Q Consensus 113 ~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~---~~~v~~vDis~~al~~A~~n~~~~~l~ 189 (322)
...|+|++.++.+++.+....... ++.+|+|+|||||.+.+.+++.+. ..+++|+|+++.++..|+.|+..+++.
T Consensus 197 G~fyTP~~Vv~lmv~ll~~~~~~~--~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~ 274 (542)
T 3lkd_A 197 GEFYTPQPVAKLMTQIAFLGREDK--QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP 274 (542)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCTTC--TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CeecccHHHHHHHHHHHhcccCCC--CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence 446678877777766654322122 237999999999999999988853 578999999999999999999999875
Q ss_pred -CcEEEEEccCCCccccccc-CcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc
Q psy7093 190 -NQLQVFHAEIDSKGQVKNL-QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267 (322)
Q Consensus 190 -~~i~~~~~D~~~~~~~~~l-~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~ 267 (322)
+++.+.++|. +... +. ....+||+||+||||..............+|.+...+....++ + -.++..+.+
T Consensus 275 ~~~~~I~~gDt-----L~~d~p~-~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~-~--~~Fl~~~l~ 345 (542)
T 3lkd_A 275 IENQFLHNADT-----LDEDWPT-QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKA-D--FAFLLHGYY 345 (542)
T ss_dssp GGGEEEEESCT-----TTSCSCC-SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCC-H--HHHHHHHHH
T ss_pred cCccceEecce-----ecccccc-cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchh-h--HHHHHHHHH
Confidence 4689999998 4431 11 2356899999999998543221110111122222112211221 1 258889999
Q ss_pred cCc-cCcEEEEEEcCC-----C-HHHHHHHHHHcCC
Q psy7093 268 YLK-PNGSIFLETNHD-----H-LDKIKEWLGICGH 296 (322)
Q Consensus 268 ~Lk-~gG~l~~e~~~~-----~-~~~~~~~l~~~~~ 296 (322)
+|+ +||.+.+.++.. . ...+++.+-+.+.
T Consensus 346 ~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 346 HLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp TBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred HhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCc
Confidence 999 999998877542 2 4668888777653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=126.37 Aligned_cols=122 Identities=21% Similarity=0.249 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
.+.+.+.+.+.+.....++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+. +++++++|+
T Consensus 20 ~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~-- 93 (246)
T 1y8c_A 20 YKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDI-- 93 (246)
T ss_dssp HHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCG--
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEeccc--
Confidence 344556666665543223479999999999999999988 67999999999999999999987765 589999998
Q ss_pred cccccccCcCcCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ +. ++||+|+++. .+..... + .-...+++.+.++|+|||.+++++
T Consensus 94 ---~~-~~--~~-~~fD~v~~~~~~l~~~~~-----~------------------~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 94 ---SN-LN--IN-RKFDLITCCLDSTNYIID-----S------------------DDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp ---GG-CC--CS-CCEEEEEECTTGGGGCCS-----H------------------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---cc-CC--cc-CCceEEEEcCccccccCC-----H------------------HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 33 22 23 7899999976 4332110 0 124689999999999999999854
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-14 Score=126.24 Aligned_cols=121 Identities=19% Similarity=0.278 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
...+++.+++.+... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 46 ~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-- 120 (273)
T 3bus_A 46 TDRLTDEMIALLDVR--SGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADA-- 120 (273)
T ss_dssp HHHHHHHHHHHSCCC--TTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--
T ss_pred HHHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc--
Confidence 445566666666543 34799999999999999999875 6899999999999999999999988888899999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ++.++||+|+++..+....+ ...+++.+.++|+|||.+++..
T Consensus 121 ---~~-~~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 121 ---MD-LP--FEDASFDAVWALESLHHMPD--------------------------RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp ---TS-CC--SCTTCEEEEEEESCTTTSSC--------------------------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---cc-CC--CCCCCccEEEEechhhhCCC--------------------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 32 22 34578999999766544322 2478999999999999998754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=126.61 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=108.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...+...+++++++|+ .+.. ..++||+|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~----~~~~fD~v 136 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV-----FTWR----PTELFDLI 136 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCT-----TTCC----CSSCEEEE
T ss_pred CCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECch-----hcCC----CCCCeeEE
Confidence 69999999999999999874 7899999999999999999987765556799999999 3322 34589999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-----------CCHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-----------DHLDKIKE 289 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-----------~~~~~~~~ 289 (322)
+++..+.... ++ ....+++.+.++|+|||.+++.... ...+.+.+
T Consensus 137 ~~~~~l~~~~------~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (235)
T 3lcc_A 137 FDYVFFCAIE------PE------------------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEE 192 (235)
T ss_dssp EEESSTTTSC------GG------------------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHH
T ss_pred EEChhhhcCC------HH------------------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHH
Confidence 9976554321 11 1458899999999999999875421 23688999
Q ss_pred HHHHcCCCCceeeEEEe------cCCCCCCeEEEEEEc
Q psy7093 290 WLGICGHHMKLKLVENY------KDFNNKDRFVELKLV 321 (322)
Q Consensus 290 ~l~~~~~~~~~~~v~~~------~D~~g~~R~~~~~~~ 321 (322)
+++..| |..+.+. ....|.+++...+..
T Consensus 193 ~l~~~G----f~~~~~~~~~~~~~~~~g~e~~~~~~~~ 226 (235)
T 3lcc_A 193 VLVPIG----FKAVSVEENPHAIPTRKGKEKLGRWKKI 226 (235)
T ss_dssp HHGGGT----EEEEEEEECTTCCTTTTTSCEEEEEEES
T ss_pred HHHHcC----CeEEEEEecCCccccccCHHHHhhhhhc
Confidence 999886 6766654 335667777776653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=140.30 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=105.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.+|...++ .+|+++|+|+.+++.+++|++++++. +.++++|+ .+. .. ...++||
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da-----~~l-~~-~~~~~FD 172 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPP-----RAL-AE-AFGTYFH 172 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCH-----HHH-HH-HHCSCEE
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCH-----HHh-hh-hccccCC
Confidence 379999999999999999998764 79999999999999999999999986 89999997 322 11 1246899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~ 290 (322)
+|++||||.....+.. .|.....-..+.+ ...+.++..+.++|||||.+++.++. ...+.+..+
T Consensus 173 ~Il~D~PcSg~G~~rr--------~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~ 244 (464)
T 3m6w_A 173 RVLLDAPCSGEGMFRK--------DREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHF 244 (464)
T ss_dssp EEEEECCCCCGGGTTT--------CTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred EEEECCCcCCcccccc--------ChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHH
Confidence 9999999976554332 2222222222222 34588999999999999999997764 346677778
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
++++.
T Consensus 245 l~~~~ 249 (464)
T 3m6w_A 245 LKAHP 249 (464)
T ss_dssp HHHCT
T ss_pred HHHCC
Confidence 87764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=135.11 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=100.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|||+|||+|..+..++...++ .+|+|+|+|+.+++.+++|++++++. +++++++|+ .+... .+ ..++
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~-----~~~~~-~~~~~~~~ 156 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADM-----RKYKD-YLLKNEIF 156 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCH-----HHHHH-HHHHTTCC
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCCh-----Hhcch-hhhhcccc
Confidence 379999999999999999998766 89999999999999999999999986 599999998 32211 00 1468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEWLG 292 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~l~ 292 (322)
||+|++||||.....+... |.............+..+++.+.++|||||.+++.++. ...+.+..+++
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~--------p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~ 228 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKN--------RNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQ 228 (274)
T ss_dssp EEEEEEEECCC--------------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHH
T ss_pred CCEEEEcCCCCCCcccccC--------CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHH
Confidence 9999999999765543211 10000000011123578999999999999999998754 33566777787
Q ss_pred HcC
Q psy7093 293 ICG 295 (322)
Q Consensus 293 ~~~ 295 (322)
++.
T Consensus 229 ~~~ 231 (274)
T 3ajd_A 229 KRN 231 (274)
T ss_dssp HCS
T ss_pred hCC
Confidence 764
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=128.08 Aligned_cols=131 Identities=19% Similarity=0.220 Sum_probs=103.4
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~ 194 (322)
..+|+|+++.+++.++..... ++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++ ..++++
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~ 95 (226)
T 3m33_A 27 RVLSGPDPELTFDLWLSRLLT---PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN------APHADV 95 (226)
T ss_dssp CEESSSCTTHHHHHHHHHHCC---TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH------CTTSEE
T ss_pred cccCCCCHHHHHHHHHHhcCC---CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh------CCCceE
Confidence 346788999999888765443 2379999999999999999998 67999999999999999988 235899
Q ss_pred EEccCCCcccccccCcCcC-CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 195 FHAEIDSKGQVKNLQPDLL-EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 195 ~~~D~~~~~~~~~l~~~~~-~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
+++|+ .+.++ +. .++||+|++++. ...+++++.++|||||
T Consensus 96 ~~~d~-----~~~~~--~~~~~~fD~v~~~~~--------------------------------~~~~l~~~~~~LkpgG 136 (226)
T 3m33_A 96 YEWNG-----KGELP--AGLGAPFGLIVSRRG--------------------------------PTSVILRLPELAAPDA 136 (226)
T ss_dssp EECCS-----CSSCC--TTCCCCEEEEEEESC--------------------------------CSGGGGGHHHHEEEEE
T ss_pred EEcch-----hhccC--CcCCCCEEEEEeCCC--------------------------------HHHHHHHHHHHcCCCc
Confidence 99998 44443 23 578999999831 0146677889999999
Q ss_pred EEEEEEcCCCHHHHHHHHHHcC
Q psy7093 274 SIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 274 ~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
.++...+....+.+.+.+.+.|
T Consensus 137 ~l~~~~~~~~~~~~~~~l~~~G 158 (226)
T 3m33_A 137 HFLYVGPRLNVPEVPERLAAVG 158 (226)
T ss_dssp EEEEEESSSCCTHHHHHHHHTT
T ss_pred EEEEeCCcCCHHHHHHHHHHCC
Confidence 9984445556677888998886
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-14 Score=125.57 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
...+.+.+.+.+... .++.+|||+|||+|.++..++..+|+.+|+|+|+|+.+++.|++++...+ +++++++|+
T Consensus 28 ~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~-- 101 (234)
T 3dtn_A 28 FDDFYGVSVSIASVD-TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADY-- 101 (234)
T ss_dssp HHHHHHHHHHTCCCS-CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCT--
T ss_pred HHHHHHHHHHHhhcC-CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCch--
Confidence 344556666666532 23479999999999999999999999999999999999999998876544 699999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ..++||+|+++.++....+ . ....+++++.++|+|||.+++..
T Consensus 102 ---~~-~~---~~~~fD~v~~~~~l~~~~~------~------------------~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 102 ---SK-YD---FEEKYDMVVSALSIHHLED------E------------------DKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp ---TT-CC---CCSCEEEEEEESCGGGSCH------H------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hc-cC---CCCCceEEEEeCccccCCH------H------------------HHHHHHHHHHHhcCCCcEEEEEE
Confidence 33 22 1278999999876543221 1 12368999999999999998854
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=125.95 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=98.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC----cEE
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN----QLQ 193 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~----~i~ 193 (322)
|.|......+.+.+.+.... +.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...++.. +++
T Consensus 10 p~~~~~~~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~ 87 (217)
T 3jwh_A 10 PISLNQQRMNGVVAALKQSN--ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ 87 (217)
T ss_dssp -CCHHHHHHHHHHHHHHHTT--CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEE
T ss_pred CCCHHHHHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceE
Confidence 44566777778877776543 379999999999999999998777899999999999999999998777654 799
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
++++|+ .. .+ ...++||+|+++-.+.... .. .+..+++.+.++|+|||
T Consensus 88 ~~~~d~-----~~-~~--~~~~~fD~v~~~~~l~~~~------~~------------------~~~~~l~~~~~~LkpgG 135 (217)
T 3jwh_A 88 LIQGAL-----TY-QD--KRFHGYDAATVIEVIEHLD------LS------------------RLGAFERVLFEFAQPKI 135 (217)
T ss_dssp EEECCT-----TS-CC--GGGCSCSEEEEESCGGGCC------HH------------------HHHHHHHHHHTTTCCSE
T ss_pred EEeCCc-----cc-cc--ccCCCcCEEeeHHHHHcCC------HH------------------HHHHHHHHHHHHcCCCE
Confidence 999998 22 11 2346899999975543221 11 14589999999999999
Q ss_pred EEEEEE
Q psy7093 274 SIFLET 279 (322)
Q Consensus 274 ~l~~e~ 279 (322)
++++..
T Consensus 136 ~li~~~ 141 (217)
T 3jwh_A 136 VIVTTP 141 (217)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 777643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-14 Score=128.86 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=86.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++..+++++++|+ .+. +. +..++||+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~-~~-~~~~~fD~ 139 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA-----QDV-AS-HLETPVDL 139 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCG-----GGT-GG-GCSSCEEE
T ss_pred CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCH-----HHh-hh-hcCCCceE
Confidence 379999999999999999998 7799999999999999999999888877899999998 332 21 24578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++-.+....+ ...+++.+.++|+|||.+++..
T Consensus 140 v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 140 ILFHAVLEWVAD--------------------------PRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp EEEESCGGGCSC--------------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECchhhcccC--------------------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 999765543222 3478999999999999999876
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-15 Score=128.64 Aligned_cols=122 Identities=14% Similarity=0.237 Sum_probs=96.7
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
+.|....++..++.... +.+|||+|||+|..+..+++.+|+.+|+++|+++.+++.|++|+...++.++++++++
T Consensus 38 ~~~~~~~~l~~~~~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 112 (233)
T 2gpy_A 38 MDLLGMESLLHLLKMAA-----PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112 (233)
T ss_dssp CCHHHHHHHHHHHHHHC-----CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS
T ss_pred cCHHHHHHHHHHHhccC-----CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 35555555555544322 2799999999999999999998889999999999999999999999998778999999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ .+.++.....++||+|++++|.. .+..+++.+.++|+|||.+++
T Consensus 113 d~-----~~~~~~~~~~~~fD~I~~~~~~~-----------------------------~~~~~l~~~~~~L~pgG~lv~ 158 (233)
T 2gpy_A 113 DA-----LQLGEKLELYPLFDVLFIDAAKG-----------------------------QYRRFFDMYSPMVRPGGLILS 158 (233)
T ss_dssp CG-----GGSHHHHTTSCCEEEEEEEGGGS-----------------------------CHHHHHHHHGGGEEEEEEEEE
T ss_pred CH-----HHHHHhcccCCCccEEEECCCHH-----------------------------HHHHHHHHHHHHcCCCeEEEE
Confidence 98 44322111146899999987642 045789999999999999998
Q ss_pred E
Q psy7093 278 E 278 (322)
Q Consensus 278 e 278 (322)
.
T Consensus 159 ~ 159 (233)
T 2gpy_A 159 D 159 (233)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=138.27 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=118.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..+..++...++.+|+++|+|+.+++.+++|+.++++. ++++++|+ ... ...+..++||+
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~-----~~~-~~~~~~~~fD~ 318 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDG-----RYP-SQWCGEQQFDR 318 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCT-----TCT-HHHHTTCCEEE
T ss_pred cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCch-----hhc-hhhcccCCCCE
Confidence 37999999999999999999987789999999999999999999999874 78899998 322 11123468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEWL 291 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~l 291 (322)
|++||||.....+...+... .......+ ..+..++..+.++|||||.+++.++. .....+..++
T Consensus 319 Vl~D~Pcsg~g~~~~~p~~~--------~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l 390 (429)
T 1sqg_A 319 ILLDAPCSATGVIRRHPDIK--------WLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFL 390 (429)
T ss_dssp EEEECCCCCGGGTTTCTTHH--------HHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred EEEeCCCCcccccCCCcchh--------hcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHH
Confidence 99999998765543322211 11111111 34578999999999999999997753 3456678888
Q ss_pred HHcCCCCceee----------EEEecCCCCCCeEEEEE
Q psy7093 292 GICGHHMKLKL----------VENYKDFNNKDRFVELK 319 (322)
Q Consensus 292 ~~~~~~~~~~~----------v~~~~D~~g~~R~~~~~ 319 (322)
.++. +|.. +.++.+..+.+-|.++.
T Consensus 391 ~~~~---~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~ 425 (429)
T 1sqg_A 391 QRTA---DAELCETGTPEQPGKQNLPGAEEGDGFFYAK 425 (429)
T ss_dssp HHCT---TCEECSSBCSSSBSEEECCCTTSCCSEEEEE
T ss_pred HhCC---CCEEeCCCCCCCCeEEECCCCCCCCceEEEE
Confidence 8764 2433 35677777778777654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=125.64 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=94.6
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
+.+..++..+..... +.+|||+|||+|..+..++..+| +.+|+++|+++.+++.|++|+...++.++++++++|
T Consensus 44 ~~~~~~l~~l~~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d 118 (223)
T 3duw_A 44 PTQGKFLQLLVQIQG-----ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGL 118 (223)
T ss_dssp HHHHHHHHHHHHHHT-----CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHHHHHHhhC-----CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 455555555544332 27999999999999999999988 789999999999999999999999998889999999
Q ss_pred CCCcccccccCcCc--CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 199 IDSKGQVKNLQPDL--LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 199 ~~~~~~~~~l~~~~--~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+ .+.++... ..++||+|+++++.. .+..+++.+.++|+|||+++
T Consensus 119 ~-----~~~~~~~~~~~~~~fD~v~~d~~~~-----------------------------~~~~~l~~~~~~L~pgG~lv 164 (223)
T 3duw_A 119 A-----LDSLQQIENEKYEPFDFIFIDADKQ-----------------------------NNPAYFEWALKLSRPGTVII 164 (223)
T ss_dssp H-----HHHHHHHHHTTCCCCSEEEECSCGG-----------------------------GHHHHHHHHHHTCCTTCEEE
T ss_pred H-----HHHHHHHHhcCCCCcCEEEEcCCcH-----------------------------HHHHHHHHHHHhcCCCcEEE
Confidence 8 44322100 125799999986521 14578899999999999988
Q ss_pred EE
Q psy7093 277 LE 278 (322)
Q Consensus 277 ~e 278 (322)
+.
T Consensus 165 ~~ 166 (223)
T 3duw_A 165 GD 166 (223)
T ss_dssp EE
T ss_pred Ee
Confidence 85
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=138.79 Aligned_cols=131 Identities=19% Similarity=0.307 Sum_probs=103.1
Q ss_pred ecCeEEEeCCCCccc--CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIP--RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~ip--rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.|..|.++++.|+. +..++.+++.+.+ +.. +.+|||+|||+|.+++.+|+. ..+|+|+|+|+.+++.|++
T Consensus 258 ~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~~~----~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~ 330 (425)
T 2jjq_A 258 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-LVE----GEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARR 330 (425)
T ss_dssp ETTEEEEECTTSCCCSBHHHHHHHHHHHHH-HCC----SSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred ECCEEEEEccccccccCHHHHHHHHHHhhc-cCC----CCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 578999999999983 4566777787777 322 379999999999999999987 6799999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
|+..+++. ++++++|+ .+.++ .+||+|++|||+.... ..+
T Consensus 331 n~~~ngl~--v~~~~~d~-----~~~~~-----~~fD~Vv~dPPr~g~~----------------------------~~~ 370 (425)
T 2jjq_A 331 NVEINNVD--AEFEVASD-----REVSV-----KGFDTVIVDPPRAGLH----------------------------PRL 370 (425)
T ss_dssp HHHHHTCC--EEEEECCT-----TTCCC-----TTCSEEEECCCTTCSC----------------------------HHH
T ss_pred HHHHcCCc--EEEEECCh-----HHcCc-----cCCCEEEEcCCccchH----------------------------HHH
Confidence 99998875 99999999 44322 2799999999974211 123
Q ss_pred HHHHhccCccCcEEEEEEcCC
Q psy7093 262 CVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
++.+. .|+|+|++++.+++.
T Consensus 371 ~~~l~-~l~p~givyvsc~p~ 390 (425)
T 2jjq_A 371 VKRLN-REKPGVIVYVSCNPE 390 (425)
T ss_dssp HHHHH-HHCCSEEEEEESCHH
T ss_pred HHHHH-hcCCCcEEEEECChH
Confidence 33333 489999999977553
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=129.10 Aligned_cols=121 Identities=15% Similarity=0.219 Sum_probs=96.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.+....++..+..... +.+|||+|||+|..++.++..+| +.+|+++|+++.+++.|++|++..++.++++++++
T Consensus 49 ~~~~~~~l~~l~~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~ 123 (225)
T 3tr6_A 49 APEQAQLLALLVKLMQ-----AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS 123 (225)
T ss_dssp CHHHHHHHHHHHHHHT-----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred CHHHHHHHHHHHHhhC-----CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC
Confidence 4555666666555432 27999999999999999999887 78999999999999999999999998888999999
Q ss_pred cCCCcccccccCcCc---CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPDL---LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~~---~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++... ..++||+|+++++.. .+..+++.+.++|+|||+
T Consensus 124 d~-----~~~~~~~~~~~~~~~fD~v~~~~~~~-----------------------------~~~~~l~~~~~~L~pgG~ 169 (225)
T 3tr6_A 124 PA-----KDTLAELIHAGQAWQYDLIYIDADKA-----------------------------NTDLYYEESLKLLREGGL 169 (225)
T ss_dssp CH-----HHHHHHHHTTTCTTCEEEEEECSCGG-----------------------------GHHHHHHHHHHHEEEEEE
T ss_pred CH-----HHHHHHhhhccCCCCccEEEECCCHH-----------------------------HHHHHHHHHHHhcCCCcE
Confidence 98 44332110 116899999987521 145788999999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 170 lv~~ 173 (225)
T 3tr6_A 170 IAVD 173 (225)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=125.90 Aligned_cols=119 Identities=9% Similarity=0.124 Sum_probs=95.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
+.+.+..++..+..... +.+|||+|||+|..++.+++.++ +.+|+++|+|+.+++.|++|++..++.+++++++
T Consensus 40 ~~~~~~~~l~~l~~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 114 (210)
T 3c3p_A 40 VDRQTGRLLYLLARIKQ-----PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQV 114 (210)
T ss_dssp CCHHHHHHHHHHHHHHC-----CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEE
T ss_pred cCHHHHHHHHHHHHhhC-----CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEE
Confidence 35667777766655432 27899999999999999999887 7899999999999999999999888877899999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+ .+.++. ..+ ||+|+++.+.. .+..+++.+.++|+|||+++
T Consensus 115 ~d~-----~~~~~~--~~~-fD~v~~~~~~~-----------------------------~~~~~l~~~~~~LkpgG~lv 157 (210)
T 3c3p_A 115 GDP-----LGIAAG--QRD-IDILFMDCDVF-----------------------------NGADVLERMNRCLAKNALLI 157 (210)
T ss_dssp SCH-----HHHHTT--CCS-EEEEEEETTTS-----------------------------CHHHHHHHHGGGEEEEEEEE
T ss_pred ecH-----HHHhcc--CCC-CCEEEEcCChh-----------------------------hhHHHHHHHHHhcCCCeEEE
Confidence 998 443332 235 99999984311 14578999999999999998
Q ss_pred EE
Q psy7093 277 LE 278 (322)
Q Consensus 277 ~e 278 (322)
+.
T Consensus 158 ~~ 159 (210)
T 3c3p_A 158 AV 159 (210)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=130.10 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=96.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------cCCCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM------HNVANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~------~~l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
.+|||+|||+|.+++.+|..+|+..|+|+|+|+.+++.|+++++. .++. ++.++++|+ .+.++..+..
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~-----~~~l~~~~~~ 121 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNA-----MKHLPNFFYK 121 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCT-----TTCHHHHCCT
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcH-----HHhhhhhCCC
Confidence 689999999999999999999999999999999999999998764 2443 599999998 4333222346
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHHHHH
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEWLGI 293 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~ 293 (322)
+.||.|+++.|-......+. ... -+...+++.+.++|+|||.+++.+... ....+.+.+..
T Consensus 122 ~~~D~v~~~~~dp~~k~~h~--------krr----------~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 122 GQLTKMFFLFPDPHFKRTKH--------KWR----------IISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEE 183 (235)
T ss_dssp TCEEEEEEESCC-----------------------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred cCeeEEEEeCCCchhhhhhh--------hhh----------hhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 78999998754211110000 000 012478999999999999999987653 24555666666
Q ss_pred cCCCCceeeE
Q psy7093 294 CGHHMKLKLV 303 (322)
Q Consensus 294 ~~~~~~~~~v 303 (322)
++ +|..+
T Consensus 184 ~~---~f~~~ 190 (235)
T 3ckk_A 184 HP---LFERV 190 (235)
T ss_dssp ST---TEEEE
T ss_pred CC---Ccccc
Confidence 65 36554
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-15 Score=128.84 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=70.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+..+++.++++++++|+ .+.. ..++||+|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-----~~~~----~~~~~D~v 148 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDF-----LLLA----SFLKADVV 148 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH-----HHHG----GGCCCSEE
T ss_pred CEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECCh-----HHhc----ccCCCCEE
Confidence 79999999999999999997 5899999999999999999999999866799999998 4332 34689999
Q ss_pred EEcCCCCCCCC
Q psy7093 221 VSNPPYVPSLD 231 (322)
Q Consensus 221 v~NPPy~~~~~ 231 (322)
++||||.....
T Consensus 149 ~~~~~~~~~~~ 159 (241)
T 3gdh_A 149 FLSPPWGGPDY 159 (241)
T ss_dssp EECCCCSSGGG
T ss_pred EECCCcCCcch
Confidence 99999986543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-14 Score=135.52 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=105.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..+..++..+++ .+|+++|+|+.+++.+++|++++++. +++++++|+ ... +..+..++||
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~-----~~~-~~~~~~~~fD 332 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDA-----RKA-PEIIGEEVAD 332 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCT-----TCC-SSSSCSSCEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcCh-----hhc-chhhccCCCC
Confidence 379999999999999999998876 79999999999999999999999986 499999998 322 2112336899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh-HHHHHHHHHHhccCccCcEEEEEEcCC----CHHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL-NIIKPICVFGSNYLKPNGSIFLETNHD----HLDKIKEWLGI 293 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl-~~~~~~l~~~~~~Lk~gG~l~~e~~~~----~~~~~~~~l~~ 293 (322)
+|++|||+.....+...+.......|.. -..+ .....++..+.++|||||.+++.++.- ..+.+..++++
T Consensus 333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~-----~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~ 407 (450)
T 2yxl_A 333 KVLLDAPCTSSGTIGKNPELRWRLREDK-----INEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407 (450)
T ss_dssp EEEEECCCCCGGGTTTSTTHHHHCCTTS-----HHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred EEEEcCCCCCCeeeccChhhhhhCCHHH-----HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 9999999976654433222111111110 0011 223689999999999999999876543 34567788887
Q ss_pred cC
Q psy7093 294 CG 295 (322)
Q Consensus 294 ~~ 295 (322)
+.
T Consensus 408 ~~ 409 (450)
T 2yxl_A 408 HP 409 (450)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-14 Score=129.51 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=105.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH---NVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~---~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++... ....+++++.+|+ .+.+. ....++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~-----~~~~~-~~~~~~ 169 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDG-----LAFVR-QTPDNT 169 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH-----HHHHH-SSCTTC
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH-----HHHHH-hccCCc
Confidence 47999999999999999998867789999999999999999987431 1245799999998 43321 112568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-----CHHHHHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-----HLDKIKEWL 291 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-----~~~~~~~~l 291 (322)
||+|++|+++.... ...|+ ...+++.+.++|+|||++++..+.. ....+.+.+
T Consensus 170 fDvIi~d~~~~~~~--------------~~~l~--------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 227 (304)
T 3bwc_A 170 YDVVIIDTTDPAGP--------------ASKLF--------GEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFI 227 (304)
T ss_dssp EEEEEEECC-----------------------C--------CHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHH
T ss_pred eeEEEECCCCcccc--------------chhhh--------HHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHH
Confidence 99999998763211 00110 1478889999999999999987652 234566667
Q ss_pred HHcCCCCceeeEEEecC----C-CCCCeEEEEEE
Q psy7093 292 GICGHHMKLKLVENYKD----F-NNKDRFVELKL 320 (322)
Q Consensus 292 ~~~~~~~~~~~v~~~~D----~-~g~~R~~~~~~ 320 (322)
++.| |..+.++.- . .|...|+.+.+
T Consensus 228 ~~~G----F~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 228 RETG----FASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHHT----CSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred HhCC----CCcEEEEEeecccccCcceEEEEEeC
Confidence 7765 566665532 2 47777888775
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=126.41 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=105.9
Q ss_pred CCCcccCchhHHHHHHHHHH----------------hccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHH
Q psy7093 113 PPVFIPRSETEELIDIITDK----------------LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176 (322)
Q Consensus 113 ~~~~iprp~te~lv~~i~~~----------------~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al 176 (322)
+.+++|+|+++.+.+..... +... ++.+|||+|||+|.++..+++. ..+|+++|+++.++
T Consensus 51 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~ 126 (248)
T 2yvl_A 51 NGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLN--KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFY 126 (248)
T ss_dssp TTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHH
T ss_pred EEEEEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcCCC--CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHH
Confidence 66778999988877543321 1111 3479999999999999999998 78999999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhH
Q psy7093 177 DLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256 (322)
Q Consensus 177 ~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~ 256 (322)
+.|++|....++..++++..+|+ .+.. ...+.||+|++|+|..
T Consensus 127 ~~a~~~~~~~~~~~~~~~~~~d~-----~~~~---~~~~~~D~v~~~~~~~----------------------------- 169 (248)
T 2yvl_A 127 KTAQKNLKKFNLGKNVKFFNVDF-----KDAE---VPEGIFHAAFVDVREP----------------------------- 169 (248)
T ss_dssp HHHHHHHHHTTCCTTEEEECSCT-----TTSC---CCTTCBSEEEECSSCG-----------------------------
T ss_pred HHHHHHHHHcCCCCcEEEEEcCh-----hhcc---cCCCcccEEEECCcCH-----------------------------
Confidence 99999999888867799999998 4432 1346799999998721
Q ss_pred HHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHH
Q psy7093 257 IIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGI 293 (322)
Q Consensus 257 ~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~ 293 (322)
..+++.+.++|+|||.+++.++. .+...+.+.+.+
T Consensus 170 --~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 205 (248)
T 2yvl_A 170 --WHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIEN 205 (248)
T ss_dssp --GGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTT
T ss_pred --HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 14677889999999999998874 344555555443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=133.80 Aligned_cols=117 Identities=22% Similarity=0.288 Sum_probs=94.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDl 219 (322)
.+|||+|||+|.+++.++.. ..+|+++|+|+.+++.|++|++.+++.+ ++++++|+ .+.++.. ....+||+
T Consensus 211 ~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~-----~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANA-----FDLLRRLEKEGERFDL 282 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCH-----HHHHHHHHHTTCCEEE
T ss_pred CeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCH-----HHHHHHHHhcCCCeeE
Confidence 78999999999999999998 6799999999999999999999999876 99999998 4433210 01468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
|++|||+....... + ......+..++..+.++|+|||++++.+...
T Consensus 283 Ii~dpP~~~~~~~~-----~------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 283 VVLDPPAFAKGKKD-----V------------ERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEECCCCSCCSTTS-----H------------HHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEECCCCCCCChhH-----H------------HHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99999987643210 0 0223457889999999999999999987653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-14 Score=126.60 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=96.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
.++.+++.+... ++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 60 ~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~----- 131 (302)
T 3hem_A 60 KRKLALDKLNLE--PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW----- 131 (302)
T ss_dssp HHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG-----
T ss_pred HHHHHHHHcCCC--CcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH-----
Confidence 344555555433 337999999999999999999876 799999999999999999999999888899999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ + .++||+|+++..+....+.. ...|.+.+..+++.+.++|||||.+++..
T Consensus 132 ~~-~-----~~~fD~v~~~~~~~~~~d~~-----------------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 132 EE-F-----DEPVDRIVSLGAFEHFADGA-----------------GDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp GG-C-----CCCCSEEEEESCGGGTTCCS-----------------SCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred HH-c-----CCCccEEEEcchHHhcCccc-----------------cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22 2 57899999986654432210 00133446789999999999999998864
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-15 Score=131.56 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=99.5
Q ss_pred CCeEEEEcCchhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKH-FPKLKAIAIDQSKHACDLTEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~-~~~~~v~~vDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|||+|||+|.++..+++. .|+.+|+++|+++.+++.|++|+... +. ++++++++|+ .+.+ +.++|
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~-----~~~~----~~~~f 180 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDI-----ADFI----SDQMY 180 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCT-----TTCC----CSCCE
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECch-----hccC----cCCCc
Confidence 479999999999999999997 67889999999999999999999887 74 4599999998 4432 35689
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHHHHHcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEWLGICGH 296 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~~~~ 296 (322)
|+|++|+|-. ..+++.+.++|+|||.+++.+... +...+.+.+.+.|
T Consensus 181 D~Vi~~~~~~-------------------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~G- 228 (275)
T 1yb2_A 181 DAVIADIPDP-------------------------------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASG- 228 (275)
T ss_dssp EEEEECCSCG-------------------------------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGT-
T ss_pred cEEEEcCcCH-------------------------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCC-
Confidence 9999987621 157788899999999999987654 5566667777665
Q ss_pred CCceeeEEEec
Q psy7093 297 HMKLKLVENYK 307 (322)
Q Consensus 297 ~~~~~~v~~~~ 307 (322)
|..++++.
T Consensus 229 ---f~~~~~~~ 236 (275)
T 1yb2_A 229 ---MHHLETVE 236 (275)
T ss_dssp ---EEEEEEEE
T ss_pred ---CeEEEEEE
Confidence 67666654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=127.80 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=95.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--------NVANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--------~l~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||+|||+|.+++.++...|..+|+|+|+|+.+++.|++|+..+ ++. ++.++++|+ .+.++..+
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~-----~~~l~~~~ 124 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNA-----MKFLPNFF 124 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCT-----TSCGGGTS
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccH-----HHHHHHhc
Confidence 6899999999999999999988889999999999999999999876 664 599999999 54444334
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-HHHHHHHH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-LDKIKEWL 291 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-~~~~~~~l 291 (322)
..+.+|.|+.+.|-........ ... . ++..++..+.++|+|||.+++.+.... .+.+.+.+
T Consensus 125 ~~~~~d~v~~~~p~p~~k~~~~--------~~r-~---------~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~ 186 (246)
T 2vdv_E 125 EKGQLSKMFFCFPDPHFKQRKH--------KAR-I---------ITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHL 186 (246)
T ss_dssp CTTCEEEEEEESCCCC--------------CSS-C---------CCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHH
T ss_pred cccccCEEEEECCCcccccchh--------HHh-h---------ccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHH
Confidence 5678999987643221111000 000 0 024789999999999999999775533 34455555
Q ss_pred HHcC
Q psy7093 292 GICG 295 (322)
Q Consensus 292 ~~~~ 295 (322)
..++
T Consensus 187 ~~~~ 190 (246)
T 2vdv_E 187 EEHP 190 (246)
T ss_dssp HHST
T ss_pred HhCc
Confidence 5554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=136.13 Aligned_cols=120 Identities=21% Similarity=0.317 Sum_probs=94.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fD 218 (322)
+.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|+..+++.++++++++|+ .+.++.. ....+||
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~-----~~~~~~~~~~~~~fD 291 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA-----FEEMEKLQKKGEKFD 291 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH-----HHHHHHHHHTTCCEE
T ss_pred CCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCH-----HHHHHHHHhhCCCCC
Confidence 379999999999999999987 45699999999999999999999999876799999998 4432210 0146899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+|++|||+...... .+ ......+..++..+.++|+|||.+++..+..
T Consensus 292 ~Vi~dpP~~~~~~~-----~~------------~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 292 IVVLDPPAFVQHEK-----DL------------KAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EEEECCCCSCSSGG-----GH------------HHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EEEECCCCCCCCHH-----HH------------HHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 99999998754321 11 0123447789999999999999988876543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.57 E-value=7e-15 Score=141.24 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=105.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.+|...++ .+|+++|+|+.+++.+++|++++++.+ +.+.++|. ... .. ...++||
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da-----~~l-~~-~~~~~FD 177 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAP-----AEL-VP-HFSGFFD 177 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCH-----HHH-HH-HHTTCEE
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCH-----HHh-hh-hccccCC
Confidence 479999999999999999987654 799999999999999999999999874 99999997 222 11 1246899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~ 290 (322)
+|++|||+.....+.. .|.....-..+.+ ...+.++..+.++|||||.+++.++. ...+.+..+
T Consensus 178 ~Il~DaPCSg~G~~rr--------~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~ 249 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRK--------DPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWL 249 (456)
T ss_dssp EEEEECCCCCGGGTTT--------CHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred EEEECCCCCCcccccc--------CHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHH
Confidence 9999999876554432 2222211122222 34568999999999999999997764 346677788
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
+++++
T Consensus 250 l~~~~ 254 (456)
T 3m4x_A 250 VENYP 254 (456)
T ss_dssp HHHSS
T ss_pred HHhCC
Confidence 87764
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=142.86 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=109.8
Q ss_pred CCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC---------------CCEEEEEeCCHHHHHH
Q psy7093 114 PVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP---------------KLKAIAIDQSKHACDL 178 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~---------------~~~v~~vDis~~al~~ 178 (322)
..++|++.++.+++.+ ... +.+|+|+|||||.+.+.+++.+. ..+++|+|+++.++.+
T Consensus 226 ~fyTP~~Vv~lmv~ll----~p~---~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~l 298 (544)
T 3khk_A 226 QYYTPKSIVTLIVEML----EPY---KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL 298 (544)
T ss_dssp TTCCCHHHHHHHHHHH----CCC---SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHH
T ss_pred eEeCCHHHHHHHHHHH----hcC---CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHH
Confidence 3566776666655543 332 25899999999999998876432 4689999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhccccccc----------c
Q psy7093 179 TEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKA----------L 248 (322)
Q Consensus 179 A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~a----------l 248 (322)
|+.|+..+++..++.+.++|. +.... ....+||+||+||||....-.. +.....+... +
T Consensus 299 A~~Nl~l~gi~~~i~i~~gDt-----L~~~~--~~~~~fD~Iv~NPPf~~~~~~~----~~~~~d~r~~~g~~~~~~~~~ 367 (544)
T 3khk_A 299 AAMNMVIRGIDFNFGKKNADS-----FLDDQ--HPDLRADFVMTNPPFNMKDWWH----EKLADDPRWTINTNGEKRILT 367 (544)
T ss_dssp HHHHHHHTTCCCBCCSSSCCT-----TTSCS--CTTCCEEEEEECCCSSCCSCCC----GGGTTCGGGEECCC--CEECC
T ss_pred HHHHHHHhCCCcccceeccch-----hcCcc--cccccccEEEECCCcCCccccc----hhhhhhhhhhcCccccccccc
Confidence 999999999876665588887 43321 2356899999999998632111 1111122111 1
Q ss_pred cCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-----C--CHHHHHHHHHHcCC
Q psy7093 249 DGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-----D--HLDKIKEWLGICGH 296 (322)
Q Consensus 249 ~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-----~--~~~~~~~~l~~~~~ 296 (322)
..... .+ -.++..+.++|+|||.+.+.++. . ....+++.+-+.+.
T Consensus 368 ~~~~~-~~--~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 368 PPTGN-AN--FAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp CCTTC-TH--HHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred CCCcc-hh--HHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence 11111 11 25888899999999999887753 1 35678888877653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=125.04 Aligned_cols=145 Identities=14% Similarity=0.254 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHh----ccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 121 ETEELIDIITDKL----ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 121 ~te~lv~~i~~~~----~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.....++.+++.+ ... ++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...++.+++++++
T Consensus 62 ~~~~~~~~l~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 138 (297)
T 2o57_A 62 ASLRTDEWLASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHHHhhhccCCC--CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE
Confidence 3445556677766 322 34799999999999999999875 4699999999999999999999888877899999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+ .+ ++ ++.++||+|+++-......+ ...+++++.++|||||.++
T Consensus 139 ~d~-----~~-~~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~ 184 (297)
T 2o57_A 139 GSF-----LE-IP--CEDNSYDFIWSQDAFLHSPD--------------------------KLKVFQECARVLKPRGVMA 184 (297)
T ss_dssp CCT-----TS-CS--SCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred cCc-----cc-CC--CCCCCEeEEEecchhhhcCC--------------------------HHHHHHHHHHHcCCCeEEE
Confidence 998 32 22 34678999999754433221 3478999999999999998
Q ss_pred EEEcC----------------------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 277 LETNH----------------------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 277 ~e~~~----------------------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+.... .....+.+++++.| |..+++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~ 232 (297)
T 2o57_A 185 ITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECG----LVTLRTF 232 (297)
T ss_dssp EEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTT----EEEEEEE
T ss_pred EEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCC----CeEEEEE
Confidence 86421 13455667777775 6666543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=123.26 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=90.2
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.+..+.+.+++. +... ++.+|||+|||+|.++..++... .+|+|+|+|+.+++.|++++...++. ++.+++
T Consensus 21 ~~~~~~~~l~~~----l~~~--~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~ 91 (260)
T 1vl5_A 21 AKGSDLAKLMQI----AALK--GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQ 91 (260)
T ss_dssp --CCCHHHHHHH----HTCC--SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred cCHHHHHHHHHH----hCCC--CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEE
Confidence 344555554443 3333 23799999999999999999984 49999999999999999999888865 599999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+ . .++ ++.++||+|+++-......+ ...+++++.++|+|||+++
T Consensus 92 ~d~-----~-~l~--~~~~~fD~V~~~~~l~~~~d--------------------------~~~~l~~~~r~LkpgG~l~ 137 (260)
T 1vl5_A 92 GDA-----E-QMP--FTDERFHIVTCRIAAHHFPN--------------------------PASFVSEAYRVLKKGGQLL 137 (260)
T ss_dssp CCC-------CCC--SCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred ecH-----H-hCC--CCCCCEEEEEEhhhhHhcCC--------------------------HHHHHHHHHHHcCCCCEEE
Confidence 998 2 232 34678999999855433222 3478999999999999998
Q ss_pred EE
Q psy7093 277 LE 278 (322)
Q Consensus 277 ~e 278 (322)
+.
T Consensus 138 ~~ 139 (260)
T 1vl5_A 138 LV 139 (260)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-14 Score=133.26 Aligned_cols=135 Identities=14% Similarity=0.092 Sum_probs=99.4
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC----------------------------------
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK---------------------------------- 163 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~---------------------------------- 163 (322)
+.|-.|.+...++....... +..++|++||||.+++.+|....+
T Consensus 175 ~Apl~e~LAaall~l~~~~~--~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 252 (384)
T 3ldg_A 175 GAPIKENMAAAIILLSNWFP--DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQAD 252 (384)
T ss_dssp -CCCCHHHHHHHHHHTTCCT--TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCcHHHHHHHHHHhCCCC--CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhh
Confidence 45667888888887766543 378999999999999998865322
Q ss_pred ----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 164 ----LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 164 ----~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.+|+|+|+|+.+++.|++|+...++.+++++.++|+ .+. + ...+||+||+||||...-.. ..+
T Consensus 253 ~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~-----~~l-~---~~~~fD~Iv~NPPYG~rl~~---~~~- 319 (384)
T 3ldg_A 253 YDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRL-----QDF-K---TNKINGVLISNPPYGERLLD---DKA- 319 (384)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCG-----GGC-C---CCCCSCEEEECCCCTTTTSC---HHH-
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-----HHC-C---ccCCcCEEEECCchhhccCC---HHH-
Confidence 469999999999999999999999988899999998 432 2 23589999999999754210 011
Q ss_pred hcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 240 ALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 240 ~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
-..+|+.+-+...+ .+||.+++-+++..
T Consensus 320 --------------l~~ly~~lg~~lk~--~~g~~~~iit~~~~ 347 (384)
T 3ldg_A 320 --------------VDILYNEMGETFAP--LKTWSQFILTNDTD 347 (384)
T ss_dssp --------------HHHHHHHHHHHHTT--CTTSEEEEEESCTT
T ss_pred --------------HHHHHHHHHHHHhh--CCCcEEEEEECCHH
Confidence 11345555554444 36999988787655
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-14 Score=126.74 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=103.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++..+..+|+++|+++.+++.|++|+... ++ .++++++.+|+ .+.+.. ..++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~-----~~~l~~--~~~~ 148 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG-----FMHIAK--SENQ 148 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS-----HHHHHT--CCSC
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH-----HHHHhh--CCCC
Confidence 47999999999999999998767789999999999999999997542 33 35799999998 544432 2468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~ 294 (322)
||+|++|+|+.... .. .|+ ...+++.+.++|+|||++++.++. .+.+.+..+.+..
T Consensus 149 fD~Ii~d~~~~~~~-~~-------------~l~--------~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l 206 (275)
T 1iy9_A 149 YDVIMVDSTEPVGP-AV-------------NLF--------TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDV 206 (275)
T ss_dssp EEEEEESCSSCCSC-CC-------------CCS--------TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred eeEEEECCCCCCCc-ch-------------hhh--------HHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHH
Confidence 99999999863211 00 010 136888899999999999998754 3344444443322
Q ss_pred CCCCceeeEEEec---CC--CCCCeEEEEEE
Q psy7093 295 GHHMKLKLVENYK---DF--NNKDRFVELKL 320 (322)
Q Consensus 295 ~~~~~~~~v~~~~---D~--~g~~R~~~~~~ 320 (322)
.. .|..+..+. .. .|..-|+.+.|
T Consensus 207 ~~--~F~~v~~~~~~vp~~~~g~w~~~~ask 235 (275)
T 1iy9_A 207 KE--IFPITKLYTANIPTYPSGLWTFTIGSK 235 (275)
T ss_dssp HT--TCSEEEEEEECCTTSGGGCEEEEEEES
T ss_pred HH--hCCCeEEEEEecCcccCcceEEEEeeC
Confidence 11 245555443 11 35556666654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-14 Score=124.50 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=106.6
Q ss_pred CchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|....+...+...+.... .++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++|++.. .++.++.+
T Consensus 53 ~~~~~~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~ 129 (230)
T 1fbn_A 53 NPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILG 129 (230)
T ss_dssp CTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEEC
T ss_pred CcchhHHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEEC
Confidence 3444445555522222111 1347999999999999999999987789999999999999999997654 46999999
Q ss_pred cCCCcccccccC-cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 198 EIDSKGQVKNLQ-PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 198 D~~~~~~~~~l~-~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
|+ ..... ..+. ++||+|+.++|.. +....+++.+.++|+|||.++
T Consensus 130 d~-----~~~~~~~~~~-~~~D~v~~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~l~ 175 (230)
T 1fbn_A 130 DA-----NKPQEYANIV-EKVDVIYEDVAQP----------------------------NQAEILIKNAKWFLKKGGYGM 175 (230)
T ss_dssp CT-----TCGGGGTTTS-CCEEEEEECCCST----------------------------THHHHHHHHHHHHEEEEEEEE
T ss_pred CC-----CCcccccccC-ccEEEEEEecCCh----------------------------hHHHHHHHHHHHhCCCCcEEE
Confidence 98 32110 0122 6899999765421 013577999999999999999
Q ss_pred EEEcC---CC--------HHHHHHHHHHcCCCCceeeEEEe-cCCCCCC-eEEEEEE
Q psy7093 277 LETNH---DH--------LDKIKEWLGICGHHMKLKLVENY-KDFNNKD-RFVELKL 320 (322)
Q Consensus 277 ~e~~~---~~--------~~~~~~~l~~~~~~~~~~~v~~~-~D~~g~~-R~~~~~~ 320 (322)
+.+.. .. .+.+. ++.+.| |..+++. -+.+..+ -+++++|
T Consensus 176 i~~~~~~~~~~~~~~~~~~~~l~-~l~~~G----f~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 176 IAIKARSIDVTKDPKEIFKEQKE-ILEAGG----FKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEGGGTCSSSCHHHHHHHHHH-HHHHHT----EEEEEEEECTTTSTTEEEEEEEE
T ss_pred EEEecCCCCCCCCHHHhhHHHHH-HHHHCC----CEEEEEEccCCCccceEEEEEEe
Confidence 86432 11 24555 677765 6666544 2333333 4455555
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=136.01 Aligned_cols=144 Identities=12% Similarity=0.138 Sum_probs=103.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.+|...+ ..+|+++|+|+.+++.+++|++++++.+ +.++++|+ .. +.. ...++||
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~-----~~-~~~-~~~~~fD 189 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDG-----RV-FGA-AVPEMFD 189 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCS-----TT-HHH-HSTTCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCH-----HH-hhh-hccccCC
Confidence 37999999999999999999875 4799999999999999999999999864 99999998 22 110 0246899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHHHHHc
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEWLGIC 294 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~l~~~ 294 (322)
+|++||||.....+...+.....+.+.. ...-.+..+.++..+.++|||||.+++.++. ...+.+..+++++
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~----~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~ 265 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPES----NQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETY 265 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHH----HHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHS
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhH----HHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHC
Confidence 9999999975443221111000111100 0001133578999999999999999998763 3456677788777
Q ss_pred C
Q psy7093 295 G 295 (322)
Q Consensus 295 ~ 295 (322)
+
T Consensus 266 ~ 266 (479)
T 2frx_A 266 P 266 (479)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-14 Score=128.01 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=104.6
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+++.+... .++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++|+...++.++++++++|+ .+
T Consensus 106 ~~l~~~l~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~ 178 (312)
T 3vc1_A 106 EFLMDHLGQA-GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM-----LD 178 (312)
T ss_dssp HHHHTTSCCC-CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-----TS
T ss_pred HHHHHHhccC-CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-----hc
Confidence 3455555411 134799999999999999999985 6799999999999999999999999888899999998 32
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--C--
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--D-- 282 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~-- 282 (322)
++ +..++||+|+++-.+.... ...+++.+.++|||||.+++.... .
T Consensus 179 -~~--~~~~~fD~V~~~~~l~~~~---------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 228 (312)
T 3vc1_A 179 -TP--FDKGAVTASWNNESTMYVD---------------------------LHDLFSEHSRFLKVGGRYVTITGCWNPRY 228 (312)
T ss_dssp -CC--CCTTCEEEEEEESCGGGSC---------------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTT
T ss_pred -CC--CCCCCEeEEEECCchhhCC---------------------------HHHHHHHHHHHcCCCcEEEEEEccccccc
Confidence 22 3467999999975432210 358999999999999999885421 1
Q ss_pred -------------------CHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 283 -------------------HLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 283 -------------------~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
..+.+.+++++.| |..+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG----f~~~~~~ 267 (312)
T 3vc1_A 229 GQPSKWVSQINAHFECNIHSRREYLRAMADNR----LVPHTIV 267 (312)
T ss_dssp CSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTT----EEEEEEE
T ss_pred cchhHHHHHHHhhhcCCCCCHHHHHHHHHHCC----CEEEEEE
Confidence 2456677787775 6655543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-14 Score=124.29 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=102.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccCCCcc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKH-FPKLKAIAIDQSKHACDLTEQNAVMH-NVANQLQVFHAEIDSKG 203 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~-~~~~~v~~vDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~~ 203 (322)
+..+++.+... ++.+|||+|||+|.++..+++. .|..+|+++|+++.+++.|++|+..+ + ..++++.++|+
T Consensus 85 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~---- 157 (258)
T 2pwy_A 85 ASAMVTLLDLA--PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKL---- 157 (258)
T ss_dssp HHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCG----
T ss_pred HHHHHHHcCCC--CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECch----
Confidence 34555555433 3379999999999999999998 46789999999999999999999887 7 45699999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD- 282 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~- 282 (322)
.+. + ++.++||+|++|+|.. ..+++.+.++|+|||.+++.....
T Consensus 158 -~~~-~--~~~~~~D~v~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~ 202 (258)
T 2pwy_A 158 -EEA-E--LEEAAYDGVALDLMEP-------------------------------WKVLEKAALALKPDRFLVAYLPNIT 202 (258)
T ss_dssp -GGC-C--CCTTCEEEEEEESSCG-------------------------------GGGHHHHHHHEEEEEEEEEEESCHH
T ss_pred -hhc-C--CCCCCcCEEEECCcCH-------------------------------HHHHHHHHHhCCCCCEEEEEeCCHH
Confidence 332 1 2456899999987621 157788899999999999877653
Q ss_pred CHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 283 HLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+...+.+.+++.| |..++++
T Consensus 203 ~~~~~~~~l~~~g----f~~~~~~ 222 (258)
T 2pwy_A 203 QVLELVRAAEAHP----FRLERVL 222 (258)
T ss_dssp HHHHHHHHHTTTT----EEEEEEE
T ss_pred HHHHHHHHHHHCC----CceEEEE
Confidence 4555666666654 6655443
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=123.95 Aligned_cols=135 Identities=10% Similarity=0.114 Sum_probs=96.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..+++.. |..+|+|+|+|+.+++.+.++++.. .+++++++|+ .+........++||
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~-----~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDA-----RHPHKYRMLIAMVD 149 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCT-----TCGGGGGGGCCCEE
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEccc-----CChhhhcccCCcEE
Confidence 4799999999999999999986 5689999999999999888888765 4599999998 33210012356899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-----------HHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-----------LDKI 287 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-----------~~~~ 287 (322)
+|++|+|. .+ ..+.++.++.++|+|||.+++.+.... ...
T Consensus 150 ~V~~~~~~---~~-------------------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~- 200 (233)
T 2ipx_A 150 VIFADVAQ---PD-------------------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE- 200 (233)
T ss_dssp EEEECCCC---TT-------------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH-
T ss_pred EEEEcCCC---cc-------------------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH-
Confidence 99999871 00 134678889999999999999775421 111
Q ss_pred HHHHHHcCCCCceeeEE-EecCCCCCCeE
Q psy7093 288 KEWLGICGHHMKLKLVE-NYKDFNNKDRF 315 (322)
Q Consensus 288 ~~~l~~~~~~~~~~~v~-~~~D~~g~~R~ 315 (322)
.+++++.| |..++ ..-|.+..+..
T Consensus 201 ~~~l~~~G----f~~~~~~~~~~~~~~~~ 225 (233)
T 2ipx_A 201 VKKMQQEN----MKPQEQLTLEPYERDHA 225 (233)
T ss_dssp HHTTGGGT----EEEEEEEECTTTSSSEE
T ss_pred HHHHHHCC----CceEEEEecCCccCCcE
Confidence 35556654 77766 33444444443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=132.05 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=99.0
Q ss_pred cCeEEEeCCCCcccCch----hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSE----TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~----te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+|..+.++..+.+++++ ++.++...+. .. . .+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+
T Consensus 74 ~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~-~~-~--~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar 149 (314)
T 2b2c_A 74 YGNVLVLDGIVQATERDEFSYQEMLAHLPMF-AH-P--DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAK 149 (314)
T ss_dssp TEEEEEETTEEEEESSSSSHHHHHHHHHHHH-HS-S--SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHH
T ss_pred CCEEEEECCEeecCCcchhHHHHHHHHHHHh-hC-C--CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHH
Confidence 45667777666666555 3333222211 11 1 237999999999999999999877889999999999999999
Q ss_pred HHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHH
Q psy7093 181 QNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257 (322)
Q Consensus 181 ~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~ 257 (322)
+|+... ++ ..+++++.+|+ .+.+.. ..++||+|++|++.... |.. ..
T Consensus 150 ~~~~~~~~~~~~~rv~~~~~D~-----~~~l~~--~~~~fD~Ii~d~~~~~~--------------~~~---------~l 199 (314)
T 2b2c_A 150 KFLPGMSCGFSHPKLDLFCGDG-----FEFLKN--HKNEFDVIITDSSDPVG--------------PAE---------SL 199 (314)
T ss_dssp HHCTTTSGGGGCTTEEEECSCH-----HHHHHH--CTTCEEEEEECCC--------------------------------
T ss_pred HHHHHhccccCCCCEEEEEChH-----HHHHHh--cCCCceEEEEcCCCCCC--------------cch---------hh
Confidence 998654 33 45799999998 543321 35689999999853210 000 11
Q ss_pred H-HHHHHHHhccCccCcEEEEEEcC
Q psy7093 258 I-KPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 258 ~-~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+ ..+++.+.++|+|||++++..+.
T Consensus 200 ~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 200 FGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp ----HHHHHHHHEEEEEEEEEECCC
T ss_pred hHHHHHHHHHhhcCCCeEEEEECCC
Confidence 2 57899999999999999998754
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=128.56 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=97.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..++..++.... +.+|||+|||+|..++.+++.+| +.+|+++|+|+.+++.|++|+...++.++++++.+
T Consensus 64 ~~~~~~ll~~l~~~~~-----~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g 138 (247)
T 1sui_A 64 SADEGQFLSMLLKLIN-----AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138 (247)
T ss_dssp CHHHHHHHHHHHHHTT-----CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred CHHHHHHHHHHHHhhC-----cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 5666677766655432 27999999999999999999987 78999999999999999999999998778999999
Q ss_pred cCCCcccccccCcCc----CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 198 EIDSKGQVKNLQPDL----LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 198 D~~~~~~~~~l~~~~----~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|+ .+.++... ..++||+|+++.+.. .+..+++.+.++|+|||
T Consensus 139 da-----~~~l~~l~~~~~~~~~fD~V~~d~~~~-----------------------------~~~~~l~~~~~~LkpGG 184 (247)
T 1sui_A 139 PA-----LPVLDEMIKDEKNHGSYDFIFVDADKD-----------------------------NYLNYHKRLIDLVKVGG 184 (247)
T ss_dssp CH-----HHHHHHHHHSGGGTTCBSEEEECSCST-----------------------------THHHHHHHHHHHBCTTC
T ss_pred CH-----HHHHHHHHhccCCCCCEEEEEEcCchH-----------------------------HHHHHHHHHHHhCCCCe
Confidence 98 44332100 146899999975410 15678899999999999
Q ss_pred EEEEEE
Q psy7093 274 SIFLET 279 (322)
Q Consensus 274 ~l~~e~ 279 (322)
++++.-
T Consensus 185 ~lv~d~ 190 (247)
T 1sui_A 185 VIGYDN 190 (247)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999853
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=126.12 Aligned_cols=146 Identities=18% Similarity=0.288 Sum_probs=108.3
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
++.....++.+++.+... ++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++... .+++++++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d 110 (266)
T 3ujc_A 37 SSGGLEATKKILSDIELN--ENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN---NKIIFEAND 110 (266)
T ss_dssp STTHHHHHHHHTTTCCCC--TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECC
T ss_pred ccchHHHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECc
Confidence 345556667777666543 34799999999999999999986 679999999999999999876544 469999999
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+ .+ ++ ++.++||+|+++..+... ++ .-...+++.+.++|+|||.+++.
T Consensus 111 ~-----~~-~~--~~~~~fD~v~~~~~l~~~------~~------------------~~~~~~l~~~~~~L~pgG~l~~~ 158 (266)
T 3ujc_A 111 I-----LT-KE--FPENNFDLIYSRDAILAL------SL------------------ENKNKLFQKCYKWLKPTGTLLIT 158 (266)
T ss_dssp T-----TT-CC--CCTTCEEEEEEESCGGGS------CH------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-----cc-CC--CCCCcEEEEeHHHHHHhc------Ch------------------HHHHHHHHHHHHHcCCCCEEEEE
Confidence 8 32 22 346789999997544332 11 12468999999999999999886
Q ss_pred Ec----------------------CCCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 279 TN----------------------HDHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 279 ~~----------------------~~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
.. ....+.+.+++++.| |..+++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----f~~~~~~ 204 (266)
T 3ujc_A 159 DYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACN----FKNVVSK 204 (266)
T ss_dssp EEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTT----CEEEEEE
T ss_pred EeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcC----CeEEEEE
Confidence 41 123567888888876 6666543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=125.30 Aligned_cols=140 Identities=16% Similarity=0.255 Sum_probs=102.1
Q ss_pred eecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSKHACD 177 (322)
Q Consensus 103 ~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~~al~ 177 (322)
.|++..+.+..+..+++|.+. ..+++.+.....++.+|||+|||+|.++..+++.. |..+|+++|+++.+++
T Consensus 47 ~y~d~~~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~ 123 (227)
T 2pbf_A 47 PYIDTPVYISHGVTISAPHMH---ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVN 123 (227)
T ss_dssp TTSSSCEEEETTEEECCHHHH---HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHH
T ss_pred cCCCCccccCCCCccCChHHH---HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHH
Confidence 456677777777777777644 34444443111134799999999999999999986 4579999999999999
Q ss_pred HHHHHHHHcCC----CCcEEEEEccCCCcccccccCc-CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC
Q psy7093 178 LTEQNAVMHNV----ANQLQVFHAEIDSKGQVKNLQP-DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252 (322)
Q Consensus 178 ~A~~n~~~~~l----~~~i~~~~~D~~~~~~~~~l~~-~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~ 252 (322)
.|++|+...++ .++++++++|+ .+..+. ....++||+|+++.++..
T Consensus 124 ~a~~~~~~~~~~~~~~~~v~~~~~d~-----~~~~~~~~~~~~~fD~I~~~~~~~~------------------------ 174 (227)
T 2pbf_A 124 FSLENIKRDKPELLKIDNFKIIHKNI-----YQVNEEEKKELGLFDAIHVGASASE------------------------ 174 (227)
T ss_dssp HHHHHHHHHCGGGGSSTTEEEEECCG-----GGCCHHHHHHHCCEEEEEECSBBSS------------------------
T ss_pred HHHHHHHHcCccccccCCEEEEECCh-----HhcccccCccCCCcCEEEECCchHH------------------------
Confidence 99999988773 34699999998 432200 012468999999876531
Q ss_pred ChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 253 ~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+++.+.+.|+|||.+++.++..
T Consensus 175 --------~~~~~~~~LkpgG~lv~~~~~~ 196 (227)
T 2pbf_A 175 --------LPEILVDLLAENGKLIIPIEED 196 (227)
T ss_dssp --------CCHHHHHHEEEEEEEEEEEEET
T ss_pred --------HHHHHHHhcCCCcEEEEEEccC
Confidence 2345678999999999988763
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=123.79 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+++.+.+.+.. +.+|||+|||+|.++..++...+ +++|+|+|+.+++.|+++....+ .+++++++|+
T Consensus 26 ~~~~~~l~~~~~~----~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~--- 94 (227)
T 1ve3_A 26 ETLEPLLMKYMKK----RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDA--- 94 (227)
T ss_dssp HHHHHHHHHSCCS----CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCT---
T ss_pred HHHHHHHHHhcCC----CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEECch---
Confidence 3344444444432 37999999999999999998854 99999999999999999998776 4599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCC--CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPP--YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPP--y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.+ ++ ++.++||+|+++++ +.... -...+++.+.++|+|||.+++...
T Consensus 95 --~~-~~--~~~~~~D~v~~~~~~~~~~~~--------------------------~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 95 --RK-LS--FEDKTFDYVIFIDSIVHFEPL--------------------------ELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp --TS-CC--SCTTCEEEEEEESCGGGCCHH--------------------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --hc-CC--CCCCcEEEEEEcCchHhCCHH--------------------------HHHHHHHHHHHHcCCCcEEEEEec
Confidence 33 22 24568999999988 43211 135789999999999999988653
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=134.71 Aligned_cols=135 Identities=18% Similarity=0.223 Sum_probs=99.8
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC----------------------------------
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK---------------------------------- 163 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~---------------------------------- 163 (322)
+.|-.|.+...++....... +..+||+|||||.+++.+|....+
T Consensus 182 ~Apl~e~lAa~ll~l~~~~~--~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 259 (393)
T 3k0b_A 182 SAPIKETMAAALVLLTSWHP--DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLAN 259 (393)
T ss_dssp SCSCCHHHHHHHHHHSCCCT--TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCcHHHHHHHHHHhCCCC--CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhc
Confidence 45677888888887766543 378999999999999988875322
Q ss_pred ----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 164 ----LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 164 ----~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.+|+|+|+|+.+++.|+.|+..+++.+++++.++|+ .+.. ...+||+||+||||..... ...
T Consensus 260 ~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~-----~~~~----~~~~fD~Iv~NPPYg~rl~-----~~~ 325 (393)
T 3k0b_A 260 YDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQV-----ADFQ----TEDEYGVVVANPPYGERLE-----DEE 325 (393)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCG-----GGCC----CCCCSCEEEECCCCCCSHH-----HHH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-----HhCC----CCCCCCEEEECCCCccccC-----Cch
Confidence 469999999999999999999999988899999998 4332 2358999999999975311 000
Q ss_pred hcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 240 ALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 240 ~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
+-..+|+.+-+.... -+||.+++-+++..
T Consensus 326 -------------~l~~ly~~lg~~lk~--~~g~~~~iit~~~~ 354 (393)
T 3k0b_A 326 -------------AVRQLYREMGIVYKR--MPTWSVYVLTSYEL 354 (393)
T ss_dssp -------------HHHHHHHHHHHHHHT--CTTCEEEEEECCTT
T ss_pred -------------hHHHHHHHHHHHHhc--CCCCEEEEEECCHH
Confidence 011345555555444 36999888787655
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=124.17 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=84.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA----NQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~----~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++. .++.+.++|+ .. ++ +..++
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~-----~~-~~--~~~~~ 101 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA-----SS-LS--FHDSS 101 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT-----TS-CC--SCTTC
T ss_pred CeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc-----cc-cC--CCCCc
Confidence 79999999999999999998 679999999999999999998877652 3589999998 32 22 34678
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
||+|+++..+....+. .....+++.+.++|+|||.+++.
T Consensus 102 ~D~v~~~~~l~~~~~~-----------------------~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 102 FDFAVMQAFLTSVPDP-----------------------KERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp EEEEEEESCGGGCCCH-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEcchhhcCCCH-----------------------HHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999998765543321 11347899999999999999885
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-13 Score=119.77 Aligned_cols=113 Identities=17% Similarity=0.299 Sum_probs=88.7
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
..+++.+.... +.+|||+|||+|.++..++... .+|+|+|+|+.+++.|++++...++. +++++++|+ .
T Consensus 11 ~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~-----~- 79 (239)
T 1xxl_A 11 GLMIKTAECRA--EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTA-----E- 79 (239)
T ss_dssp HHHHHHHTCCT--TCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBT-----T-
T ss_pred chHHHHhCcCC--CCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEeccc-----c-
Confidence 34455555443 3799999999999999999884 59999999999999999999888865 599999998 2
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.++ +..++||+|+++-......+ ...+++++.++|+|||.+++.
T Consensus 80 ~~~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 80 SLP--FPDDSFDIITCRYAAHHFSD--------------------------VRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp BCC--SCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC--CCCCcEEEEEECCchhhccC--------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence 232 34578999999754432221 347899999999999999884
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-14 Score=125.46 Aligned_cols=118 Identities=13% Similarity=0.251 Sum_probs=92.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.+++.+.+.+.... ++.+|||+|||+|.++..++..+|. .+|+|+|+|+.+++.|++++...+. +++++++|+
T Consensus 8 ~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~--- 81 (284)
T 3gu3_A 8 DYVSFLVNTVWKIT-KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDA--- 81 (284)
T ss_dssp HHHHHHHHTTSCCC-SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCT---
T ss_pred HHHHHHHHHHhccC-CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcch---
Confidence 45556665553321 3479999999999999999999884 8999999999999999999877654 699999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ..++||+|+++..+....+ ...+++++.++|+|||++++..
T Consensus 82 --~~-~~---~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 82 --TE-IE---LNDKYDIAICHAFLLHMTT--------------------------PETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp --TT-CC---CSSCEEEEEEESCGGGCSS--------------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred --hh-cC---cCCCeeEEEECChhhcCCC--------------------------HHHHHHHHHHHcCCCCEEEEEe
Confidence 33 32 2468999999865443322 3478999999999999998754
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=134.01 Aligned_cols=110 Identities=13% Similarity=0.224 Sum_probs=87.1
Q ss_pred eEEEeCCCCccc--CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFIP--RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 107 ~~~~v~~~~~ip--rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
..|.+.++.|+. ...++.+++++++.+... +.+|||+|||+|.+++.+|+. ..+|+|+|+|+.+++.|++|++
T Consensus 182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~---~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~ 256 (369)
T 3bt7_A 182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGS---KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIA 256 (369)
T ss_dssp CEEEEETTSCCCSBHHHHHHHHHHHHHHTTTC---CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHH
T ss_pred EEEEECCCCeecCCHHHHHHHHHHHHHHhhcC---CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHH
Confidence 678888988873 344577888888877543 268999999999999999986 5799999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCcC-------------CCCeeEEEEcCCCC
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLL-------------EQKFDLVVSNPPYV 227 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~~-------------~~~fDlIv~NPPy~ 227 (322)
.+++. +++++++|+ .+.++.... ..+||+|++|||+.
T Consensus 257 ~ng~~-~v~~~~~d~-----~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 257 ANHID-NVQIIRMAA-----EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 306 (369)
T ss_dssp HTTCC-SEEEECCCS-----HHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred HcCCC-ceEEEECCH-----HHHHHHHhhccccccccccccccCCCCEEEECcCcc
Confidence 99985 599999998 432211001 13799999999985
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-14 Score=123.70 Aligned_cols=98 Identities=12% Similarity=0.153 Sum_probs=77.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++.. +++++++|+ .+ ++ ..++||+|
T Consensus 52 ~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~-----~~-~~---~~~~fD~v 114 (263)
T 3pfg_A 52 ASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNP------DAVLHHGDM-----RD-FS---LGRRFSAV 114 (263)
T ss_dssp CEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCT------TSEEEECCT-----TT-CC---CSCCEEEE
T ss_pred CcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC------CCEEEECCh-----HH-CC---ccCCcCEE
Confidence 79999999999999999988 5689999999999999998743 489999998 33 22 25789999
Q ss_pred EEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+++. .+.... . .+-...+++.+.++|+|||.++++
T Consensus 115 ~~~~~~l~~~~------~-----------------~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 115 TCMFSSIGHLA------G-----------------QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp EECTTGGGGSC------H-----------------HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EEcCchhhhcC------C-----------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9975 432211 0 012457899999999999999985
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=124.31 Aligned_cols=106 Identities=22% Similarity=0.290 Sum_probs=88.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|++++...++. +++++.+|+ .+ ++ +..++||
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~-----~~-~~--~~~~~fD 107 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANI-----FS-LP--FEDSSFD 107 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCG-----GG-CC--SCTTCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEccc-----cc-CC--CCCCCee
Confidence 347999999999999999999988999999999999999999999988876 499999998 33 22 3467899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+|+++..+....+ ...+++.+.++|+|||++++..
T Consensus 108 ~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 108 HIFVCFVLEHLQS--------------------------PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp EEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEechhhhcCC--------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999866544332 2478899999999999998864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=125.87 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=94.2
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.++...++..+.... ++.+|||+|||+|..++.+++.++ +.+|+++|+++.+++.|++|+...++.++++++++
T Consensus 54 ~~~~~~~l~~l~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~ 128 (229)
T 2avd_A 54 TCEQAQLLANLARLI-----QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 128 (229)
T ss_dssp CHHHHHHHHHHHHHT-----TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred CHHHHHHHHHHHHhc-----CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc
Confidence 445555555544432 227999999999999999999877 78999999999999999999999988778999999
Q ss_pred cCCCcccccccCcCcC---CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPDLL---EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~---~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++.... .++||+|++|+|.. .+..+++.+.++|+|||+
T Consensus 129 d~-----~~~~~~~~~~~~~~~~D~v~~d~~~~-----------------------------~~~~~l~~~~~~L~pgG~ 174 (229)
T 2avd_A 129 PA-----LETLDELLAAGEAGTFDVAVVDADKE-----------------------------NCSAYYERCLQLLRPGGI 174 (229)
T ss_dssp CH-----HHHHHHHHHTTCTTCEEEEEECSCST-----------------------------THHHHHHHHHHHEEEEEE
T ss_pred CH-----HHHHHHHHhcCCCCCccEEEECCCHH-----------------------------HHHHHHHHHHHHcCCCeE
Confidence 98 433221001 16899999998721 155789999999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 175 lv~~ 178 (229)
T 2avd_A 175 LAVL 178 (229)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-14 Score=128.26 Aligned_cols=147 Identities=13% Similarity=0.171 Sum_probs=103.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--------CCcEEEEEccCCCcccccccC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NV--------ANQLQVFHAEIDSKGQVKNLQ 209 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l--------~~~i~~~~~D~~~~~~~~~l~ 209 (322)
+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++|+ .. ++ ..+++++.+|+ .+.+.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~-----~~~l~ 148 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDG-----FEFIK 148 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCH-----HHHHH
T ss_pred CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECch-----HHHhc
Confidence 379999999999999999998 8889999999999999999998 43 32 45799999998 44332
Q ss_pred cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHH
Q psy7093 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKI 287 (322)
Q Consensus 210 ~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~ 287 (322)
. .++||+|++|+|+..... ..+ +...+++.+.++|+|||++++..+. .+.+.+
T Consensus 149 ~---~~~fD~Ii~d~~~~~~~~--------------~~l--------~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~ 203 (281)
T 1mjf_A 149 N---NRGFDVIIADSTDPVGPA--------------KVL--------FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDEL 203 (281)
T ss_dssp H---CCCEEEEEEECCCCC-------------------T--------TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHH
T ss_pred c---cCCeeEEEECCCCCCCcc--------------hhh--------hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHH
Confidence 1 468999999998632110 000 1247888999999999999998754 344444
Q ss_pred HHHHHHcCCCCceeeEEEe----cCCCCCCeEEEEEE
Q psy7093 288 KEWLGICGHHMKLKLVENY----KDFNNKDRFVELKL 320 (322)
Q Consensus 288 ~~~l~~~~~~~~~~~v~~~----~D~~g~~R~~~~~~ 320 (322)
..+.+.... .|..+..+ ....|...|+.+.+
T Consensus 204 ~~~~~~l~~--~f~~v~~~~~~vP~~~g~~~~~~as~ 238 (281)
T 1mjf_A 204 ISAYKEMKK--VFDRVYYYSFPVIGYASPWAFLVGVK 238 (281)
T ss_dssp HHHHHHHHH--HCSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred HHHHHHHHH--HCCceEEEEEecCCCCceEEEEEeeC
Confidence 444332210 13344432 33457788888776
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-14 Score=121.12 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=95.6
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEE
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN----QLQVF 195 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~----~i~~~ 195 (322)
+-.....+.+.+.+.... +.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++...++.+ +++++
T Consensus 12 ~~~~~~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~ 89 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVN--AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF 89 (219)
T ss_dssp CHHHHHHHHHHHHHHHTT--CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEE
T ss_pred cchHHHHHHHHHHHhhcC--CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEE
Confidence 344556666767665543 379999999999999999998777899999999999999999998777654 79999
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
++|+ .. .+ ...++||+|+++-.+... +.. ....+++.+.++|+|||++
T Consensus 90 ~~d~-----~~-~~--~~~~~fD~V~~~~~l~~~------~~~------------------~~~~~l~~~~~~LkpgG~~ 137 (219)
T 3jwg_A 90 QSSL-----VY-RD--KRFSGYDAATVIEVIEHL------DEN------------------RLQAFEKVLFEFTRPQTVI 137 (219)
T ss_dssp ECCS-----SS-CC--GGGTTCSEEEEESCGGGC------CHH------------------HHHHHHHHHHTTTCCSEEE
T ss_pred eCcc-----cc-cc--cccCCCCEEEEHHHHHhC------CHH------------------HHHHHHHHHHHhhCCCEEE
Confidence 9998 22 21 235689999997543322 111 1358999999999999977
Q ss_pred EEEE
Q psy7093 276 FLET 279 (322)
Q Consensus 276 ~~e~ 279 (322)
+...
T Consensus 138 i~~~ 141 (219)
T 3jwg_A 138 VSTP 141 (219)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 6643
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=134.07 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=98.5
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-----------------------------------
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP----------------------------------- 162 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~----------------------------------- 162 (322)
+.|-.|.+...++....... +.+|||+|||||.+++.+|....
T Consensus 176 ~Apl~e~lAa~ll~~~~~~~--~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 253 (385)
T 3ldu_A 176 KAPIRETLAAGLIYLTPWKA--GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKID 253 (385)
T ss_dssp CCCCCHHHHHHHHHTSCCCT--TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCcHHHHHHHHHhhCCCC--CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence 34667788888877765543 37899999999999999887521
Q ss_pred ---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 163 ---KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 163 ---~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
..+|+|+|+|+.+++.|+.|+..+++.+++++.++|+ .+.. ...+||+||+||||..... ...
T Consensus 254 ~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~-----~~l~----~~~~~D~Iv~NPPyg~rl~-----~~~ 319 (385)
T 3ldu_A 254 NESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDA-----TQFK----SEDEFGFIITNPPYGERLE-----DKD 319 (385)
T ss_dssp CSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCG-----GGCC----CSCBSCEEEECCCCCCSHH-----HHH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-----hhcC----cCCCCcEEEECCCCcCccC-----CHH
Confidence 1579999999999999999999999887899999998 4432 2358999999999974211 000
Q ss_pred hcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 240 ALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 240 ~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
+-..+|+.+-+.... -+||.+++-+++..
T Consensus 320 -------------~l~~ly~~lg~~lk~--~~g~~~~iit~~~~ 348 (385)
T 3ldu_A 320 -------------SVKQLYKELGYAFRK--LKNWSYYLITSYED 348 (385)
T ss_dssp -------------HHHHHHHHHHHHHHT--SBSCEEEEEESCTT
T ss_pred -------------HHHHHHHHHHHHHhh--CCCCEEEEEECCHH
Confidence 012345555444443 36888888777655
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=118.56 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=88.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|+..+++ +++++++|+ .+ + .++||+
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~-----~~-~-----~~~~D~ 115 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDV-----SE-F-----NSRVDI 115 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCG-----GG-C-----CCCCSE
T ss_pred cCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECch-----HH-c-----CCCCCE
Confidence 379999999999999999987 445899999999999999999988876 599999998 33 2 248999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cCCCHHHHHHHHHHcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NHDHLDKIKEWLGICG 295 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~~~~~~~~~~l~~~~ 295 (322)
|++||||.....- . ...+++.+.+.+ ||.+++.+ .....+.+.+.+.+.|
T Consensus 116 v~~~~p~~~~~~~----------------------~--~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g 166 (207)
T 1wy7_A 116 VIMNPPFGSQRKH----------------------A--DRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHG 166 (207)
T ss_dssp EEECCCCSSSSTT----------------------T--THHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTT
T ss_pred EEEcCCCccccCC----------------------c--hHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCC
Confidence 9999999864320 0 135677777777 55554433 3344566777787776
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=122.65 Aligned_cols=133 Identities=15% Similarity=0.179 Sum_probs=94.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEE
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA---NQLQVF 195 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~---~~i~~~ 195 (322)
+..++.+.+.+.+.+.... +.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...+.. .++.+.
T Consensus 39 ~~~~~~~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 114 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQHG--CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE 114 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTT--CCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE
T ss_pred cchHHHHHHHHHHHhcccC--CCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEe
Confidence 3445667777777776543 379999999999999999998 569999999999999999987554322 257888
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEc-CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSN-PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~N-PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
.+|+ .......+..++||+|+++ ..+....+.. .+.+....+++++.++|+|||+
T Consensus 115 ~~d~-----~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~-------------------~~~~~~~~~l~~~~~~LkpgG~ 170 (293)
T 3thr_A 115 EANW-----LTLDKDVPAGDGFDAVICLGNSFAHLPDSK-------------------GDQSEHRLALKNIASMVRPGGL 170 (293)
T ss_dssp ECCG-----GGHHHHSCCTTCEEEEEECTTCGGGSCCSS-------------------SSSHHHHHHHHHHHHTEEEEEE
T ss_pred ecCh-----hhCccccccCCCeEEEEEcChHHhhcCccc-------------------cCHHHHHHHHHHHHHHcCCCeE
Confidence 9987 3211000245789999996 4433222110 0112256899999999999999
Q ss_pred EEEEE
Q psy7093 275 IFLET 279 (322)
Q Consensus 275 l~~e~ 279 (322)
+++.+
T Consensus 171 l~~~~ 175 (293)
T 3thr_A 171 LVIDH 175 (293)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99865
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=136.99 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=105.2
Q ss_pred cccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-------------CCCEEEEEeCCHHHHHHHHHH
Q psy7093 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-------------PKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 116 ~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-------------~~~~v~~vDis~~al~~A~~n 182 (322)
++|++ +++.+++.+... ++.+|+|+|||||.+++.+++.+ +..+++|+|+++.+++.|+.|
T Consensus 154 yTP~~----v~~~mv~~l~~~--~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~n 227 (445)
T 2okc_A 154 FTPRP----LIQAMVDCINPQ--MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 227 (445)
T ss_dssp CCCHH----HHHHHHHHHCCC--TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred cCcHH----HHHHHHHHhCCC--CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHH
Confidence 44654 444555555443 23689999999999999998763 346799999999999999999
Q ss_pred HHHcCCCC-cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 183 AVMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 183 ~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
+..+++.. ++.+.++|. +... ...+||+|++||||........- ....+. .+..+.. ...+
T Consensus 228 l~l~g~~~~~~~i~~gD~-----l~~~----~~~~fD~Iv~NPPf~~~~~~~~~---~~~~~~--~~~~~~~----~~~f 289 (445)
T 2okc_A 228 LYLHGIGTDRSPIVCEDS-----LEKE----PSTLVDVILANPPFGTRPAGSVD---INRPDF--YVETKNN----QLNF 289 (445)
T ss_dssp HHHTTCCSSCCSEEECCT-----TTSC----CSSCEEEEEECCCSSCCCTTCCC---CCCTTS--SSCCSCH----HHHH
T ss_pred HHHhCCCcCCCCEeeCCC-----CCCc----ccCCcCEEEECCCCCCcccccch---hhHhhc--CCCCcch----HHHH
Confidence 99888752 578899998 4432 23489999999999875543210 000000 1111222 2367
Q ss_pred HHHHhccCccCcEEEEEEcC------CCHHHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNH------DHLDKIKEWLGI 293 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~------~~~~~~~~~l~~ 293 (322)
++.+.++|+|||.+++.++. .+...+++.+.+
T Consensus 290 l~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~ 327 (445)
T 2okc_A 290 LQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ 327 (445)
T ss_dssp HHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHh
Confidence 88888999999999887743 234567775543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=121.52 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=85.5
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+.+.+... ++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|+++.. ..+++++++|+ . .
T Consensus 35 ~l~~~~~~~--~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~-----~-~ 101 (253)
T 3g5l_A 35 ELKKMLPDF--NQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAI-----E-D 101 (253)
T ss_dssp HHHTTCCCC--TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCG-----G-G
T ss_pred HHHHhhhcc--CCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcch-----h-h
Confidence 344444433 347999999999999999999833 399999999999999998765 34699999998 3 2
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
++ +..++||+|+++-.+....+ ...+++.+.++|+|||.+++.+
T Consensus 102 ~~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 102 IA--IEPDAYNVVLSSLALHYIAS--------------------------FDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp CC--CCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CCCCCeEEEEEchhhhhhhh--------------------------HHHHHHHHHHHcCCCcEEEEEe
Confidence 32 34678999999765433221 3589999999999999999864
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=134.59 Aligned_cols=121 Identities=11% Similarity=0.173 Sum_probs=92.4
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-------HcCC-CCc
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV-------MHNV-ANQ 191 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~-------~~~l-~~~ 191 (322)
+.....+..+++.+.... +.+|||||||+|.+++.+|...+..+|+|+|+|+.+++.|++|++ .+++ ..+
T Consensus 156 Et~~~~i~~il~~l~l~~--gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r 233 (438)
T 3uwp_A 156 ETSFDLVAQMIDEIKMTD--DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 233 (438)
T ss_dssp GTHHHHHHHHHHHHCCCT--TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred CCCHHHHHHHHHhcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344566777777776543 379999999999999999988776689999999999999998753 3465 357
Q ss_pred EEEEEccCCCcccccccCcCcCC--CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLE--QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~--~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L 269 (322)
++|+++|+ .+. + +.. ..||+|++|++|... + ....+.+..+.|
T Consensus 234 Vefi~GD~-----~~l-p--~~d~~~~aDVVf~Nn~~F~p--------d-------------------l~~aL~Ei~RvL 278 (438)
T 3uwp_A 234 YTLERGDF-----LSE-E--WRERIANTSVIFVNNFAFGP--------E-------------------VDHQLKERFANM 278 (438)
T ss_dssp EEEEECCT-----TSH-H--HHHHHHTCSEEEECCTTCCH--------H-------------------HHHHHHHHHTTS
T ss_pred eEEEECcc-----cCC-c--cccccCCccEEEEcccccCc--------h-------------------HHHHHHHHHHcC
Confidence 99999999 322 1 111 469999999987531 1 235667788999
Q ss_pred ccCcEEEE
Q psy7093 270 KPNGSIFL 277 (322)
Q Consensus 270 k~gG~l~~ 277 (322)
||||.+++
T Consensus 279 KPGGrIVs 286 (438)
T 3uwp_A 279 KEGGRIVS 286 (438)
T ss_dssp CTTCEEEE
T ss_pred CCCcEEEE
Confidence 99999987
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=133.01 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=84.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCcEEEEEccCCCcccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH---------------NVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~---------------~l~~~i~~~~~D~~~~~~~ 205 (322)
.+|||+|||+|.+++.++++.++.+|+++|+++.+++.+++|++.+ ++.+ ++++++|+ .
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da-----~ 122 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDA-----N 122 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCH-----H
T ss_pred CEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcH-----H
Confidence 7999999999999999999988889999999999999999999998 7765 99999998 4
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+.+.. ..++||+|+.|||+.. ..++..+.+.|++||++++.+
T Consensus 123 ~~~~~--~~~~fD~I~lDP~~~~------------------------------~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 123 RLMAE--RHRYFHFIDLDPFGSP------------------------------MEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHH--STTCEEEEEECCSSCC------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHh--ccCCCCEEEeCCCCCH------------------------------HHHHHHHHHhcCCCCEEEEEe
Confidence 33221 1357999999987531 257888889999999888754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-13 Score=117.25 Aligned_cols=116 Identities=18% Similarity=0.326 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+.+.+.+.+... .+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++...+ .+++++++|+
T Consensus 21 ~~~~~~~~~~~~~~----~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~--- 88 (243)
T 3d2l_A 21 PEWVAWVLEQVEPG----KRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDM--- 88 (243)
T ss_dssp HHHHHHHHHHSCTT----CEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCG---
T ss_pred HHHHHHHHHHcCCC----CeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcCh---
Confidence 45566666665432 79999999999999999877 799999999999999999988766 3589999998
Q ss_pred ccccccCcCcCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ..++||+|+++. ....... .+-...+++.+.++|+|||.+++++
T Consensus 89 --~~-~~---~~~~fD~v~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 89 --RE-LE---LPEPVDAITILCDSLNYLQT-----------------------EADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp --GG-CC---CSSCEEEEEECTTGGGGCCS-----------------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --hh-cC---CCCCcCEEEEeCCchhhcCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 33 22 236899999975 3221100 0124578999999999999998853
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-15 Score=131.40 Aligned_cols=121 Identities=13% Similarity=0.213 Sum_probs=95.8
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.+++..++..++.... +.+|||+|||+|..++.+|+.+| +.+|+++|+++.+++.|++|++..++.++++++++
T Consensus 45 ~~~~~~~l~~l~~~~~-----~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g 119 (242)
T 3r3h_A 45 APEQAQFMQMLIRLTR-----AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119 (242)
T ss_dssp CHHHHHHHHHHHHHHT-----CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEES
T ss_pred CHHHHHHHHHHHhhcC-----cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 4556666666555432 27999999999999999999886 78999999999999999999999999888999999
Q ss_pred cCCCcccccccCcCc---CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPDL---LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~~---~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++... ..++||+|+++.+.. .+..+++.+.++|+|||+
T Consensus 120 da-----~~~l~~~~~~~~~~~fD~V~~d~~~~-----------------------------~~~~~l~~~~~~LkpGG~ 165 (242)
T 3r3h_A 120 PA-----LDTLHSLLNEGGEHQFDFIFIDADKT-----------------------------NYLNYYELALKLVTPKGL 165 (242)
T ss_dssp CH-----HHHHHHHHHHHCSSCEEEEEEESCGG-----------------------------GHHHHHHHHHHHEEEEEE
T ss_pred CH-----HHHHHHHhhccCCCCEeEEEEcCChH-----------------------------HhHHHHHHHHHhcCCCeE
Confidence 98 44332100 036899999986511 145788899999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 166 lv~d 169 (242)
T 3r3h_A 166 IAID 169 (242)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=145.89 Aligned_cols=204 Identities=13% Similarity=0.066 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCC-CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHH
Q psy7093 78 QITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPP-VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITIS 156 (322)
Q Consensus 78 ~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~-~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~ 156 (322)
-++.+..+..+|..+.++...+.. | ...-....| .++|++-...+++.+...+......+.+|||+|||||.+++.
T Consensus 262 LLe~~~dL~~~r~~~DdL~ell~e--y-a~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIa 338 (878)
T 3s1s_A 262 LLSSLNDLGRRILTGDELAELIHD--I-ATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLAT 338 (878)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHH--H-HTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHH
T ss_pred HHHHHHHHhhccCchHHHHHHHHH--H-HHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHH
Confidence 345555666666655554333222 1 111122233 345655555555442222332211347999999999999999
Q ss_pred HHHhCC---CCEEEEEeCCHHHHHHH--HHHHHHcCCCC---cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCC
Q psy7093 157 LLKHFP---KLKAIAIDQSKHACDLT--EQNAVMHNVAN---QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVP 228 (322)
Q Consensus 157 la~~~~---~~~v~~vDis~~al~~A--~~n~~~~~l~~---~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~ 228 (322)
++..++ ..+++|+|+++.+++.| +.|+..+++.. ...+...|+ +... ....++||+||+||||..
T Consensus 339 aA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~-----L~~~--~~~~~kFDVVIgNPPYg~ 411 (878)
T 3s1s_A 339 VSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDV-----CSLN--PEDFANVSVVVMNPPYVS 411 (878)
T ss_dssp HHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCG-----GGCC--GGGGTTEEEEEECCBCCS
T ss_pred HHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecch-----hccc--ccccCCCCEEEECCCccc
Confidence 998875 35899999999999999 77765532211 135555665 3311 113468999999999976
Q ss_pred CCCCCCCChhhhcc-------cccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-------HHHHHHHHHHc
Q psy7093 229 SLDIPKLEPEIALY-------EDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-------LDKIKEWLGIC 294 (322)
Q Consensus 229 ~~~~~~l~~~v~~~-------ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-------~~~~~~~l~~~ 294 (322)
..... .....+ .|... ..+.++.+.+..+++.+.++|++||.+.+.++..- ...+++.+.+.
T Consensus 412 ~~~~~---~e~kd~~~r~~~g~p~~p-~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~ 487 (878)
T 3s1s_A 412 GVTDP---AIKRKFAHKIIQLTGNRP-QTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGN 487 (878)
T ss_dssp SCCCH---HHHHHHHHHHHHHHSSCC-SSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTT
T ss_pred cccch---hhhhhHHHHhhhhccccc-cccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhC
Confidence 44321 111111 11111 12234567889999999999999999999886422 46678877665
Q ss_pred C
Q psy7093 295 G 295 (322)
Q Consensus 295 ~ 295 (322)
.
T Consensus 488 ~ 488 (878)
T 3s1s_A 488 F 488 (878)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=123.14 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=90.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
.++.+++.+... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++..+++++.+|+
T Consensus 52 ~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~----- 123 (287)
T 1kpg_A 52 KIDLALGKLGLQ--PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW----- 123 (287)
T ss_dssp HHHHHHTTTTCC--TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG-----
T ss_pred HHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh-----
Confidence 445555555433 34799999999999999999765 4599999999999999999999888877899999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
. .+ + ++||+|+++-.+..... .....+++.+.++|||||.+++..
T Consensus 124 ~-~~----~-~~fD~v~~~~~l~~~~~------------------------~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 124 E-QF----D-EPVDRIVSIGAFEHFGH------------------------ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp G-GC----C-CCCSEEEEESCGGGTCT------------------------TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred h-hC----C-CCeeEEEEeCchhhcCh------------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 22 2 68999999754432210 014588999999999999998854
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=125.45 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=96.4
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.+++..++..+..... +.+|||+|||+|..++.+++.+| +.+|+++|+++.+++.|++|+...++.++++++.+
T Consensus 55 ~~~~~~~l~~l~~~~~-----~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g 129 (237)
T 3c3y_A 55 SPLAGQLMSFVLKLVN-----AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES 129 (237)
T ss_dssp CHHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred CHHHHHHHHHHHHhhC-----CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 4566666666555432 27999999999999999999987 78999999999999999999999998878999999
Q ss_pred cCCCcccccccCcC----cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 198 EIDSKGQVKNLQPD----LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 198 D~~~~~~~~~l~~~----~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|+ .+.++.. ...++||+|+++.+. ..+..+++.+.++|+|||
T Consensus 130 da-----~~~l~~l~~~~~~~~~fD~I~~d~~~-----------------------------~~~~~~l~~~~~~L~pGG 175 (237)
T 3c3y_A 130 DA-----MLALDNLLQGQESEGSYDFGFVDADK-----------------------------PNYIKYHERLMKLVKVGG 175 (237)
T ss_dssp CH-----HHHHHHHHHSTTCTTCEEEEEECSCG-----------------------------GGHHHHHHHHHHHEEEEE
T ss_pred CH-----HHHHHHHHhccCCCCCcCEEEECCch-----------------------------HHHHHHHHHHHHhcCCCe
Confidence 98 4433210 014689999997431 015688999999999999
Q ss_pred EEEEEE
Q psy7093 274 SIFLET 279 (322)
Q Consensus 274 ~l~~e~ 279 (322)
++++..
T Consensus 176 ~lv~d~ 181 (237)
T 3c3y_A 176 IVAYDN 181 (237)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 999864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=130.92 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=83.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------------------------
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA------------------------------ 189 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~------------------------------ 189 (322)
+.+|||+|||+|.+++.++..++..+|+|+|+|+.+++.|++|+...+..
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 47999999999999999999998899999999999999999987654422
Q ss_pred ---------------------------CcEEEEEccCCCcccccccCc--CcCCCCeeEEEEcCCCCCCCCCCCCChhhh
Q psy7093 190 ---------------------------NQLQVFHAEIDSKGQVKNLQP--DLLEQKFDLVVSNPPYVPSLDIPKLEPEIA 240 (322)
Q Consensus 190 ---------------------------~~i~~~~~D~~~~~~~~~l~~--~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~ 240 (322)
++++|.++|+ ...... .+..++||+|+|+...... .
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~-----~~~~~~~~~~~~~~fD~I~~~~vl~~i------h---- 191 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNY-----VLDRDDLVEAQTPEYDVVLCLSLTKWV------H---- 191 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCC-----CCSSHHHHTTCCCCEEEEEEESCHHHH------H----
T ss_pred cchhhhccCccccccccccccccccccccceEEeccc-----ccCccccccccCCCcCEEEEChHHHHh------h----
Confidence 5799999998 322100 1245789999996432100 0
Q ss_pred cccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 241 LYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 241 ~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|. .+.+-...+++.+.++|+|||+++++.
T Consensus 192 -------l~---~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 192 -------LN---WGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp -------HH---HHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred -------hc---CCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 00 011235689999999999999999975
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=121.60 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=83.7
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
.+.+++.+.... ++.+|||+|||+|.++..++... .+|+|+|+|+.+++.|+++... +++++++|+ .
T Consensus 30 ~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~-----~ 96 (250)
T 2p7i_A 30 HPFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKD-----GITYIHSRF-----E 96 (250)
T ss_dssp HHHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCG-----G
T ss_pred HHHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccH-----H
Confidence 344444444221 23689999999999999999874 4799999999999999987542 599999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh-ccCccCcEEEEEEc
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS-NYLKPNGSIFLETN 280 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~-~~Lk~gG~l~~e~~ 280 (322)
+. ...++||+|+++-......+ ...+++++. ++|||||.+++.+.
T Consensus 97 ~~----~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 97 DA----QLPRRYDNIVLTHVLEHIDD--------------------------PVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp GC----CCSSCEEEEEEESCGGGCSS--------------------------HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred Hc----CcCCcccEEEEhhHHHhhcC--------------------------HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 32 14578999999643322111 247899999 99999999999763
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-14 Score=126.97 Aligned_cols=112 Identities=12% Similarity=0.217 Sum_probs=85.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM--HNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~--~~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++|+.. .++ ..+++++.+|+ .+.++. ..++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da-----~~~l~~--~~~~ 168 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG-----FEFMKQ--NQDA 168 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH-----HHHHHT--CSSC
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH-----HHHHhh--CCCC
Confidence 4799999999999999999987778999999999999999999765 233 45799999998 443321 3468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
||+|++|+|...... .. ..+..+++.+.++|+|||++++..+
T Consensus 169 fD~Ii~d~~~~~~~~--------------~~--------l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 169 FDVIITDSSDPMGPA--------------ES--------LFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EEEEEEECC---------------------------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEECCCCCCCcc--------------hh--------hhHHHHHHHHHhccCCCeEEEEecC
Confidence 999999987532110 00 0134788999999999999999874
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-13 Score=123.09 Aligned_cols=154 Identities=12% Similarity=0.209 Sum_probs=113.6
Q ss_pred HHHHHHHhcc--CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 126 IDIITDKLES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 126 v~~i~~~~~~--~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
+..+++.+.. . ++.+|||+|||+|.++..+++.+|+.+++++|++ .+++.|++++...++.++++++.+|+
T Consensus 152 ~~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~---- 224 (335)
T 2r3s_A 152 AQLIAQLVNENKI--EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSA---- 224 (335)
T ss_dssp HHHHHHHHTC--C--CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCT----
T ss_pred HHHHHHhcccccC--CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccc----
Confidence 3445555543 2 2379999999999999999999999999999999 99999999999888888899999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEcCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETNHD 282 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~~~ 282 (322)
++. + + .+.||+|+++-..+... . +....+++++.+.|+|||.+++ +....
T Consensus 225 -~~~-~--~-~~~~D~v~~~~~l~~~~------~------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 225 -FEV-D--Y-GNDYDLVLLPNFLHHFD------V------------------ATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp -TTS-C--C-CSCEEEEEEESCGGGSC------H------------------HHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred -ccC-C--C-CCCCcEEEEcchhccCC------H------------------HHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 432 1 1 23499999954433211 1 1145899999999999997765 33211
Q ss_pred --------------------------CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 283 --------------------------HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 283 --------------------------~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
..+.+.+++++.| |..+++. +..+..+++.+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aG----f~~~~~~-~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 276 SDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAG----FSHSQLH-SLPTTQQQVIVAY 334 (335)
T ss_dssp TTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTT----CSEEEEE-CCTTSSSEEEEEE
T ss_pred CCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCC----CCeeeEE-ECCCCceeEEEec
Confidence 2566778888886 6777765 5666777777653
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-12 Score=123.29 Aligned_cols=142 Identities=13% Similarity=0.230 Sum_probs=111.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.++++++.+|+ ++.+ +. .||+
T Consensus 203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~-----~~~~----p~-~~D~ 271 (369)
T 3gwz_A 203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDF-----FETI----PD-GADV 271 (369)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT-----TTCC----CS-SCSE
T ss_pred CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCC-----CCCC----CC-CceE
Confidence 37999999999999999999999999999999 999999999999988888999999999 5333 23 7999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-Ec--C---------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-TN--H--------------- 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~~--~--------------- 281 (322)
|+++-..+... .+ -..++++++.+.|+|||.+++. .- .
T Consensus 272 v~~~~vlh~~~------d~------------------~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~ 327 (369)
T 3gwz_A 272 YLIKHVLHDWD------DD------------------DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLV 327 (369)
T ss_dssp EEEESCGGGSC------HH------------------HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHH
T ss_pred EEhhhhhccCC------HH------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHh
Confidence 99965443221 11 1347999999999999998773 21 1
Q ss_pred ------CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 282 ------DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 282 ------~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
...++..+++++.| |..++++....+...++.+++
T Consensus 328 ~~~g~~~t~~e~~~ll~~aG----f~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 328 LVGGAERSESEFAALLEKSG----LRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHSCCCBCHHHHHHHHHTTT----EEEEEEEECSSSSEEEEEEEE
T ss_pred hcCCccCCHHHHHHHHHHCC----CeEEEEEECCCCCcEEEEEEe
Confidence 22566778888875 899998875566667777665
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=117.73 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=89.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.++..+++.+... ++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++|+..+++. ++++.++|+
T Consensus 64 ~~~~~~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~---- 134 (210)
T 3lbf_A 64 YMVARMTELLELT--PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDG---- 134 (210)
T ss_dssp HHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG----
T ss_pred HHHHHHHHhcCCC--CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCc----
Confidence 4555666666544 3479999999999999999998 689999999999999999999998876 599999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+... ..++||+|+++.+..... ..+.+.|+|||++++.++.
T Consensus 135 -~~~~~---~~~~~D~i~~~~~~~~~~--------------------------------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 135 -WQGWQ---ARAPFDAIIVTAAPPEIP--------------------------------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp -GGCCG---GGCCEEEEEESSBCSSCC--------------------------------THHHHTEEEEEEEEEEECS
T ss_pred -ccCCc---cCCCccEEEEccchhhhh--------------------------------HHHHHhcccCcEEEEEEcC
Confidence 44332 356899999975432211 1357899999999999877
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=125.41 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMH-NVANQLQVFHAEID 200 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~ 200 (322)
..+.+.+...... ++.+|||+|||+|.++..++..+ +..+|+|+|+|+.+++.|++++... +...+++++++|+
T Consensus 23 ~~~~~~l~~~~~~---~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~- 98 (299)
T 3g5t_A 23 SDFYKMIDEYHDG---ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS- 98 (299)
T ss_dssp HHHHHHHHHHCCS---CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT-
T ss_pred HHHHHHHHHHhcC---CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH-
Confidence 4455666555432 23799999999999999999876 7899999999999999999999886 4456799999998
Q ss_pred CcccccccCc----CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 201 SKGQVKNLQP----DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 201 ~~~~~~~l~~----~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
.+ ++. .+..++||+|+++...+.. + ...+++++.++|+|||.++
T Consensus 99 ----~~-~~~~~~~~~~~~~fD~V~~~~~l~~~-~--------------------------~~~~l~~~~~~LkpgG~l~ 146 (299)
T 3g5t_A 99 ----DD-FKFLGADSVDKQKIDMITAVECAHWF-D--------------------------FEKFQRSAYANLRKDGTIA 146 (299)
T ss_dssp ----TC-CGGGCTTTTTSSCEEEEEEESCGGGS-C--------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred ----Hh-CCccccccccCCCeeEEeHhhHHHHh-C--------------------------HHHHHHHHHHhcCCCcEEE
Confidence 22 211 0112789999998654433 2 4589999999999999998
Q ss_pred E
Q psy7093 277 L 277 (322)
Q Consensus 277 ~ 277 (322)
+
T Consensus 147 i 147 (299)
T 3g5t_A 147 I 147 (299)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.7e-13 Score=114.40 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=96.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++. .+++++++|+ .+ ++ +..++||+|
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~-----~~-~~--~~~~~fD~v 106 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH------PSVTFHHGTI-----TD-LS--DSPKRWAGL 106 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC------TTSEEECCCG-----GG-GG--GSCCCEEEE
T ss_pred CeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcc-----cc-cc--cCCCCeEEE
Confidence 78999999999999999988 679999999999999999872 2589999998 32 22 346789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----------------CCH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----------------DHL 284 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----------------~~~ 284 (322)
+++..+.... .+ ....+++.+.++|+|||.+++.+.. ...
T Consensus 107 ~~~~~l~~~~------~~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (203)
T 3h2b_A 107 LAWYSLIHMG------PG------------------ELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPL 162 (203)
T ss_dssp EEESSSTTCC------TT------------------THHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCH
T ss_pred EehhhHhcCC------HH------------------HHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCH
Confidence 9975543321 00 1458999999999999999987632 237
Q ss_pred HHHHHHHHHcCCCCceeeEEEec
Q psy7093 285 DKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
+.+.+++++.| |..+.+..
T Consensus 163 ~~~~~~l~~~G----f~~~~~~~ 181 (203)
T 3h2b_A 163 PELAQALETAG----FQVTSSHW 181 (203)
T ss_dssp HHHHHHHHHTT----EEEEEEEE
T ss_pred HHHHHHHHHCC----CcEEEEEe
Confidence 88999999986 67666553
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=123.76 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=95.5
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|.+..++..+..... +.+|||+|||+|..++.+++.+| +.+|+++|+|+.+++.|++|+...++.++++++.+
T Consensus 57 ~~~~~~~l~~l~~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~ 131 (232)
T 3cbg_A 57 SPEQAQFLGLLISLTG-----AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG 131 (232)
T ss_dssp CHHHHHHHHHHHHHHT-----CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred CHHHHHHHHHHHHhcC-----CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 5666666666554332 27899999999999999999887 68999999999999999999999888778999999
Q ss_pred cCCCcccccccCcC-cCC--CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPD-LLE--QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~-~~~--~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++.. ... ++||+|+++.+.. .+..+++.+.++|+|||+
T Consensus 132 d~-----~~~l~~l~~~~~~~~fD~V~~d~~~~-----------------------------~~~~~l~~~~~~LkpgG~ 177 (232)
T 3cbg_A 132 PA-----LATLEQLTQGKPLPEFDLIFIDADKR-----------------------------NYPRYYEIGLNLLRRGGL 177 (232)
T ss_dssp CH-----HHHHHHHHTSSSCCCEEEEEECSCGG-----------------------------GHHHHHHHHHHTEEEEEE
T ss_pred CH-----HHHHHHHHhcCCCCCcCEEEECCCHH-----------------------------HHHHHHHHHHHHcCCCeE
Confidence 97 4322210 012 6899999975410 156789999999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 178 lv~~ 181 (232)
T 3cbg_A 178 MVID 181 (232)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-13 Score=116.25 Aligned_cols=146 Identities=19% Similarity=0.298 Sum_probs=103.8
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++.+.... +.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++ .++.+...|+ .+.
T Consensus 43 ~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~-----~~~ 106 (227)
T 3e8s_A 43 AILLAILGRQ--PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-------GAGEVHLASY-----AQL 106 (227)
T ss_dssp HHHHHHHHTC--CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-------CSSCEEECCH-----HHH
T ss_pred HHHHHhhcCC--CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-------cccccchhhH-----Hhh
Confidence 3444444332 379999999999999999988 67999999999999999877 2367778887 221
Q ss_pred cCc-CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-----
Q psy7093 208 LQP-DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----- 281 (322)
Q Consensus 208 l~~-~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----- 281 (322)
... .....+||+|+++..+. ..+ ...+++.+.++|+|||++++....
T Consensus 107 ~~~~~~~~~~fD~v~~~~~l~-~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 159 (227)
T 3e8s_A 107 AEAKVPVGKDYDLICANFALL-HQD--------------------------IIELLSAMRTLLVPGGALVIQTLHPWSVA 159 (227)
T ss_dssp HTTCSCCCCCEEEEEEESCCC-SSC--------------------------CHHHHHHHHHTEEEEEEEEEEECCTTTTC
T ss_pred cccccccCCCccEEEECchhh-hhh--------------------------HHHHHHHHHHHhCCCeEEEEEecCccccC
Confidence 000 11345699999987765 221 237899999999999999986531
Q ss_pred ---------------------------CCHHHHHHHHHHcCCCCceeeEEEecC-CCC----CCeEEEEEE
Q psy7093 282 ---------------------------DHLDKIKEWLGICGHHMKLKLVENYKD-FNN----KDRFVELKL 320 (322)
Q Consensus 282 ---------------------------~~~~~~~~~l~~~~~~~~~~~v~~~~D-~~g----~~R~~~~~~ 320 (322)
...+.+.+++++.| |..+++... ..+ ...+++++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 160 DGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG----LRLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp TTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT----EEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred ccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC----CeEEEEecCCCCCCCCceeEEEEeec
Confidence 15688999999986 777776542 222 245666665
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=125.98 Aligned_cols=120 Identities=13% Similarity=0.219 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEccC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA--NQLQVFHAEI 199 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~--~~i~~~~~D~ 199 (322)
....+..+++.+... +.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++. .+++++++|+
T Consensus 68 ~~~~~~~~~~~~~~~---~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~ 142 (299)
T 3g2m_A 68 GTSEAREFATRTGPV---SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM 142 (299)
T ss_dssp CHHHHHHHHHHHCCC---CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT
T ss_pred ccHHHHHHHHhhCCC---CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch
Confidence 355566666666543 258999999999999999988 678999999999999999998876532 4699999998
Q ss_pred CCcccccccCcCcCCCCeeEEEEc-CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSN-PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~N-PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.+ ++ ..++||+|++. ..+.. +++ +....+++.+.++|+|||.+++.
T Consensus 143 -----~~-~~---~~~~fD~v~~~~~~~~~------~~~------------------~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 143 -----SA-FA---LDKRFGTVVISSGSINE------LDE------------------ADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp -----TB-CC---CSCCEEEEEECHHHHTT------SCH------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----hc-CC---cCCCcCEEEECCccccc------CCH------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 33 32 25789999863 11111 111 11458999999999999999997
Q ss_pred E
Q psy7093 279 T 279 (322)
Q Consensus 279 ~ 279 (322)
+
T Consensus 190 ~ 190 (299)
T 3g2m_A 190 L 190 (299)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-13 Score=118.24 Aligned_cols=136 Identities=14% Similarity=0.189 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+...+.. +.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++. ...+++++++|+
T Consensus 41 ~~~~~~l~~~~~~----~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~--- 107 (242)
T 3l8d_A 41 STIIPFFEQYVKK----EAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDL--- 107 (242)
T ss_dssp TTHHHHHHHHSCT----TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBT---
T ss_pred HHHHHHHHHHcCC----CCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcch---
Confidence 3455556555543 379999999999999999998 679999999999999998774 234699999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH- 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~- 281 (322)
.+ ++ ++.++||+|+++..+....+ ...+++.+.++|+|||.+++....
T Consensus 108 --~~-~~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 108 --SS-LP--FENEQFEAIMAINSLEWTEE--------------------------PLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp --TB-CS--SCTTCEEEEEEESCTTSSSC--------------------------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred --hc-CC--CCCCCccEEEEcChHhhccC--------------------------HHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 32 22 34678999999765543221 347899999999999999987621
Q ss_pred ---------------------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 282 ---------------------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 282 ---------------------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
.....+.+++++.| |..+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----f~~~~~~ 198 (242)
T 3l8d_A 157 TAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQG----FKVVDGI 198 (242)
T ss_dssp TCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTT----EEEEEEE
T ss_pred cchhhhhhhhhhccccccccCCCHHHHHHHHHHcC----CEEEEee
Confidence 23567889999986 6766544
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=121.67 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=97.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++...+ ..++.++++|+ .+ ++ ...++||+
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~-----~~-~~--~~~~~fD~ 149 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGL-----QD-FT--PEPDSYDV 149 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCG-----GG-CC--CCSSCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcCh-----hh-cC--CCCCCEEE
Confidence 4799999999999999998875 5699999999999999999987664 23589999998 32 22 23568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-C--------------CCH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-H--------------DHL 284 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~--------------~~~ 284 (322)
|+++-.+.. ++. ..+..+++.+.++|+|||.+++... . ...
T Consensus 150 v~~~~~l~~------~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 205 (241)
T 2ex4_A 150 IWIQWVIGH------LTD------------------QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDL 205 (241)
T ss_dssp EEEESCGGG------SCH------------------HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBH
T ss_pred EEEcchhhh------CCH------------------HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCH
Confidence 999743321 111 1145799999999999999988432 1 147
Q ss_pred HHHHHHHHHcCCCCceeeEEEe
Q psy7093 285 DKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+.+.+++++.| |..+++.
T Consensus 206 ~~~~~~l~~aG----f~~~~~~ 223 (241)
T 2ex4_A 206 DVVRRIICSAG----LSLLAEE 223 (241)
T ss_dssp HHHHHHHHHTT----CCEEEEE
T ss_pred HHHHHHHHHcC----CeEEEee
Confidence 88999999987 5655543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-13 Score=123.85 Aligned_cols=142 Identities=16% Similarity=0.257 Sum_probs=108.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.++++++.+|+ ++.++ . .||+
T Consensus 183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~~----~-~~D~ 251 (374)
T 1qzz_A 183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF-----FKPLP----V-TADV 251 (374)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT-----TSCCS----C-CEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCC-----CCcCC----C-CCCE
Confidence 47999999999999999999999999999999 999999999999988887899999999 54332 2 4999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EE--c--C-------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ET--N--H------------- 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~--~--~------------- 281 (322)
|+++..++... .. ....+++++.+.|+|||.+++ +. . .
T Consensus 252 v~~~~vl~~~~------~~------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~ 307 (374)
T 1qzz_A 252 VLLSFVLLNWS------DE------------------DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLR 307 (374)
T ss_dssp EEEESCGGGSC------HH------------------HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHH
T ss_pred EEEeccccCCC------HH------------------HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchH
Confidence 99976554321 11 134789999999999998765 43 1 1
Q ss_pred ---------CCHHHHHHHHHHcCCCCceeeEEEecCCCCCC-----eEEEEEEc
Q psy7093 282 ---------DHLDKIKEWLGICGHHMKLKLVENYKDFNNKD-----RFVELKLV 321 (322)
Q Consensus 282 ---------~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~-----R~~~~~~~ 321 (322)
...+.+.+++++.| |..++++. ..+.. .++.+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~ll~~aG----f~~~~~~~-~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 308 MLTFMGGRVRTRDEVVDLAGSAG----LALASERT-SGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp HHHHHSCCCCCHHHHHHHHHTTT----EEEEEEEE-ECCSSCSSCEEEEEEEEC
T ss_pred HHHhCCCcCCCHHHHHHHHHHCC----CceEEEEE-CCCCcccCCcEEEEEEEC
Confidence 14556777888775 78777664 34444 77777663
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-13 Score=124.76 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=97.7
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcC----------CCCcEEEE
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHN----------VANQLQVF 195 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~----------l~~~i~~~ 195 (322)
..++..+... ++.+|||+|||+|.++..+++.. |..+|+++|+++.+++.|++|+...+ ...+++++
T Consensus 95 ~~~l~~l~~~--~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 3344444333 33799999999999999999984 56899999999999999999998642 23569999
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
++|+ .+... .+..++||+|++|+|-.. .+++.+.++|+|||.+
T Consensus 173 ~~d~-----~~~~~-~~~~~~fD~V~~~~~~~~-------------------------------~~l~~~~~~LkpgG~l 215 (336)
T 2b25_A 173 HKDI-----SGATE-DIKSLTFDAVALDMLNPH-------------------------------VTLPVFYPHLKHGGVC 215 (336)
T ss_dssp ESCT-----TCCC--------EEEEEECSSSTT-------------------------------TTHHHHGGGEEEEEEE
T ss_pred ECCh-----HHccc-ccCCCCeeEEEECCCCHH-------------------------------HHHHHHHHhcCCCcEE
Confidence 9998 33221 123467999999876211 2567889999999999
Q ss_pred EEEEcC-CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeE
Q psy7093 276 FLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRF 315 (322)
Q Consensus 276 ~~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~ 315 (322)
++..+. .+.....+.+.+.+. +|....+.....+....
T Consensus 216 v~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~w~~ 254 (336)
T 2b25_A 216 AVYVVNITQVIELLDGIRTCEL--ALSCEKISEVIVRDWLV 254 (336)
T ss_dssp EEEESSHHHHHHHHHHHHHHTC--CEEEEEEECCCCCCEEE
T ss_pred EEEeCCHHHHHHHHHHHHhcCC--CcccceEEEecccceEE
Confidence 976653 222333344444332 35555555544444333
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.5e-14 Score=119.17 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=92.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC---CCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL---EQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~---~~~ 216 (322)
+.+|||+|||+|.++..+++. ..+|+|+|+++.. .. .+++++++|+++......+...+. .++
T Consensus 26 g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 91 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEGIEK 91 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred CCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence 479999999999999999988 7899999999741 12 359999999832111000000011 148
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCH-HHHHHHHHHcC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHL-DKIKEWLGICG 295 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~-~~~~~~l~~~~ 295 (322)
||+|+||+|....... ..++ ...+...+.++..+.++|||||.+++.+-.... ..+...++..
T Consensus 92 ~D~Vlsd~~~~~~g~~------~~d~---------~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~- 155 (191)
T 3dou_A 92 VDDVVSDAMAKVSGIP------SRDH---------AVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN- 155 (191)
T ss_dssp EEEEEECCCCCCCSCH------HHHH---------HHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-
T ss_pred ceEEecCCCcCCCCCc------ccCH---------HHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-
Confidence 9999999864332210 0000 012345678899999999999999998865554 4566666553
Q ss_pred CCCceeeEEEecCCCCCC
Q psy7093 296 HHMKLKLVENYKDFNNKD 313 (322)
Q Consensus 296 ~~~~~~~v~~~~D~~g~~ 313 (322)
|..|++.++.+.+.
T Consensus 156 ----F~~v~~~kP~asR~ 169 (191)
T 3dou_A 156 ----FSSYKISKPPASRG 169 (191)
T ss_dssp ----EEEEEEECC-----
T ss_pred ----cCEEEEECCCCccC
Confidence 89999999987753
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-14 Score=139.09 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=107.6
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC------------------CCEEEEEeCCHHHH
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP------------------KLKAIAIDQSKHAC 176 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~------------------~~~v~~vDis~~al 176 (322)
.|+|++..+.++ +.+... ++.+|+|+|||||.+++.+++.+. ..+++|+|+++.++
T Consensus 151 fyTP~~iv~~mv----~~l~p~--~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~ 224 (541)
T 2ar0_A 151 YFTPRPLIKTII----HLLKPQ--PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 224 (541)
T ss_dssp CCCCHHHHHHHH----HHHCCC--TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred eeCCHHHHHHHH----HHhccC--CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence 556766555444 444433 236899999999999999887532 24799999999999
Q ss_pred HHHHHHHHHcCCCC----cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC
Q psy7093 177 DLTEQNAVMHNVAN----QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252 (322)
Q Consensus 177 ~~A~~n~~~~~l~~----~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~ 252 (322)
+.|+.|+..+++.+ ++.+.++|. +.... ...++||+|++||||........ ...|.. -.+
T Consensus 225 ~lA~~nl~l~gi~~~~~~~~~I~~gDt-----L~~~~--~~~~~fD~Vv~NPPf~~~~~~~~----~~~~~~----~~~- 288 (541)
T 2ar0_A 225 RLALMNCLLHDIEGNLDHGGAIRLGNT-----LGSDG--ENLPKAHIVATNPPFGSAAGTNI----TRTFVH----PTS- 288 (541)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCT-----TSHHH--HTSCCEEEEEECCCCTTCSSCCC----CSCCSS----CCS-
T ss_pred HHHHHHHHHhCCCccccccCCeEeCCC-----ccccc--ccccCCeEEEECCCcccccchhh----HhhcCC----CCC-
Confidence 99999999888764 277899998 43311 12468999999999987654320 011211 011
Q ss_pred ChhHHHHHHHHHHhccCccCcEEEEEEcCC------CHHHHHHHHHHcC
Q psy7093 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHD------HLDKIKEWLGICG 295 (322)
Q Consensus 253 ~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~------~~~~~~~~l~~~~ 295 (322)
.....++..+.++|+|||.+++.++.. ....+++.+.+.+
T Consensus 289 ---~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~ 334 (541)
T 2ar0_A 289 ---NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 334 (541)
T ss_dssp ---CHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred ---chHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC
Confidence 113378889999999999998877532 2466777776654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-13 Score=112.28 Aligned_cols=126 Identities=19% Similarity=0.221 Sum_probs=98.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+++++|+|+.+++.|+++.. +++++++|+ .+ ++ ++.++||+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~-----~~-~~--~~~~~~D~ 110 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFP------EARWVVGDL-----SV-DQ--ISETDFDL 110 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCT------TSEEEECCT-----TT-SC--CCCCCEEE
T ss_pred CCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCC------CCcEEEccc-----cc-CC--CCCCceeE
Confidence 379999999999999999988 6799999999999999998752 388999998 33 21 24578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC---CHHHHHHHHHHcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD---HLDKIKEWLGICGH 296 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~---~~~~~~~~l~~~~~ 296 (322)
|+++|+..... .. +....+++.+.++|+|||.+++.++.. ....+.+++++.|
T Consensus 111 i~~~~~~~~~~-----~~------------------~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~G- 166 (195)
T 3cgg_A 111 IVSAGNVMGFL-----AE------------------DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVG- 166 (195)
T ss_dssp EEECCCCGGGS-----CH------------------HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHT-
T ss_pred EEECCcHHhhc-----Ch------------------HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcC-
Confidence 99996643211 11 113588999999999999999988654 4778888888886
Q ss_pred CCceeeEEEecC
Q psy7093 297 HMKLKLVENYKD 308 (322)
Q Consensus 297 ~~~~~~v~~~~D 308 (322)
|..+++..+
T Consensus 167 ---f~~~~~~~~ 175 (195)
T 3cgg_A 167 ---LELENAFES 175 (195)
T ss_dssp ---EEEEEEESS
T ss_pred ---CEEeeeecc
Confidence 777777655
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-13 Score=114.79 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=79.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++.. +.+++|+|+|+.+++.|++++. .+++++++|+ .+ ++ .. ++||+|
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~-----~~-~~--~~-~~fD~v 110 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDF-----LS-FE--VP-TSIDTI 110 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCS-----SS-CC--CC-SCCSEE
T ss_pred CeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCCh-----hh-cC--CC-CCeEEE
Confidence 79999999999999999988 6799999999999999998764 4588999998 33 22 23 789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+++..+....+ .. ...+++.+.++|+|||.+++..
T Consensus 111 ~~~~~l~~~~~------~~------------------~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 111 VSTYAFHHLTD------DE------------------KNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp EEESCGGGSCH------HH------------------HHHHHHHHHHHSCTTCEEEEEE
T ss_pred EECcchhcCCh------HH------------------HHHHHHHHHHhcCCCCEEEEEe
Confidence 99865443221 10 1348999999999999999874
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=122.64 Aligned_cols=103 Identities=14% Similarity=0.242 Sum_probs=85.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++ +++++++|+ .+. + ..++||+
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~-----~~~-~---~~~~fD~ 187 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDI-----NAA-N---IQENYDF 187 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCG-----GGC-C---CCSCEEE
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecc-----ccc-c---ccCCccE
Confidence 379999999999999999998 67999999999999999999998886 599999998 332 2 2578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++.++..... . ....+++.+.++|+|||.+++..
T Consensus 188 i~~~~~~~~~~~------~------------------~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 188 IVSTVVFMFLNR------E------------------RVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp EEECSSGGGSCG------G------------------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEccchhhCCH------H------------------HHHHHHHHHHHhcCCCcEEEEEE
Confidence 999987653221 1 14579999999999999987755
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=127.77 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=85.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+ .+ ++ ++.++||+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~-----~~-~~--~~~~~fD~ 136 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKV-----EE-VE--LPVEKVDI 136 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCT-----TT-CC--CSSSCEEE
T ss_pred CCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcH-----HH-cc--CCCCceEE
Confidence 379999999999999999998 66799999999 59999999999999988899999998 32 22 34578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+++++...... ++ ....++..+.++|||||+++++
T Consensus 137 Iis~~~~~~l~~-----------~~------------~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 137 IISEWMGYCLFY-----------ES------------MLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp EEECCCBBTBTB-----------TC------------CHHHHHHHHHHHEEEEEEEESC
T ss_pred EEEccccccccC-----------ch------------hHHHHHHHHHHhCCCCCEEccc
Confidence 999976332110 10 1457888899999999998754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=138.28 Aligned_cols=137 Identities=16% Similarity=0.137 Sum_probs=98.8
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC------------------------------------
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF------------------------------------ 161 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~------------------------------------ 161 (322)
+.|..|.+...++....... +..++|++||||.+++.+|...
T Consensus 171 ~apl~e~LAa~ll~~~~~~~--~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~ 248 (703)
T 3v97_A 171 IAPIKETLAAAIVMRSGWQP--GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRA 248 (703)
T ss_dssp CCSSCHHHHHHHHHHTTCCT--TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhCCCC--CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHh
Confidence 55778889988888776543 3689999999999999888641
Q ss_pred ------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCC
Q psy7093 162 ------PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKL 235 (322)
Q Consensus 162 ------~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l 235 (322)
+..+++|+|+++.+++.|+.|+...|+.+.+++.++|+ .+. ......++||+||+||||...-..
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~-----~~~-~~~~~~~~~d~Iv~NPPYG~Rlg~--- 319 (703)
T 3v97_A 249 RKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDV-----AQL-TNPLPKGPYGTVLSNPPYGERLDS--- 319 (703)
T ss_dssp HHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCG-----GGC-CCSCTTCCCCEEEECCCCCC---C---
T ss_pred hhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-----hhC-ccccccCCCCEEEeCCCccccccc---
Confidence 23589999999999999999999999988899999998 432 111123379999999999642110
Q ss_pred ChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 236 EPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 236 ~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
..++ .++|+.+ ....+.+.|||.+++-+++
T Consensus 320 ~~~l---------------~~ly~~l-~~~lk~~~~g~~~~ilt~~ 349 (703)
T 3v97_A 320 EPAL---------------IALHSLL-GRIMKNQFGGWNLSLFSAS 349 (703)
T ss_dssp CHHH---------------HHHHHHH-HHHHHHHCTTCEEEEEESC
T ss_pred hhHH---------------HHHHHHH-HHHHHhhCCCCeEEEEeCC
Confidence 0111 1334443 3344455689999987765
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=117.64 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=90.4
Q ss_pred CchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 119 RSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
+|....+...++..+... ..++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.+++|++.. .++++++
T Consensus 52 ~p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~ 128 (227)
T 1g8a_A 52 NPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPIL 128 (227)
T ss_dssp CTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEE
T ss_pred CCCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEE
Confidence 344455556664434321 1134799999999999999999885 4579999999999999999998755 4699999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+ .+........++||+|++|+|.. + ..+.++..+.++|+|||.++
T Consensus 129 ~d~-----~~~~~~~~~~~~~D~v~~~~~~~---~-------------------------~~~~~l~~~~~~LkpgG~l~ 175 (227)
T 1g8a_A 129 GDA-----TKPEEYRALVPKVDVIFEDVAQP---T-------------------------QAKILIDNAEVYLKRGGYGM 175 (227)
T ss_dssp CCT-----TCGGGGTTTCCCEEEEEECCCST---T-------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred ccC-----CCcchhhcccCCceEEEECCCCH---h-------------------------HHHHHHHHHHHhcCCCCEEE
Confidence 998 33110001235899999998710 0 02356889999999999998
Q ss_pred EEEc
Q psy7093 277 LETN 280 (322)
Q Consensus 277 ~e~~ 280 (322)
+.+.
T Consensus 176 ~~~~ 179 (227)
T 1g8a_A 176 IAVK 179 (227)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8653
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=126.93 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
...++..+++.+... ++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++|+...++.+ ++++++|+
T Consensus 60 ~~~~~~~l~~~l~~~--~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~- 135 (317)
T 1dl5_A 60 QPSLMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDG- 135 (317)
T ss_dssp CHHHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG-
T ss_pred CHHHHHHHHHhcCCC--CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECCh-
Confidence 345666777766544 337999999999999999999866 4789999999999999999999988876 99999998
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.+..+ ..++||+|+++++..... +.+.+.|||||.+++.++
T Consensus 136 ----~~~~~---~~~~fD~Iv~~~~~~~~~--------------------------------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 136 ----YYGVP---EFSPYDVIFVTVGVDEVP--------------------------------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp ----GGCCG---GGCCEEEEEECSBBSCCC--------------------------------HHHHHHEEEEEEEEEEBC
T ss_pred ----hhccc---cCCCeEEEEEcCCHHHHH--------------------------------HHHHHhcCCCcEEEEEEC
Confidence 43322 246899999998764211 245678999999999875
Q ss_pred CC
Q psy7093 281 HD 282 (322)
Q Consensus 281 ~~ 282 (322)
..
T Consensus 177 ~~ 178 (317)
T 1dl5_A 177 LK 178 (317)
T ss_dssp BG
T ss_pred CC
Confidence 43
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-13 Score=125.87 Aligned_cols=118 Identities=19% Similarity=0.342 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+.+.+.+.+... ++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++.++++++++|+
T Consensus 50 ~~~~~~i~~~~~~~--~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~--- 122 (340)
T 2fyt_A 50 ESYRDFIYQNPHIF--KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKI--- 122 (340)
T ss_dssp HHHHHHHHHCGGGT--TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---
T ss_pred HHHHHHHHhhhhhc--CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeH---
Confidence 33445555544433 2379999999999999999987 556999999996 9999999999999877899999998
Q ss_pred ccccccCcCcCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
.+ ++ ++.++||+|++|+ +|..... .....++..+.++|||||.++
T Consensus 123 --~~-~~--~~~~~~D~Ivs~~~~~~l~~~------------------------~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 123 --EE-VH--LPVEKVDVIISEWMGYFLLFE------------------------SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp --TT-SC--CSCSCEEEEEECCCBTTBTTT------------------------CHHHHHHHHHHHHEEEEEEEE
T ss_pred --HH-hc--CCCCcEEEEEEcCchhhccCH------------------------HHHHHHHHHHHhhcCCCcEEE
Confidence 32 22 2457899999997 5543211 114578888999999999987
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.5e-13 Score=119.84 Aligned_cols=139 Identities=18% Similarity=0.209 Sum_probs=101.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc-C-CCCcEEEEEccCCC
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMH-N-VANQLQVFHAEIDS 201 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~-~-l~~~i~~~~~D~~~ 201 (322)
.+..++..+... ++.+|||+|||+|.++..++... |..+|+++|+++.+++.|++|+... + +..+++++++|+
T Consensus 87 ~~~~i~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~-- 162 (280)
T 1i9g_A 87 DAAQIVHEGDIF--PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL-- 162 (280)
T ss_dssp HHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG--
T ss_pred HHHHHHHHcCCC--CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch--
Confidence 344555555443 33799999999999999999864 5789999999999999999999887 4 445699999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+. + +..++||+|++|+|-. ..+++.+.++|+|||.+++.+..
T Consensus 163 ---~~~-~--~~~~~~D~v~~~~~~~-------------------------------~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 163 ---ADS-E--LPDGSVDRAVLDMLAP-------------------------------WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp ---GGC-C--CCTTCEEEEEEESSCG-------------------------------GGGHHHHHHHEEEEEEEEEEESS
T ss_pred ---Hhc-C--CCCCceeEEEECCcCH-------------------------------HHHHHHHHHhCCCCCEEEEEeCC
Confidence 332 1 2356899999987621 14678889999999999987754
Q ss_pred -CCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 282 -DHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 282 -~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
.+...+.+.+.++. +|..++++.
T Consensus 206 ~~~~~~~~~~l~~~~---~f~~~~~~~ 229 (280)
T 1i9g_A 206 VTQLSRIVEALRAKQ---CWTEPRAWE 229 (280)
T ss_dssp HHHHHHHHHHHHHHS---SBCCCEEEC
T ss_pred HHHHHHHHHHHHhcC---CcCCcEEEE
Confidence 34445555566522 255554443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=122.25 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=103.0
Q ss_pred CCcccC-chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy7093 114 PVFIPR-SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKH----FPKLKAIAIDQSKHACDLTEQNAVMHNV 188 (322)
Q Consensus 114 ~~~ipr-p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~----~~~~~v~~vDis~~al~~A~~n~~~~~l 188 (322)
+..+++ |++..++..++...+ +.+|||+|||+|+++..+++. .|+.+|+|+|+|+.+++.|+ ++
T Consensus 60 ~~~~~~~p~~~~~l~~~l~~~~-----~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~ 128 (236)
T 2bm8_A 60 GLRMLKDPDTQAVYHDMLWELR-----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD 128 (236)
T ss_dssp TEECCSCHHHHHHHHHHHHHHC-----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG
T ss_pred cccccCCHHHHHHHHHHHHhcC-----CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc
Confidence 455667 888887777766542 269999999999999999987 57899999999999998887 12
Q ss_pred CCcEEEEEccCCCcccccc--cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh
Q psy7093 189 ANQLQVFHAEIDSKGQVKN--LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS 266 (322)
Q Consensus 189 ~~~i~~~~~D~~~~~~~~~--l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~ 266 (322)
.++++++++|+ .+. ++. ....+||+|+++... .+ +..++.++.
T Consensus 129 ~~~v~~~~gD~-----~~~~~l~~-~~~~~fD~I~~d~~~---~~--------------------------~~~~l~~~~ 173 (236)
T 2bm8_A 129 MENITLHQGDC-----SDLTTFEH-LREMAHPLIFIDNAH---AN--------------------------TFNIMKWAV 173 (236)
T ss_dssp CTTEEEEECCS-----SCSGGGGG-GSSSCSSEEEEESSC---SS--------------------------HHHHHHHHH
T ss_pred CCceEEEECcc-----hhHHHHHh-hccCCCCEEEECCch---Hh--------------------------HHHHHHHHH
Confidence 35699999998 332 211 123479999986531 00 457888888
Q ss_pred c-cCccCcEEEEEEc-----CCCHHHHHHHHHHcCCCCceeeEE
Q psy7093 267 N-YLKPNGSIFLETN-----HDHLDKIKEWLGICGHHMKLKLVE 304 (322)
Q Consensus 267 ~-~Lk~gG~l~~e~~-----~~~~~~~~~~l~~~~~~~~~~~v~ 304 (322)
+ +|+|||+++++.. ....+.+.++++..+. +|..+.
T Consensus 174 r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~--~f~~~~ 215 (236)
T 2bm8_A 174 DHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRD--VLSMDM 215 (236)
T ss_dssp HHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTT--TEEEET
T ss_pred HhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcc--cEEEcc
Confidence 6 9999999998531 1233478888887752 365543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=116.26 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=90.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++ ++.+..+|+ ..++ ..++||+
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~------~~~~---~~~~fD~ 105 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-------GRPVRTMLF------HQLD---AIDAYDA 105 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-------TSCCEECCG------GGCC---CCSCEEE
T ss_pred CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-------CCceEEeee------ccCC---CCCcEEE
Confidence 379999999999999999988 679999999999999999887 266778887 2232 4678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC---------------CCH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH---------------DHL 284 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~---------------~~~ 284 (322)
|+++..+.... . +-...+++.+.++|+|||.+++.+.. ...
T Consensus 106 v~~~~~l~~~~------~------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 161 (211)
T 3e23_A 106 VWAHACLLHVP------R------------------DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSE 161 (211)
T ss_dssp EEECSCGGGSC------H------------------HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCH
T ss_pred EEecCchhhcC------H------------------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCH
Confidence 99986543321 1 11458999999999999999997643 257
Q ss_pred HHHHHHHHHcC
Q psy7093 285 DKIKEWLGICG 295 (322)
Q Consensus 285 ~~~~~~l~~~~ 295 (322)
+.+.+++++.|
T Consensus 162 ~~~~~~l~~aG 172 (211)
T 3e23_A 162 EWLRARYAEAG 172 (211)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88999999986
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=119.84 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=88.4
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
...+++.+... ++.+|||+|||+|.++..++..+|+.+|+|+|+|+.+++.|+++ ..+++++++|+ .
T Consensus 22 ~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~-----~ 88 (259)
T 2p35_A 22 ARDLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADL-----A 88 (259)
T ss_dssp HHHHHTTCCCS--CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCT-----T
T ss_pred HHHHHHhcCCC--CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECCh-----h
Confidence 34455555433 34799999999999999999998889999999999999999987 13589999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+ ++ ..++||+|+++..+....+ ...+++++.++|+|||.+++.+.
T Consensus 89 ~-~~---~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 89 T-WK---PAQKADLLYANAVFQWVPD--------------------------HLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp T-CC---CSSCEEEEEEESCGGGSTT--------------------------HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred h-cC---ccCCcCEEEEeCchhhCCC--------------------------HHHHHHHHHHhcCCCeEEEEEeC
Confidence 2 22 3568999999876554322 35789999999999999999764
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=116.95 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=98.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+.+.+.+.+. ++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|+++... ..+++++++|+
T Consensus 31 ~~~~~l~~~~~----~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~---- 98 (215)
T 2pxx_A 31 SFRALLEPELR----PEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDV---- 98 (215)
T ss_dssp HHHHHHGGGCC----TTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCT----
T ss_pred HHHHHHHHhcC----CCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcch----
Confidence 34444444442 237899999999999999998843 3899999999999999998763 23699999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
.+ ++ +..++||+|++++++......... | ........+....+++.+.++|+|||.+++.. +..
T Consensus 99 -~~-~~--~~~~~fD~v~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~-~~~ 162 (215)
T 2pxx_A 99 -RK-LD--FPSASFDVVLEKGTLDALLAGERD--------P---WTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT-SAA 162 (215)
T ss_dssp -TS-CC--SCSSCEEEEEEESHHHHHTTTCSC--------T---TSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE-SCC
T ss_pred -hc-CC--CCCCcccEEEECcchhhhcccccc--------c---cccccchhHHHHHHHHHHHHhCcCCCEEEEEe-CCC
Confidence 33 22 345789999999886321100000 0 00001122345789999999999999998844 555
Q ss_pred HHHHHHHHHHcC
Q psy7093 284 LDKIKEWLGICG 295 (322)
Q Consensus 284 ~~~~~~~l~~~~ 295 (322)
......++...+
T Consensus 163 ~~~~~~~~~~~~ 174 (215)
T 2pxx_A 163 PHFRTRHYAQAY 174 (215)
T ss_dssp HHHHHHHHCCGG
T ss_pred cHHHHHHHhccc
Confidence 666666775554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-13 Score=120.67 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=83.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||+|.++..++.+.++++|+|+|+|+.+++.|+++++..++ ++++++++|+ .+ + +.++||
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa-----~~-l----~d~~FD 190 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDE-----TV-I----DGLEFD 190 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCG-----GG-G----GGCCCS
T ss_pred CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECch-----hh-C----CCCCcC
Confidence 34899999999997765554555789999999999999999999999998 7899999998 33 2 357899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+|+++-- ..+ ..++++++.+.|||||.+++....
T Consensus 191 vV~~~a~---~~d--------------------------~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 191 VLMVAAL---AEP--------------------------KRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp EEEECTT---CSC--------------------------HHHHHHHHHHHCCTTCEEEEEECC
T ss_pred EEEECCC---ccC--------------------------HHHHHHHHHHHcCCCcEEEEEcCc
Confidence 9998421 000 458999999999999999986643
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=119.31 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..++..+++.+... ++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++|+...++.+ +++..+|+
T Consensus 77 ~~~~~~~~~~l~~~--~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~--- 149 (235)
T 1jg1_A 77 PHMVAIMLEIANLK--PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDG--- 149 (235)
T ss_dssp HHHHHHHHHHHTCC--TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG---
T ss_pred HHHHHHHHHhcCCC--CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCc---
Confidence 34555666666443 237999999999999999999876 899999999999999999999888765 99999997
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
...++ ...+||+|+++.+.... ...+.+.|+|||.+++.++..
T Consensus 150 --~~~~~---~~~~fD~Ii~~~~~~~~--------------------------------~~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 150 --SKGFP---PKAPYDVIIVTAGAPKI--------------------------------PEPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp --GGCCG---GGCCEEEEEECSBBSSC--------------------------------CHHHHHTEEEEEEEEEEECSS
T ss_pred --ccCCC---CCCCccEEEECCcHHHH--------------------------------HHHHHHhcCCCcEEEEEEecC
Confidence 33332 23469999998654321 124678999999999999865
Q ss_pred C
Q psy7093 283 H 283 (322)
Q Consensus 283 ~ 283 (322)
.
T Consensus 193 ~ 193 (235)
T 1jg1_A 193 H 193 (235)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=128.66 Aligned_cols=123 Identities=15% Similarity=0.322 Sum_probs=94.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
+..++.+.+.+.+..... ++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|
T Consensus 45 ~~r~~~~~~~i~~~~~~~--~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d 120 (376)
T 3r0q_C 45 RVRMDAYFNAVFQNKHHF--EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGS 120 (376)
T ss_dssp HHHHHHHHHHHHTTTTTT--TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESC
T ss_pred hHHHHHHHHHHHhccccC--CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECc
Confidence 334555666665554333 3479999999999999999987 44599999999 9999999999999998899999999
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+ .+ +. ++ ++||+|++|+ +|....+ . ....++..+.++|+|||++++
T Consensus 121 ~-----~~-~~--~~-~~~D~Iv~~~~~~~l~~e------------~------------~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 121 V-----ED-IS--LP-EKVDVIISEWMGYFLLRE------------S------------MFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp G-----GG-CC--CS-SCEEEEEECCCBTTBTTT------------C------------THHHHHHHHHHHEEEEEEEES
T ss_pred h-----hh-cC--cC-CcceEEEEcChhhcccch------------H------------HHHHHHHHHHhhCCCCeEEEE
Confidence 8 33 22 12 7899999987 3433211 0 145788889999999999876
Q ss_pred E
Q psy7093 278 E 278 (322)
Q Consensus 278 e 278 (322)
.
T Consensus 168 ~ 168 (376)
T 3r0q_C 168 S 168 (376)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-13 Score=117.27 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=88.2
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEccCC
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNV----ANQLQVFHAEID 200 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l----~~~i~~~~~D~~ 200 (322)
...+++.+.....++.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|+...+. .++++++++|+
T Consensus 64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~- 142 (226)
T 1i1n_A 64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG- 142 (226)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG-
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc-
Confidence 334455543211234799999999999999999875 447999999999999999999988664 34699999998
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.... ...++||+|+++.|+.. +++.+.++|+|||.+++.++
T Consensus 143 ----~~~~---~~~~~fD~i~~~~~~~~--------------------------------~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 143 ----RMGY---AEEAPYDAIHVGAAAPV--------------------------------VPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp ----GGCC---GGGCCEEEEEECSBBSS--------------------------------CCHHHHHTEEEEEEEEEEES
T ss_pred ----ccCc---ccCCCcCEEEECCchHH--------------------------------HHHHHHHhcCCCcEEEEEEe
Confidence 3222 13468999999877621 23457789999999999887
Q ss_pred CC
Q psy7093 281 HD 282 (322)
Q Consensus 281 ~~ 282 (322)
..
T Consensus 184 ~~ 185 (226)
T 1i1n_A 184 PA 185 (226)
T ss_dssp CT
T ss_pred cC
Confidence 64
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=119.23 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=102.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
...+++.+... ++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++... .+++++++|+ .
T Consensus 82 ~~~~l~~l~~~--~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~-----~ 150 (254)
T 1xtp_A 82 SRNFIASLPGH--GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASM-----E 150 (254)
T ss_dssp HHHHHHTSTTC--CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCG-----G
T ss_pred HHHHHHhhccc--CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccH-----H
Confidence 34445544332 34799999999999999998874 568999999999999999887544 4699999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH---- 281 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~---- 281 (322)
. ++ +..++||+|+++..+... +. +-...+++.+.++|+|||.+++....
T Consensus 151 ~-~~--~~~~~fD~v~~~~~l~~~------~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 203 (254)
T 1xtp_A 151 T-AT--LPPNTYDLIVIQWTAIYL------TD------------------ADFVKFFKHCQQALTPNGYIFFKENCSTGD 203 (254)
T ss_dssp G-CC--CCSSCEEEEEEESCGGGS------CH------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC--C
T ss_pred H-CC--CCCCCeEEEEEcchhhhC------CH------------------HHHHHHHHHHHHhcCCCeEEEEEecCCCcc
Confidence 2 22 245789999997543321 11 11458999999999999999986631
Q ss_pred ------------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 282 ------------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 282 ------------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
...+.+.+++++.| |..+++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~ 236 (254)
T 1xtp_A 204 RFLVDKEDSSLTRSDIHYKRLFNESG----VRVVKEA 236 (254)
T ss_dssp CEEEETTTTEEEBCHHHHHHHHHHHT----CCEEEEE
T ss_pred cceecccCCcccCCHHHHHHHHHHCC----CEEEEee
Confidence 23578999999987 5655543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=121.23 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=94.1
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|.+..++..++.... +.+|||+|||+|..+..+++.+| +.+|+++|+++.+++.|++|+...++.++++++++
T Consensus 45 ~~~~~~~l~~l~~~~~-----~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~ 119 (239)
T 2hnk_A 45 SPEEGQFLNILTKISG-----AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG 119 (239)
T ss_dssp CHHHHHHHHHHHHHHT-----CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred CHHHHHHHHHHHHhhC-----cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC
Confidence 4555555555544322 27999999999999999999987 68999999999999999999999888778999999
Q ss_pred cCCCcccccccCc------------CcCC--CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 198 EIDSKGQVKNLQP------------DLLE--QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 198 D~~~~~~~~~l~~------------~~~~--~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
|+ .+.++. .++. ++||+|+++... ..+..+++
T Consensus 120 d~-----~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~-----------------------------~~~~~~l~ 165 (239)
T 2hnk_A 120 SA-----LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK-----------------------------ENYPNYYP 165 (239)
T ss_dssp CH-----HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG-----------------------------GGHHHHHH
T ss_pred CH-----HHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH-----------------------------HHHHHHHH
Confidence 97 332211 1122 689999997421 11457889
Q ss_pred HHhccCccCcEEEEEE
Q psy7093 264 FGSNYLKPNGSIFLET 279 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~ 279 (322)
.+.++|+|||++++..
T Consensus 166 ~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 166 LILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHcCCCeEEEEEc
Confidence 9999999999999864
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=117.61 Aligned_cols=120 Identities=9% Similarity=0.037 Sum_probs=85.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEEEEEccCCCccccccc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN-----------VANQLQVFHAEIDSKGQVKNL 208 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~-----------l~~~i~~~~~D~~~~~~~~~l 208 (322)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... ...+++++++|+ .+ +
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~-----~~-l 94 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-----FA-L 94 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-----SS-S
T ss_pred CCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc-----cc-C
Confidence 379999999999999999998 6799999999999999998764310 024699999998 32 2
Q ss_pred CcCcCC-CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-EcCC----
Q psy7093 209 QPDLLE-QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-TNHD---- 282 (322)
Q Consensus 209 ~~~~~~-~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~~~~---- 282 (322)
+ ... ++||+|+++-.++. ++.+. ...+++++.++|||||.+++. +...
T Consensus 95 ~--~~~~~~fD~v~~~~~l~~------l~~~~------------------~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~ 148 (203)
T 1pjz_A 95 T--ARDIGHCAAFYDRAAMIA------LPADM------------------RERYVQHLEALMPQACSGLLITLEYDQALL 148 (203)
T ss_dssp T--HHHHHSEEEEEEESCGGG------SCHHH------------------HHHHHHHHHHHSCSEEEEEEEEESSCSSSS
T ss_pred C--cccCCCEEEEEECcchhh------CCHHH------------------HHHHHHHHHHHcCCCcEEEEEEEecCcccc
Confidence 2 122 68999999755432 12111 347899999999999984443 3321
Q ss_pred -------CHHHHHHHHHH
Q psy7093 283 -------HLDKIKEWLGI 293 (322)
Q Consensus 283 -------~~~~~~~~l~~ 293 (322)
..+++.+++..
T Consensus 149 ~~~~~~~~~~el~~~~~~ 166 (203)
T 1pjz_A 149 EGPPFSVPQTWLHRVMSG 166 (203)
T ss_dssp SSCCCCCCHHHHHHTSCS
T ss_pred CCCCCCCCHHHHHHHhcC
Confidence 24666666654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=115.34 Aligned_cols=111 Identities=16% Similarity=0.192 Sum_probs=82.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|+. +++++++|+ .+ + + ++||+
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~-----~~-~----~-~~~D~ 113 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG------GVNFMVADV-----SE-I----S-GKYDT 113 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCG-----GG-C----C-CCEEE
T ss_pred CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcH-----HH-C----C-CCeeE
Confidence 379999999999999999987 55689999999999999999875 489999998 33 2 2 58999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
|++||||.....- ....+++.+.+.+ |.+++.+.......+.+.+...|
T Consensus 114 v~~~~p~~~~~~~------------------------~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 114 WIMNPPFGSVVKH------------------------SDRAFIDKAFETS---MWIYSIGNAKARDFLRREFSARG 162 (200)
T ss_dssp EEECCCC-------------------------------CHHHHHHHHHHE---EEEEEEEEGGGHHHHHHHHHHHE
T ss_pred EEECCCchhccCc------------------------hhHHHHHHHHHhc---CcEEEEEcCchHHHHHHHHHHCC
Confidence 9999999764320 0135667777776 44555566666777778777764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-13 Score=112.47 Aligned_cols=104 Identities=16% Similarity=0.277 Sum_probs=84.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+++|+|+|+.+++.|++++...++. +++++++|+ .+ ++ + .++||+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~-----~~-~~--~-~~~~D~ 100 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDL-----NN-LT--F-DRQYDF 100 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCG-----GG-CC--C-CCCEEE
T ss_pred CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcch-----hh-CC--C-CCCceE
Confidence 379999999999999999988 679999999999999999999888774 499999998 33 22 2 568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++.++.... ++ ....+++.+.++|+|||.+++..
T Consensus 101 v~~~~~l~~~~------~~------------------~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 101 ILSTVVLMFLE------AK------------------TIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEESCGGGSC------GG------------------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcchhhhCC------HH------------------HHHHHHHHHHHhcCCCeEEEEEE
Confidence 99987654321 11 14578999999999999977643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=123.55 Aligned_cols=109 Identities=11% Similarity=0.107 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+++.+.+..... .+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++ ..+++++++|+
T Consensus 27 ~~l~~~l~~~~~~~----~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~--- 90 (257)
T 4hg2_A 27 RALFRWLGEVAPAR----GDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALR-------HPRVTYAVAPA--- 90 (257)
T ss_dssp HHHHHHHHHHSSCS----SEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCC-------CTTEEEEECCT---
T ss_pred HHHHHHHHHhcCCC----CCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhh-------cCCceeehhhh---
Confidence 56677776665432 68999999999999999987 5789999999999987753 23599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+.++ ++.++||+|+++-.++... ..+++.++.++|||||.+++..
T Consensus 91 ---e~~~--~~~~sfD~v~~~~~~h~~~---------------------------~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 91 ---EDTG--LPPASVDVAIAAQAMHWFD---------------------------LDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp ---TCCC--CCSSCEEEEEECSCCTTCC---------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hhhc--ccCCcccEEEEeeehhHhh---------------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence 3333 4678999999965443221 2368889999999999987743
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=116.05 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=95.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+...+...+... ++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+ +++++++|+
T Consensus 39 ~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~----- 106 (216)
T 3ofk_A 39 HTQLLRLSLSSG--AVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDI----- 106 (216)
T ss_dssp HHHHHHHHTTTS--SEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCT-----
T ss_pred HHHHHHHHcccC--CCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcch-----
Confidence 333443344433 2378999999999999999988 4799999999999999999876543 699999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc----
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN---- 280 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~---- 280 (322)
.+. + ..++||+|+++..+....+ .+....+++.+.++|+|||.+++.+.
T Consensus 107 ~~~-~---~~~~fD~v~~~~~l~~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 159 (216)
T 3ofk_A 107 LQF-S---TAELFDLIVVAEVLYYLED-----------------------MTQMRTAIDNMVKMLAPGGHLVFGSARDAT 159 (216)
T ss_dssp TTC-C---CSCCEEEEEEESCGGGSSS-----------------------HHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred hhC-C---CCCCccEEEEccHHHhCCC-----------------------HHHHHHHHHHHHHHcCCCCEEEEEecCCCc
Confidence 332 2 3578999999865543221 11245789999999999999998652
Q ss_pred ------CCCHHHHHHHHHHc
Q psy7093 281 ------HDHLDKIKEWLGIC 294 (322)
Q Consensus 281 ------~~~~~~~~~~l~~~ 294 (322)
....+.+..++...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (216)
T 3ofk_A 160 CRRWGHVAGAETVITILTEA 179 (216)
T ss_dssp HHHTTCSCCHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHhh
Confidence 22345566666543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=119.75 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=109.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.+++++..+|+ ++.+ +. .||+
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~----p~-~~D~ 238 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSF-----FDPL----PA-GAGG 238 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT-----TSCC----CC-SCSE
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCC-----CCCC----CC-CCcE
Confidence 37999999999999999999999999999999 999999999999988888899999999 5433 23 7999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-------------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN------------------- 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~------------------- 280 (322)
|+++-..+. ++.+ -..++++++.+.|+|||++++.-.
T Consensus 239 v~~~~vlh~------~~~~------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~ 294 (332)
T 3i53_A 239 YVLSAVLHD------WDDL------------------SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYF 294 (332)
T ss_dssp EEEESCGGG------SCHH------------------HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHH
T ss_pred EEEehhhcc------CCHH------------------HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhC
Confidence 999644332 1111 135899999999999999877321
Q ss_pred ---CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 281 ---HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 281 ---~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
....++..+++++.| |..++++.- .+ .-++.+++
T Consensus 295 ~~~~~t~~e~~~ll~~aG----f~~~~~~~~-~~-~~vie~r~ 331 (332)
T 3i53_A 295 GGKERSLAELGELAAQAG----LAVRAAHPI-SY-VSIVEMTA 331 (332)
T ss_dssp SCCCCCHHHHHHHHHHTT----EEEEEEEEC-SS-SEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHCC----CEEEEEEEC-CC-cEEEEEee
Confidence 123567888888886 888888754 34 55665554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-13 Score=124.36 Aligned_cols=121 Identities=18% Similarity=0.321 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+..+.+.+++.+.... +.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++.++++++++|+
T Consensus 35 ~~~y~~~i~~~l~~~~--~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~-- 108 (348)
T 2y1w_A 35 TGTYQRAILQNHTDFK--DKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV-- 108 (348)
T ss_dssp HHHHHHHHHHTGGGTT--TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT--
T ss_pred HHHHHHHHHhccccCC--cCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcch--
Confidence 4445566666665442 379999999999999999886 567999999996 8899999999999877899999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ..++||+|++++++..... + -+...+..+.++|+|||.+++.+
T Consensus 109 ---~~-~~---~~~~~D~Ivs~~~~~~~~~-----------~-------------~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 109 ---EE-VS---LPEQVDIIISEPMGYMLFN-----------E-------------RMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp ---TT-CC---CSSCEEEEEECCCBTTBTT-----------T-------------SHHHHHHHGGGGEEEEEEEESCE
T ss_pred ---hh-CC---CCCceeEEEEeCchhcCCh-----------H-------------HHHHHHHHHHhhcCCCeEEEEec
Confidence 32 22 1357999999987432110 0 02356667889999999998764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=123.56 Aligned_cols=120 Identities=18% Similarity=0.290 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+.+.+.+..... ++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+
T Consensus 24 ~~y~~ai~~~~~~~--~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~--- 96 (328)
T 1g6q_1 24 LSYRNAIIQNKDLF--KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKL--- 96 (328)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCT---
T ss_pred HHHHHHHHhhHhhc--CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECch---
Confidence 33444554443333 2379999999999999999987 55699999999 59999999999999988899999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.+ ++ ++.++||+|+++++...... +. ....++..+.++|+|||.++.
T Consensus 97 --~~-~~--~~~~~~D~Ivs~~~~~~l~~-----------~~------------~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 97 --ED-VH--LPFPKVDIIISEWMGYFLLY-----------ES------------MMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp --TT-SC--CSSSCEEEEEECCCBTTBST-----------TC------------CHHHHHHHHHHHEEEEEEEES
T ss_pred --hh-cc--CCCCcccEEEEeCchhhccc-----------HH------------HHHHHHHHHHhhcCCCeEEEE
Confidence 32 22 24468999999987432111 10 134788888999999999874
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=120.99 Aligned_cols=151 Identities=21% Similarity=0.342 Sum_probs=112.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+++.+... ++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.++++++.+|+ ++
T Consensus 180 ~~l~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~ 251 (359)
T 1x19_A 180 QLLLEEAKLD--GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI-----YK 251 (359)
T ss_dssp HHHHHHCCCT--TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCT-----TT
T ss_pred HHHHHhcCCC--CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcc-----cc
Confidence 3444444432 337999999999999999999999999999999 999999999999988888899999999 43
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EE------
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ET------ 279 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~------ 279 (322)
. + ...+|+|+++-.++... . +....+++++.+.|+|||.+++ +.
T Consensus 252 ~-~----~~~~D~v~~~~vlh~~~------d------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~ 302 (359)
T 1x19_A 252 E-S----YPEADAVLFCRILYSAN------E------------------QLSTIMCKKAFDAMRSGGRLLILDMVIDDPE 302 (359)
T ss_dssp S-C----CCCCSEEEEESCGGGSC------H------------------HHHHHHHHHHHTTCCTTCEEEEEEECCCCTT
T ss_pred C-C----CCCCCEEEEechhccCC------H------------------HHHHHHHHHHHHhcCCCCEEEEEecccCCCC
Confidence 2 1 12349999965543211 1 1246899999999999999855 42
Q ss_pred --------------c-C------CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 280 --------------N-H------DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 280 --------------~-~------~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+ . ...+.+.+++++.| |..++++. .. ..+++.++|
T Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aG----f~~v~~~~-~~-~~~vi~a~k 358 (359)
T 1x19_A 303 NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLG----YKDVTMVR-KY-DHLLVQAVK 358 (359)
T ss_dssp SCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHT----CEEEEEEE-ET-TEEEEEEEC
T ss_pred CchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCC----CceEEEEe-cC-CceEEEEeC
Confidence 1 1 34566788888876 67777665 22 567777765
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=121.89 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=109.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccccc-CcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL-QPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l-~~~~~~~~fDl 219 (322)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.++++++.+|+ ++.. + ++ +.||+
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~~~--~p-~~~D~ 251 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANL-----LDRDVP--FP-TGFDA 251 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCC-----CSSSCC--CC-CCCSE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccc-----cccCCC--CC-CCcCE
Confidence 7999999999999999999999999999999 999999999998888877899999999 4431 1 12 67999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEc------------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETN------------------ 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~------------------ 280 (322)
|+++--.+ .++.+ -...+++++.+.|+|||.+++ |.-
T Consensus 252 v~~~~vlh------~~~~~------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~ 307 (363)
T 3dp7_A 252 VWMSQFLD------CFSEE------------------EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISL 307 (363)
T ss_dssp EEEESCST------TSCHH------------------HHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHH
T ss_pred EEEechhh------hCCHH------------------HHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhh
Confidence 99864332 12221 135789999999999999866 321
Q ss_pred -----------CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 281 -----------HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 281 -----------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
....++..+++++.| |..++++........++..++
T Consensus 308 ~~~~~~~~~~~~~t~~e~~~ll~~AG----f~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 308 YFTAMANGNSKMFHSDDLIRCIENAG----LEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHSSCSSCCSCCHHHHHHHHHTTT----EEESCCCCCBTTTBEEEEEEE
T ss_pred hHHhhhCCCCcccCHHHHHHHHHHcC----CeEEEEEeCCCCCceEEEEee
Confidence 113566777888775 888888776655566666655
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=119.36 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=101.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
++..+.+.+.+...+.... ++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++ ++++.+|
T Consensus 22 ~~~~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---------~~~~~~d 89 (240)
T 3dli_A 22 RGSRELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK---------FNVVKSD 89 (240)
T ss_dssp TCCHHHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT---------SEEECSC
T ss_pred CCCHHHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---------cceeecc
Confidence 3445556666655554322 3478999999999999999988 67899999999999998865 6778888
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+ .+.+. .+..++||+|+++-.+.... .. .+..+++++.++|||||.+++.
T Consensus 90 ~-----~~~~~-~~~~~~fD~i~~~~~l~~~~------~~------------------~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 90 A-----IEYLK-SLPDKYLDGVMISHFVEHLD------PE------------------RLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp H-----HHHHH-TSCTTCBSEEEEESCGGGSC------GG------------------GHHHHHHHHHHHBCTTCCEEEE
T ss_pred H-----HHHhh-hcCCCCeeEEEECCchhhCC------cH------------------HHHHHHHHHHHHcCCCcEEEEE
Confidence 7 33211 13467899999964332211 10 1458999999999999999997
Q ss_pred EcCC-------------------CHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 279 TNHD-------------------HLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 279 ~~~~-------------------~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+... ....+.+++++.| |..+++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG----f~~~~~~ 182 (240)
T 3dli_A 140 SPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLG----FRDVKIE 182 (240)
T ss_dssp EECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHT----CEEEEEE
T ss_pred eCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCC----CeEEEEE
Confidence 6432 2467888888886 5655443
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-13 Score=113.12 Aligned_cols=142 Identities=19% Similarity=0.287 Sum_probs=90.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc--ccc---cC----
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP--KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ--VKN---LQ---- 209 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~--~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~--~~~---l~---- 209 (322)
.+|||+|||+|.++..+++.++ ..+|+|+|+|+.+ .. .+++++++|+.+... ... ++
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC-----------
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccccc
Confidence 6899999999999999999987 6899999999831 12 358999999832110 000 00
Q ss_pred --------cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 210 --------PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 210 --------~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
..+..++||+|++|++...... ....+. ...+....+++.+.++|+|||.+++.+..
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~------~~~d~~---------~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAVPCIGN------KIDDHL---------NSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCCCCSC------HHHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCcCCCCC------cccCHH---------HHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 0023468999999876443211 000000 00112346889999999999999997654
Q ss_pred -CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCe
Q psy7093 282 -DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314 (322)
Q Consensus 282 -~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R 314 (322)
.+...+...+... |..+.+.++..++.|
T Consensus 157 ~~~~~~l~~~l~~~-----f~~v~~~~~~~~r~~ 185 (201)
T 2plw_A 157 GSQTNNLKTYLKGM-----FQLVHTTKPKASRNE 185 (201)
T ss_dssp STTHHHHHHHHHTT-----EEEEEECCCC-----
T ss_pred CCCHHHHHHHHHHH-----HheEEEECCcccCCc
Confidence 4455666666542 788899998876543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-13 Score=118.29 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=79.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++. ++.+|+|+|+|+.+++.|+++. .++.+..+|+ . .++ ..++||+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~-----~-~~~---~~~~fD~ 120 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY------PHLHFDVADA-----R-NFR---VDKPLDA 120 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCT-----T-TCC---CSSCEEE
T ss_pred CCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC------CCCEEEECCh-----h-hCC---cCCCcCE
Confidence 37999999999999999998 5789999999999999998764 3488999998 3 233 2468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+++..+....+ ...+++++.++|+|||++++.+.
T Consensus 121 v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 121 VFSNAMLHWVKE--------------------------PEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp EEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcchhhhCcC--------------------------HHHHHHHHHHhcCCCcEEEEEec
Confidence 999876544322 34788999999999999998764
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=120.00 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=98.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.+|... +..+|+++|+++.+++.+++|++++++. +++++++|+ .+.........+||
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~-----~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDF-----LAVSPSDPRYHEVH 176 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCG-----GGSCTTCGGGTTEE
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCh-----HhcCccccccCCCC
Confidence 3799999999999999999875 4579999999999999999999999986 499999998 33211100115799
Q ss_pred EEEEcCCCCCCCCCCCCChhhh---cccccccccCCCCh-hHHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIA---LYEDIKALDGGHDG-LNIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~---~~ep~~al~~g~~g-l~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~ 290 (322)
.|++|||+.....+...+ +.. .+.+. .-.+ ....+.++..+.++|+ ||.+++.++. ...+.+..+
T Consensus 177 ~Vl~D~PcSg~G~~~r~p-d~~~~~~~~~~-----~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~ 249 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQL-EEPGAGTPSPV-----RLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDA 249 (309)
T ss_dssp EEEECCCCCC-------------------C-----CHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHH
T ss_pred EEEEcCCcCCCCCCccCC-ChhhhccCCHH-----HHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHH
Confidence 999999997665433211 110 00000 0011 1345788999999987 9999987764 335667777
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
++++.
T Consensus 250 l~~~~ 254 (309)
T 2b9e_A 250 LQQNP 254 (309)
T ss_dssp HTTST
T ss_pred HHhCC
Confidence 77664
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-13 Score=120.36 Aligned_cols=110 Identities=11% Similarity=0.131 Sum_probs=86.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~fD 218 (322)
+.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...++..+++++++|+ .+. + + ..++||
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~-~--~~~~~~fD 135 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-----YGR-H--MDLGKEFD 135 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-----TTS-C--CCCSSCEE
T ss_pred CCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc-----ccc-c--cCCCCCcC
Confidence 379999999999999998887 55699999999999999999998887767799999998 322 1 2 356899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+|+++...+... + .......+++.+.++|+|||.+++.+.
T Consensus 136 ~v~~~~~l~~~~------------~----------~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 136 VISSQFSFHYAF------------S----------TSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp EEEEESCGGGGG------------S----------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEECchhhhhc------------C----------CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999975432100 0 012256899999999999999998764
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=115.75 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=81.7
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ++.+.++|+ .+ ++ ++.++||+|+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~-----~~-~~--~~~~~fD~v~ 99 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNL-----AD-FD--IVADAWEGIV 99 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBT-----TT-BS--CCTTTCSEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcCh-----hh-cC--CCcCCccEEE
Confidence 9999999999999999987 67999999999999999999988775 599999998 32 22 2457899999
Q ss_pred EcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 222 SNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 222 ~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
++..+. .. +....+++.+.++|+|||.+++..
T Consensus 100 ~~~~~~--------~~------------------~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 100 SIFCHL--------PS------------------SLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp EECCCC--------CH------------------HHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred EEhhcC--------CH------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 964322 11 114589999999999999999975
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-14 Score=122.29 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=83.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..+..+++..| .+++++|+|+.+++.|++++...+. ++.++.+|+ .... ..++.++||.
T Consensus 61 G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a-----~~~~-~~~~~~~FD~ 131 (236)
T 3orh_A 61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLW-----EDVA-PTLPDGHFDG 131 (236)
T ss_dssp CEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCH-----HHHG-GGSCTTCEEE
T ss_pred CCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehH-----Hhhc-ccccccCCce
Confidence 37999999999999999988754 5899999999999999999887663 488899987 2222 2245678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+.++........ . +.....+++++.++|||||++++.
T Consensus 132 i~~D~~~~~~~~~-~--------------------~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 132 ILYDTYPLSEETW-H--------------------THQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEECCCCCBGGGT-T--------------------THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred EEEeeeecccchh-h--------------------hcchhhhhhhhhheeCCCCEEEEE
Confidence 9998653321110 0 112458899999999999999873
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-13 Score=115.39 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=91.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.++..+++.+... ++.+|||+|||+|.++..+++.. |..+|+++|+|+.+++.|++++...++.+ +++.++|+
T Consensus 64 ~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~--- 137 (215)
T 2yxe_A 64 HMVGMMCELLDLK--PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDG--- 137 (215)
T ss_dssp HHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCG---
T ss_pred HHHHHHHHhhCCC--CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCc---
Confidence 3455566665443 33799999999999999999986 44899999999999999999998888764 99999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
...++ ..++||+|+++.++.... ..+.++|+|||.+++.++..
T Consensus 138 --~~~~~---~~~~fD~v~~~~~~~~~~--------------------------------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 138 --TLGYE---PLAPYDRIYTTAAGPKIP--------------------------------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp --GGCCG---GGCCEEEEEESSBBSSCC--------------------------------HHHHHTEEEEEEEEEEESSS
T ss_pred --ccCCC---CCCCeeEEEECCchHHHH--------------------------------HHHHHHcCCCcEEEEEECCC
Confidence 43332 246899999987654211 25678999999999988765
Q ss_pred C
Q psy7093 283 H 283 (322)
Q Consensus 283 ~ 283 (322)
.
T Consensus 181 ~ 181 (215)
T 2yxe_A 181 L 181 (215)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=119.09 Aligned_cols=106 Identities=15% Similarity=0.327 Sum_probs=82.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. +++++++|+ .+ ++ ..++||+
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~-----~~-~~---~~~~fD~ 108 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDV-----LE-IA---FKNEFDA 108 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCG-----GG-CC---CCSCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECCh-----hh-cc---cCCCccE
Confidence 379999999999999999987 67999999999999999999988765 489999998 33 22 2368999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|+++...... ... +....+++.+.++|+|||.+++++..
T Consensus 109 v~~~~~~~~~-----~~~------------------~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 109 VTMFFSTIMY-----FDE------------------EDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEECSSGGGG-----SCH------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEcCCchhc-----CCH------------------HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 9984221100 000 12468899999999999999998754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=126.89 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=85.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccCCCcccccccC-cCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQ-LQVFHAEIDSKGQVKNLQ-PDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~-i~~~~~D~~~~~~~~~l~-~~~~~~~f 217 (322)
.+|||+|||+|.+++.+|++.++ .+|+++|+++.+++.+++|++.+++.++ ++++++|+ .+.+. . ..++|
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da-----~~~l~~~--~~~~f 126 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEA-----NFFLRKE--WGFGF 126 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH-----HHHHHSC--CSSCE
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCH-----HHHHHHh--hCCCC
Confidence 78999999999999999997655 6899999999999999999999999887 99999998 54432 2 13579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+|+.|| |.. ...++..+.+.|++||++++++
T Consensus 127 D~V~lDP-~g~-----------------------------~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 127 DYVDLDP-FGT-----------------------------PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEEECC-SSC-----------------------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEECC-CcC-----------------------------HHHHHHHHHHHhCCCCEEEEEe
Confidence 9999998 321 1257888889999999998876
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-13 Score=121.71 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
..++.+++.+... ++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 77 ~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---- 149 (318)
T 2fk8_A 77 AKVDLNLDKLDLK--PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---- 149 (318)
T ss_dssp HHHHHHHTTSCCC--TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG----
T ss_pred HHHHHHHHhcCCC--CcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh----
Confidence 3445555555433 34799999999999999999886 5699999999999999999999888877899999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
. .+ + ++||+|+++..+.... . +....+++.+.++|+|||.+++..
T Consensus 150 -~-~~----~-~~fD~v~~~~~l~~~~------~------------------~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 150 -E-DF----A-EPVDRIVSIEAFEHFG------H------------------ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp -G-GC----C-CCCSEEEEESCGGGTC------G------------------GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -H-HC----C-CCcCEEEEeChHHhcC------H------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 22 2 6899999975543221 0 114589999999999999998854
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=108.57 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=93.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..+++.+ ++.+++++|+++ +++. .++++.++|+.+....+.++..+..++||
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 3799999999999999999985 568999999998 6432 35899999982210000010002456899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGHH 297 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~~ 297 (322)
+|++|+|+...... .. ... ........+++.+.++|+|||.+++.+. ..+...+.+.+...
T Consensus 91 ~i~~~~~~~~~~~~-----~~-~~~---------~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~--- 152 (180)
T 1ej0_A 91 VVMSDMAPNMSGTP-----AV-DIP---------RAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL--- 152 (180)
T ss_dssp EEEECCCCCCCSCH-----HH-HHH---------HHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH---
T ss_pred EEEECCCccccCCC-----cc-chH---------HHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh---
Confidence 99999998654321 00 000 0012236899999999999999988554 45566677777664
Q ss_pred CceeeEEEecCCC
Q psy7093 298 MKLKLVENYKDFN 310 (322)
Q Consensus 298 ~~~~~v~~~~D~~ 310 (322)
|..+.+.+...
T Consensus 153 --~~~~~~~~~~~ 163 (180)
T 1ej0_A 153 --FTKVKVRKPDS 163 (180)
T ss_dssp --EEEEEEECCTT
T ss_pred --hhhEEeecCCc
Confidence 67777765544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=121.69 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=87.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH----------c------CCCCcEEEEEccCCCcc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM----------H------NVANQLQVFHAEIDSKG 203 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~----------~------~l~~~i~~~~~D~~~~~ 203 (322)
+.+|||+|||+|..+..+|+. +.+|+|+|+|+.+++.|+++... . ....+++++++|+
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~---- 142 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI---- 142 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT----
T ss_pred CCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc----
Confidence 379999999999999999987 77999999999999999865431 0 0124699999999
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cC-
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NH- 281 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~- 281 (322)
.+ ++. ...++||+|+++-.+.. ++++. ...+++.+.++|||||.+++.+ .+
T Consensus 143 -~~-l~~-~~~~~FD~V~~~~~l~~------l~~~~------------------~~~~l~~~~~~LkpGG~l~l~~~~~~ 195 (252)
T 2gb4_A 143 -FD-LPR-ANIGKFDRIWDRGALVA------INPGD------------------HDRYADIILSLLRKEFQYLVAVLSYD 195 (252)
T ss_dssp -TT-GGG-GCCCCEEEEEESSSTTT------SCGGG------------------HHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred -cc-CCc-ccCCCEEEEEEhhhhhh------CCHHH------------------HHHHHHHHHHHcCCCeEEEEEEEecC
Confidence 33 221 01268999999755432 22211 2478999999999999986532 21
Q ss_pred ----------CCHHHHHHHHHH
Q psy7093 282 ----------DHLDKIKEWLGI 293 (322)
Q Consensus 282 ----------~~~~~~~~~l~~ 293 (322)
-..+++.+++..
T Consensus 196 ~~~~~g~~~~~~~~el~~~l~~ 217 (252)
T 2gb4_A 196 PTKHAGPPFYVPSAELKRLFGT 217 (252)
T ss_dssp TTSCCCSSCCCCHHHHHHHHTT
T ss_pred CccCCCCCCCCCHHHHHHHhhC
Confidence 246778888865
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=118.84 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=94.3
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC------CEEEEEeCCHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK------LKAIAIDQSKHACDL 178 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~------~~v~~vDis~~al~~ 178 (322)
.+..+.+..+..+..|. ++..+++.+.....++.+|||+|||+|.++..+++..+. .+|+++|+++.+++.
T Consensus 53 ~d~~~~~~~~~~~~~p~---~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~ 129 (227)
T 1r18_A 53 MDAPQPIGGGVTISAPH---MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRR 129 (227)
T ss_dssp BSSCEEEETTEEECCHH---HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHH
T ss_pred cCCCcccCCCCccCChH---HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHH
Confidence 34444444444443443 344555555321123479999999999999999986542 599999999999999
Q ss_pred HHHHHHHcCC----CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCCh
Q psy7093 179 TEQNAVMHNV----ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG 254 (322)
Q Consensus 179 A~~n~~~~~l----~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~g 254 (322)
|++|+...+. ..+++++++|+ ...++ ..++||+|+++.+...
T Consensus 130 a~~~~~~~~~~~~~~~~v~~~~~d~-----~~~~~---~~~~fD~I~~~~~~~~-------------------------- 175 (227)
T 1r18_A 130 SKANLNTDDRSMLDSGQLLIVEGDG-----RKGYP---PNAPYNAIHVGAAAPD-------------------------- 175 (227)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEESCG-----GGCCG---GGCSEEEEEECSCBSS--------------------------
T ss_pred HHHHHHhcCccccCCCceEEEECCc-----ccCCC---cCCCccEEEECCchHH--------------------------
Confidence 9999887651 23599999998 44322 2368999999876532
Q ss_pred hHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 255 LNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 255 l~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+.+.+.+.|+|||.+++.++.
T Consensus 176 ------~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 176 ------TPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp ------CCHHHHHTEEEEEEEEEEESC
T ss_pred ------HHHHHHHHhcCCCEEEEEEec
Confidence 124567899999999998875
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-13 Score=117.97 Aligned_cols=108 Identities=16% Similarity=0.141 Sum_probs=81.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCC-HHHHHHH---HHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQS-KHACDLT---EQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis-~~al~~A---~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
.+|||+|||+|.++..+++..++.+|+|+|+| +.+++.| ++++...++. ++.++++|+ ..++..+ .+.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~------~~l~~~~-~d~ 97 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAA------ESLPFEL-KNI 97 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBT------TBCCGGG-TTC
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCH------HHhhhhc-cCe
Confidence 68999999999999999988889999999999 6666665 8887777775 499999998 3333222 267
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+|.|.+|+||.... ..+. . .+..+++++.++|||||.+++
T Consensus 98 v~~i~~~~~~~~~~------~~~~--~-------------~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 98 ADSISILFPWGTLL------EYVI--K-------------PNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEEEESCCHHHH------HHHH--T-------------TCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEEeCCCcHHh------hhhh--c-------------chHHHHHHHHHhcCCCcEEEE
Confidence 89999999865310 0000 0 023688899999999999988
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-13 Score=115.14 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=77.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.++++.. +++.++.+|+ ..........++||+
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~-----~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDA-----SKPWKYSGIVEKVDL 129 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCT-----TCGGGTTTTCCCEEE
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCC-----CCchhhcccccceeE
Confidence 47999999999999999999877679999999999988777766543 2488888998 221000011368999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|++|.+.. . ..+.+++++.++|||||.+++.+
T Consensus 130 V~~~~~~~----------~------------------~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 130 IYQDIAQK----------N------------------QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp EEECCCST----------T------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccCh----------h------------------HHHHHHHHHHHHhCCCCEEEEEE
Confidence 99983210 0 02356889999999999999875
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=116.37 Aligned_cols=147 Identities=9% Similarity=0.073 Sum_probs=103.1
Q ss_pred CchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 119 RSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.|-...+...++.-+..-. .++.+|||+|||+|.++..+|+.. |..+|+|+|+++.+++.+++++...+ ++..+.
T Consensus 56 ~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~ 132 (233)
T 4df3_A 56 NAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPIL 132 (233)
T ss_dssp CTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEE
T ss_pred CCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEE
Confidence 4444556666665544321 245899999999999999999975 67899999999999999998876542 488899
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|..++.. .....+.+|+|+++.++... .+.++.++.+.|||||.++
T Consensus 133 ~d~~~p~~-----~~~~~~~vDvVf~d~~~~~~----------------------------~~~~l~~~~r~LKpGG~lv 179 (233)
T 4df3_A 133 GDARFPEK-----YRHLVEGVDGLYADVAQPEQ----------------------------AAIVVRNARFFLRDGGYML 179 (233)
T ss_dssp SCTTCGGG-----GTTTCCCEEEEEECCCCTTH----------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred EeccCccc-----cccccceEEEEEEeccCChh----------------------------HHHHHHHHHHhccCCCEEE
Confidence 98833211 11245689999998765421 3478899999999999998
Q ss_pred EEEcCCC----------HHHHHHHHHHcCCCCceeeEEE
Q psy7093 277 LETNHDH----------LDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 277 ~e~~~~~----------~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
+.+.... .+...+.+++.| |..++.
T Consensus 180 I~ik~r~~d~~~p~~~~~~~ev~~L~~~G----F~l~e~ 214 (233)
T 4df3_A 180 MAIKARSIDVTTEPSEVYKREIKTLMDGG----LEIKDV 214 (233)
T ss_dssp EEEECCHHHHHTCCCHHHHHHHHHHHHTT----CCEEEE
T ss_pred EEEecccCCCCCChHHHHHHHHHHHHHCC----CEEEEE
Confidence 8653322 223345566665 555553
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.6e-13 Score=109.87 Aligned_cols=128 Identities=13% Similarity=0.161 Sum_probs=95.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|+++ ..++++.++|. + +..++||+|
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d~---------~--~~~~~~D~v 79 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK------FDSVITLSDPK---------E--IPDNSVDFI 79 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH------CTTSEEESSGG---------G--SCTTCEEEE
T ss_pred CeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh------CCCcEEEeCCC---------C--CCCCceEEE
Confidence 699999999999999999985 4999999999999999988 23588888873 1 245789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-------------CCHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-------------DHLDKI 287 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-------------~~~~~~ 287 (322)
+++..+....+ ...+++++.+.|+|||.+++.... ...+.+
T Consensus 80 ~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (170)
T 3i9f_A 80 LFANSFHDMDD--------------------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDY 133 (170)
T ss_dssp EEESCSTTCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHH
T ss_pred EEccchhcccC--------------------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHH
Confidence 99876554322 347899999999999999886421 135677
Q ss_pred HHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 288 KEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 288 ~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.++++ | |..+++.. .....-.+++.+
T Consensus 134 ~~~l~--G----f~~~~~~~-~~~~~~~l~~~~ 159 (170)
T 3i9f_A 134 MGWFS--N----FVVEKRFN-PTPYHFGLVLKR 159 (170)
T ss_dssp HHHTT--T----EEEEEEEC-SSTTEEEEEEEE
T ss_pred HHHHh--C----cEEEEccC-CCCceEEEEEec
Confidence 77777 5 77776654 433444444443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=116.99 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=88.4
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHH------HHHHHHHHHHHcCCCCcEEEEEcc-
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKH------ACDLTEQNAVMHNVANQLQVFHAE- 198 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~------al~~A~~n~~~~~l~~~i~~~~~D- 198 (322)
..+++.+... ++.+|||+|||+|.++..++... |..+|+|+|+|+. +++.|++++...++.++++++++|
T Consensus 33 ~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQVK--PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHTCC--TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 4445554433 33799999999999999999985 5689999999997 999999999888876789999998
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
. ... ...+..++||+|+++.++....+ ...+++....+++|||.+++.
T Consensus 111 ~-----~~~-~~~~~~~~fD~v~~~~~l~~~~~--------------------------~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 111 L-----SDD-LGPIADQHFDRVVLAHSLWYFAS--------------------------ANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp T-----TTC-CGGGTTCCCSEEEEESCGGGSSC--------------------------HHHHHHHHHHHTTTCSEEEEE
T ss_pred h-----hhc-cCCCCCCCEEEEEEccchhhCCC--------------------------HHHHHHHHHHHhCCCCEEEEE
Confidence 4 111 11134578999999887654332 124666677777889998884
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=113.46 Aligned_cols=110 Identities=19% Similarity=0.224 Sum_probs=83.8
Q ss_pred HHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccccc
Q psy7093 129 ITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL 208 (322)
Q Consensus 129 i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l 208 (322)
+.+.+... ++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++... .+++++++|+ .+ +
T Consensus 35 l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~-----~~-~ 101 (243)
T 3bkw_A 35 LRAMLPEV--GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADL-----DK-L 101 (243)
T ss_dssp HHHHSCCC--TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCG-----GG-C
T ss_pred HHHhcccc--CCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcCh-----hh-c
Confidence 44444433 2379999999999999999987 333999999999999999877543 3599999998 33 2
Q ss_pred CcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 209 QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 209 ~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+ +..++||+|+++..+....+ ...+++.+.++|+|||.+++.+
T Consensus 102 ~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 102 H--LPQDSFDLAYSSLALHYVED--------------------------VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp C--CCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--CCCCCceEEEEeccccccch--------------------------HHHHHHHHHHhcCcCcEEEEEe
Confidence 2 24678999999766543221 3478999999999999999865
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=120.46 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+...... ++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...+ .+++++++|+
T Consensus 49 ~~~~l~~~~~~---~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~----- 117 (236)
T 1zx0_A 49 YMHALAAAASS---KGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLW----- 117 (236)
T ss_dssp HHHHHHHHHTT---TCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCH-----
T ss_pred HHHHHHhhcCC---CCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCH-----
Confidence 44444444322 2379999999999999999775 34589999999999999999987766 4699999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.+.+ ..+..++||+|++| .|.. ...... ......+++++.++|||||++++.
T Consensus 118 ~~~~-~~~~~~~fD~V~~d-~~~~--~~~~~~------------------~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 118 EDVA-PTLPDGHFDGILYD-TYPL--SEETWH------------------THQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp HHHG-GGSCTTCEEEEEEC-CCCC--BGGGTT------------------THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred HHhh-cccCCCceEEEEEC-Cccc--chhhhh------------------hhhHHHHHHHHHHhcCCCeEEEEE
Confidence 3321 11346789999994 1111 000000 112457899999999999999863
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.1e-14 Score=117.41 Aligned_cols=117 Identities=7% Similarity=0.066 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
|.-+.+...+...+.. +.+|||+|||+|.+++.++...|.++|+|+|+|+.+++.|++|+...|+.+++.+ .|.
T Consensus 34 p~ld~fY~~~~~~l~~----~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~ 107 (200)
T 3fzg_A 34 ATLNDFYTYVFGNIKH----VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNK 107 (200)
T ss_dssp GGHHHHHHHHHHHSCC----CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECC
T ss_pred HhHHHHHHHHHhhcCC----CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecc
Confidence 4556666777776643 3799999999999999999999999999999999999999999999998766766 665
Q ss_pred CCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.... +.++||+|+++--++. + ++. +..+..+.+.|+|||+++-
T Consensus 108 -----~~~~----~~~~~DvVLa~k~LHl------L-~~~-------------------~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 108 -----ESDV----YKGTYDVVFLLKMLPV------L-KQQ-------------------DVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp -----HHHH----TTSEEEEEEEETCHHH------H-HHT-------------------TCCHHHHHHTCEEEEEEEE
T ss_pred -----cccC----CCCCcChhhHhhHHHh------h-hhh-------------------HHHHHHHHHHhCCCCEEEE
Confidence 3322 4678999999532221 1 110 1233367889999998753
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-13 Score=122.46 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=87.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--C-C-CCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--N-V-ANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~-l-~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++... + + ..+++++.+|+ .+.++. ..+
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~-----~~~l~~--~~~ 150 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA-----RAYLER--TEE 150 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH-----HHHHHH--CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchH-----HHHHHh--cCC
Confidence 37999999999999999999877889999999999999999997642 2 2 35799999998 443321 356
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+||+|++|++...... .|...| +...+++.+.++|+|||++++..+.
T Consensus 151 ~fD~Ii~d~~~~~~~~-----------~~~~~l--------~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 151 RYDVVIIDLTDPVGED-----------NPARLL--------YTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp CEEEEEEECCCCBSTT-----------CGGGGG--------SSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CccEEEECCCCccccc-----------Ccchhc--------cHHHHHHHHHHhcCCCcEEEEEccC
Confidence 8999999987532000 000011 1357899999999999999997653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-12 Score=119.11 Aligned_cols=190 Identities=14% Similarity=0.214 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHcCCCc-eeEecceeecCeEEEeCCCCcccCchhHHHHHHH------------HHHhccCCCCCCeEEEE
Q psy7093 80 THLNKLCECRLARMPV-QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDII------------TDKLESSNHTPTRMIEI 146 (322)
Q Consensus 80 ~~~~~~~~rr~~~~p~-~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i------------~~~~~~~~~~~~~iLDl 146 (322)
..+..+.+....|+|. ++..|. +||+. +.++|++....... ++.+... ++.+|||+
T Consensus 122 ~~~~~l~~~l~~g~~~~~~~~g~-~~~~~--------~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~~~--~~~~vLDv 190 (360)
T 1tw3_A 122 ISFTRLPDAIRTGRPTYESIYGK-PFYED--------LAGRPDLRASFDSLLACDQDVAFDAPAAAYDWT--NVRHVLDV 190 (360)
T ss_dssp GGGGGHHHHHHHCCCCHHHHHSS-CHHHH--------HHTCHHHHHHHHHHHTTTTTTTTHHHHHHSCCT--TCSEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHhcCC-CHHHH--------HHhChHHHHHHHHHHHHHHHHhHHHHHHhCCCc--cCcEEEEe
Confidence 3445566666667764 444442 34432 12456655554433 2333222 34799999
Q ss_pred cCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCC
Q psy7093 147 GSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226 (322)
Q Consensus 147 g~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy 226 (322)
|||+|.++..+++.+|+.+++++|+ +.+++.|++|+...++.++++++.+|+ ++.++ ..||+|+++..+
T Consensus 191 G~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~~-----~~~D~v~~~~vl 259 (360)
T 1tw3_A 191 GGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF-----FEPLP-----RKADAIILSFVL 259 (360)
T ss_dssp TCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT-----TSCCS-----SCEEEEEEESCG
T ss_pred CCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCC-----CCCCC-----CCccEEEEcccc
Confidence 9999999999999999999999999 999999999999988877899999999 54332 249999997654
Q ss_pred CCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-Ec---C---------------------
Q psy7093 227 VPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-TN---H--------------------- 281 (322)
Q Consensus 227 ~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~~---~--------------------- 281 (322)
+... .+ ....+++++.+.|+|||.+++. .. .
T Consensus 260 ~~~~------~~------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (360)
T 1tw3_A 260 LNWP------DH------------------DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGA 315 (360)
T ss_dssp GGSC------HH------------------HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCC
T ss_pred cCCC------HH------------------HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCc
Confidence 4221 11 1347899999999999988763 22 1
Q ss_pred -CCHHHHHHHHHHcCCCCceeeEEEecCCCCC-----CeEEEEEE
Q psy7093 282 -DHLDKIKEWLGICGHHMKLKLVENYKDFNNK-----DRFVELKL 320 (322)
Q Consensus 282 -~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~-----~R~~~~~~ 320 (322)
...+.+.+++++.| |..++++.- .+. ..++.++|
T Consensus 316 ~~t~~e~~~ll~~aG----f~~~~~~~~-~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 316 LRTREKWDGLAASAG----LVVEEVRQL-PSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCBHHHHHHHHHHTT----EEEEEEEEE-ECSSSSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHCC----CeEEEEEeC-CCCcccCccEEEEEEe
Confidence 12456677788875 777776643 232 45666665
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-12 Score=119.35 Aligned_cols=140 Identities=10% Similarity=0.193 Sum_probs=108.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.++++++.+|+ ++.+ + ++||+|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~----~-~~~D~v 237 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM-----LQEV----P-SNGDIY 237 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT-----TTCC----C-SSCSEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC-----CCCC----C-CCCCEE
Confidence 7999999999999999999999999999999 999999999988777777899999999 5432 2 579999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE---cC----------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET---NH---------------- 281 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~---~~---------------- 281 (322)
+++-..+... ++ ....+++++.+.|+|||.+++.- ..
T Consensus 238 ~~~~vl~~~~------~~------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~ 293 (334)
T 2ip2_A 238 LLSRIIGDLD------EA------------------ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFM 293 (334)
T ss_dssp EEESCGGGCC------HH------------------HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHH
T ss_pred EEchhccCCC------HH------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHh
Confidence 9965443211 11 13589999999999999987742 11
Q ss_pred ------CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 282 ------DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 282 ------~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
...+.+.+++++.| |..++++. ..+...++.++|
T Consensus 294 ~~~~~~~t~~e~~~ll~~aG----f~~~~~~~-~~~~~~~i~~~~ 333 (334)
T 2ip2_A 294 ACAGRHRTTEEVVDLLGRGG----FAVERIVD-LPMETRMIVAAR 333 (334)
T ss_dssp HHSCCCCBHHHHHHHHHHTT----EEEEEEEE-ETTTEEEEEEEE
T ss_pred hCCCcCCCHHHHHHHHHHCC----CceeEEEE-CCCCCEEEEEEe
Confidence 12556677888875 78888775 345567777765
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=122.48 Aligned_cols=134 Identities=9% Similarity=0.085 Sum_probs=97.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||||||+|.++..+++.+|+.+|++||+++.+++.|++++.... ..+++++.+|. .+.+.. ...++||+|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da-----~~~l~~-~~~~~fDvI 163 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDA-----RMVAES-FTPASRDVI 163 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCH-----HHHHHT-CCTTCEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcH-----HHHHhh-ccCCCCCEE
Confidence 49999999999999999998899999999999999999999875432 45799999998 444321 235689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCH----HHHHHHHHHcCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHL----DKIKEWLGICGH 296 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~----~~~~~~l~~~~~ 296 (322)
++|.+..... .. .|+ ...+++.+.++|+|||++++.++.... ..+.+.+++.
T Consensus 164 i~D~~~~~~~-----~~---------~L~--------t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~v-- 219 (317)
T 3gjy_A 164 IRDVFAGAIT-----PQ---------NFT--------TVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEV-- 219 (317)
T ss_dssp EECCSTTSCC-----CG---------GGS--------BHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHH--
T ss_pred EECCCCcccc-----ch---------hhh--------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHH--
Confidence 9986432110 00 010 247888999999999999998864331 2334444443
Q ss_pred CCceeeEEEecC
Q psy7093 297 HMKLKLVENYKD 308 (322)
Q Consensus 297 ~~~~~~v~~~~D 308 (322)
|..+.++.+
T Consensus 220 ---F~~v~~~~~ 228 (317)
T 3gjy_A 220 ---FEHVAVIAD 228 (317)
T ss_dssp ---CSEEEEEEC
T ss_pred ---CCceEEEEe
Confidence 566777754
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=119.52 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=109.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++.++++++.+|+ ++... ...+.||+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~~~~--~~~~~~D~ 251 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNL-----LDARN--FEGGAADV 251 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCT-----TCGGG--GTTCCEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCc-----ccCcc--cCCCCccE
Confidence 47999999999999999999999999999999 789999999999988888899999999 44320 12356999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-c------------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-N------------------ 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~------------------ 280 (322)
|+++-..+.. +++ -...+++++.+.|+|||.+++.- .
T Consensus 252 v~~~~vlh~~------~~~------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~ 307 (352)
T 3mcz_A 252 VMLNDCLHYF------DAR------------------EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHM 307 (352)
T ss_dssp EEEESCGGGS------CHH------------------HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHH
T ss_pred EEEecccccC------CHH------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHH
Confidence 9996543321 111 14589999999999999987632 0
Q ss_pred --------CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 281 --------HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 281 --------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
....+.+.+++++.| |..++. ..|...+++++|.
T Consensus 308 ~~~~~~~~~~t~~e~~~ll~~aG----f~~~~~---~~g~~~l~~a~kp 349 (352)
T 3mcz_A 308 MVNTNHGELHPTPWIAGVVRDAG----LAVGER---SIGRYTLLIGQRS 349 (352)
T ss_dssp HHHSTTCCCCCHHHHHHHHHHTT----CEEEEE---EETTEEEEEEECC
T ss_pred HhhCCCCCcCCHHHHHHHHHHCC----Cceeee---ccCceEEEEEecC
Confidence 122566778888886 676663 3577888888773
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=116.21 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=82.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++ . +...+++++++|+ . .++ +..++||+
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~-----~-~~~--~~~~~fD~ 107 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADA-----R-AIP--LPDESVHG 107 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCT-----T-SCC--SCTTCEEE
T ss_pred CCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEccc-----c-cCC--CCCCCeeE
Confidence 479999999999999999987 679999999999999999987 2 2234699999998 2 222 34678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+++..+....+ ...+++++.++|+|||.+++..+
T Consensus 108 v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~~~~~ 142 (263)
T 2yqz_A 108 VIVVHLWHLVPD--------------------------WPKVLAEAIRVLKPGGALLEGWD 142 (263)
T ss_dssp EEEESCGGGCTT--------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCchhhcCC--------------------------HHHHHHHHHHHCCCCcEEEEEec
Confidence 999866544322 34789999999999999988644
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.2e-12 Score=109.27 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=79.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++ .+. .+++++++|+ .+. ...++||+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~-----~~~----~~~~~~D~ 110 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDL-----FDW----TPDRQWDA 110 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCT-----TSC----CCSSCEEE
T ss_pred CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEeccc-----ccC----CCCCceeE
Confidence 369999999999999999998 6799999999999999987 343 3599999998 332 24678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++-.+.. ++.. ....+++.+.++|+|||.+++..
T Consensus 111 v~~~~~l~~------~~~~------------------~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 111 VFFAHWLAH------VPDD------------------RFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp EEEESCGGG------SCHH------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEechhhc------CCHH------------------HHHHHHHHHHHHcCCCeEEEEEe
Confidence 999753322 1111 13589999999999999998863
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=118.22 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=91.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V-ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++...+ + ..+++++.+|+ .+.+.. ..++
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~-----~~~l~~--~~~~ 151 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA-----SKFLEN--VTNT 151 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH-----HHHHHH--CCSC
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh-----HHHHHh--CCCC
Confidence 479999999999999999988777899999999999999999876432 2 35799999998 443321 2568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLG 292 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~ 292 (322)
||+|++|++..... . ..+ +...+++.+.++|+|||++++..+. .+.+.+..+.+
T Consensus 152 fD~Ii~d~~~~~~~-------~-------~~l--------~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~ 207 (283)
T 2i7c_A 152 YDVIIVDSSDPIGP-------A-------ETL--------FNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIG 207 (283)
T ss_dssp EEEEEEECCCTTTG-------G-------GGG--------SSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHH
T ss_pred ceEEEEcCCCCCCc-------c-------hhh--------hHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHH
Confidence 99999987532110 0 000 0157889999999999999998653 34444444443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-12 Score=111.40 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 122 TEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 122 te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
...+...+++.+... -.++.+|||+|||+|..+..+|... +..+|+|+|+|+.+++...+.++.. .++.++++|+
T Consensus 58 ~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da 134 (232)
T 3id6_C 58 RSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADA 134 (232)
T ss_dssp TCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCT
T ss_pred HHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEccc
Confidence 344556666655421 1234799999999999999999874 4679999999999876555444432 3599999998
Q ss_pred CCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.. ........++||+|++|.|.. + ..+.+...+.++|||||.+++.+
T Consensus 135 ~~-----~~~~~~~~~~~D~I~~d~a~~---~-------------------------~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 135 RF-----PQSYKSVVENVDVLYVDIAQP---D-------------------------QTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp TC-----GGGTTTTCCCEEEEEECCCCT---T-------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc-----chhhhccccceEEEEecCCCh---h-------------------------HHHHHHHHHHHhCCCCeEEEEEE
Confidence 32 111011245899999986531 0 01234556666999999999875
Q ss_pred cCCC----------HHHHHHHHHHcCCCCceeeEEEe
Q psy7093 280 NHDH----------LDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 280 ~~~~----------~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
.... .+.+.+.+++++ |+.++..
T Consensus 182 k~~~~d~t~~~~e~~~~~~~~L~~~g----f~~~~~~ 214 (232)
T 3id6_C 182 KARSIDVTKDPKEIYKTEVEKLENSN----FETIQII 214 (232)
T ss_dssp C-------CCSSSSTTHHHHHHHHTT----EEEEEEE
T ss_pred ccCCcccCCCHHHHHHHHHHHHHHCC----CEEEEEe
Confidence 3221 244556677765 6766644
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-13 Score=120.69 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=96.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------CC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV----------------------------AN 190 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l----------------------------~~ 190 (322)
++.+|||+|||+|.++..++...+ .+|+|+|+|+.+++.|++++...+. ..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 347899999999999999888733 5899999999999999988764321 01
Q ss_pred cE-EEEEccCCCcccccccC-cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhcc
Q psy7093 191 QL-QVFHAEIDSKGQVKNLQ-PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY 268 (322)
Q Consensus 191 ~i-~~~~~D~~~~~~~~~l~-~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~ 268 (322)
++ +++++|+ .+..+ .....++||+|+++-..... .+ ...-+..+++++.++
T Consensus 135 ~v~~~~~~d~-----~~~~~~~~~~~~~fD~v~~~~~l~~~------~~----------------~~~~~~~~l~~~~~~ 187 (265)
T 2i62_A 135 AIKQVLKCDV-----TQSQPLGGVSLPPADCLLSTLCLDAA------CP----------------DLPAYRTALRNLGSL 187 (265)
T ss_dssp HEEEEEECCT-----TSSSTTTTCCCCCEEEEEEESCHHHH------CS----------------SHHHHHHHHHHHHTT
T ss_pred hheeEEEeee-----ccCCCCCccccCCccEEEEhhhhhhh------cC----------------ChHHHHHHHHHHHhh
Confidence 27 8999998 33221 11122789999996432200 00 012256899999999
Q ss_pred CccCcEEEEEEc----------------CCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 269 LKPNGSIFLETN----------------HDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 269 Lk~gG~l~~e~~----------------~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
|+|||++++... .-..+.+.+++.+.| |..+++..
T Consensus 188 LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~~ 238 (265)
T 2i62_A 188 LKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAG----YTIEQFEV 238 (265)
T ss_dssp EEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTT----CEEEEEEE
T ss_pred CCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCC----CEEEEEEE
Confidence 999999988542 124668999999986 56665543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=114.48 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..++..+++.+... ++.+|||+|||+|.++..++... .+|+++|+|+.+++.|++++...+ +++++++|+
T Consensus 56 ~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~--- 125 (231)
T 1vbf_A 56 LNLGIFMLDELDLH--KGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDG--- 125 (231)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCG---
T ss_pred HHHHHHHHHhcCCC--CCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCc---
Confidence 34566666666543 33799999999999999999983 799999999999999999987665 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
.+.++ ..++||+|+++.++... ...+.++|+|||.+++.++..
T Consensus 126 --~~~~~---~~~~fD~v~~~~~~~~~--------------------------------~~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 126 --TLGYE---EEKPYDRVVVWATAPTL--------------------------------LCKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp --GGCCG---GGCCEEEEEESSBBSSC--------------------------------CHHHHHTEEEEEEEEEEECSS
T ss_pred --ccccc---cCCCccEEEECCcHHHH--------------------------------HHHHHHHcCCCcEEEEEEcCC
Confidence 44222 24689999998765321 124678999999999988754
Q ss_pred C
Q psy7093 283 H 283 (322)
Q Consensus 283 ~ 283 (322)
.
T Consensus 169 ~ 169 (231)
T 1vbf_A 169 R 169 (231)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=122.98 Aligned_cols=104 Identities=16% Similarity=0.308 Sum_probs=80.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++|||+|||||.+++.+|+. +..+|+|+|.|+ +++.|+++++.+++.++|+++++|+ +.+. ..++||+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~------~~~~---lpe~~Dv 152 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPV------ETVE---LPEQVDA 152 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCT------TTCC---CSSCEEE
T ss_pred CCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeee------eeec---CCccccE
Confidence 379999999999999988876 557899999996 7899999999999999999999998 2222 2368999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|||++--.. ..+|. .+..++....++|+|||.++.
T Consensus 153 ivsE~~~~~-----------l~~e~------------~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 153 IVSEWMGYG-----------LLHES------------MLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp EECCCCBTT-----------BTTTC------------SHHHHHHHHHHHEEEEEEEES
T ss_pred EEeeccccc-----------ccccc------------hhhhHHHHHHhhCCCCceECC
Confidence 999753110 01121 145777888899999998764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-13 Score=125.70 Aligned_cols=122 Identities=11% Similarity=0.107 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHH-------HHHHHHcCCC-CcEEE
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLT-------EQNAVMHNVA-NQLQV 194 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A-------~~n~~~~~l~-~~i~~ 194 (322)
..++..+++.+... ++.+|||+|||+|.+++.+|...+..+|+|+|+++.+++.| ++|+...++. .++++
T Consensus 228 p~~v~~ml~~l~l~--~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 228 PNFLSDVYQQCQLK--KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHHTTCC--TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 45566666666543 33799999999999999999987777999999999999999 9999888853 56999
Q ss_pred EEccCCCcccccc-cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 195 FHAEIDSKGQVKN-LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 195 ~~~D~~~~~~~~~-l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
+++|. +.. .+-....++||+|++|..... ++ ....+..+.+.|||||
T Consensus 306 i~gD~-----~~~~~~~~~~~~~FDvIvvn~~l~~--------~d-------------------~~~~L~el~r~LKpGG 353 (433)
T 1u2z_A 306 SLKKS-----FVDNNRVAELIPQCDVILVNNFLFD--------ED-------------------LNKKVEKILQTAKVGC 353 (433)
T ss_dssp EESSC-----STTCHHHHHHGGGCSEEEECCTTCC--------HH-------------------HHHHHHHHHTTCCTTC
T ss_pred EEcCc-----cccccccccccCCCCEEEEeCcccc--------cc-------------------HHHHHHHHHHhCCCCe
Confidence 99865 221 000001357999999753311 11 3366788999999999
Q ss_pred EEEEE
Q psy7093 274 SIFLE 278 (322)
Q Consensus 274 ~l~~e 278 (322)
.+++.
T Consensus 354 ~lVi~ 358 (433)
T 1u2z_A 354 KIISL 358 (433)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 99874
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=116.59 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
...+.+.+.+.+... ++.+|||+|||+|.++..++. ++.+|+|+|+|+.+++.|+.+. +++++++|+
T Consensus 19 ~~~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~-- 85 (261)
T 3ege_A 19 DIRIVNAIINLLNLP--KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYA-- 85 (261)
T ss_dssp CHHHHHHHHHHHCCC--TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCT--
T ss_pred cHHHHHHHHHHhCCC--CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECch--
Confidence 345777777777643 237999999999999999997 4789999999999998876543 599999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
. .++ ++.++||+|+++..+....+ ...+++++.++|| ||++++
T Consensus 86 ---~-~~~--~~~~~fD~v~~~~~l~~~~~--------------------------~~~~l~~~~~~Lk-gG~~~~ 128 (261)
T 3ege_A 86 ---E-NLA--LPDKSVDGVISILAIHHFSH--------------------------LEKSFQEMQRIIR-DGTIVL 128 (261)
T ss_dssp ---T-SCC--SCTTCBSEEEEESCGGGCSS--------------------------HHHHHHHHHHHBC-SSCEEE
T ss_pred ---h-hCC--CCCCCEeEEEEcchHhhccC--------------------------HHHHHHHHHHHhC-CcEEEE
Confidence 2 232 34678999999866543322 3578999999999 996555
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=115.89 Aligned_cols=148 Identities=13% Similarity=0.060 Sum_probs=95.7
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-----------------CC
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH-----------------NV 188 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~-----------------~l 188 (322)
...+.+.+.....++.+|||+|||+|..+..++. .+..+|+|+|+|+.+++.|++++... +.
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 136 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence 4445555433212347999999999995544443 34679999999999999999865421 10
Q ss_pred C------------CcEEEEEccCCCcccccccCc---CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCC
Q psy7093 189 A------------NQLQVFHAEIDSKGQVKNLQP---DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253 (322)
Q Consensus 189 ~------------~~i~~~~~D~~~~~~~~~l~~---~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~ 253 (322)
. ..++++.+|+ ...++. .++.++||+|+++..+.... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~D~-----~~~~~~~~~~~~~~~fD~V~~~~~l~~~~----------------------~ 189 (289)
T 2g72_A 137 GECWQDKERQLRARVKRVLPIDV-----HQPQPLGAGSPAPLPADALVSAFCLEAVS----------------------P 189 (289)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCT-----TSSSTTCSSCSSCSSEEEEEEESCHHHHC----------------------S
T ss_pred ccchhhhHHHHHhhhceEEeccc-----CCCCCccccccCCCCCCEEEehhhhhhhc----------------------C
Confidence 0 0156777888 332221 13456799999985432100 0
Q ss_pred hhHHHHHHHHHHhccCccCcEEEEEE----------------cCCCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 254 GLNIIKPICVFGSNYLKPNGSIFLET----------------NHDHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 254 gl~~~~~~l~~~~~~Lk~gG~l~~e~----------------~~~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
.+.-+..+++++.++|||||.+++.. .....+.+.+++++.| |..+.+
T Consensus 190 ~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG----f~~~~~ 253 (289)
T 2g72_A 190 DLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG----YKVRDL 253 (289)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT----EEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcC----CeEEEe
Confidence 11225689999999999999998841 1124788999999986 665543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=119.29 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=79.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccCCCcccccccCcCcCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN-----QLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~-----~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
+.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|++++...+... ++++.+.|+........++..++.
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 479999999999766666554 35799999999999999999887665321 267888887211100111111345
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
++||+|+|.-..+...+.. + ...+++++.++|||||++++.+.+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~----~-------------------~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPR----H-------------------YATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCSTT----T-------------------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCHH----H-------------------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999964332111000 0 248999999999999999987754
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=119.62 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=91.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C--------------------------CC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V--------------------------AN 190 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l--------------------------~~ 190 (322)
++.+|||+|||+|.++..++.. ...+|+|+|+|+.+++.|+++++... + ..
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 3468999999999887766655 23479999999999999999875431 0 01
Q ss_pred cEE-EEEccCCCcccccccCc-CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhcc
Q psy7093 191 QLQ-VFHAEIDSKGQVKNLQP-DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY 268 (322)
Q Consensus 191 ~i~-~~~~D~~~~~~~~~l~~-~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~ 268 (322)
++. ++++|+ .+..+. ....++||+|+++--.+... + -.+-+..+++++.++
T Consensus 134 ~i~~~~~~D~-----~~~~~~~~~~~~~fD~V~~~~~l~~i~------~----------------~~~~~~~~l~~i~r~ 186 (263)
T 2a14_A 134 AVKRVLKCDV-----HLGNPLAPAVLPLADCVLTLLAMECAC------C----------------SLDAYRAALCNLASL 186 (263)
T ss_dssp HEEEEEECCT-----TSSSTTTTCCCCCEEEEEEESCHHHHC------S----------------SHHHHHHHHHHHHTT
T ss_pred hhheEEeccc-----cCCCCCCccccCCCCEeeehHHHHHhc------C----------------CHHHHHHHHHHHHHH
Confidence 244 889998 332111 01246899999964322100 0 011256899999999
Q ss_pred CccCcEEEEEEc--C--------------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 269 LKPNGSIFLETN--H--------------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 269 Lk~gG~l~~e~~--~--------------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
|||||.+++... . -..+.+.+++.+.| |..+++.
T Consensus 187 LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aG----F~i~~~~ 236 (263)
T 2a14_A 187 LKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAG----FDIEQLL 236 (263)
T ss_dssp EEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTT----EEEEEEE
T ss_pred cCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCC----CEEEEEe
Confidence 999999988631 1 14678899999886 6655543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=113.21 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=78.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH----HHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA----VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~----~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
.+|||+|||+|.++..++..+|+.+|+|+|+|+.+++.+.+++ ...++. +++++++|+ .+ ++ +..+.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~-----~~-l~--~~~~~ 99 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATA-----ER-LP--PLSGV 99 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCS-----TT-CC--SCCCE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecch-----hh-CC--CCCCC
Confidence 7899999999999999999999999999999999888543333 334544 599999998 32 33 23344
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|.|+...||.... ..+-+. ...+++++.++|||||.+++.++
T Consensus 100 -d~v~~~~~~~~~~---------~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 100 -GELHVLMPWGSLL---------RGVLGS------------SPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp -EEEEEESCCHHHH---------HHHHTS------------SSHHHHHHHHTEEEEEEEEEEEE
T ss_pred -CEEEEEccchhhh---------hhhhcc------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 8877766543210 000000 13788999999999999999764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-12 Score=110.27 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++. .+++++++|+ .+ ++ ..++||+
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~-----~~-~~---~~~~~D~ 103 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL------PDATLHQGDM-----RD-FR---LGRKFSA 103 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC------TTCEEEECCT-----TT-CC---CSSCEEE
T ss_pred CCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC------CCCEEEECCH-----HH-cc---cCCCCcE
Confidence 3799999999999999999984 48999999999999998764 2489999998 32 22 2468999
Q ss_pred EEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+|.. .... +.. .+....+++.+.++|+|||.+++.
T Consensus 104 v~~~~~~~~~------~~~-----------------~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 104 VVSMFSSVGY------LKT-----------------TEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp EEECTTGGGG------CCS-----------------HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EEEcCchHhh------cCC-----------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99621 1111 100 012458999999999999999885
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.8e-13 Score=111.65 Aligned_cols=143 Identities=11% Similarity=0.108 Sum_probs=90.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccCCCcccccccC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK---------LKAIAIDQSKHACDLTEQNAVMHNVANQLQVF-HAEIDSKGQVKNLQ 209 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~---------~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~-~~D~~~~~~~~~l~ 209 (322)
+.+|||+|||+|.++..+++.++. .+|+|+|+|+.+ .. .+++++ ++|+.+......+.
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHHH
Confidence 379999999999999999999765 799999999831 12 348888 88872211000000
Q ss_pred cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-HHHHH
Q psy7093 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-LDKIK 288 (322)
Q Consensus 210 ~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-~~~~~ 288 (322)
..+..++||+|++|++....... ....+ .....+..+++.+.++|+|||.+++.+.... ...+.
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~------~~~~~---------~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 155 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFR------DLDHD---------RLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQ 155 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCH------HHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHH
T ss_pred HhcCCCCCcEEEeCCCCCCCCCc------ccCHH---------HHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHH
Confidence 01123589999999754332210 00000 0122346889999999999999999865433 34555
Q ss_pred HHHHHcCCCCceeeEEEecCCCCCCe
Q psy7093 289 EWLGICGHHMKLKLVENYKDFNNKDR 314 (322)
Q Consensus 289 ~~l~~~~~~~~~~~v~~~~D~~g~~R 314 (322)
+.+... |..+.++++..++.+
T Consensus 156 ~~l~~~-----f~~v~~~~~~~~~~~ 176 (196)
T 2nyu_A 156 RRLTEE-----FQNVRIIKPEASRKE 176 (196)
T ss_dssp HHHHHH-----EEEEEEECCC-----
T ss_pred HHHHHH-----hcceEEECCcccCcc
Confidence 665553 678888888776643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=111.09 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=80.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. ++.+|+|+|+|+.+++.|++++...+ .+++++++|+ .+ ++ ++.++||+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~-----~~-~~--~~~~~fD~ 92 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDI-----RK-LP--FKDESMSF 92 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCT-----TS-CC--SCTTCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECch-----hh-CC--CCCCceeE
Confidence 379999999999985555544 46799999999999999999988766 3488999998 32 22 34578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++.+.... +. +....+++.+.++|+|||.+++..
T Consensus 93 v~~~~~l~~~------~~------------------~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 93 VYSYGTIFHM------RK------------------NDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp EEECSCGGGS------CH------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcChHHhC------CH------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9997443221 11 114588999999999999998865
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=115.56 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=82.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
.++.+++.+... ++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+.... +.....++
T Consensus 33 ~~~~il~~l~l~--~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~----v~~~~~~~----- 99 (261)
T 3iv6_A 33 DRENDIFLENIV--PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRC----VTIDLLDI----- 99 (261)
T ss_dssp HHHHHHHTTTCC--TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSC----CEEEECCT-----
T ss_pred HHHHHHHhcCCC--CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcc----ceeeeeec-----
Confidence 344555555443 2379999999999999999987 6799999999999999999875431 22222333
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
...... ...++||+|++|..+.... . +-.+.++..+.++| |||.+++.+....
T Consensus 100 ~~~~~~-~~~~~fD~Vv~~~~l~~~~------~------------------~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 100 TAEIPK-ELAGHFDFVLNDRLINRFT------T------------------EEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp TSCCCG-GGTTCCSEEEEESCGGGSC------H------------------HHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred cccccc-ccCCCccEEEEhhhhHhCC------H------------------HHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 000000 1246899999987654311 1 11357888888999 9999999876543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.6e-12 Score=108.68 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=76.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. + .+++++|+|+.+++.++++. .++.++|+ .+. ...+..++||+
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~-----~~~-~~~~~~~~fD~ 96 (230)
T 3cc8_A 33 WKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDI-----ETM-DMPYEEEQFDC 96 (230)
T ss_dssp CSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--------SEEEESCT-----TTC-CCCSCTTCEEE
T ss_pred CCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--------CcEEEcch-----hhc-CCCCCCCccCE
Confidence 479999999999999999988 4 89999999999999988653 26788888 321 11234578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+++..+....+ ...+++.+.++|+|||.+++.+.
T Consensus 97 v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 97 VIFGDVLEHLFD--------------------------PWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp EEEESCGGGSSC--------------------------HHHHHHHTGGGEEEEEEEEEEEE
T ss_pred EEECChhhhcCC--------------------------HHHHHHHHHHHcCCCCEEEEEeC
Confidence 999754432221 24789999999999999999763
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=115.52 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=90.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN------VANQLQVFHA 197 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~------l~~~i~~~~~ 197 (322)
.+++.+++.+.....++.+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++....+ ...+++++++
T Consensus 19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 3444444444332113379999999999999999885 57899999999999999999887542 2235999999
Q ss_pred cCCCccccccc-CcCc--CCCCeeEEEEcCCCCCC-CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 198 EIDSKGQVKNL-QPDL--LEQKFDLVVSNPPYVPS-LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 198 D~~~~~~~~~l-~~~~--~~~~fDlIv~NPPy~~~-~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|+ .... ...+ ..++||+|+++...+.. .+ ......+++++.++|+|||
T Consensus 98 D~-----~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG 149 (313)
T 3bgv_A 98 DS-----SKELLIDKFRDPQMCFDICSCQFVCHYSFES-----------------------YEQADMMLRNACERLSPGG 149 (313)
T ss_dssp CT-----TTSCSTTTCSSTTCCEEEEEEETCGGGGGGS-----------------------HHHHHHHHHHHHTTEEEEE
T ss_pred cc-----cccchhhhcccCCCCEEEEEEecchhhccCC-----------------------HHHHHHHHHHHHHHhCCCc
Confidence 98 3221 0012 23589999997654321 10 1124589999999999999
Q ss_pred EEEEEEcCC
Q psy7093 274 SIFLETNHD 282 (322)
Q Consensus 274 ~l~~e~~~~ 282 (322)
.+++.+...
T Consensus 150 ~li~~~~~~ 158 (313)
T 3bgv_A 150 YFIGTTPNS 158 (313)
T ss_dssp EEEEEEECH
T ss_pred EEEEecCCh
Confidence 999977543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=117.12 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=81.1
Q ss_pred CeEEEEcCchhH----HHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHH--------------------------c
Q psy7093 141 TRMIEIGSGTGA----ITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVM--------------------------H 186 (322)
Q Consensus 141 ~~iLDlg~GsG~----~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~--------------------------~ 186 (322)
.+|||+|||||. +++.++..++ +.+|+|+|+|+.+++.|++++.. .
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 186 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 186 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence 799999999998 7777777654 46999999999999999988521 0
Q ss_pred C----CCCcEEEEEccCCCcccccccCcCcC-CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 187 N----VANQLQVFHAEIDSKGQVKNLQPDLL-EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 187 ~----l~~~i~~~~~D~~~~~~~~~l~~~~~-~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
. +.++|.|.++|+ .+. + ++ .++||+|+|.-- +..+.++. .+++
T Consensus 187 ~v~~~lr~~V~F~~~dl-----~~~-~--~~~~~~fDlI~crnv------liyf~~~~------------------~~~v 234 (274)
T 1af7_A 187 RVRQELANYVEFSSVNL-----LEK-Q--YNVPGPFDAIFCRNV------MIYFDKTT------------------QEDI 234 (274)
T ss_dssp EECHHHHTTEEEEECCT-----TCS-S--CCCCCCEEEEEECSS------GGGSCHHH------------------HHHH
T ss_pred eechhhcccCeEEeccc-----CCC-C--CCcCCCeeEEEECCc------hHhCCHHH------------------HHHH
Confidence 0 013699999999 442 1 12 468999999322 22222221 4689
Q ss_pred HHHHhccCccCcEEEEEEcCCC
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
++.+.+.|+|||+++++++...
T Consensus 235 l~~~~~~L~pgG~L~lg~sE~~ 256 (274)
T 1af7_A 235 LRRFVPLLKPDGLLFAGHSENF 256 (274)
T ss_dssp HHHHGGGEEEEEEEEECTTCCC
T ss_pred HHHHHHHhCCCcEEEEEecccc
Confidence 9999999999999999776654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=117.91 Aligned_cols=93 Identities=29% Similarity=0.386 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.+++++...+..++++++++|+
T Consensus 14 ~~i~~~i~~~~~~~~--~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~--- 86 (285)
T 1zq9_A 14 PLIINSIIDKAALRP--TDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV--- 86 (285)
T ss_dssp HHHHHHHHHHTCCCT--TCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT---
T ss_pred HHHHHHHHHhcCCCC--CCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce---
Confidence 446677777765542 379999999999999999998 5799999999999999999987766656799999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
.+. ....||+|++|+||...
T Consensus 87 --~~~-----~~~~fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 87 --LKT-----DLPFFDTCVANLPYQIS 106 (285)
T ss_dssp --TTS-----CCCCCSEEEEECCGGGH
T ss_pred --ecc-----cchhhcEEEEecCcccc
Confidence 332 12379999999999754
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=118.35 Aligned_cols=91 Identities=29% Similarity=0.460 Sum_probs=69.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+.... +.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++|+...+. ++++++++|+
T Consensus 29 ~i~~~i~~~~~~~~--~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~---- 99 (299)
T 2h1r_A 29 GILDKIIYAAKIKS--SDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDA---- 99 (299)
T ss_dssp HHHHHHHHHHCCCT--TCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----C----
T ss_pred HHHHHHHHhcCCCC--cCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECch----
Confidence 45566666665432 379999999999999999987 67999999999999999999987776 4699999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
.+. +..+||+|++||||...
T Consensus 100 -~~~-----~~~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 100 -IKT-----VFPKFDVCTANIPYKIS 119 (299)
T ss_dssp -CSS-----CCCCCSEEEEECCGGGH
T ss_pred -hhC-----CcccCCEEEEcCCcccc
Confidence 332 23479999999999753
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-12 Score=107.04 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=77.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||+|.++..+ +..+++|+|+|+.+++.|+++. .+++++++|+ . .++ +..++||
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~-----~-~~~--~~~~~fD 97 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWG-----E-ALP--FPGESFD 97 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCT-----T-SCC--SCSSCEE
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEccc-----c-cCC--CCCCcEE
Confidence 3479999999999998776 2238999999999999999876 3488999998 2 222 3457899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+|+++.......+ ...+++++.++|+|||.+++.+...
T Consensus 98 ~v~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 98 VVLLFTTLEFVED--------------------------VERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp EEEEESCTTTCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEcChhhhcCC--------------------------HHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999755433221 3478999999999999999876544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=107.08 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=92.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++.. +|+|+|+.+++.|+++ +++++++|+ .. ++ +..++||+|
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--------~~~~~~~d~-----~~-~~--~~~~~fD~v 106 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--------GVFVLKGTA-----EN-LP--LKDESFDFA 106 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--------TCEEEECBT-----TB-CC--SCTTCEEEE
T ss_pred CcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--------CCEEEEccc-----cc-CC--CCCCCeeEE
Confidence 78999999999999887654 9999999999999876 378899998 22 22 245689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-------------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH------------------- 281 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~------------------- 281 (322)
+++..+....+ ...+++.+.++|+|||.+++....
T Consensus 107 ~~~~~l~~~~~--------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T 1vlm_A 107 LMVTTICFVDD--------------------------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFY 160 (219)
T ss_dssp EEESCGGGSSC--------------------------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCS
T ss_pred EEcchHhhccC--------------------------HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchh
Confidence 99755432211 347889999999999999986532
Q ss_pred -----CCHHHHHHHHHHcCCCCceeeEEEecCCCCCC
Q psy7093 282 -----DHLDKIKEWLGICGHHMKLKLVENYKDFNNKD 313 (322)
Q Consensus 282 -----~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~ 313 (322)
...+.+.+++++.| |..+++..+..+.+
T Consensus 161 ~~~~~~~~~~l~~~l~~~G----f~~~~~~~~~~~~p 193 (219)
T 1vlm_A 161 KNARFFSTEELMDLMRKAG----FEEFKVVQTLFKHP 193 (219)
T ss_dssp TTCCCCCHHHHHHHHHHTT----CEEEEEEEECCSCG
T ss_pred cccccCCHHHHHHHHHHCC----CeEEEEecccCCCC
Confidence 14577888898886 78777776665543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-11 Score=114.54 Aligned_cols=138 Identities=13% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++.+|+.+++++|++ .++. +.++...++.++++++.+|+ ++.+ + +||+
T Consensus 185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~-----~~~~----p--~~D~ 250 (348)
T 3lst_A 185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDF-----LREV----P--HADV 250 (348)
T ss_dssp SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCT-----TTCC----C--CCSE
T ss_pred CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCC-----CCCC----C--CCcE
Confidence 379999999999999999999999999999994 4444 33444445567899999999 5332 3 7999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-------------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN------------------- 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~------------------- 280 (322)
|+++-..+.. +.. -...+++++.+.|||||.+++.-.
T Consensus 251 v~~~~vlh~~------~d~------------------~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~ 306 (348)
T 3lst_A 251 HVLKRILHNW------GDE------------------DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMML 306 (348)
T ss_dssp EEEESCGGGS------CHH------------------HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHH
T ss_pred EEEehhccCC------CHH------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhh
Confidence 9996544322 111 135899999999999999877321
Q ss_pred ------CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 281 ------HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 281 ------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
....+...+++++.| |..++++. ..+..-++.+++
T Consensus 307 ~~~~~~~~t~~e~~~ll~~aG----f~~~~~~~-~~~~~~vie~~p 347 (348)
T 3lst_A 307 AARTGQERTAAELEPLFTAAG----LRLDRVVG-TSSVMSIAVGVP 347 (348)
T ss_dssp HTTSCCCCBHHHHHHHHHHTT----EEEEEEEE-CSSSCEEEEEEE
T ss_pred hcCCCcCCCHHHHHHHHHHCC----CceEEEEE-CCCCcEEEEEEe
Confidence 123567788888886 88888887 445555665554
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=110.64 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=78.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccC-cCcC-CCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ-PDLL-EQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~-~~~~-~~~f 217 (322)
+.+|||+|||+|.++..++...+ +|+|+|+|+.+++.|++++. ..+++++++|+ .+... ..+. ...|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~-----~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT----AANISYRLLDG-----LVPEQAAQIHSEIGD 125 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC----CTTEEEEECCT-----TCHHHHHHHHHHHCS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc----ccCceEEECcc-----cccccccccccccCc
Confidence 37899999999999999999854 89999999999999998762 23699999998 22110 0000 1248
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETNHD 282 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~~~ 282 (322)
|+|+++..++... ++ -...+++.+.++|+|||.+++ +....
T Consensus 126 d~v~~~~~~~~~~------~~------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 167 (245)
T 3ggd_A 126 ANIYMRTGFHHIP------VE------------------KRELLGQSLRILLGKQGAMYLIELGTG 167 (245)
T ss_dssp CEEEEESSSTTSC------GG------------------GHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred cEEEEcchhhcCC------HH------------------HHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999986544322 11 135899999999999998554 55443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-11 Score=110.01 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=104.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|+|||+|.++..+++++|+.+++..|. |.+++.|++++...+ .+|++++.+|+ ++.. ...+|++
T Consensus 181 ~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~-----~~~~-----~~~~D~~ 248 (353)
T 4a6d_A 181 PLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDF-----FKDP-----LPEADLY 248 (353)
T ss_dssp SEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCT-----TTSC-----CCCCSEE
T ss_pred CeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCcc-----ccCC-----CCCceEE
Confidence 6899999999999999999999999999998 789999998876444 57899999999 5431 2357998
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EE--c-----------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ET--N----------------- 280 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~--~----------------- 280 (322)
++.-- ++.++++. ..++++++.+.|+|||.+++ |. +
T Consensus 249 ~~~~v------lh~~~d~~------------------~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml 304 (353)
T 4a6d_A 249 ILARV------LHDWADGK------------------CSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNML 304 (353)
T ss_dssp EEESS------GGGSCHHH------------------HHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHH
T ss_pred Eeeee------cccCCHHH------------------HHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHH
Confidence 87322 22222221 35899999999999998766 32 0
Q ss_pred ------CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 281 ------HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 281 ------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.+..++.++++++.| |+.+++++- .+...+|+++|
T Consensus 305 ~~~~g~ert~~e~~~ll~~AG----f~~v~v~~~-~~~~~~i~ArK 345 (353)
T 4a6d_A 305 VQTEGQERTPTHYHMLLSSAG----FRDFQFKKT-GAIYDAILARK 345 (353)
T ss_dssp HSSSCCCCCHHHHHHHHHHHT----CEEEEEECC-SSSCEEEEEEC
T ss_pred HhCCCcCCCHHHHHHHHHHCC----CceEEEEEc-CCceEEEEEEe
Confidence 123466778888886 799998874 45567788876
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-11 Score=109.75 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=95.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++++... ++ ..+++++.+|. .+.+ ++
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~-----~~~~------~~ 139 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL-----DLDI------KK 139 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG-----GSCC------CC
T ss_pred CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH-----HHHH------hh
Confidence 479999999999999999998 7 89999999999999999876431 11 35799999998 4322 68
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC--CHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD--HLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~--~~~~~~~~l~~~ 294 (322)
||+|++|.+ + | ..+++.+.+.|+|||++++..+.. +...+..+.+..
T Consensus 140 fD~Ii~d~~-----d------------p--------------~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l 188 (262)
T 2cmg_A 140 YDLIFCLQE-----P------------D--------------IHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM 188 (262)
T ss_dssp EEEEEESSC-----C------------C--------------HHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHH
T ss_pred CCEEEECCC-----C------------h--------------HHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH
Confidence 999999742 0 1 127788999999999999976542 344454444332
Q ss_pred CCCCceeeEEEecCC---CCCCeEEEEEE
Q psy7093 295 GHHMKLKLVENYKDF---NNKDRFVELKL 320 (322)
Q Consensus 295 ~~~~~~~~v~~~~D~---~g~~R~~~~~~ 320 (322)
.. .|..+..+... .|..-|+.+.|
T Consensus 189 ~~--~F~~~~~~~~~vP~~g~~~~~~as~ 215 (262)
T 2cmg_A 189 GG--VFSVAMPFVAPLRILSNKGYIYASF 215 (262)
T ss_dssp HT--TCSEEEEECCTTCTTCCEEEEEEES
T ss_pred HH--hCCceEEEEEccCCCcccEEEEeeC
Confidence 21 25556555433 45555666554
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-11 Score=120.78 Aligned_cols=130 Identities=15% Similarity=0.220 Sum_probs=96.6
Q ss_pred CCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc------
Q psy7093 114 PVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMH------ 186 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~------ 186 (322)
+.|.| |.++..++.+++.+.... +.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++...
T Consensus 699 gtFsP-PL~eqRle~LLelL~~~~--g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~ 775 (950)
T 3htx_A 699 AFFKP-PLSKQRVEYALKHIRESS--ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEAC 775 (950)
T ss_dssp CCSSS-CHHHHHHHHHHHHHHHSC--CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCS
T ss_pred CcCCc-hHHHHHHHHHHHHhcccC--CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhc
Confidence 34443 667777888888876543 3799999999999999999986 4479999999999999999976543
Q ss_pred CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh
Q psy7093 187 NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS 266 (322)
Q Consensus 187 ~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~ 266 (322)
++. +++++++|+ .+ ++ ...++||+|+++-.+.. ++... ...+++.+.
T Consensus 776 gl~-nVefiqGDa-----~d-Lp--~~d~sFDlVV~~eVLeH------L~dp~------------------l~~~L~eI~ 822 (950)
T 3htx_A 776 NVK-SATLYDGSI-----LE-FD--SRLHDVDIGTCLEVIEH------MEEDQ------------------ACEFGEKVL 822 (950)
T ss_dssp SCS-EEEEEESCT-----TS-CC--TTSCSCCEEEEESCGGG------SCHHH------------------HHHHHHHHH
T ss_pred CCC-ceEEEECch-----Hh-CC--cccCCeeEEEEeCchhh------CChHH------------------HHHHHHHHH
Confidence 333 699999998 32 22 24578999999644332 22211 346889999
Q ss_pred ccCccCcEEEEEEc
Q psy7093 267 NYLKPNGSIFLETN 280 (322)
Q Consensus 267 ~~Lk~gG~l~~e~~ 280 (322)
++|+|| .+++.+.
T Consensus 823 RvLKPG-~LIISTP 835 (950)
T 3htx_A 823 SLFHPK-LLIVSTP 835 (950)
T ss_dssp HTTCCS-EEEEEEC
T ss_pred HHcCCC-EEEEEec
Confidence 999999 7777653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-12 Score=119.72 Aligned_cols=81 Identities=14% Similarity=0.254 Sum_probs=67.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|||+|||+|..++.+++. +.+|+++|+|+.+++.|++|+..+ ++ ++++++++|+ .+.++. ...++|
T Consensus 94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da-----~~~L~~-~~~~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDF-----KEYLPL-IKTFHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCG-----GGSHHH-HHHHCC
T ss_pred CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcH-----HHhhhh-ccCCCc
Confidence 379999999999999999887 679999999999999999999988 87 5699999999 543321 112579
Q ss_pred eEEEEcCCCCCC
Q psy7093 218 DLVVSNPPYVPS 229 (322)
Q Consensus 218 DlIv~NPPy~~~ 229 (322)
|+|++||||...
T Consensus 165 DvV~lDPPrr~~ 176 (410)
T 3ll7_A 165 DYIYVDPARRSG 176 (410)
T ss_dssp SEEEECCEEC--
T ss_pred eEEEECCCCcCC
Confidence 999999999874
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=110.15 Aligned_cols=93 Identities=16% Similarity=0.305 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.+++++.. .++++++++|+
T Consensus 15 ~~i~~~iv~~~~~~~--~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~--- 84 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQK--TDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDA--- 84 (255)
T ss_dssp HHHHHHHHHHHCCCT--TCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCT---
T ss_pred HHHHHHHHHhcCCCC--cCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcch---
Confidence 345667777776543 379999999999999999988 57999999999999999999864 24699999999
Q ss_pred ccccc-cCcCcCCCCeeEEEEcCCCCC
Q psy7093 203 GQVKN-LQPDLLEQKFDLVVSNPPYVP 228 (322)
Q Consensus 203 ~~~~~-l~~~~~~~~fDlIv~NPPy~~ 228 (322)
++. ++.....++|| ||+||||.-
T Consensus 85 --~~~~~~~~~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 85 --LQFDFSSVKTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp --TTCCGGGSCCSSCEE-EEEECCHHH
T ss_pred --HhCCHHHhccCCCeE-EEecCCccc
Confidence 332 11111235788 999999964
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-12 Score=120.15 Aligned_cols=150 Identities=11% Similarity=0.193 Sum_probs=99.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++.+... ++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++ +......++..+.
T Consensus 95 ~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~----- 161 (416)
T 4e2x_A 95 LARDFLATELTG--PDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKAT----- 161 (416)
T ss_dssp HHHHHHHTTTCS--SSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHH-----
T ss_pred HHHHHHHHhCCC--CCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCCcceeeechhh-----
Confidence 344444444432 3379999999999999999987 67999999999999998865 3321111111111
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC---
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--- 281 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--- 281 (322)
.+.++ +..++||+|+++-.+....+ ...+++.+.++|||||++++++..
T Consensus 162 ~~~l~--~~~~~fD~I~~~~vl~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~ 213 (416)
T 4e2x_A 162 ADDVR--RTEGPANVIYAANTLCHIPY--------------------------VQSVLEGVDALLAPDGVFVFEDPYLGD 213 (416)
T ss_dssp HHHHH--HHHCCEEEEEEESCGGGCTT--------------------------HHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred Hhhcc--cCCCCEEEEEECChHHhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEeCChHH
Confidence 12221 23578999999755433221 458999999999999999998642
Q ss_pred -----------------CCHHHHHHHHHHcCCCCceeeEEEec--CCCCCCeEEEEE
Q psy7093 282 -----------------DHLDKIKEWLGICGHHMKLKLVENYK--DFNNKDRFVELK 319 (322)
Q Consensus 282 -----------------~~~~~~~~~l~~~~~~~~~~~v~~~~--D~~g~~R~~~~~ 319 (322)
.....+.+++++.| |..+.+.. ...|..++...+
T Consensus 214 ~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aG----f~~~~~~~~~~~~g~l~~~~~~ 266 (416)
T 4e2x_A 214 IVAKTSFDQIFDEHFFLFSATSVQGMAQRCG----FELVDVQRLPVHGGEVRYTLAR 266 (416)
T ss_dssp HHHHTCGGGCSTTCCEECCHHHHHHHHHHTT----EEEEEEEEECGGGSEEEEEEEE
T ss_pred hhhhcchhhhhhhhhhcCCHHHHHHHHHHcC----CEEEEEEEccCCCCEEEEEEEe
Confidence 22567899999986 66665543 344555555443
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=119.43 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=100.5
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHH
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-------------KLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-------------~~~v~~vDis~~al~~A~~ 181 (322)
.|+||+-.+.+ ++.+... ++.+|+|++||||.+.+.+++.+. ...++|+|+++.+..+|+.
T Consensus 199 fyTP~~Vv~lm----v~l~~p~--~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m 272 (530)
T 3ufb_A 199 FYTPRPVVRFM----VEVMDPQ--LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM 272 (530)
T ss_dssp CCCCHHHHHHH----HHHHCCC--TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred ECCcHHHHHHH----HHhhccC--CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence 55676655544 4445443 236899999999999988876431 2469999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccc-cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKN-LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~-l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~ 260 (322)
|+..++... ..+.++|. +.. ........+||+|++||||..... ......-+.. .-..+..+ .
T Consensus 273 Nl~lhg~~~-~~I~~~dt-----L~~~~~~~~~~~~fD~Il~NPPf~~~~~-----~~~~~~~~~~-~~~~~~~~----~ 336 (530)
T 3ufb_A 273 NLLLHGLEY-PRIDPENS-----LRFPLREMGDKDRVDVILTNPPFGGEEE-----KGILGNFPED-MQTAETAM----L 336 (530)
T ss_dssp HHHHHTCSC-CEEECSCT-----TCSCGGGCCGGGCBSEEEECCCSSCBCC-----HHHHTTSCGG-GCCCBHHH----H
T ss_pred HHHhcCCcc-cccccccc-----ccCchhhhcccccceEEEecCCCCcccc-----ccccccCchh-cccchhHH----H
Confidence 999988753 56788887 332 111123457999999999964332 1111111110 11112222 3
Q ss_pred HHHHHhccC-------ccCcEEEEEEcC-----C-CHHHHHHHHHHcC
Q psy7093 261 ICVFGSNYL-------KPNGSIFLETNH-----D-HLDKIKEWLGICG 295 (322)
Q Consensus 261 ~l~~~~~~L-------k~gG~l~~e~~~-----~-~~~~~~~~l~~~~ 295 (322)
++..+.+.| ++||.+.+.++. . ....+++.+-+.+
T Consensus 337 Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~ 384 (530)
T 3ufb_A 337 FLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNF 384 (530)
T ss_dssp HHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcC
Confidence 445555555 489999887753 2 2456777776654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-11 Score=103.29 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=89.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++ .+|+|+|+|+. ++.+.++|+ .+ ++ +..++||+
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~----------------~~~~~~~d~-----~~-~~--~~~~~fD~ 118 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-----NPVHCFDLASL----------------DPRVTVCDM-----AQ-VP--LEDESVDV 118 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-----SCEEEEESSCS----------------STTEEESCT-----TS-CS--CCTTCEEE
T ss_pred CCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC----------------CceEEEecc-----cc-CC--CCCCCEeE
Confidence 3789999999999988773 57999999986 366788998 32 22 34578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cC--CCHHHHHHHHHHcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NH--DHLDKIKEWLGICGH 296 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~--~~~~~~~~~l~~~~~ 296 (322)
|+++..++. .+ ...+++.+.++|+|||.+++.. .. .....+.+++++.|
T Consensus 119 v~~~~~l~~-~~--------------------------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~G- 170 (215)
T 2zfu_A 119 AVFCLSLMG-TN--------------------------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLG- 170 (215)
T ss_dssp EEEESCCCS-SC--------------------------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTT-
T ss_pred EEEehhccc-cC--------------------------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCC-
Confidence 999876542 11 3478899999999999988843 22 36788999999986
Q ss_pred CCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 297 HMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 297 ~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
|..+.. ....+...++.++|.
T Consensus 171 ---f~~~~~-~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 171 ---FKIVSK-DLTNSHFFLFDFQKT 191 (215)
T ss_dssp ---EEEEEE-ECCSTTCEEEEEEEC
T ss_pred ---CEEEEE-ecCCCeEEEEEEEec
Confidence 666553 334555667777764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.7e-11 Score=106.96 Aligned_cols=130 Identities=10% Similarity=0.063 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCch---hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGT---GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~Gs---G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
.++..+++.+.... ...+|||+|||+ |.++..+++..|+.+|+++|+|+.+++.|++++.. ..+++++++|+.
T Consensus 63 ~~~~~~~~~l~~~~-~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~ 138 (274)
T 2qe6_A 63 KVLVRGVRFLAGEA-GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVR 138 (274)
T ss_dssp HHHHHHHHHHHTTT-CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTT
T ss_pred HHHHHHHHHHhhcc-CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCC
Confidence 34444555544211 126899999999 99888777778899999999999999999998743 346999999993
Q ss_pred CcccccccC---cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 201 SKGQVKNLQ---PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 201 ~~~~~~~l~---~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+....-..+ ..+...+||+|+++--++...+ + -...+++++.+.|+|||++++
T Consensus 139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d------~------------------~~~~~l~~~~~~L~pGG~l~i 194 (274)
T 2qe6_A 139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSP------D------------------VVDRVVGAYRDALAPGSYLFM 194 (274)
T ss_dssp CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCT------T------------------THHHHHHHHHHHSCTTCEEEE
T ss_pred CchhhhccchhhccCCCCCCEEEEEechhhhCCc------H------------------HHHHHHHHHHHhCCCCcEEEE
Confidence 211000000 0122357999999754432221 0 035899999999999999998
Q ss_pred EEcC
Q psy7093 278 ETNH 281 (322)
Q Consensus 278 e~~~ 281 (322)
....
T Consensus 195 ~~~~ 198 (274)
T 2qe6_A 195 TSLV 198 (274)
T ss_dssp EEEB
T ss_pred EEec
Confidence 7643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=108.75 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=76.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++.+++.+|+|+|+|+.+++.|+++. .++.+..+|+ . .++ +..++||+
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~-----~-~~~--~~~~~fD~ 151 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASS-----H-RLP--FSDTSMDA 151 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCT-----T-SCS--BCTTCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcch-----h-hCC--CCCCceeE
Confidence 37999999999999999999888889999999999999998764 2478899998 2 222 24578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|+++.+- .+++++.++|+|||.+++....
T Consensus 152 v~~~~~~---------------------------------~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 152 IIRIYAP---------------------------------CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp EEEESCC---------------------------------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEeCCh---------------------------------hhHHHHHHhcCCCcEEEEEEcC
Confidence 9996320 2456788999999999987654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.4e-12 Score=115.06 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+..+++.+++.+.... +.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|++|+..++ ++++++++|+
T Consensus 11 ~pvLl~e~l~~L~~~~--g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~-- 84 (301)
T 1m6y_A 11 IPVMVREVIEFLKPED--EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSY-- 84 (301)
T ss_dssp CCTTHHHHHHHHCCCT--TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCG--
T ss_pred cHHHHHHHHHhcCCCC--CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCH--
Confidence 3345666777776542 379999999999999999999888899999999999999999998877 4799999998
Q ss_pred cccccccCcCc---CCCCeeEEEEcCCCC
Q psy7093 202 KGQVKNLQPDL---LEQKFDLVVSNPPYV 227 (322)
Q Consensus 202 ~~~~~~l~~~~---~~~~fDlIv~NPPy~ 227 (322)
..++..+ ...+||.|++|||+.
T Consensus 85 ----~~l~~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 85 ----READFLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp ----GGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred ----HHHHHHHHhcCCCCCCEEEEcCccc
Confidence 2221101 125799999999964
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-11 Score=107.06 Aligned_cols=99 Identities=19% Similarity=0.346 Sum_probs=77.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++.. . .++++|+ . .++ +..++||+
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~-----~-~~~--~~~~~fD~ 117 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKA-----E-DLP--FPSGAFEA 117 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCT-----T-SCC--SCTTCEEE
T ss_pred CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcH-----H-HCC--CCCCCEEE
Confidence 379999999999999999987 6799999999999999998753 1 1778887 2 222 34678999
Q ss_pred EEEcCCCCCC-CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPS-LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~-~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|+++.+.... .+ ...+++++.++|+|||.+++.+.+
T Consensus 118 v~~~~~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 118 VLALGDVLSYVEN--------------------------KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp EEECSSHHHHCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred EEEcchhhhcccc--------------------------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9996432211 10 347899999999999999997754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=109.65 Aligned_cols=92 Identities=23% Similarity=0.352 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +.+|||+|||+|.++..+++. ..+|+++|+|+.+++.+++++... ++++++++|+
T Consensus 36 ~~i~~~Iv~~l~~~~--~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~--- 105 (295)
T 3gru_A 36 KNFVNKAVESANLTK--DDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDA--- 105 (295)
T ss_dssp HHHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCT---
T ss_pred HHHHHHHHHhcCCCC--cCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECch---
Confidence 356677777766543 379999999999999999998 689999999999999999998732 3599999999
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
.+. + ++...||.|++|+||...
T Consensus 106 --l~~-~--~~~~~fD~Iv~NlPy~is 127 (295)
T 3gru_A 106 --LKV-D--LNKLDFNKVVANLPYQIS 127 (295)
T ss_dssp --TTS-C--GGGSCCSEEEEECCGGGH
T ss_pred --hhC-C--cccCCccEEEEeCccccc
Confidence 432 1 234579999999999753
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=110.04 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCeEEEEcCchhHHHHHH----HHhCCCCEE--EEEeCCHHHHHHHHHHHHHc-CCCCcEEE--EEccCCCcccccccC-
Q psy7093 140 PTRMIEIGSGTGAITISL----LKHFPKLKA--IAIDQSKHACDLTEQNAVMH-NVANQLQV--FHAEIDSKGQVKNLQ- 209 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~l----a~~~~~~~v--~~vDis~~al~~A~~n~~~~-~l~~~i~~--~~~D~~~~~~~~~l~- 209 (322)
+.+|||+|||+|.++..+ +..+|...| +|+|.|+.+++.|++++... ++. ++.+ ..+++ +.+.
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~------~~~~~ 125 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETS------SEYQS 125 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCH------HHHHH
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecch------hhhhh
Confidence 368999999999876543 344467755 99999999999999988653 333 3544 34444 1111
Q ss_pred ---cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 210 ---PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 210 ---~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
..+..++||+|+++--.+...+ ...+++++.++|||||.+++..
T Consensus 126 ~~~~~~~~~~fD~V~~~~~l~~~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 126 RMLEKKELQKWDFIHMIQMLYYVKD--------------------------IPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp HHHTTTCCCCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCceeEEEEeeeeeecCC--------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 0123578999999755444332 3478999999999999998743
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=105.78 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=89.5
Q ss_pred CCeEEEEcCch------hHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-EEccCCCcccccccCcC
Q psy7093 140 PTRMIEIGSGT------GAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQV-FHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 140 ~~~iLDlg~Gs------G~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~-~~~D~~~~~~~~~l~~~ 211 (322)
+.+|||+|||| |. ..+++..+ ..+|+|+|+|+. +. ++++ +++|+ .+. +
T Consensus 64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~-~v~~~i~gD~-----~~~-~-- 119 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VS-DADSTLIGDC-----ATV-H-- 119 (290)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BC-SSSEEEESCG-----GGC-C--
T ss_pred CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CC-CCEEEEECcc-----ccC-C--
Confidence 47999999944 77 44566666 689999999987 12 4788 99998 332 1
Q ss_pred cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cCCCHHHHHHH
Q psy7093 212 LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NHDHLDKIKEW 290 (322)
Q Consensus 212 ~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~~~~~~~~~~ 290 (322)
..++||+|++|++....... . ....++.++++.+++.+.++|||||.+++.+ ...+.+.+.++
T Consensus 120 -~~~~fD~Vvsn~~~~~~g~~-~--------------~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~ 183 (290)
T 2xyq_A 120 -TANKWDLIISDMYDPRTKHV-T--------------KENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKL 183 (290)
T ss_dssp -CSSCEEEEEECCCCCC---C-C--------------SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHH
T ss_pred -ccCcccEEEEcCCccccccc-c--------------ccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHH
Confidence 13679999999752211110 0 0123345667899999999999999999966 33445677788
Q ss_pred HHHcCCCCceeeEEEe-cCCCCCCeEEEE
Q psy7093 291 LGICGHHMKLKLVENY-KDFNNKDRFVEL 318 (322)
Q Consensus 291 l~~~~~~~~~~~v~~~-~D~~g~~R~~~~ 318 (322)
++..| |..+++. ......+.+++.
T Consensus 184 l~~~G----F~~v~~~asr~~s~e~~lv~ 208 (290)
T 2xyq_A 184 MGHFS----WWTAFVTNVNASSSEAFLIG 208 (290)
T ss_dssp HTTEE----EEEEEEEGGGTTSSCEEEEE
T ss_pred HHHcC----CcEEEEEEcCCCchheEEec
Confidence 87764 7777765 122224445543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-12 Score=114.45 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=66.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCH-------HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSK-------HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL 213 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~-------~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~ 213 (322)
.+|||+|||+|.+++.+|.. +.+|+++|+|+ .+++.|++|++.+++.++++++++|+ .+.++. +.
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~-----~~~l~~-~~ 156 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA-----AEQMPA-LV 156 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH-----HHHHHH-HH
T ss_pred CeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH-----HHHHHh-hh
Confidence 68999999999999999997 67899999999 99999999998888777799999998 433221 12
Q ss_pred C--CCeeEEEEcCCCCCC
Q psy7093 214 E--QKFDLVVSNPPYVPS 229 (322)
Q Consensus 214 ~--~~fDlIv~NPPy~~~ 229 (322)
. ++||+|++||||...
T Consensus 157 ~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHCCCSEEEECCCC---
T ss_pred ccCCCccEEEECCCCCCc
Confidence 2 589999999999764
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-13 Score=120.05 Aligned_cols=89 Identities=25% Similarity=0.444 Sum_probs=68.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++.+.... +.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++|+. . .++++++++|+
T Consensus 17 ~~~~i~~~~~~~~--~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~----- 84 (245)
T 1yub_A 17 VLNQIIKQLNLKE--TDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDI----- 84 (245)
T ss_dssp THHHHHHHCCCCS--SEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCC-----
T ss_pred HHHHHHHhcCCCC--CCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc--c-CCceEEEECCh-----
Confidence 3455555555432 368999999999999999998 4899999999999999988775 2 35699999998
Q ss_pred ccccCcCcC-CCCeeEEEEcCCCCCC
Q psy7093 205 VKNLQPDLL-EQKFDLVVSNPPYVPS 229 (322)
Q Consensus 205 ~~~l~~~~~-~~~fDlIv~NPPy~~~ 229 (322)
.+. + +. .++| .|++||||...
T Consensus 85 ~~~-~--~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 85 LQF-Q--FPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp TTT-T--CCCSSEE-EEEEECCSSSC
T ss_pred hhc-C--cccCCCc-EEEEeCCcccc
Confidence 332 1 12 2578 89999999864
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.6e-11 Score=106.14 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
.-+.+...+++.+. .+.+|||+|||+|-+++.++...|..+|+++|+++.+++.++.|+..+++. ..+...|.
T Consensus 118 ~lD~fY~~i~~~i~----~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~- 190 (281)
T 3lcv_B 118 HLDEFYRELFRHLP----RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADL- 190 (281)
T ss_dssp GHHHHHHHHGGGSC----CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCT-
T ss_pred hHHHHHHHHHhccC----CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeee-
Confidence 44455555555552 247999999999999999999889999999999999999999999999876 78888998
Q ss_pred CcccccccCcCcCCCCeeEEEEcC
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNP 224 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NP 224 (322)
.... +.++||+++++-
T Consensus 191 ----~~~~----p~~~~DvaL~lk 206 (281)
T 3lcv_B 191 ----LEDR----LDEPADVTLLLK 206 (281)
T ss_dssp ----TTSC----CCSCCSEEEETT
T ss_pred ----cccC----CCCCcchHHHHH
Confidence 4332 467899999963
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.8e-11 Score=105.76 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=71.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+... ++ +|||+|||+|.++..++.. +.+|+|+|+|+.+++.+++++. ..+++++++|+
T Consensus 34 ~i~~~Iv~~~~~~--~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D~---- 100 (271)
T 3fut_A 34 AHLRRIVEAARPF--TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQDA---- 100 (271)
T ss_dssp HHHHHHHHHHCCC--CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTT----TSSEEEEESCG----
T ss_pred HHHHHHHHhcCCC--CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC----CCCEEEEECCh----
Confidence 4556677776554 34 8999999999999999998 5789999999999999998875 24699999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
++.... ....+|.||+|+||.-+.
T Consensus 101 -l~~~~~--~~~~~~~iv~NlPy~iss 124 (271)
T 3fut_A 101 -LLYPWE--EVPQGSLLVANLPYHIAT 124 (271)
T ss_dssp -GGSCGG--GSCTTEEEEEEECSSCCH
T ss_pred -hhCChh--hccCccEEEecCcccccH
Confidence 432110 112689999999997644
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=101.59 Aligned_cols=90 Identities=28% Similarity=0.456 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+... ++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.+++|+... ++++++++|+
T Consensus 16 ~~~~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~--- 85 (244)
T 1qam_A 16 KHNIDKIMTNIRLN--EHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDI--- 85 (244)
T ss_dssp HHHHHHHHTTCCCC--TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCG---
T ss_pred HHHHHHHHHhCCCC--CCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChH---
Confidence 45666777666543 2379999999999999999998 489999999999999999987532 4699999998
Q ss_pred ccccccCcCcC-CCCeeEEEEcCCCCC
Q psy7093 203 GQVKNLQPDLL-EQKFDLVVSNPPYVP 228 (322)
Q Consensus 203 ~~~~~l~~~~~-~~~fDlIv~NPPy~~ 228 (322)
.+. + +. ...| .|++||||..
T Consensus 86 --~~~-~--~~~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 86 --LQF-K--FPKNQSY-KIFGNIPYNI 106 (244)
T ss_dssp --GGC-C--CCSSCCC-EEEEECCGGG
T ss_pred --HhC-C--cccCCCe-EEEEeCCccc
Confidence 332 1 12 2345 7899999964
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=105.45 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=94.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+.+ .+++++.+|+ ++++ +.+ |+
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~-----~~~~----p~~--D~ 264 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDM-----FDGV----PKG--DA 264 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCT-----TTCC----CCC--SE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCC-----CCCC----CCC--CE
Confidence 37999999999999999999999999999999 8888776532 4699999999 5533 333 99
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-Ec------------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-TN------------------ 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~~------------------ 280 (322)
|++.-..+. ++.+ -..++++++.+.|+|||.+++. .-
T Consensus 265 v~~~~vlh~------~~~~------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d 320 (368)
T 3reo_A 265 IFIKWICHD------WSDE------------------HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTD 320 (368)
T ss_dssp EEEESCGGG------BCHH------------------HHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHH
T ss_pred EEEechhhc------CCHH------------------HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhh
Confidence 998543321 1111 1357999999999999988762 21
Q ss_pred -----------CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 281 -----------HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 281 -----------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
....++..+++++.| |..+++..-. +...++.+.|
T Consensus 321 ~~~~~~~~~g~~rt~~e~~~ll~~AG----F~~v~~~~~~-~~~~vie~~k 366 (368)
T 3reo_A 321 ALMLAYNPGGKERTEKEFQALAMASG----FRGFKVASCA-FNTYVMEFLK 366 (368)
T ss_dssp HHHHHHSSBCCCCCHHHHHHHHHHTT----CCEEEEEEEE-TTEEEEEEEC
T ss_pred HHHHhhcCCCccCCHHHHHHHHHHCC----CeeeEEEEeC-CCcEEEEEEe
Confidence 012455677888876 6777776533 3334444443
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-10 Score=99.78 Aligned_cols=91 Identities=26% Similarity=0.410 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++ . ..+++++++|+
T Consensus 17 ~~i~~~iv~~~~~~~--~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~--- 85 (249)
T 3ftd_A 17 EGVLKKIAEELNIEE--GNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----G-DERLEVINEDA--- 85 (249)
T ss_dssp HHHHHHHHHHTTCCT--TCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCT---
T ss_pred HHHHHHHHHhcCCCC--cCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcch---
Confidence 456677777776543 379999999999999999987 558999999999999999877 2 34699999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVP 228 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~ 228 (322)
.+...... .+.+ .|++||||.-
T Consensus 86 --~~~~~~~~-~~~~-~vv~NlPy~i 107 (249)
T 3ftd_A 86 --SKFPFCSL-GKEL-KVVGNLPYNV 107 (249)
T ss_dssp --TTCCGGGS-CSSE-EEEEECCTTT
T ss_pred --hhCChhHc-cCCc-EEEEECchhc
Confidence 33211111 1234 8999999964
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-11 Score=106.33 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=74.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF-HAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~-~~D~~~~~~~ 205 (322)
..+++.+... .++.+|||+|||||.++..++.. +..+|+|+|+|+.+++++.++ ..++... ..|+
T Consensus 74 ~~~l~~~~~~-~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni------ 139 (291)
T 3hp7_A 74 EKALAVFNLS-VEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNF------ 139 (291)
T ss_dssp HHHHHHTTCC-CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCG------
T ss_pred HHHHHhcCCC-ccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh------CcccceecccCc------
Confidence 3444444322 12369999999999999988887 567999999999999886432 1234332 2343
Q ss_pred cccC-cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 206 KNLQ-PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 206 ~~l~-~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
..+. ..++...||+|++|-.|++. ..++..+.++|+|||.+++-
T Consensus 140 ~~l~~~~l~~~~fD~v~~d~sf~sl-----------------------------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 140 RYAEPVDFTEGLPSFASIDVSFISL-----------------------------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GGCCGGGCTTCCCSEEEECCSSSCG-----------------------------GGTHHHHHHHSCTTCEEEEE
T ss_pred eecchhhCCCCCCCEEEEEeeHhhH-----------------------------HHHHHHHHHHcCcCCEEEEE
Confidence 1111 11234459999998766531 26788899999999999885
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-10 Score=104.77 Aligned_cols=96 Identities=14% Similarity=0.248 Sum_probs=75.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.|++ . .+++++.+|+ ++.+ +. ||+
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~-----~~~~----~~--~D~ 270 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDM-----FASV----PQ--GDA 270 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCT-----TTCC----CC--EEE
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCc-----ccCC----CC--CCE
Confidence 37999999999999999999999999999999 888887764 1 3599999999 5432 22 999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+++-..+... .. ....+++++.+.|+|||.+++.
T Consensus 271 v~~~~~lh~~~------d~------------------~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 271 MILKAVCHNWS------DE------------------KCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp EEEESSGGGSC------HH------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecccccCC------HH------------------HHHHHHHHHHHhcCCCCEEEEE
Confidence 99965433211 11 1348999999999999998774
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=103.37 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=64.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH-------N-VANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~-------~-l~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||+|||+|..++.+|+. +.+|+++|+++.+...+++|++.. + +.++++++++|. .+.++. +
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~-----~~~L~~-~ 161 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-----LTALTD-I 161 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH-----HHHSTT-C
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH-----HHHHHh-C
Confidence 68999999999999999998 568999999999888888876543 2 324699999998 554432 1
Q ss_pred CCCCeeEEEEcCCCCCC
Q psy7093 213 LEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~ 229 (322)
..+||+|++||||...
T Consensus 162 -~~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 162 -TPRPQVVYLDPMFPHK 177 (258)
T ss_dssp -SSCCSEEEECCCCCCC
T ss_pred -cccCCEEEEcCCCCCc
Confidence 2369999999999654
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=102.43 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
.+++.+++.+.... +.+|||+|||+|.++..++...+. .+|+|+|+|+.+++.++++. ..+++++++|+
T Consensus 29 ~i~~~iv~~~~~~~--~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~-- 99 (279)
T 3uzu_A 29 GVIDAIVAAIRPER--GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDA-- 99 (279)
T ss_dssp HHHHHHHHHHCCCT--TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCG--
T ss_pred HHHHHHHHhcCCCC--cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECCh--
Confidence 45566777765443 379999999999999999988432 34999999999999999983 34699999998
Q ss_pred cccccc-cCcCcCCC--CeeEEEEcCCCCCC
Q psy7093 202 KGQVKN-LQPDLLEQ--KFDLVVSNPPYVPS 229 (322)
Q Consensus 202 ~~~~~~-l~~~~~~~--~fDlIv~NPPy~~~ 229 (322)
++. ++...... ..+.||+|+||.-+
T Consensus 100 ---~~~~~~~~~~~~~~~~~~vv~NlPY~is 127 (279)
T 3uzu_A 100 ---LTFDFGSIARPGDEPSLRIIGNLPYNIS 127 (279)
T ss_dssp ---GGCCGGGGSCSSSSCCEEEEEECCHHHH
T ss_pred ---hcCChhHhcccccCCceEEEEccCcccc
Confidence 332 11111111 34689999999643
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=98.85 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=72.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-ccCCCccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH-AEIDSKGQ 204 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~-~D~~~~~~ 204 (322)
++.+++.+.... .+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++..+ +.... .++
T Consensus 25 L~~~L~~~~~~~-~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~----- 91 (232)
T 3opn_A 25 LEKALKEFHLEI-NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNF----- 91 (232)
T ss_dssp HHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCG-----
T ss_pred HHHHHHHcCCCC-CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCcc------ccccccceE-----
Confidence 344555554321 2369999999999999999988 446999999999999998765432 22211 121
Q ss_pred ccccC-cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 205 VKNLQ-PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 205 ~~~l~-~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
..+. ..+....||.+.++..|... ..++..+.++|||||.+++.+
T Consensus 92 -~~~~~~~~~~~~~d~~~~D~v~~~l-----------------------------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 92 -RNAVLADFEQGRPSFTSIDVSFISL-----------------------------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp -GGCCGGGCCSCCCSEEEECCSSSCG-----------------------------GGTHHHHHHHSCTTCEEEEEE
T ss_pred -EEeCHhHcCcCCCCEEEEEEEhhhH-----------------------------HHHHHHHHHhccCCCEEEEEE
Confidence 1111 11122235666676655431 268889999999999998854
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-10 Score=103.90 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=95.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ .. +++++.+|+ ++.+ + .||+
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~-----~~~~----p--~~D~ 249 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SN-NLTYVGGDM-----FTSI----P--NADA 249 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BT-TEEEEECCT-----TTCC----C--CCSE
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CC-CcEEEeccc-----cCCC----C--CccE
Confidence 37999999999999999999999999999999 999887764 12 499999999 5432 2 3999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc---CcEEEEE-E--cC------------
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP---NGSIFLE-T--NH------------ 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~---gG~l~~e-~--~~------------ 281 (322)
|+++-..+... .. -...+++++.+.|+| ||.+++. . ..
T Consensus 250 v~~~~~lh~~~------d~------------------~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~ 305 (352)
T 1fp2_A 250 VLLKYILHNWT------DK------------------DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKL 305 (352)
T ss_dssp EEEESCGGGSC------HH------------------HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHH
T ss_pred EEeehhhccCC------HH------------------HHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHh
Confidence 99965443221 11 134899999999999 9987763 2 11
Q ss_pred -------------CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEE
Q psy7093 282 -------------DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319 (322)
Q Consensus 282 -------------~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~ 319 (322)
...+.+.+++++.| |..++++. ..|...++.+.
T Consensus 306 ~~d~~~~~~~g~~~t~~e~~~ll~~aG----f~~~~~~~-~~~~~~vie~~ 351 (352)
T 1fp2_A 306 LMDVNMACLNGKERNEEEWKKLFIEAG----FQHYKISP-LTGFLSLIEIY 351 (352)
T ss_dssp HHHHHGGGGTCCCEEHHHHHHHHHHTT----CCEEEEEE-EETTEEEEEEE
T ss_pred hccHHHHhccCCCCCHHHHHHHHHHCC----CCeeEEEe-cCCCcEEEEEe
Confidence 11345667777776 67777765 45666666654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-09 Score=101.15 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=73.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+. ..+++++.+|+ ++++ +.+ |+
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~-----~~~~----p~~--D~ 262 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDM-----FKEV----PSG--DT 262 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCT-----TTCC----CCC--SE
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-------cCCeEEEeCCc-----CCCC----CCC--CE
Confidence 37999999999999999999999999999999 888776653 14699999999 5533 333 99
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|++.--.+ .++.+ -..++++++.+.|+|||.+++
T Consensus 263 v~~~~vlh------~~~d~------------------~~~~~L~~~~~~L~pgG~l~i 296 (364)
T 3p9c_A 263 ILMKWILH------DWSDQ------------------HCATLLKNCYDALPAHGKVVL 296 (364)
T ss_dssp EEEESCGG------GSCHH------------------HHHHHHHHHHHHSCTTCEEEE
T ss_pred EEehHHhc------cCCHH------------------HHHHHHHHHHHHcCCCCEEEE
Confidence 98853322 12211 145899999999999998876
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=101.88 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=95.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ .. +++++.+|+ ++.+ + .||+|
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~-----~~~~----~--~~D~v 255 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NE-NLNFVGGDM-----FKSI----P--SADAV 255 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CS-SEEEEECCT-----TTCC----C--CCSEE
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CC-CcEEEeCcc-----CCCC----C--CceEE
Confidence 7999999999999999999999999999999 688876653 23 499999999 5422 2 49999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc---CcEEEE-EEc--C--C----------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP---NGSIFL-ETN--H--D---------- 282 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~---gG~l~~-e~~--~--~---------- 282 (322)
+++-.++... .+ ....+++++.+.|+| ||.+++ +.. . .
T Consensus 256 ~~~~vlh~~~------d~------------------~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~ 311 (358)
T 1zg3_A 256 LLKWVLHDWN------DE------------------QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLD 311 (358)
T ss_dssp EEESCGGGSC------HH------------------HHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHH
T ss_pred EEcccccCCC------HH------------------HHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHh
Confidence 9975544322 11 134899999999999 998776 321 1 0
Q ss_pred --------------CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEE
Q psy7093 283 --------------HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319 (322)
Q Consensus 283 --------------~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~ 319 (322)
..+.+.+++++.| |..++++. ..+...++.+.
T Consensus 312 ~d~~~~~~~~g~~~t~~e~~~ll~~aG----f~~~~~~~-~~~~~~vie~~ 357 (358)
T 1zg3_A 312 YDLVMLTMFLGKERTKQEWEKLIYDAG----FSSYKITP-ISGFKSLIEVY 357 (358)
T ss_dssp HHHHHHHHHSCCCEEHHHHHHHHHHTT----CCEEEEEE-ETTTEEEEEEE
T ss_pred hCHHHhccCCCCCCCHHHHHHHHHHcC----CCeeEEEe-cCCCcEEEEEe
Confidence 2345566777775 77777776 45666666654
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-09 Score=99.62 Aligned_cols=142 Identities=16% Similarity=0.074 Sum_probs=98.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEccCCCcccccccCcCcCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-----NQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-----~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
+.+|||+|+|.|.-+.++|...++..|+++|+++..++..++|+++++.. +++.+...|. .. +.. ...
T Consensus 149 g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~-----~~-~~~-~~~ 221 (359)
T 4fzv_A 149 GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG-----RK-WGE-LEG 221 (359)
T ss_dssp TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG-----GG-HHH-HST
T ss_pred CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch-----hh-cch-hcc
Confidence 47999999999999999999877778999999999999999999988653 3588888887 22 111 235
Q ss_pred CCeeEEEEcCCCCCC--CCCCCCChhh-hcccccccccCCCChh-HHHHHHHHHHhccCccCcEEEEEEcC----CCHHH
Q psy7093 215 QKFDLVVSNPPYVPS--LDIPKLEPEI-ALYEDIKALDGGHDGL-NIIKPICVFGSNYLKPNGSIFLETNH----DHLDK 286 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~--~~~~~l~~~v-~~~ep~~al~~g~~gl-~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~ 286 (322)
+.||.|++++|.... .... -.+++ ....+... ..+ .+-++++..+.++|||||.|++.++. .....
T Consensus 222 ~~fD~VLlDaPCSg~g~g~~r-~~~~~~~~~~~~~~-----~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~v 295 (359)
T 4fzv_A 222 DTYDRVLVDVPCTTDRHSLHE-EENNIFKRSRKKER-----QILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYV 295 (359)
T ss_dssp TCEEEEEEECCCCCHHHHTTC-CTTCTTSGGGHHHH-----HTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHH
T ss_pred ccCCEEEECCccCCCCCcccc-cChhhhhhCCHHHH-----HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHH
Confidence 689999999997542 1100 00110 00000000 011 23468999999999999999998875 33566
Q ss_pred HHHHHHHc
Q psy7093 287 IKEWLGIC 294 (322)
Q Consensus 287 ~~~~l~~~ 294 (322)
|..+++.+
T Consensus 296 V~~~L~~~ 303 (359)
T 4fzv_A 296 VQGAIELL 303 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77677654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=95.75 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||+|.+++.++ +...++|+|+|+.+++.++.++..++. +..+..+|. .... +.++||
T Consensus 105 ~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~-----~~~~----~~~~~D 170 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDV-----LCAP----PAEAGD 170 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCT-----TTSC----CCCBCS
T ss_pred CCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeec-----ccCC----CCCCcc
Confidence 35899999999999999887 789999999999999999999988884 388999998 3332 356899
Q ss_pred EEEEc
Q psy7093 219 LVVSN 223 (322)
Q Consensus 219 lIv~N 223 (322)
+|+++
T Consensus 171 vvLll 175 (253)
T 3frh_A 171 LALIF 175 (253)
T ss_dssp EEEEE
T ss_pred hHHHH
Confidence 99996
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-10 Score=106.32 Aligned_cols=113 Identities=15% Similarity=0.249 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCc------hhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSG------TGAITISLLKH-FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~G------sG~~~~~la~~-~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.+.+.++..+.. ++.+|||+||| +|..++.+++. +|+.+|+|+|+|+.+. .. ..++++++
T Consensus 204 ~~Ye~lL~~l~~---~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~-~~rI~fv~ 270 (419)
T 3sso_A 204 PHYDRHFRDYRN---QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VD-ELRIRTIQ 270 (419)
T ss_dssp HHHHHHHGGGTT---SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GC-BTTEEEEE
T ss_pred HHHHHHHHhhcC---CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hc-CCCcEEEE
Confidence 344455544443 24799999999 77777777765 5889999999999862 11 34699999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+.+......+. ...++||+|++|--. . . .-+...++++.++|||||+++
T Consensus 271 GDa~dlpf~~~l~--~~d~sFDlVisdgsH-------~-~-------------------~d~~~aL~el~rvLKPGGvlV 321 (419)
T 3sso_A 271 GDQNDAEFLDRIA--RRYGPFDIVIDDGSH-------I-N-------------------AHVRTSFAALFPHVRPGGLYV 321 (419)
T ss_dssp CCTTCHHHHHHHH--HHHCCEEEEEECSCC-------C-H-------------------HHHHHHHHHHGGGEEEEEEEE
T ss_pred ecccccchhhhhh--cccCCccEEEECCcc-------c-c-------------------hhHHHHHHHHHHhcCCCeEEE
Confidence 9982210000000 014689999996210 0 0 114578999999999999999
Q ss_pred EE
Q psy7093 277 LE 278 (322)
Q Consensus 277 ~e 278 (322)
++
T Consensus 322 i~ 323 (419)
T 3sso_A 322 IE 323 (419)
T ss_dssp EE
T ss_pred EE
Confidence 95
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=101.11 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +.+|||+|||+|.++. ++. .+..+|+++|+|+.+++.++++.... ++++++++|+
T Consensus 7 ~~i~~~iv~~~~~~~--~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~--- 76 (252)
T 1qyr_A 7 QFVIDSIVSAINPQK--GQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDA--- 76 (252)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCG---
T ss_pred HHHHHHHHHhcCCCC--cCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECch---
Confidence 345667777765442 3789999999999999 654 23233999999999999999876532 3699999998
Q ss_pred ccccc-cCcCcC-CCCeeEEEEcCCCCCC
Q psy7093 203 GQVKN-LQPDLL-EQKFDLVVSNPPYVPS 229 (322)
Q Consensus 203 ~~~~~-l~~~~~-~~~fDlIv~NPPy~~~ 229 (322)
.+. ++.... .+..|.||+|+||..+
T Consensus 77 --~~~~~~~~~~~~~~~~~vvsNlPY~i~ 103 (252)
T 1qyr_A 77 --MTFNFGELAEKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp --GGCCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred --hhCCHHHhhcccCCceEEEECCCCCcc
Confidence 332 111000 1245899999999753
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.6e-10 Score=110.50 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=63.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||+|.++..+|+. ++.|+|+|.++.+++.|+..+...+.. ++++.++++ +.+......++||
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~------~~~~~~~~~~~fD 136 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRI------EEVIAALEEGEFD 136 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCH------HHHHHHCCTTSCS
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCH------HHHhhhccCCCcc
Confidence 3479999999999999999998 899999999999999999999877643 399999998 3322122457899
Q ss_pred EEEEc
Q psy7093 219 LVVSN 223 (322)
Q Consensus 219 lIv~N 223 (322)
+|+|.
T Consensus 137 ~v~~~ 141 (569)
T 4azs_A 137 LAIGL 141 (569)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99994
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-10 Score=102.70 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=68.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEE--EccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVF--HAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~--~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .....++.++ ++|+ . .+ +.++
T Consensus 75 g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~-----~-~l----~~~~ 140 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDI-----H-TL----PVER 140 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCT-----T-TS----CCCC
T ss_pred CCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCH-----h-HC----CCCC
Confidence 379999999999999998887 6899999998 43222211000 0011158888 8898 2 22 3568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH--HHHHHHhccCccCc--EEEEEEc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK--PICVFGSNYLKPNG--SIFLETN 280 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~--~~l~~~~~~Lk~gG--~l~~e~~ 280 (322)
||+|+||...+ ... .. .+..+ .+++.+.++|+||| .+++.+-
T Consensus 141 fD~V~sd~~~~-~~~-----~~----------------~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 141 TDVIMCDVGES-SPK-----WS----------------VESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CSEEEECCCCC-CSC-----HH----------------HHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CcEEEEeCccc-CCc-----cc----------------hhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 99999986622 111 00 11111 37788899999999 8888553
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-08 Score=89.93 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=103.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--C-C-CCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--N-V-ANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~-l-~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
+++||=+|.|.|..+..+++..+..+|+.||+++..+++|++.+... + + ..|++++.+|. ...+.. ..+
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg-----~~~l~~--~~~ 156 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDG-----VNFVNQ--TSQ 156 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCT-----TTTTSC--SSC
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechH-----HHHHhh--ccc
Confidence 48999999999999999999877789999999999999999876432 1 1 46899999999 666643 456
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHH
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGI 293 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~ 293 (322)
+||+||.+.+-... |...|+ -+.+++.+.+.|+|||+++...+. -+.+.+..+++.
T Consensus 157 ~yDvIi~D~~dp~~--------------~~~~L~--------t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~ 214 (294)
T 3o4f_A 157 TFDVIISDCTDPIG--------------PGESLF--------TSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRK 214 (294)
T ss_dssp CEEEEEESCCCCCC--------------TTCCSS--------CCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHH
T ss_pred cCCEEEEeCCCcCC--------------Cchhhc--------CHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHH
Confidence 89999998642111 001111 237888899999999999986553 344444444433
Q ss_pred cCCCCceeeEEEecC----C-CCCCeEEEEEE
Q psy7093 294 CGHHMKLKLVENYKD----F-NNKDRFVELKL 320 (322)
Q Consensus 294 ~~~~~~~~~v~~~~D----~-~g~~R~~~~~~ 320 (322)
... -|..+..+.- + .|..-|+.+.+
T Consensus 215 l~~--~F~~v~~~~~~vPty~~g~w~f~~as~ 244 (294)
T 3o4f_A 215 LSH--YFSDVGFYQAAIPTYYGGIMTFAWATD 244 (294)
T ss_dssp HHH--HCSEEEEEEECCTTSSSSCEEEEEEES
T ss_pred HHh--hCCceeeeeeeeccCCCcceeheeEEC
Confidence 210 1445544322 1 36667777665
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-10 Score=102.44 Aligned_cols=105 Identities=10% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEE--EccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVF--HAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~--~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++. .+|+|+|+++ ++..++++... .....++.++ ++|+ . .+ +.++
T Consensus 83 g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~-----~-~l----~~~~ 148 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV-----T-KM----EPFQ 148 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG-----G-GC----CCCC
T ss_pred CCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcH-----h-hC----CCCC
Confidence 369999999999999999887 5899999998 43333221100 0111158888 8898 2 23 3568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH--HHHHHHhccCccCc--EEEEEEc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK--PICVFGSNYLKPNG--SIFLETN 280 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~--~~l~~~~~~Lk~gG--~l~~e~~ 280 (322)
||+|+||...+. .. .. .+..+ .+++.+.++|+||| .+++.+-
T Consensus 149 fD~Vvsd~~~~~-~~-----~~----------------~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 149 ADTVLCDIGESN-PT-----AA----------------VEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CSEEEECCCCCC-SC-----HH----------------HHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred cCEEEECCCcCC-Cc-----hh----------------hhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 999999866221 11 00 11111 36788899999999 8887543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=91.20 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcc-CCCCCCeEEEEcCch---hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 124 ELIDIITDKLES-SNHTPTRMIEIGSGT---GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 124 ~lv~~i~~~~~~-~~~~~~~iLDlg~Gs---G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
.++..++..+.. ... .+|||+|||+ |.+...+....|+++|+++|.|+.++..|+.++.... ..+++++++|+
T Consensus 64 ~fl~rav~~l~~~~g~--~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~ 140 (277)
T 3giw_A 64 DWMNRAVAHLAKEAGI--RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHTSCC--CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCT
T ss_pred HHHHHHHHHhccccCC--CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecc
Confidence 445555555553 222 6899999996 4444444445789999999999999999998875432 24699999999
Q ss_pred CCcccccccCcCcCCCCee-----EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 200 DSKGQVKNLQPDLLEQKFD-----LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fD-----lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
.+.... +......+.|| .|++|--.+...+ +. -...++..+.+.|+|||+
T Consensus 141 ~~~~~~--l~~~~~~~~~D~~~p~av~~~avLH~l~d------~~-----------------~p~~~l~~l~~~L~PGG~ 195 (277)
T 3giw_A 141 LDPASI--LDAPELRDTLDLTRPVALTVIAIVHFVLD------ED-----------------DAVGIVRRLLEPLPSGSY 195 (277)
T ss_dssp TCHHHH--HTCHHHHTTCCTTSCCEEEEESCGGGSCG------GG-----------------CHHHHHHHHHTTSCTTCE
T ss_pred cChhhh--hcccccccccCcCCcchHHhhhhHhcCCc------hh-----------------hHHHHHHHHHHhCCCCcE
Confidence 332100 00000012233 5777754433221 10 024788999999999999
Q ss_pred EEEEEc
Q psy7093 275 IFLETN 280 (322)
Q Consensus 275 l~~e~~ 280 (322)
|++.+.
T Consensus 196 Lvls~~ 201 (277)
T 3giw_A 196 LAMSIG 201 (277)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 998754
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-08 Score=84.97 Aligned_cols=118 Identities=11% Similarity=0.220 Sum_probs=82.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccCCCcc---------cccccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV--ANQLQVFHAEIDSKG---------QVKNLQ 209 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~~~~---------~~~~l~ 209 (322)
.+|||+|| |+-++.+|+. ++.+|+++|.+++..+.|++|++..++ .++++++.+|+.+.. ..+.++
T Consensus 32 ~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 32 EVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp SEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 78999998 4677777774 478999999999999999999999998 788999999972110 000011
Q ss_pred c------Cc-CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE--Ec
Q psy7093 210 P------DL-LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE--TN 280 (322)
Q Consensus 210 ~------~~-~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e--~~ 280 (322)
. .. ..++||+|+.+-.+ ....+..+.++|+|||++++. +.
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~k-------------------------------~~~~~~~~l~~l~~GG~Iv~DNv~~ 157 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGRF-------------------------------RVGCALATAFSITRPVTLLFDDYSQ 157 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSSS-------------------------------HHHHHHHHHHHCSSCEEEEETTGGG
T ss_pred HHhhhhhccccCCCCCEEEEeCCC-------------------------------chhHHHHHHHhcCCCeEEEEeCCcC
Confidence 1 01 13689999996321 113455577899999999763 12
Q ss_pred CCCHHHHHHHHH
Q psy7093 281 HDHLDKIKEWLG 292 (322)
Q Consensus 281 ~~~~~~~~~~l~ 292 (322)
..+-..+.+++.
T Consensus 158 r~~y~~v~~~~~ 169 (202)
T 3cvo_A 158 RRWQHQVEEFLG 169 (202)
T ss_dssp CSSGGGGHHHHC
T ss_pred CcchHHHHHHHh
Confidence 333455666664
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=99.51 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=69.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEEEc-cCCCcccccccCcCcCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ----SKHACDLTEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDi----s~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~ 214 (322)
+.+|||+|||+|.++..+++. .+|+|+|+ ++..++.+. .+..+ .+++.++++ |+ .. + +.
T Consensus 83 g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~-----~~-l----~~ 146 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDV-----FF-I----PP 146 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCT-----TT-S----CC
T ss_pred CCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEecccc-----cc-C----Cc
Confidence 379999999999999999887 47999999 554332111 11111 145899998 87 32 2 24
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH--HHHHHHhccCccCcEEEEEEcCC
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK--PICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~--~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
.+||+|+||.+.. ... .. .+..+ .++..+.++|||||.+++.+-..
T Consensus 147 ~~fD~V~sd~~~~-~g~-----~~----------------~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 147 ERCDTLLCDIGES-SPN-----PT----------------VEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCSEEEECCCCC-CSS-----HH----------------HHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCCCEEEECCccc-cCc-----ch----------------hhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 5899999986653 111 00 01111 46788889999999999866443
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-09 Score=85.49 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=75.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~~~fD 218 (322)
+.+|||+|||+ +++|+|+.+++.|+++... +++++++|+ . .++. .+..++||
T Consensus 13 g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~-----~-~~~~~~~~~~~fD 65 (176)
T 2ld4_A 13 GQFVAVVWDKS----------------SPVEALKGLVDKLQALTGN-----EGRVSVENI-----K-QLLQSAHKESSFD 65 (176)
T ss_dssp TSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEG-----G-GGGGGCCCSSCEE
T ss_pred CCEEEEecCCc----------------eeeeCCHHHHHHHHHhccc-----CcEEEEech-----h-cCccccCCCCCEe
Confidence 47999999996 2499999999999987532 388999998 2 2221 11467899
Q ss_pred EEEEcCCCCCC-CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----------CCHHHH
Q psy7093 219 LVVSNPPYVPS-LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----------DHLDKI 287 (322)
Q Consensus 219 lIv~NPPy~~~-~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----------~~~~~~ 287 (322)
+|+++-..+.. .+ ...+++++.++|||||++++.... ...+.+
T Consensus 66 ~V~~~~~l~~~~~~--------------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 119 (176)
T 2ld4_A 66 IILSGLVPGSTTLH--------------------------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKL 119 (176)
T ss_dssp EEEECCSTTCCCCC--------------------------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHH
T ss_pred EEEECChhhhcccC--------------------------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHH
Confidence 99997544332 11 137899999999999999996531 126778
Q ss_pred HHHHHHcC
Q psy7093 288 KEWLGICG 295 (322)
Q Consensus 288 ~~~l~~~~ 295 (322)
.+++++.|
T Consensus 120 ~~~l~~aG 127 (176)
T 2ld4_A 120 CSALTLSG 127 (176)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88899887
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.4e-08 Score=97.10 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=71.8
Q ss_pred CeEEEEcCchhHH---HHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTGAI---TISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~---~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
..|+|+|||+|-+ ++.++++.. ..+|+|||.|+. ...|++..+.+++.++|+++++|+ +.+. ...+
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~------eev~---LPEK 428 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDM------REWV---APEK 428 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCT------TTCC---CSSC
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcc------eecc---CCcc
Confidence 5799999999988 444444421 137899999985 557888899999999999999999 3332 2468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+|||-.- .....+| ++ . ..+....++|||||.++
T Consensus 429 VDIIVSEwM-----------G~fLl~E----------~m--l-evL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 429 ADIIVSELL-----------GSFADNE----------LS--P-ECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EEEEECCCC-----------BTTBGGG----------CH--H-HHHHHHGGGEEEEEEEE
T ss_pred cCEEEEEcC-----------ccccccc----------CC--H-HHHHHHHHhcCCCcEEc
Confidence 999999321 0111122 22 2 46677789999999863
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-08 Score=86.19 Aligned_cols=144 Identities=18% Similarity=0.277 Sum_probs=95.5
Q ss_pred CCeEEEEcCchhHHHHHHHHh-------CCC-----CEEEEEeCCH---HHHH-----------HHHHHHHHc-------
Q psy7093 140 PTRMIEIGSGTGAITISLLKH-------FPK-----LKAIAIDQSK---HACD-----------LTEQNAVMH------- 186 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~-------~~~-----~~v~~vDis~---~al~-----------~A~~n~~~~------- 186 (322)
+.+|||+|+|+|..++.++.. .|. .+++++|..+ +.+. .|+.++..+
T Consensus 61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~ 140 (257)
T 2qy6_A 61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 140 (257)
T ss_dssp EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence 368999999999988887664 453 5899999876 4333 667666542
Q ss_pred ---CCC---CcEEEEEccCCCcccccccCcCcCC---CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHH
Q psy7093 187 ---NVA---NQLQVFHAEIDSKGQVKNLQPDLLE---QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257 (322)
Q Consensus 187 ---~l~---~~i~~~~~D~~~~~~~~~l~~~~~~---~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~ 257 (322)
.+. .+++++.+|+ .+.++. ... ..||+|+.++ |.+... ++. |
T Consensus 141 ~r~~~~~~~~~l~l~~GDa-----~~~l~~-~~~~~~~~~D~iflD~-fsp~~~-----p~l--w--------------- 191 (257)
T 2qy6_A 141 HRLLLDEGRVTLDLWFGDI-----NELISQ-LDDSLNQKVDAWFLDG-FAPAKN-----PDM--W--------------- 191 (257)
T ss_dssp EEEEEC--CEEEEEEESCH-----HHHGGG-SCGGGTTCEEEEEECS-SCTTTC-----GGG--C---------------
T ss_pred hheeccCCceEEEEEECcH-----HHHHhh-cccccCCeEEEEEECC-CCcccC-----hhh--c---------------
Confidence 111 3577899998 444432 111 3799999986 332221 111 1
Q ss_pred HHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 258 IKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 258 ~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+..++..+.++|+|||+++. +.....+++.+...| |. +...+-.-++..++.+.+
T Consensus 192 ~~~~l~~l~~~L~pGG~l~t---ysaa~~vrr~L~~aG----F~-v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 192 TQNLFNAMARLARPGGTLAT---FTSAGFVRRGLQEAG----FT-MQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp CHHHHHHHHHHEEEEEEEEE---SCCBHHHHHHHHHHT----EE-EEEECCSTTCCCEEEEEE
T ss_pred CHHHHHHHHHHcCCCcEEEE---EeCCHHHHHHHHHCC----CE-EEeCCCCCCCCceEEEEe
Confidence 23788899999999999874 444457888888876 65 444455556666777665
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.69 E-value=7.6e-09 Score=92.41 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=82.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~fDl 219 (322)
..+||+.+|||.+++.+.+. +.+++.+|.++.+++..++|++. .+++++++.|. +..+.... +..+||+
T Consensus 93 ~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~-----~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 93 NSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDG-----VSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCH-----HHHHHHHCSCTTSCEE
T ss_pred CCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcH-----HHHHHHhcCCCCCccE
Confidence 56899999999999999984 68999999999999999999865 35799999997 55443211 2347999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc--cCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN--YLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~--~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
|+.+|||-...+ |.++++.+.+ .+.++|++++=.+--+...+..+.
T Consensus 163 VfiDPPYe~k~~--------------------------~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~ 210 (283)
T 2oo3_A 163 IFIDPSYERKEE--------------------------YKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFL 210 (283)
T ss_dssp EEECCCCCSTTH--------------------------HHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHH
T ss_pred EEECCCCCCCcH--------------------------HHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHH
Confidence 999999974322 3445444433 456899876644433433344433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=94.24 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=69.4
Q ss_pred CeEEEEcCchhHHHHHH---HHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 141 TRMIEIGSGTGAITISL---LKHF----------PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~l---a~~~----------~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
..|||+|||+|.++... ++.. ...+|+|||.|+.+...++.... +++.++|+++++|+ +.
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~------ee 483 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDM------RS 483 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCG------GG
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCch------hh
Confidence 58999999999996432 2211 23599999999988866655443 78888999999998 22
Q ss_pred cCcCcC-----CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 208 LQPDLL-----EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 208 l~~~~~-----~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+. ++ .+++|+|||-.. .....+| .....+..+.++|||||+++
T Consensus 484 v~--lp~~~~~~ekVDIIVSElm-----------Gsfl~nE-------------L~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 LP--GIAKDRGFEQPDIIVSELL-----------GSFGDNE-------------LSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HH--HHHHHTTCCCCSEEEECCC-----------BTTBGGG-------------SHHHHHHTTGGGSCTTCEEE
T ss_pred cc--cccccCCCCcccEEEEecc-----------ccccchh-------------ccHHHHHHHHHhCCCCcEEE
Confidence 21 11 468999999432 0000111 12356666789999999764
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=79.96 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=99.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CC----CCcEEEEEccCCCcccccccCcC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH---NV----ANQLQVFHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~---~l----~~~i~~~~~D~~~~~~~~~l~~~ 211 (322)
++++||=+|.|.|..+..+++. +..+|+.||+++..+++|++..... .+ .++++++.+|. ...+...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da-----~~fl~~~ 278 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDC-----IPVLKRY 278 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCH-----HHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHH-----HHHHHhh
Confidence 4589999999999999999886 5689999999999999999864321 11 13689999998 5544211
Q ss_pred -cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHH
Q psy7093 212 -LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKE 289 (322)
Q Consensus 212 -~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~ 289 (322)
-..++||+||.+.+-.+..... ..| .-..+.+.+++.+.+.|+|||+++...+. ...+.+..
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p--------~g~--------a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~ 342 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSP--------EED--------STWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSL 342 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC--------------------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHH
T ss_pred hhccCceeEEEECCCCCcccCcc--------cCc--------chHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHH
Confidence 1245899999985422211100 000 11234678999999999999999886542 23333333
Q ss_pred HHHHcCCCCceeeEEEe------cCCCCCCeEEEEEE
Q psy7093 290 WLGICGHHMKLKLVENY------KDFNNKDRFVELKL 320 (322)
Q Consensus 290 ~l~~~~~~~~~~~v~~~------~D~~g~~R~~~~~~ 320 (322)
+.+.... -|..+.+. .-+.|..-|+.+.|
T Consensus 343 i~~tl~~--vF~~v~~~~~~~~VPSy~~~W~F~~aSK 377 (381)
T 3c6k_A 343 YEEQLGR--LYCPVEFSKEIVCVPSYLELWVFYTVWK 377 (381)
T ss_dssp HHHHHTT--SSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred HHHHHHH--hCCcceEeeEEEEecCCCCceeeeEEEC
Confidence 3332221 13333322 22335667777766
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.9e-07 Score=81.27 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=96.0
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCH--------------------------HH
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSK--------------------------HA 175 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~--------------------------~a 175 (322)
..+++.+.... .++.|||+||..|..++.++..+ ++.+|+++|..+ ..
T Consensus 95 ~~l~~~v~~~~-~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~ 173 (282)
T 2wk1_A 95 RQCVEDVIGNN-VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVS 173 (282)
T ss_dssp HHHHHHHHHTT-CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCC
T ss_pred HHHHHHHHhcC-CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhH
Confidence 34444443221 34799999999999999888764 478899999631 14
Q ss_pred HHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCCh
Q psy7093 176 CDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG 254 (322)
Q Consensus 176 l~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~g 254 (322)
++.+++|+++.++. ++++++.+|+ .+.++. .+.++||+|..+- + .|+
T Consensus 174 ~~~ar~n~~~~gl~~~~I~li~Gda-----~etL~~-~~~~~~d~vfIDa------D---------~y~----------- 221 (282)
T 2wk1_A 174 EEEVRRNFRNYDLLDEQVRFLPGWF-----KDTLPT-APIDTLAVLRMDG------D---------LYE----------- 221 (282)
T ss_dssp HHHHHHHHHHTTCCSTTEEEEESCH-----HHHSTT-CCCCCEEEEEECC------C---------SHH-----------
T ss_pred HHHHHHHHHHcCCCcCceEEEEeCH-----HHHHhh-CCCCCEEEEEEcC------C---------ccc-----------
Confidence 67899999999984 7899999998 666653 3456899999852 0 011
Q ss_pred hHHHHHHHHHHhccCccCcEEEEE-Ec--CCCHHHHHHHHHHcCC
Q psy7093 255 LNIIKPICVFGSNYLKPNGSIFLE-TN--HDHLDKIKEWLGICGH 296 (322)
Q Consensus 255 l~~~~~~l~~~~~~Lk~gG~l~~e-~~--~~~~~~~~~~l~~~~~ 296 (322)
-+...++.+...|+|||++++. +. ....+.+.++.+..+.
T Consensus 222 --~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~i 264 (282)
T 2wk1_A 222 --STWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFDI 264 (282)
T ss_dssp --HHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTTC
T ss_pred --cHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcCC
Confidence 2567889999999999999883 22 1224567777777763
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=76.36 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchh-HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTG-AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG-~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+.+++.+.+.... +.+|||+|||+| ..+..|+.. .+..|+++|+++.++. +++.|+
T Consensus 23 e~LaeYI~~~~~~----~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~----------------~v~dDi-- 79 (153)
T 2k4m_A 23 NDLAVYIIRCSGP----GTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG----------------IVRDDI-- 79 (153)
T ss_dssp HHHHHHHHHHSCS----SSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT----------------EECCCS--
T ss_pred HHHHHHHHhcCCC----CCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc----------------eEEccC--
Confidence 3455555554432 379999999999 699999984 2788999999998765 788999
Q ss_pred cccccccCcCcCCCCeeEE-EEcCC
Q psy7093 202 KGQVKNLQPDLLEQKFDLV-VSNPP 225 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlI-v~NPP 225 (322)
|++... .-..||+| -.|||
T Consensus 80 ---F~P~~~--~Y~~~DLIYsirPP 99 (153)
T 2k4m_A 80 ---TSPRME--IYRGAALIYSIRPP 99 (153)
T ss_dssp ---SSCCHH--HHTTEEEEEEESCC
T ss_pred ---CCCccc--ccCCcCEEEEcCCC
Confidence 654321 11489999 56998
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.49 E-value=8.3e-08 Score=87.13 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=66.2
Q ss_pred cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 191 QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 191 ~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
+++++++|+ ++.+.. ++.++||+||+||||....++....... .++...++.++.++.++.++.++|+
T Consensus 21 ~~~i~~gD~-----~~~l~~-l~~~s~DlIvtdPPY~~~~~y~~~~~~~------~~~~~~~~~l~~l~~~~~~~~rvLk 88 (297)
T 2zig_A 21 VHRLHVGDA-----REVLAS-FPEASVHLVVTSPPYWTLKRYEDTPGQL------GHIEDYEAFLDELDRVWREVFRLLV 88 (297)
T ss_dssp CEEEEESCH-----HHHHTT-SCTTCEEEEEECCCCCCCC-------CC------HHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CCEEEECcH-----HHHHhh-CCCCceeEEEECCCCCCccccCCChhhh------cccccHHHHHHHHHHHHHHHHHHcC
Confidence 578999998 554432 3467899999999998755433221111 1122223455667889999999999
Q ss_pred cCcEEEEEEcCCC--------------HHHHHHHHHHcCCCCceeeEEEec
Q psy7093 271 PNGSIFLETNHDH--------------LDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 271 ~gG~l~~e~~~~~--------------~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
|||.++++++..+ ...+..++++.|+ .+...-+|.
T Consensus 89 ~~G~l~i~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf--~~~~~iiW~ 137 (297)
T 2zig_A 89 PGGRLVIVVGDVAVARRRFGRHLVFPLHADIQVRCRKLGF--DNLNPIIWH 137 (297)
T ss_dssp EEEEEEEEECCEEEECC----EEEECHHHHHHHHHHHTTC--EEEEEEEEE
T ss_pred CCcEEEEEECCCccccccCCcccccccHHHHHHHHHHcCC--eeeccEEEe
Confidence 9999999998543 1357777888774 233333453
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-07 Score=81.72 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=68.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+...+ +..++|.+||.|..+..+++. +.+|+|+|.++.+++.|++ +.. ++++++++|+
T Consensus 9 VLl~e~le~L~~~~--gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f---- 75 (285)
T 1wg8_A 9 VLYQEALDLLAVRP--GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNF---- 75 (285)
T ss_dssp TTHHHHHHHHTCCT--TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCG----
T ss_pred HHHHHHHHhhCCCC--CCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCc----
Confidence 35566667666543 379999999999999999998 6799999999999999987 532 5799999997
Q ss_pred cccccCc---CcCCCCeeEEEEcCCCC
Q psy7093 204 QVKNLQP---DLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 204 ~~~~l~~---~~~~~~fDlIv~NPPy~ 227 (322)
..+.. ....+++|.|++|++|.
T Consensus 76 --~~l~~~L~~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 76 --RHLKRHLAALGVERVDGILADLGVS 100 (285)
T ss_dssp --GGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred --chHHHHHHHcCCCCcCEEEeCCccc
Confidence 23221 11235799999999864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-06 Score=75.91 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN 187 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~ 187 (322)
|.+-...+++.+++.... ++..|||+|||||.++++++.. +.+++|+|+++.+++.|++|+....
T Consensus 217 ~~~~p~~l~~~~i~~~~~---~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 217 PAPFPLELAERLVRMFSF---VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp -CCSCHHHHHHHHHHHCC---TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhCC---CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 455567888888887753 2379999999999999998887 6899999999999999999997653
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-06 Score=77.21 Aligned_cols=136 Identities=10% Similarity=0.021 Sum_probs=78.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||||||.|.++..++...+...++|+|++.+........ ...+ .++..++.++ +.. .+..++||+|
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~------dv~--~l~~~~~DlV 144 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKT------DIH--RLEPVKCDTL 144 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSC------CTT--TSCCCCCSEE
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccc------eeh--hcCCCCccEE
Confidence 689999999999999888876667888999874321000000 0001 1244455654 111 1345789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH--HHHHHHhccCccC-cEEEEEEcCCCHHHHHHHHHHcCCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK--PICVFGSNYLKPN-GSIFLETNHDHLDKIKEWLGICGHH 297 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~--~~l~~~~~~Lk~g-G~l~~e~~~~~~~~~~~~l~~~~~~ 297 (322)
+||-.-. +.. .-.|.++ .+++.+.++|+|| |.+++-+=...+....+++.....
T Consensus 145 lsD~apn-sG~---------------------~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~- 201 (277)
T 3evf_A 145 LCDIGES-SSS---------------------SVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQR- 201 (277)
T ss_dssp EECCCCC-CSC---------------------HHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH-
T ss_pred EecCccC-cCc---------------------hHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHH-
Confidence 9974221 110 0112222 3478899999999 999986643223333333332211
Q ss_pred CceeeEEEecCCCCC
Q psy7093 298 MKLKLVENYKDFNNK 312 (322)
Q Consensus 298 ~~~~~v~~~~D~~g~ 312 (322)
.|..|.+.+- +.+
T Consensus 202 -~F~~V~~~KP-aSR 214 (277)
T 3evf_A 202 -RFGGTVIRNP-LSR 214 (277)
T ss_dssp -HHCCEEECCT-TSC
T ss_pred -hcCCEEEEeC-CCC
Confidence 2777888776 544
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.8e-06 Score=76.73 Aligned_cols=137 Identities=12% Similarity=0.004 Sum_probs=79.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||||||.|.++..++...+...|+|+|++......+... ...+ .++.....++. ... +...++|+
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~d----v~~----l~~~~~Dv 159 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTD----VFN----MEVIPGDT 159 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCC----GGG----SCCCCCSE
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcc----hhh----cCCCCcCE
Confidence 3689999999999999998877777899999986432111100 0011 12333343330 111 24578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH--HHHHHHhccCccC--cEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK--PICVFGSNYLKPN--GSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~--~~l~~~~~~Lk~g--G~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
|+|+-.-. +. ..-.|.++ .+++.+.++|+|| |.+++-+=...+....+++....
T Consensus 160 VLSDmApn-sG---------------------~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk 217 (282)
T 3gcz_A 160 LLCDIGES-SP---------------------SIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQ 217 (282)
T ss_dssp EEECCCCC-CS---------------------CHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHH
T ss_pred EEecCccC-CC---------------------ChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHH
Confidence 99974322 11 11122222 3588889999999 99988764321333333333211
Q ss_pred CCCceeeEEEecCCCCC
Q psy7093 296 HHMKLKLVENYKDFNNK 312 (322)
Q Consensus 296 ~~~~~~~v~~~~D~~g~ 312 (322)
. .|..|.+.+- +.+
T Consensus 218 ~--~F~~V~~~KP-aSR 231 (282)
T 3gcz_A 218 L--KHGGGLVRVP-LSR 231 (282)
T ss_dssp H--HHCCEEECCT-TSC
T ss_pred H--hcCCEEEEcC-CCc
Confidence 1 2677887776 444
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-05 Score=70.62 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=75.7
Q ss_pred CCeEEEEcCchhHHHHHHHHh-----------------CCCCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKH-----------------FPKLKAIAIDQS-----------KHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~-----------------~~~~~v~~vDis-----------~~al~~A~~n~~~~~l~~~ 191 (322)
+.+|+|+||++|..++.+... .|..+|+..|+. +...+.++ +..+...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 378999999999998888776 356789999987 43333221 12221112
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc---cccc-cCCCChh-----------H
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED---IKAL-DGGHDGL-----------N 256 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep---~~al-~~g~~gl-----------~ 256 (322)
..|+.+.. -..-...++.+++|+|+||-..++..+....-.+. .-| .... ..+...- .
T Consensus 130 ~~f~~gvp-----gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~--~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~ 202 (384)
T 2efj_A 130 SCLIGAMP-----GSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE--LGISVNKGCIYSSKASRPPIQKAYLDQFTK 202 (384)
T ss_dssp SEEEEECC-----SCTTSCCSCTTCEEEEEEESCTTBCSSSCCC--------CCCCTTCSSSCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEecc-----hhhhhccCCCCceEEEEecceeeecCCCchhhhcc--ccccccCCceEecCCCCHHHHHHHHHHHHH
Confidence 35555543 11112235788999999998887765543110000 000 0000 0000000 1
Q ss_pred HHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 257 IIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 257 ~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
-+..|++...+.|+|||.+++++.-
T Consensus 203 D~~~FL~~Ra~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 203 DFTTFLRIHSEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCeEEEEEec
Confidence 1346688889999999999998753
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=71.57 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=53.4
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN 187 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~ 187 (322)
.|.+-...+++.+++.... ++..|||++||||..++++++. +.+++|+|+++.+++.|++|++..+
T Consensus 193 ~~~~~p~~l~~~~i~~~~~---~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 193 HITPKPRDLIERIIRASSN---PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp --CCCCHHHHHHHHHHHCC---TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHhCC---CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 3555667888888877653 2379999999999999998887 7899999999999999999987654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.90 E-value=4.3e-05 Score=70.70 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCC----CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 123 EELIDIITDKLESSNH----TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~----~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
..+++.+++.+..... ++..|||+|+|.|.++..++......+|+++|+++..+...++.. . .++++++++|
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D 113 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRD 113 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSC
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECC
Confidence 3456666666543211 237899999999999999998644568999999999998887765 1 3579999999
Q ss_pred C
Q psy7093 199 I 199 (322)
Q Consensus 199 ~ 199 (322)
+
T Consensus 114 ~ 114 (353)
T 1i4w_A 114 P 114 (353)
T ss_dssp T
T ss_pred c
Confidence 8
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-05 Score=74.85 Aligned_cols=135 Identities=9% Similarity=0.023 Sum_probs=78.5
Q ss_pred CCeEEEEcCchhHHHHHHHHh----------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 140 PTRMIEIGSGTGAITISLLKH----------------FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~----------------~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
+.+|+|+||++|..++.+... .|..+|+..|+...-....-+++......++..|+.+..
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvp---- 127 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVP---- 127 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEE----
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecc----
Confidence 368999999999776655544 456789999998877776665543221111234544432
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCC-CCh-----hhhccccccc--ccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPK-LEP-----EIALYEDIKA--LDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~-l~~-----~v~~~ep~~a--l~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
-..-...++.+++|+|+||-..++-..... +.. .+..-.|... .+.. .--.-+..|++...+.|+|||.+
T Consensus 128 -gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~-Qf~~D~~~FL~~Ra~EL~pGG~m 205 (359)
T 1m6e_X 128 -GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYK-QFQEDHALFLRCRAQEVVPGGRM 205 (359)
T ss_dssp -SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHH-HHHHHHHHHHHHHHHHBCTTCEE
T ss_pred -hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCceE
Confidence 111112357889999999988776554331 110 0000000000 0000 00122467888899999999999
Q ss_pred EEEEc
Q psy7093 276 FLETN 280 (322)
Q Consensus 276 ~~e~~ 280 (322)
++++.
T Consensus 206 vl~~~ 210 (359)
T 1m6e_X 206 VLTIL 210 (359)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99874
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.4e-05 Score=70.12 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCeEEEEcCchhHHHHHHHHh--------C-------CCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEE
Q psy7093 140 PTRMIEIGSGTGAITISLLKH--------F-------PKLKAIAIDQSKHACDLTEQNAVMHN-----------VANQLQ 193 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~--------~-------~~~~v~~vDis~~al~~A~~n~~~~~-----------l~~~i~ 193 (322)
+.+|+|+|||+|..++.++.. + |..+|+..|+...-....=+++.... ...+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999998887443 1 45666777765443322222221110 000011
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC-------Ch-h--------HH
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH-------DG-L--------NI 257 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~-------~g-l--------~~ 257 (322)
|+.+.- -..-...++.++||+|+||-..++-.+.. ..+... -..++-.|. .. . .-
T Consensus 133 f~~gvp-----gSFy~rlfP~~S~d~v~Ss~aLHWls~~p---~~l~~~-~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D 203 (374)
T 3b5i_A 133 FVAGVP-----GSFYRRLFPARTIDFFHSAFSLHWLSQVP---ESVTDR-RSAAYNRGRVFIHGAGEKTTTAYKRQFQAD 203 (374)
T ss_dssp EEEEEE-----SCTTSCCSCTTCEEEEEEESCTTBCSSCC---GGGGCT-TSTTCCTTTSSSSSCCHHHHHHHHHHHHHH
T ss_pred EEEecC-----hhhhcccCCCcceEEEEecceeeeeccCc---hhhhcc-ccccccCCceEeCCCCHHHHHHHHHHHHHH
Confidence 222111 00001124678999999998877755432 121110 000000000 00 0 11
Q ss_pred HHHHHHHHhccCccCcEEEEEEc
Q psy7093 258 IKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 258 ~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+..+++...+.|+|||.+++++.
T Consensus 204 ~~~fL~~ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 204 LAEFLRARAAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEe
Confidence 35678888999999999999875
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.3e-05 Score=71.51 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=67.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
+++.+++.+...+ +..++|.++|.|.-+..+++.+ |..+|+|+|.++.|++.|+ ++ ..+++++++++.
T Consensus 45 Ll~Evl~~L~i~p--ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF---- 113 (347)
T 3tka_A 45 LLDEAVNGLNIRP--DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPF---- 113 (347)
T ss_dssp TTHHHHHHTCCCT--TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCG----
T ss_pred cHHHHHHhhCCCC--CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCH----
Confidence 5566777776543 3799999999999999999986 6789999999999999984 33 246899999987
Q ss_pred cccccCcCc----CCCCeeEEEEcCCCC
Q psy7093 204 QVKNLQPDL----LEQKFDLVVSNPPYV 227 (322)
Q Consensus 204 ~~~~l~~~~----~~~~fDlIv~NPPy~ 227 (322)
..+...+ ..+++|.|+.|..|.
T Consensus 114 --~~l~~~L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 114 --SALGEYVAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp --GGHHHHHHHTTCTTCEEEEEEECSCC
T ss_pred --HHHHHHHHhcCCCCcccEEEECCccC
Confidence 2221111 113699999988753
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.77 E-value=8.3e-05 Score=68.06 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=63.3
Q ss_pred CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC
Q psy7093 190 NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269 (322)
Q Consensus 190 ~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L 269 (322)
.+..++++|. ++.+. .++.++||+|++||||....+.. |... ..++-+..+...+..+.++|
T Consensus 13 ~~~~ii~gD~-----~~~l~-~l~~~svDlI~tDPPY~~~~~~~--------y~~~----~~~~~~~~l~~~l~~~~rvL 74 (323)
T 1boo_A 13 SNGSMYIGDS-----LELLE-SFPEESISLVMTSPPFALQRKKE--------YGNL----EQHEYVDWFLSFAKVVNKKL 74 (323)
T ss_dssp SSEEEEESCH-----HHHGG-GSCSSCEEEEEECCCCSSSCSCS--------SCSC----HHHHHHHHHHHHHHHHHHHE
T ss_pred CCceEEeCcH-----HHHHh-hCCCCCeeEEEECCCCCCCcccc--------cCCc----CHHHHHHHHHHHHHHHHHHC
Confidence 3578899998 55443 23567899999999997654211 1100 00111345678889999999
Q ss_pred ccCcEEEEEEcCC--C---------HHHHHHHHHHcCCCCceeeEEEecC
Q psy7093 270 KPNGSIFLETNHD--H---------LDKIKEWLGICGHHMKLKLVENYKD 308 (322)
Q Consensus 270 k~gG~l~~e~~~~--~---------~~~~~~~l~~~~~~~~~~~v~~~~D 308 (322)
+|||.++++++.. . ...+.++++..|+ .|...-+|..
T Consensus 75 k~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~~~~Gf--~~~~~iiW~k 122 (323)
T 1boo_A 75 KPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGF--FLAEDFYWFN 122 (323)
T ss_dssp EEEEEEEEEECCCEETTEEEECCHHHHHHHHHHHTTCC--EEEEEEEEEC
T ss_pred cCCcEEEEEECCEecCCCcccccchHHHHHHHHHhCCC--EEEEEEEEec
Confidence 9999999999875 1 2345556666664 3444446643
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.5e-05 Score=68.84 Aligned_cols=134 Identities=7% Similarity=-0.033 Sum_probs=75.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+||||||+.|.++..+++..+...|+|+|+.......... ....+ ..+.....++ +.. .+..+++|+
T Consensus 82 g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~--~~iv~~~~~~------di~--~l~~~~~Dl 150 (300)
T 3eld_A 82 TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG--WNIVKFKDKS------NVF--TMPTEPSDT 150 (300)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT--GGGEEEECSC------CTT--TSCCCCCSE
T ss_pred CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC--CceEEeecCc------eee--ecCCCCcCE
Confidence 479999999999999999987666789999997532100000 00001 1122233222 100 124568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH--HHHHHHHhccCccC-cEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII--KPICVFGSNYLKPN-GSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~--~~~l~~~~~~Lk~g-G~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
|+||-.-. +. ..-.|.+ ..++..+.++|+|| |.+++-+=...+....+++.....
T Consensus 151 VlsD~APn-sG---------------------~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~ 208 (300)
T 3eld_A 151 LLCDIGES-SS---------------------NPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQL 208 (300)
T ss_dssp EEECCCCC-CS---------------------SHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHH
T ss_pred EeecCcCC-CC---------------------CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHH
Confidence 99974211 11 1111222 23488889999999 999886633123333333332211
Q ss_pred CCceeeEEEecC
Q psy7093 297 HMKLKLVENYKD 308 (322)
Q Consensus 297 ~~~~~~v~~~~D 308 (322)
.|..|.+.+-
T Consensus 209 --~F~~V~~~KP 218 (300)
T 3eld_A 209 --RFGGGIVRVP 218 (300)
T ss_dssp --HHCCEEECCT
T ss_pred --hCCcEEEEeC
Confidence 2677887775
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.58 E-value=3.5e-05 Score=71.21 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=54.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+++|++||+|.+++.+...-- -..|+++|+++.|++..+.|... ..++++|+ .+.....+....+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di-----~~~~~~~~~~~~~D~ 71 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTI-----EGITLEEFDRLSFDM 71 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCG-----GGCCHHHHHHHCCSE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCH-----HHccHhHcCcCCcCE
Confidence 6899999999999999988711 13689999999999999988632 34677888 222111111126899
Q ss_pred EEEcCCCCCCC
Q psy7093 220 VVSNPPYVPSL 230 (322)
Q Consensus 220 Iv~NPPy~~~~ 230 (322)
|+.+||+-+.+
T Consensus 72 l~~gpPCq~fS 82 (343)
T 1g55_A 72 ILMSPPCQPFT 82 (343)
T ss_dssp EEECCC-----
T ss_pred EEEcCCCcchh
Confidence 99999976544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.56 E-value=4.7e-05 Score=67.48 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=61.2
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCC-CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPS-LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~-~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
.+++++|. ++.+.. ++.++||+|+++|||... .+..... ..++=+.++...++.+.++|+
T Consensus 5 ~~l~~gD~-----~~~l~~-l~~~~vdlI~~DPPY~~~~~~~d~~~-------------~~~~y~~~~~~~l~~~~~~Lk 65 (260)
T 1g60_A 5 NKIHQMNC-----FDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFD-------------SHNEFLAFTYRWIDKVLDKLD 65 (260)
T ss_dssp SSEEECCH-----HHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCS-------------SHHHHHHHHHHHHHHHHHHEE
T ss_pred CeEEechH-----HHHHHh-ccccccCEEEECCCCCCCcccccccC-------------CHHHHHHHHHHHHHHHHHHhc
Confidence 45778887 554432 345789999999999754 2111100 001113456788888999999
Q ss_pred cCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 271 PNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 271 ~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
|+|.++++++......+..++.+.++ .|...-+|.
T Consensus 66 ~~g~i~v~~~d~~~~~~~~~~~~~gf--~~~~~iiW~ 100 (260)
T 1g60_A 66 KDGSLYIFNTPFNCAFICQYLVSKGM--IFQNWITWD 100 (260)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHTTC--EEEEEEEEC
T ss_pred CCeEEEEEcCcHHHHHHHHHHHhhcc--ceeEEEEEE
Confidence 99999999865555556666777664 455545564
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00066 Score=58.63 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=67.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~~~fD 218 (322)
..+|+|+||+.|.++..++...+..+|+|+|+-..--+.-+ ..+.+|. +-++|.++ |+ +. + +..++|
T Consensus 79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~gw-n~v~fk~gvDv-----~~-~----~~~~~D 146 (267)
T 3p8z_A 79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYGW-NIVKLMSGKDV-----FY-L----PPEKCD 146 (267)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTTT-TSEEEECSCCG-----GG-C----CCCCCS
T ss_pred CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcCc-CceEEEeccce-----ee-c----CCcccc
Confidence 36999999999999998888877778999999753210000 0112232 35999999 86 32 2 235799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.|+|+--=.+ -.+++- .-. .-++++.+.++|++ |-+++-+
T Consensus 147 tllcDIgeSs------~~~~vE-------------~~R-tlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 147 TLLCDIGESS------PSPTVE-------------ESR-TIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp EEEECCCCCC------SCHHHH-------------HHH-HHHHHHHHGGGCSS-CEEEEEE
T ss_pred EEEEecCCCC------CChhhh-------------hhH-HHHHHHHHHHhccc-CCEEEEE
Confidence 9999631111 111110 000 12478888999999 6666654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00058 Score=60.85 Aligned_cols=136 Identities=15% Similarity=0.232 Sum_probs=81.7
Q ss_pred HHHHHHhccCC---CCCCeEEEEcC------chhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 127 DIITDKLESSN---HTPTRMIEIGS------GTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 127 ~~i~~~~~~~~---~~~~~iLDlg~------GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
..+.+.+.... ..+.+|||+|+ -.|.. .+.+..|. ..|+++|+.+-. ...+ .+++
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sda~--~~Iq 158 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SDAD--STLI 158 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CSSS--EEEE
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cCCC--eEEE
Confidence 34556664311 13479999996 45553 33444565 699999998732 1112 4589
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|. .+. . ..++||+|+|+..=-.+.... .+. ...+.+.+.++..+.++|+|||.++
T Consensus 159 GD~-----~~~-~---~~~k~DLVISDMAPNtTG~~D---------~d~------~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 159 GDC-----ATV-H---TANKWDLIISDMYDPRTKHVT---------KEN------DSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp SCG-----GGE-E---ESSCEEEEEECCCCTTSCSSC---------SCC------CCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred ccc-----ccc-c---cCCCCCEEEecCCCCcCCccc---------cch------hHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 997 322 1 357899999974211111100 000 0123457889999999999999999
Q ss_pred EEE--cCCCHHHHHHHHHHcCCCCceeeEEEecC
Q psy7093 277 LET--NHDHLDKIKEWLGICGHHMKLKLVENYKD 308 (322)
Q Consensus 277 ~e~--~~~~~~~~~~~l~~~~~~~~~~~v~~~~D 308 (322)
+-+ |... +.+.++.+ .|..++++++
T Consensus 215 VKVFQGsg~-~~L~~lrk------~F~~VK~fK~ 241 (344)
T 3r24_A 215 VKITEHSWN-ADLYKLMG------HFSWWTAFVT 241 (344)
T ss_dssp EEECSSSCC-HHHHHHHT------TEEEEEEEEE
T ss_pred EEEecCCCH-HHHHHHHh------hCCeEEEECC
Confidence 876 3442 44555543 2888888863
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00026 Score=64.83 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=56.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+++|++||+|.+++.+.+. +-..+.++|+++.+++..+.|.... . ++|+ .+..... ...+|+|
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di-----~~~~~~~--~~~~D~l 75 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDI-----TQVNEKT--IPDHDIL 75 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCG-----GGSCGGG--SCCCSEE
T ss_pred CcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCH-----HHcCHhh--CCCCCEE
Confidence 68999999999999998876 3345789999999999999987421 1 5787 3222111 2358999
Q ss_pred EEcCCCCCCCC
Q psy7093 221 VSNPPYVPSLD 231 (322)
Q Consensus 221 v~NPPy~~~~~ 231 (322)
+..||+-..+.
T Consensus 76 ~~gpPCQ~fS~ 86 (327)
T 2c7p_A 76 CAGFPCQAFSI 86 (327)
T ss_dssp EEECCCTTTCT
T ss_pred EECCCCCCcch
Confidence 99999977654
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0001 Score=64.46 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEc-cCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM--HNVANQLQVFHA-EIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~--~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|+||||+.|..+..++...+-..|.|.++..+. .. .-... .|+ +-++|.++ |+ ++ + ...+
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~--~P~~~~~~Gv-~~i~~~~G~Df-----~~-~----~~~~ 139 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE--EPMLMQSYGW-NIVTMKSGVDV-----FY-K----PSEI 139 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC--CCCCCCSTTG-GGEEEECSCCG-----GG-S----CCCC
T ss_pred CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc--CCCcccCCCc-eEEEeeccCCc-----cC-C----CCCC
Confidence 479999999999999999886322233444443320 00 00000 111 11355557 98 33 2 3457
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc-EEEEEEcCCCHHHHHHHHHHcC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG-SIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG-~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
+|+|+|+..=. +.. ..+ |-...+. .+..+.++|+||| .+++-+=....+.+.++++.-.
T Consensus 140 ~DvVLSDMAPn-SG~-----~~v-------------D~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk 199 (269)
T 2px2_A 140 SDTLLCDIGES-SPS-----AEI-------------EEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQ 199 (269)
T ss_dssp CSEEEECCCCC-CSC-----HHH-------------HHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHH
T ss_pred CCEEEeCCCCC-CCc-----cHH-------------HHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHH
Confidence 99999974211 111 111 0011112 6788889999999 8877653332244444322211
Q ss_pred CCCceeeEEEecC
Q psy7093 296 HHMKLKLVENYKD 308 (322)
Q Consensus 296 ~~~~~~~v~~~~D 308 (322)
. .|..+.+.+.
T Consensus 200 ~--~F~~vkvk~p 210 (269)
T 2px2_A 200 R--RFGGGLVRVP 210 (269)
T ss_dssp H--HHCCEEECCT
T ss_pred H--HcCCEEEECC
Confidence 0 2566776655
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00025 Score=66.28 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=57.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-----CC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-----LE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~-~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-----~~ 214 (322)
.+++|++||.|.+++.+... +. .+.++|+++.+++..+.|.. ...++++|+ .+.....+ ..
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI-----~~~~~~~~~~~~~~~ 69 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP------RSLHVQEDV-----SLLNAEIIKGFFKND 69 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT------TSEEECCCG-----GGCCHHHHHHHHCSC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC------CCceEecCh-----hhcCHHHHHhhcccC
Confidence 58999999999999999887 45 46799999999999888852 256788898 22211111 24
Q ss_pred CCeeEEEEcCCCCCCC
Q psy7093 215 QKFDLVVSNPPYVPSL 230 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~ 230 (322)
..+|+|+..||.-..+
T Consensus 70 ~~~D~i~ggpPCQ~fS 85 (376)
T 3g7u_A 70 MPIDGIIGGPPCQGFS 85 (376)
T ss_dssp CCCCEEEECCCCCTTC
T ss_pred CCeeEEEecCCCCCcc
Confidence 5799999999965544
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00045 Score=61.57 Aligned_cols=108 Identities=8% Similarity=0.076 Sum_probs=66.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~~~fD 218 (322)
..+||||||++|.++..++...+..+|+|+|+...--+.-+ ..+.++. +-|.+..+ |+ ..+ ...++|
T Consensus 95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv------~~l----~~~~~D 162 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDV------FYR----PSECCD 162 (321)
T ss_dssp CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCT------TSS----CCCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCH------hhC----CCCCCC
Confidence 36999999999999998888876678999999764110000 0011121 23777777 76 223 235699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC-cEEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN-GSIFLET 279 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g-G~l~~e~ 279 (322)
+|+|+-- -++. .+++- .-. .-++++.+.++|++| |-+++-+
T Consensus 163 ~ivcDig-eSs~-----~~~ve-------------~~R-tl~vLel~~~wL~~~~~~f~~KV 204 (321)
T 3lkz_A 163 TLLCDIG-ESSS-----SAEVE-------------EHR-TIRVLEMVEDWLHRGPREFCVKV 204 (321)
T ss_dssp EEEECCC-CCCS-----CHHHH-------------HHH-HHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECc-cCCC-----Chhhh-------------hhH-HHHHHHHHHHHhccCCCcEEEEE
Confidence 9999743 1111 11110 000 124788888999999 8777755
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0029 Score=58.59 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=50.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.++||+||+.|.++..++++ +.+|+|||+.+-.- .+. . ..+|+++++|. +...+ ..++||+
T Consensus 212 G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~-----~l~--~-~~~V~~~~~d~-----~~~~~---~~~~~D~ 273 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQ-----SLM--D-TGQVTWLREDG-----FKFRP---TRSNISW 273 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCH-----HHH--T-TTCEEEECSCT-----TTCCC---CSSCEEE
T ss_pred CCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcCh-----hhc--c-CCCeEEEeCcc-----ccccC---CCCCcCE
Confidence 479999999999999999988 78999999864211 111 1 24699999998 55433 3468999
Q ss_pred EEEcC
Q psy7093 220 VVSNP 224 (322)
Q Consensus 220 Iv~NP 224 (322)
|+|+.
T Consensus 274 vvsDm 278 (375)
T 4auk_A 274 MVCDM 278 (375)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99964
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00063 Score=62.10 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=62.9
Q ss_pred cEEEE-EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC
Q psy7093 191 QLQVF-HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269 (322)
Q Consensus 191 ~i~~~-~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L 269 (322)
...++ ++|. ++.+. .++.++||+|+++|||....+ .+. ..++=++.+...+..+.++|
T Consensus 38 ~~~l~i~gD~-----l~~L~-~l~~~svDlI~tDPPY~~~~d---------~~~------~~~~~~~~~~~~l~~~~rvL 96 (319)
T 1eg2_A 38 TRHVYDVCDC-----LDTLA-KLPDDSVQLIICDPPYNIMLA---------DWD------DHMDYIGWAKRWLAEAERVL 96 (319)
T ss_dssp EEEEEEECCH-----HHHHH-TSCTTCEEEEEECCCSBCCGG---------GGG------TCSSHHHHHHHHHHHHHHHE
T ss_pred cceEEECCcH-----HHHHH-hCccCCcCEEEECCCCCCCCC---------Ccc------CHHHHHHHHHHHHHHHHHHc
Confidence 36778 9998 55543 235678999999999975411 010 01122345678888899999
Q ss_pred ccCcEEEEEEcCCCH--------HHHHHHHHHcC-CCCceeeEEEecC
Q psy7093 270 KPNGSIFLETNHDHL--------DKIKEWLGICG-HHMKLKLVENYKD 308 (322)
Q Consensus 270 k~gG~l~~e~~~~~~--------~~~~~~l~~~~-~~~~~~~v~~~~D 308 (322)
+|||.++++++.... ..+...+...| + .|...-+|..
T Consensus 97 k~~G~i~i~~~~~~~~~~~~~~l~~l~~~i~~~G~~--~~~~~IIW~K 142 (319)
T 1eg2_A 97 SPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKM--LLANLIIWNY 142 (319)
T ss_dssp EEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCC--EEEEEEEEEC
T ss_pred CCCeEEEEEcCcccccccccccHHHHHHHHhCcccc--eeEEEEEEEC
Confidence 999999999987654 55666666554 3 3555556643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0005 Score=62.83 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=54.4
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV 188 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l 188 (322)
.|.+-...+++.+++.... ++..|||.+||||..++++... +.+.+|+|+++.+++.|++++...+.
T Consensus 233 ~~~~kp~~l~~~~i~~~~~---~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 233 HPARFPAKLPEFFIRMLTE---PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDNNI 299 (323)
T ss_dssp CSSCCCTHHHHHHHHHHCC---TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred CCCcCCHHHHHHHHHHhCC---CCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence 3555556788888876643 3379999999999999988877 78999999999999999988776553
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00071 Score=61.71 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=53.3
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCH---HHHHHHHHHHHHcC
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSK---HACDLTEQNAVMHN 187 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~---~al~~A~~n~~~~~ 187 (322)
.|.+-...+++.+++..... +..|||.+||||..++++... +.+.+|+|+++ ..++.|++++...+
T Consensus 223 ~~~~kp~~l~~~~i~~~~~~---~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 223 HPTQKPAAVIERLVRALSHP---GSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CTTCCCHHHHHHHHHHHSCT---TCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCCHHHHHHHHHHhCCC---CCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 46666788999988876543 379999999999999999888 78999999999 99999998876544
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=58.82 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=56.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCE---EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC-CC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLK---AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL-EQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~---v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~-~~ 215 (322)
+.+++|++||.|.+++.+.+. +.+ |.++|+++.+.+.-+.|.. ...++.+|+ .+.....++ .+
T Consensus 16 ~~~vidLFaG~GG~~~g~~~a--G~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI-----~~i~~~~i~~~~ 82 (295)
T 2qrv_A 16 PIRVLSLFDGIATGLLVLKDL--GIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDV-----RSVTQKHIQEWG 82 (295)
T ss_dssp CEEEEEETCTTTHHHHHHHHT--TBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCG-----GGCCHHHHHHTC
T ss_pred CCEEEEeCcCccHHHHHHHHC--CCccceEEEEECCHHHHHHHHHhCC------CCceeCCCh-----HHccHHHhcccC
Confidence 368999999999999988876 443 5899999999988877742 245778898 222111111 24
Q ss_pred CeeEEEEcCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSL 230 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~ 230 (322)
.+|+++.-||+-+.+
T Consensus 83 ~~Dll~ggpPCQ~fS 97 (295)
T 2qrv_A 83 PFDLVIGGSPCNDLS 97 (295)
T ss_dssp CCSEEEECCCCGGGB
T ss_pred CcCEEEecCCCcccc
Confidence 699999999986644
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00075 Score=61.76 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=54.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC-CCCEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-PKLKA-IAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-~~~~v-~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+++|++||.|.+++.+...- +...+ .++|+++.|.+.-+.|... . ++++|+ .+.....++...+|
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~--~~~~DI-----~~~~~~~i~~~~~D 78 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E--VQVKNL-----DSISIKQIESLNCN 78 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C--CBCCCT-----TTCCHHHHHHTCCC
T ss_pred CEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C--cccCCh-----hhcCHHHhccCCCC
Confidence 689999999999999988761 12356 7999999999999988631 1 456787 22111112223689
Q ss_pred EEEEcCCCCCC
Q psy7093 219 LVVSNPPYVPS 229 (322)
Q Consensus 219 lIv~NPPy~~~ 229 (322)
+++..||.-+.
T Consensus 79 il~ggpPCQ~f 89 (327)
T 3qv2_A 79 TWFMSPPCQPY 89 (327)
T ss_dssp EEEECCCCTTC
T ss_pred EEEecCCccCc
Confidence 99999996554
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0014 Score=60.22 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=55.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+++|++||.|.++..+...-- ...|.++|+++.+.+.-+.|... ..++++|+ .+.....++...+|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI-----~~~~~~~~~~~~~D~ 72 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNI-----QQLTPQVIKKWNVDT 72 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCG-----GGCCHHHHHHTTCCE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------Cceecccc-----ccCCHHHhccCCCCE
Confidence 5899999999999999887611 13578999999999988877531 34567887 222111122236899
Q ss_pred EEEcCCCCCCC
Q psy7093 220 VVSNPPYVPSL 230 (322)
Q Consensus 220 Iv~NPPy~~~~ 230 (322)
++..||.-+.+
T Consensus 73 l~ggpPCQ~fS 83 (333)
T 4h0n_A 73 ILMSPPCQPFT 83 (333)
T ss_dssp EEECCCCCCSE
T ss_pred EEecCCCcchh
Confidence 99999976543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.044 Score=49.36 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=82.1
Q ss_pred CeEEEEcCchhHHHHHHH----HhCCCC--EEEEEeCCH--------H-HHHHHHHHHHHcC-C-CCc--EEEEEccCCC
Q psy7093 141 TRMIEIGSGTGAITISLL----KHFPKL--KAIAIDQSK--------H-ACDLTEQNAVMHN-V-ANQ--LQVFHAEIDS 201 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la----~~~~~~--~v~~vDis~--------~-al~~A~~n~~~~~-l-~~~--i~~~~~D~~~ 201 (322)
.+|||+|-|+|.-.+... +..|.. +++.+|..+ . .-+....-..... . .++ +++..+|+
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa-- 175 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA-- 175 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH--
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH--
Confidence 689999999997544332 234554 456777522 1 1111221112110 0 122 46778888
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+.++. +...+||+|+.++ |.|... ++.+ . ..+++.+.++++|||.++- +
T Consensus 176 ---~~~l~~-l~~~~~Da~flDg-FsP~kN-----PeLW--s---------------~e~f~~l~~~~~pgg~laT---Y 225 (308)
T 3vyw_A 176 ---RKRIKE-VENFKADAVFHDA-FSPYKN-----PELW--T---------------LDFLSLIKERIDEKGYWVS---Y 225 (308)
T ss_dssp ---HHHGGG-CCSCCEEEEEECC-SCTTTS-----GGGG--S---------------HHHHHHHHTTEEEEEEEEE---S
T ss_pred ---HHHHhh-hcccceeEEEeCC-CCcccC-----cccC--C---------------HHHHHHHHHHhCCCcEEEE---E
Confidence 454443 2345799999986 544432 2222 1 3788999999999998863 6
Q ss_pred CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEE
Q psy7093 282 DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319 (322)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~ 319 (322)
.....|++-|...| |. |+..+-.-++.-++++.
T Consensus 226 taag~VRR~L~~aG----F~-V~k~~G~g~KReml~A~ 258 (308)
T 3vyw_A 226 SSSLSVRKSLLTLG----FK-VGSSREIGRKRKGTVAS 258 (308)
T ss_dssp CCCHHHHHHHHHTT----CE-EEEEECC---CEEEEEE
T ss_pred eCcHHHHHHHHHCC----CE-EEecCCCCCCCceeEEe
Confidence 66778999999987 44 44444333333445554
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.018 Score=54.21 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=49.2
Q ss_pred CCeEEEEcCchhHHHHHHH-HhCCC-CEEEEEeCCHHHHHHHHHHHHH--cCCC-CcEEEEEccC
Q psy7093 140 PTRMIEIGSGTGAITISLL-KHFPK-LKAIAIDQSKHACDLTEQNAVM--HNVA-NQLQVFHAEI 199 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la-~~~~~-~~v~~vDis~~al~~A~~n~~~--~~l~-~~i~~~~~D~ 199 (322)
+..|+|+|++.|..++.++ +..+. .+|+++|.+|...+..++|++. ++.. .++++++.-+
T Consensus 227 ~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al 291 (409)
T 2py6_A 227 SEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGA 291 (409)
T ss_dssp SCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEE
T ss_pred CCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEE
Confidence 3799999999999999988 55554 7999999999999999999988 3323 5688776554
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.011 Score=53.61 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=54.1
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+|+|++||.|.+++.+-.. +-.-+.++|+++.|.+.-+.|. + -.++.+|+ .+ +... .-...|+++
T Consensus 2 kvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI-----~~-i~~~-~~~~~D~l~ 66 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDI-----SK-ISSD-EFPKCDGII 66 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCG-----GG-CCGG-GSCCCSEEE
T ss_pred eEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCCh-----hh-CCHh-hCCcccEEE
Confidence 6999999999999988776 2234679999999998888774 2 35678998 22 2211 124689999
Q ss_pred EcCCCCCCC
Q psy7093 222 SNPPYVPSL 230 (322)
Q Consensus 222 ~NPPy~~~~ 230 (322)
.-||.-+.+
T Consensus 67 ggpPCQ~fS 75 (331)
T 3ubt_Y 67 GGPPSQSWS 75 (331)
T ss_dssp CCCCGGGTE
T ss_pred ecCCCCCcC
Confidence 999976543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.037 Score=49.10 Aligned_cols=125 Identities=13% Similarity=0.083 Sum_probs=76.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.+|=-|.++| ++.++++.+ .+++|+.+|.+.+.++.+.+.+ + .+...+.+|+.++...+.+... -..++
T Consensus 30 KvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 103 (273)
T 4fgs_A 30 KIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEAGR 103 (273)
T ss_dssp CEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 56666666555 444444432 2789999999999887665433 3 3477889999665543332111 02368
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.|++|.|.-......+..++.+..+.--..- +.-.-.+.+.+..+++.+|.++..
T Consensus 104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vN-------l~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRN-------VKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp EEEEEECCCCCCCCCTTSCCHHHHHHHHHHH-------THHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCChhhccHHHHHHHHHHH-------hHHHHHHHHHHHHHHhhCCeEEEE
Confidence 9999999876666666666655432111111 111345667778888888887663
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.065 Score=47.06 Aligned_cols=123 Identities=12% Similarity=0.141 Sum_probs=77.8
Q ss_pred CCeEEEEcCchhHHHHHHHHh-------CCCCEEEEEe-----CCH----------------------HHHHH---HHHH
Q psy7093 140 PTRMIEIGSGTGAITISLLKH-------FPKLKAIAID-----QSK----------------------HACDL---TEQN 182 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~-------~~~~~v~~vD-----is~----------------------~al~~---A~~n 182 (322)
+..|+|.|+-.|..++.++.. .+..+|++.| ..+ +.+.. ..+|
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 479999999999887776642 2467899999 221 11211 1222
Q ss_pred HHHcCC-CCcEEEEEccCCCcccccccCcC---cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH
Q psy7093 183 AVMHNV-ANQLQVFHAEIDSKGQVKNLQPD---LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258 (322)
Q Consensus 183 ~~~~~l-~~~i~~~~~D~~~~~~~~~l~~~---~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~ 258 (322)
.+..+. .++++++.+++ .+.++.. .+..+||+|..+-- .|+| +
T Consensus 150 ~~~~g~~~~~i~li~G~~-----~dTL~~~l~~~~~~~~dlv~ID~D---------------~Y~~-------------t 196 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDV-----RETVPRYLAENPQTVIALAYFDLD---------------LYEP-------------T 196 (257)
T ss_dssp TSTTTTSCCSEEEEESCH-----HHHHHHHHHHCTTCCEEEEEECCC---------------CHHH-------------H
T ss_pred hhhcCCCCCcEEEEEecH-----HHHHHHHHHhCCCCceEEEEEcCc---------------ccch-------------H
Confidence 234454 47899999998 5554431 23457999998521 0222 5
Q ss_pred HHHHHHHhccCccCcEEEEEE-cC----CCHHHHHHHHHHcC
Q psy7093 259 KPICVFGSNYLKPNGSIFLET-NH----DHLDKIKEWLGICG 295 (322)
Q Consensus 259 ~~~l~~~~~~Lk~gG~l~~e~-~~----~~~~~~~~~l~~~~ 295 (322)
...++.+...|+|||++++.- ++ ...+.+.+++.+++
T Consensus 197 ~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~~~~~ 238 (257)
T 3tos_A 197 KAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLGLDH 238 (257)
T ss_dssp HHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHHhhCC
Confidence 577888999999999999842 21 22455666666554
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.036 Score=53.18 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=55.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--------
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-------- 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~-~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-------- 211 (322)
.+++|++||.|.+++.+... +. .|.++|+++.+.+.-+.|... .....++++|+ .+.....
T Consensus 89 ~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI-----~~i~~~~~~~~~~~~ 158 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDI-----RDITLSHQEGVSDEA 158 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCT-----HHHHCTTCTTSCHHH
T ss_pred ceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc---CCCcceeccch-----hhhhhccccccchhh
Confidence 68999999999999988766 44 478999999999888877521 11245677887 2211000
Q ss_pred ------cCCCCeeEEEEcCCCCCCC
Q psy7093 212 ------LLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 212 ------~~~~~fDlIv~NPPy~~~~ 230 (322)
.....+|+|+.-||.-+.+
T Consensus 159 ~~~~i~~~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 159 AAEHIRQHIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HHHHHHHHSCCCSEEEEECCCCCC-
T ss_pred HHhhhhhcCCCCCEEEecCCCcchh
Confidence 0124689999999976544
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.044 Score=54.96 Aligned_cols=125 Identities=16% Similarity=0.244 Sum_probs=76.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC-------CC-----CEEEEEeC---CHHHHHHHHHH-----------HHHc-----C--
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-------PK-----LKAIAIDQ---SKHACDLTEQN-----------AVMH-----N-- 187 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-------~~-----~~v~~vDi---s~~al~~A~~n-----------~~~~-----~-- 187 (322)
.+|+|+|.|+|.-.+++.+.+ |. .+++.+|. +.+-+..|-.. +..+ +
T Consensus 60 ~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 139 (689)
T 3pvc_A 60 CIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCH 139 (689)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEE
T ss_pred eEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCce
Confidence 689999999998877776642 21 57999998 55444433211 1111 1
Q ss_pred ---CCC---cEEEEEccCCCcccccccCcCc--CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH
Q psy7093 188 ---VAN---QLQVFHAEIDSKGQVKNLQPDL--LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259 (322)
Q Consensus 188 ---l~~---~i~~~~~D~~~~~~~~~l~~~~--~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~ 259 (322)
+.+ +++++.+|+ .+.++... ....+|.++.++ |.+....+-+ . .
T Consensus 140 r~~~~~~~~~l~l~~gd~-----~~~l~~~~~~~~~~~da~flD~-f~p~~np~~w-------~---------------~ 191 (689)
T 3pvc_A 140 RILLADGAITLDLWFGDV-----NTLLPTLDDSLNNQVDAWFLDG-FAPAKNPDMW-------N---------------E 191 (689)
T ss_dssp EEEETTTTEEEEEEESCH-----HHHGGGCCGGGTTCEEEEEECS-SCC--CCTTC-------S---------------H
T ss_pred EEEecCCcEEEEEEccCH-----HHHHhhcccccCCceeEEEECC-CCCCCChhhh-------h---------------H
Confidence 111 466788887 44444210 146899999986 4333221111 1 2
Q ss_pred HHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 260 PICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 260 ~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
.++..+.++++|||.+.- +.....+++.+.+.|+
T Consensus 192 ~~~~~l~~~~~~g~~~~t---~~~~~~vr~~l~~aGf 225 (689)
T 3pvc_A 192 QLFNAMARMTRPGGTFST---FTAAGFVRRGLQQAGF 225 (689)
T ss_dssp HHHHHHHHHEEEEEEEEE---SCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCEEEe---ccCcHHHHHHHHhCCe
Confidence 577777889999998753 4445678888888873
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.024 Score=52.31 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=35.4
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-+|+|. |.+++.+|+.....+|+++|.+++.++.+++
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 347899999986 8889999988654489999999998888763
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.055 Score=47.46 Aligned_cols=96 Identities=8% Similarity=0.050 Sum_probs=63.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=-| |++.++.++++.+ .+++|+.+|.+++.++.+.+.+...+ .++..+.+|+.++...+.+... -..++
T Consensus 10 KvalVTG-as~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 86 (255)
T 4g81_D 10 KTALVTG-SARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEGIH 86 (255)
T ss_dssp CEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 4555545 4445555555433 37899999999999888877777665 3488899999665543322110 12468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.|++|.|--......+.+++.+.
T Consensus 87 iDiLVNNAG~~~~~~~~~~~~e~ 109 (255)
T 4g81_D 87 VDILINNAGIQYRKPMVELELEN 109 (255)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHH
T ss_pred CcEEEECCCCCCCCChhhCCHHH
Confidence 99999998776666665555554
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.037 Score=50.74 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=34.5
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+|+ |.+++.+|+.++..+|+++|.++..++.++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 213 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 213 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 347899999875 888999999875449999999998887775
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.033 Score=46.31 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=58.5
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
++.+||-.|+ |.|.....+++.. +.+|+++|.+++.++.+++ .+.. . + .|..+....+.+........
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~g~~--~-~--~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----LGVE--Y-V--GDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----TCCS--E-E--EETTCSTHHHHHHHHTTTCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCC--E-E--eeCCcHHHHHHHHHHhCCCC
Confidence 3478999984 5677777777664 5799999999887766542 3432 1 1 23311111111111112346
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+|+++.|.. . ..++.+.+.|+++|.+++ ++
T Consensus 108 ~D~vi~~~g-----~----------------------------~~~~~~~~~l~~~G~~v~-~g 137 (198)
T 1pqw_A 108 VDVVLNSLA-----G----------------------------EAIQRGVQILAPGGRFIE-LG 137 (198)
T ss_dssp EEEEEECCC-----T----------------------------HHHHHHHHTEEEEEEEEE-CS
T ss_pred CeEEEECCc-----h----------------------------HHHHHHHHHhccCCEEEE-Ec
Confidence 999998631 0 245677889999998876 44
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.28 Score=45.87 Aligned_cols=44 Identities=14% Similarity=-0.083 Sum_probs=35.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCC-CCE----EEEEeCCHHHHHHHHHHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP-KLK----AIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~-~~~----v~~vDis~~al~~A~~n~~ 184 (322)
.+|+|++||.|.+...+...-. ..- |.++|+++.|.+.-+.|..
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 5899999999999998877510 122 7889999999998888874
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.077 Score=46.12 Aligned_cols=125 Identities=10% Similarity=0.106 Sum_probs=70.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++.+++.++...+.. ..++.++..|+.+....+.+.... ..++
T Consensus 9 k~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (255)
T 4eso_A 9 KKAIVIGG-THGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQTLGA 82 (255)
T ss_dssp CEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56776664 455555555543 3789999999988776655443 235889999995544332211100 1257
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.|++|.|.-+.....+..+..+.. +..... .+.-...+++.+...++++|.+++.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~--~~~~~~-----N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 83 IDLLHINAGVSELEPFDQVSEASY--DRQFAV-----NTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp EEEEEECCCCCCCBCGGGCCHHHH--HHHHHH-----HTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCChhhCCHHHH--HHHHHH-----hhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999987654433333333221 100000 0111234666777778888887763
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.096 Score=45.89 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=60.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.+|=-|.++| ++.++++.+ .+++|+.+|.+++.++.+.+.++..+ .++.++++|+.++...+.+... -..++
T Consensus 8 KvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 84 (254)
T 4fn4_A 8 KVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETYSR 84 (254)
T ss_dssp CEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56666665555 444444332 27899999999999988888887766 3588999999665544332110 01367
Q ss_pred eeEEEEcCCCC-CCCCCCCCChh
Q psy7093 217 FDLVVSNPPYV-PSLDIPKLEPE 238 (322)
Q Consensus 217 fDlIv~NPPy~-~~~~~~~l~~~ 238 (322)
.|++|.|--.. ....+.+++.+
T Consensus 85 iDiLVNNAGi~~~~~~~~~~~~e 107 (254)
T 4fn4_A 85 IDVLCNNAGIMDGVTPVAEVSDE 107 (254)
T ss_dssp CCEEEECCCCCCTTCCGGGCCHH
T ss_pred CCEEEECCcccCCCCChhhCCHH
Confidence 99999997643 22334444444
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.063 Score=49.54 Aligned_cols=97 Identities=14% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc--CcCCCC
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP--DLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~--~~~~~~ 216 (322)
+.+||=.|+|. |.+++.+|+..+..+|+++|.++..++.+++ +|... ++ |..+....+.+.. ....+.
T Consensus 183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~~---vi--~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGATA---TV--DPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCSE---EE--CTTSSCHHHHHHSTTSSSTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCCE---EE--CCCCcCHHHHHHhhhhccCCC
Confidence 47888888875 8889999998755599999999998887764 45431 12 1100000111111 012347
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+|+|+-.-. ....+..+.++|++||.+++
T Consensus 254 ~Dvvid~~G--------------------------------~~~~~~~~~~~l~~~G~vv~ 282 (370)
T 4ej6_A 254 VDVVIECAG--------------------------------VAETVKQSTRLAKAGGTVVI 282 (370)
T ss_dssp EEEEEECSC--------------------------------CHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEECCC--------------------------------CHHHHHHHHHHhccCCEEEE
Confidence 999987311 01456778889999999876
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.078 Score=48.42 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=34.2
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=+|+|. |.+++.+|+.....+|+++|.+++.++.+++
T Consensus 167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 47888889875 8888999988654489999999988887764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.21 Score=43.53 Aligned_cols=88 Identities=11% Similarity=0.150 Sum_probs=56.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+++|=.| |+|.++.++++.+ .+++|+.++.++..++.+.+.+...+...++.++..|+.++...+.+.. ..++.|
T Consensus 11 k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~g~id 87 (267)
T 3t4x_A 11 KTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE--KYPKVD 87 (267)
T ss_dssp CEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH--HCCCCS
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH--hcCCCC
Confidence 5566544 5566666665543 3689999999998887777666555433457888999855443322211 135789
Q ss_pred EEEEcCCCCCCCC
Q psy7093 219 LVVSNPPYVPSLD 231 (322)
Q Consensus 219 lIv~NPPy~~~~~ 231 (322)
++|.|.-......
T Consensus 88 ~lv~nAg~~~~~~ 100 (267)
T 3t4x_A 88 ILINNLGIFEPVE 100 (267)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEECCCCCCCCc
Confidence 9999987654443
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.21 Score=43.48 Aligned_cols=96 Identities=8% Similarity=0.000 Sum_probs=58.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|++ |.++.++++.+ .+++|+.++.+++.++.+...+....-..++.++.+|+.++.....+.... ..++
T Consensus 9 k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (265)
T 3lf2_A 9 AVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGC 87 (265)
T ss_dssp CEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 566666654 44555555433 278999999999888877766655221234889999996544332221100 1257
Q ss_pred eeEEEEcCCCCCCCCCCCCCh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEP 237 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~ 237 (322)
.|++|.|.-+.....+..+..
T Consensus 88 id~lvnnAg~~~~~~~~~~~~ 108 (265)
T 3lf2_A 88 ASILVNNAGQGRVSTFAETTD 108 (265)
T ss_dssp CSEEEECCCCCCCBCTTTCCH
T ss_pred CCEEEECCCCCCCCCcccCCH
Confidence 899999987655444444333
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.065 Score=48.68 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=61.3
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+||-.|+|. |.+++.+|+.. +++|+++|.+++.++.+++ +|.. . ++..+- +...+.+.. ..+.+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~--~-~i~~~~--~~~~~~~~~--~~g~~ 233 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----LGAE--V-AVNARD--TDPAAWLQK--EIGGA 233 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCS--E-EEETTT--SCHHHHHHH--HHSSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----cCCC--E-EEeCCC--cCHHHHHHH--hCCCC
Confidence 347888899875 89999999986 5699999999998887753 4543 1 222111 000111111 12378
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+|+-+-. -...++.+.+.|+++|.+++
T Consensus 234 d~vid~~g--------------------------------~~~~~~~~~~~l~~~G~iv~ 261 (340)
T 3s2e_A 234 HGVLVTAV--------------------------------SPKAFSQAIGMVRRGGTIAL 261 (340)
T ss_dssp EEEEESSC--------------------------------CHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEeCC--------------------------------CHHHHHHHHHHhccCCEEEE
Confidence 99887421 01466778889999999876
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.054 Score=49.33 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=62.9
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc--cCCCcccccccCcCcCCC
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA--EIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~--D~~~~~~~~~l~~~~~~~ 215 (322)
++.+||=.|+|. |.+++.+|+...+.+|+++|.+++.++.+++ +|... ++.. |+ .+.+.......
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~-----~~~v~~~t~g~ 238 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGADA---AVKSGAGA-----ADAIRELTGGQ 238 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCSE---EEECSTTH-----HHHHHHHHGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCE---EEcCCCcH-----HHHHHHHhCCC
Confidence 347888889875 8889999988767899999999998887753 55431 2211 11 11111111223
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.+|+|+-.-. . ...+..+.+.|+++|.+++
T Consensus 239 g~d~v~d~~G-----~---------------------------~~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 239 GATAVFDFVG-----A---------------------------QSTIDTAQQVVAVDGHISV 268 (345)
T ss_dssp CEEEEEESSC-----C---------------------------HHHHHHHHHHEEEEEEEEE
T ss_pred CCeEEEECCC-----C---------------------------HHHHHHHHHHHhcCCEEEE
Confidence 7999987321 0 1367778889999999876
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.21 Score=44.97 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=58.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.|+ +|.++.++++.+ .+.+|++++.++..++.+...+...+...++.++..|+.+......+.... ..+.
T Consensus 9 k~vlVTGa-s~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (319)
T 3ioy_A 9 RTAFVTGG-ANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGP 87 (319)
T ss_dssp CEEEEETT-TSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEcCC-chHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 56766654 455565555543 368999999999988887777766554346999999996554332221100 1257
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|.-+.....
T Consensus 88 id~lv~nAg~~~~~~ 102 (319)
T 3ioy_A 88 VSILCNNAGVNLFQP 102 (319)
T ss_dssp EEEEEECCCCCCCCC
T ss_pred CCEEEECCCcCCCCC
Confidence 899999987654433
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.12 Score=44.92 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=55.2
Q ss_pred CeEEEEcC-chh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 141 TRMIEIGS-GTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~-GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++|=.|+ |+| .++..++++ +.+|+.++.+...++.+.+.+...+ ..++.++.+|+.+....+.+.... ..
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEKA 99 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 56776665 333 233444444 7899999999988877776665443 346999999996544332221100 12
Q ss_pred CCeeEEEEcCCCCCCCC
Q psy7093 215 QKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~ 231 (322)
++.|++|.|.-+.....
T Consensus 100 g~id~li~~Ag~~~~~~ 116 (266)
T 3o38_A 100 GRLDVLVNNAGLGGQTP 116 (266)
T ss_dssp SCCCEEEECCCCCCCCC
T ss_pred CCCcEEEECCCcCCCCC
Confidence 47899999987654443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=93.49 E-value=0.58 Score=42.56 Aligned_cols=60 Identities=17% Similarity=0.385 Sum_probs=47.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCcEEEEEccCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--------------------VANQLQVFHAEID 200 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--------------------l~~~i~~~~~D~~ 200 (322)
..|+.||||.......+....++..++-+|. |+.++.-++.+...+ ...+..++..|++
T Consensus 99 ~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~ 177 (334)
T 1rjd_A 99 VQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 177 (334)
T ss_dssp EEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred cEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence 6899999999999999988767778888888 777777766665531 1357899999995
Q ss_pred C
Q psy7093 201 S 201 (322)
Q Consensus 201 ~ 201 (322)
+
T Consensus 178 d 178 (334)
T 1rjd_A 178 D 178 (334)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.081 Score=49.17 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=35.0
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+|. |.+++.+|+.++..+|+++|.+++.++.++
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 227 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH
Confidence 347899999875 889999999875558999999999888875
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.14 Score=45.14 Aligned_cols=83 Identities=10% Similarity=0.098 Sum_probs=51.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+++|+.++. +++.++.....+...+ .++.++.+|+.++...+.+.... ..+
T Consensus 30 k~~lVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 106 (280)
T 4da9_A 30 PVAIVTG-GRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAEFG 106 (280)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5566555 4555555555443 3789999995 7777766666665554 35899999996544332221100 124
Q ss_pred CeeEEEEcCCC
Q psy7093 216 KFDLVVSNPPY 226 (322)
Q Consensus 216 ~fDlIv~NPPy 226 (322)
+.|++|.|.-.
T Consensus 107 ~iD~lvnnAg~ 117 (280)
T 4da9_A 107 RIDCLVNNAGI 117 (280)
T ss_dssp CCCEEEEECC-
T ss_pred CCCEEEECCCc
Confidence 78999999865
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.12 Score=47.02 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=33.4
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+|. |.+++.+|+.+ +++|+++|.+++.++.++
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~ 209 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAK 209 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH
Confidence 347899999874 78888888886 567999999999888775
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.074 Score=49.20 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+| .|.+++.+|+.....+|++++.+++.++.++
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 237 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 237 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence 34789999866 5788888998864369999999998888775
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=93.02 E-value=0.26 Score=43.01 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=71.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+++|+.++. +...++...+.+...+ .++.++.+|+.++.....+.... ..+
T Consensus 19 k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 95 (270)
T 3is3_A 19 KVALVTG-SGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAHFG 95 (270)
T ss_dssp CEEEESC-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5666555 4555655555543 3688988775 4555665555555544 45899999996544332221100 124
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.|++|.|.-......+..+..+.. +..... .+.-...+++.+...++++|.+++.
T Consensus 96 ~id~lvnnAg~~~~~~~~~~~~~~~--~~~~~~-----N~~g~~~~~~~~~~~~~~~g~iv~i 151 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGHLKDVTEEEF--DRVFSL-----NTRGQFFVAREAYRHLTEGGRIVLT 151 (270)
T ss_dssp CCCEEECCCCCCCCCCGGGCCHHHH--HHHHHH-----HTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCEEEECCCCCCCCCcccCCHHHH--HHHHHH-----HhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 7899999987655444333333221 100000 0111235566777778888887764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.16 Score=45.27 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=56.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|++ |.++.++++.+ .+.+|+.++.++..++.+.+.+...+ .++.++..|+.+....+.+.... ..++
T Consensus 32 k~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 32 RAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 567766554 55555555543 36899999999998888777766554 35899999996544332211100 1247
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|.-+.....
T Consensus 109 id~lvnnAg~~~~~~ 123 (301)
T 3tjr_A 109 VDVVFSNAGIVVAGP 123 (301)
T ss_dssp CSEEEECCCCCCCBC
T ss_pred CCEEEECCCcCCCCC
Confidence 899999987654433
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=1.4 Score=43.89 Aligned_cols=125 Identities=19% Similarity=0.312 Sum_probs=76.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC-------C-----CCEEEEEeC---CHHHHHHHHH-----------HHHHcCC--C---
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-------P-----KLKAIAIDQ---SKHACDLTEQ-----------NAVMHNV--A--- 189 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-------~-----~~~v~~vDi---s~~al~~A~~-----------n~~~~~l--~--- 189 (322)
.+|+|+|-|+|.-.++....+ | ..+++++|. +.+-+..+-. -...+.. .
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 689999999997766665542 1 246899998 7776663322 1111110 0
Q ss_pred --------CcEEEEEccCCCcccccccCcC--cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH
Q psy7093 190 --------NQLQVFHAEIDSKGQVKNLQPD--LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259 (322)
Q Consensus 190 --------~~i~~~~~D~~~~~~~~~l~~~--~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~ 259 (322)
-++++..+|+ .+.++.. .....||+++.++ |.+... ++. |. .
T Consensus 148 ~~~~~~~~~~l~l~~gd~-----~~~l~~~~~~~~~~~d~~~~D~-f~p~~n-----p~~--w~---------------~ 199 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDI-----NELTSQLDDSLNQKVDAWFLDG-FAPAKN-----PDM--WT---------------Q 199 (676)
T ss_dssp EEEEGGGTEEEEEEESCH-----HHHGGGBCGGGTTCEEEEEECC-SCGGGC-----GGG--SC---------------H
T ss_pred EEEecCCcEEEEEecCCH-----HHHHHhcccccCCcccEEEECC-CCCcCC-----hhh--hh---------------H
Confidence 1245667776 4434321 0136799999986 333222 121 11 2
Q ss_pred HHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 260 PICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 260 ~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
.++..+.++++|||.+.- +.....+++.+.+.|+
T Consensus 200 ~~~~~l~~~~~~g~~~~t---~~~~~~vr~~L~~aGf 233 (676)
T 3ps9_A 200 NLFNAMARLARPGGTLAT---FTSAGFVRRGLQDAGF 233 (676)
T ss_dssp HHHHHHHHHEEEEEEEEE---SCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCEEEe---ccCcHHHHHHHHhCCe
Confidence 677888899999998764 3444678888888873
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.27 Score=42.63 Aligned_cols=128 Identities=9% Similarity=0.069 Sum_probs=70.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAI-DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~v-Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|++ |.++.++++.+ .+++|+.+ +.+.+..+.+...+...+ .++.++.+|+.+....+.+.... ..+
T Consensus 9 k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (259)
T 3edm_A 9 RTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADKFG 85 (259)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 567766654 44555555433 26788888 667766666665555444 45889999996544332221100 125
Q ss_pred CeeEEEEcCCCC-CCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYV-PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~-~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.|++|.|.-.. ....+..+..+.. +..... .+.-...+++.+...++++|.+++.
T Consensus 86 ~id~lv~nAg~~~~~~~~~~~~~~~~--~~~~~v-----N~~g~~~~~~~~~~~~~~~g~iv~i 142 (259)
T 3edm_A 86 EIHGLVHVAGGLIARKTIAEMDEAFW--HQVLDV-----NLTSLFLTAKTALPKMAKGGAIVTF 142 (259)
T ss_dssp SEEEEEECCCCCCCCCCTTTCCHHHH--HHHHHH-----HTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCEEEECCCccCCCCChhhCCHHHH--HHHHHH-----HHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 799999997543 3333333333221 100000 0111235666777777778877663
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.27 Score=51.19 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=56.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc------cc-ccccC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKL--KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK------GQ-VKNLQ 209 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~------~~-~~~l~ 209 (322)
...+++|++||.|.+++.+... +. .+.++|+++.|.+.-+.|.. ...++..|+.+- ++ .....
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~A--G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~~ 610 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQA--GISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSRG 610 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHH--TSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTTC
T ss_pred CCCeEEEeccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhhh
Confidence 3468999999999999998877 54 57799999999988877742 245566664110 00 01011
Q ss_pred cCc-CCCCeeEEEEcCCCCCCCC
Q psy7093 210 PDL-LEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 210 ~~~-~~~~fDlIv~NPPy~~~~~ 231 (322)
..+ ..+.+|+|+.-||.-....
T Consensus 611 ~~lp~~~~vDll~GGpPCQ~FS~ 633 (1002)
T 3swr_A 611 QRLPQKGDVEMLCGGPPCQGFSG 633 (1002)
T ss_dssp CBCCCTTTCSEEEECCCCTTCCS
T ss_pred hhcccCCCeeEEEEcCCCcchhh
Confidence 111 2357999999999766554
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.29 Score=42.41 Aligned_cols=129 Identities=9% Similarity=0.060 Sum_probs=69.2
Q ss_pred CeEEEEcCch--h---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSGT--G---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~Gs--G---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
+++|=.|+++ | .++..+++. +.+|+.++.++...+.+.+-....+ ..++.++.+|+.++...+.+.... .
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 5677777552 2 234444444 7899999988765555555444443 226899999996544332221100 1
Q ss_pred CCCeeEEEEcCCCCCC----CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 214 EQKFDLVVSNPPYVPS----LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~~----~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.++.|++|.|..+... ........+. ++.... -.+.-...+++.+...++++|.+++..
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~--~~~~~~-----~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 85 VGVIHGIAHCIAFANKEELVGEYLNTNRDG--FLLAHN-----ISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp HSCCCEEEECCCCCCGGGGSSCGGGCCHHH--HHHHHH-----HHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred hCCeeEEEEccccccccccccchhhccHHH--HHHHHH-----HhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 2478999999766541 1111111111 000000 000112346677788888888877743
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.49 E-value=0.4 Score=41.43 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
++|| +-.|+|.++.++++.+ .+.+|++++. ++..++.....+...+ .++.++.+|+.++.....+.... ..+
T Consensus 22 k~vl-ItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 98 (274)
T 1ja9_A 22 KVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHFG 98 (274)
T ss_dssp CEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5666 4556777777777654 3678999998 7777666555555444 35889999996544332211000 124
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
..|++|.|..+..
T Consensus 99 ~~d~vi~~Ag~~~ 111 (274)
T 1ja9_A 99 GLDFVMSNSGMEV 111 (274)
T ss_dssp CEEEEECCCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7899999876544
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.5 Score=41.29 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=70.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS------------KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis------------~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+++|=-|+ +|.++.++++.+ .+++|+.+|.+ ...++.+...+...+ .++.++..|+.+.....
T Consensus 11 k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~ 87 (287)
T 3pxx_A 11 KVVLVTGG-ARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAAVS 87 (287)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHH
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHHHH
Confidence 56665554 455555555443 37899999987 666666666665554 45899999996544332
Q ss_pred ccCcCc--CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 207 NLQPDL--LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 207 ~l~~~~--~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.+.... ..++.|++|.|.-+.... .. +..+. ++..... .+.-...+++.+...++.+|.+++
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~-~~-~~~~~--~~~~~~~-----N~~g~~~l~~~~~~~~~~~g~iv~ 151 (287)
T 3pxx_A 88 RELANAVAEFGKLDVVVANAGICPLG-AH-LPVQA--FADAFDV-----DFVGVINTVHAALPYLTSGASIIT 151 (287)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCC-TT-CCTHH--HHHHHHH-----HTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCcCccc-Cc-CCHHH--HHHHhhh-----hhhhhHHHHHHHHHHhhcCcEEEE
Confidence 211100 124789999998765433 11 11111 1110000 011123566777788888888766
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.034 Score=63.62 Aligned_cols=102 Identities=17% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-----KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-----~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
..+||++|.|+|..+..+...+. ..+++.+|+|+...+.|++.++... +..-..|. .+. ..+..
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~-----~~~--~~~~~ 1309 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDP-----ANP--APGSL 1309 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCS-----SCC--CC---
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccc-----ccc--ccCCC
Confidence 36899999999987666655543 2478899999888877777665432 32222232 110 01124
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
..||+||+.-..+...+ ....+.++.++|||||++++.
T Consensus 1310 ~~ydlvia~~vl~~t~~--------------------------~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1310 GKADLLVCNCALATLGD--------------------------PAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp --CCEEEEECC----------------------------------------------CCEEEEE
T ss_pred CceeEEEEccccccccc--------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 57999998533322221 235677888999999998774
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.22 Score=45.55 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=35.0
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+.+||=.|+|. |.+++.+|+..+...|+++|.+++.++.+++.
T Consensus 180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 46788888875 88899999987544599999999999988753
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.76 Score=40.55 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=55.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
+++|=.| |+|.++.++++.+ ...+|+.++.+.+.++.+.+.+....-..++.++.+|+.++...+.+.... .
T Consensus 34 k~~lVTG-as~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 112 (287)
T 3rku_A 34 KTVLITG-ASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQE 112 (287)
T ss_dssp CEEEEES-TTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGG
T ss_pred CEEEEec-CCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5677666 4556666666543 223999999999988877776655432346889999996655433221111 1
Q ss_pred CCCeeEEEEcCCCC
Q psy7093 214 EQKFDLVVSNPPYV 227 (322)
Q Consensus 214 ~~~fDlIv~NPPy~ 227 (322)
.++.|++|.|.-..
T Consensus 113 ~g~iD~lVnnAG~~ 126 (287)
T 3rku_A 113 FKDIDILVNNAGKA 126 (287)
T ss_dssp GCSCCEEEECCCCC
T ss_pred cCCCCEEEECCCcC
Confidence 25799999997654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.33 E-value=0.41 Score=41.78 Aligned_cols=87 Identities=13% Similarity=0.141 Sum_probs=54.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC-C
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE-Q 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~-~ 215 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.+++.++.+.+.+...+ .++.++.+|+.++...+.+.... .. +
T Consensus 22 k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 98 (273)
T 1ae1_A 22 TTALVTG-GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVFDG 98 (273)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5666665 4566665555543 36899999999887776655555443 35888999996544332211100 11 6
Q ss_pred CeeEEEEcCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSL 230 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~ 230 (322)
+.|++|.|.......
T Consensus 99 ~id~lv~nAg~~~~~ 113 (273)
T 1ae1_A 99 KLNILVNNAGVVIHK 113 (273)
T ss_dssp CCCEEEECCCCCCCC
T ss_pred CCcEEEECCCCCCCC
Confidence 789999998765433
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.28 Score=45.01 Aligned_cols=95 Identities=15% Similarity=0.235 Sum_probs=61.4
Q ss_pred CCeEEEEc-C-chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIG-S-GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg-~-GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+||=.| + |.|.+++.+|+.+.+++|+++|.+++.++.+++ +|.. .++ |..++ ..+.+.. ...+.+
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi--~~~~~-~~~~v~~-~~~~g~ 240 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVI--DHSKP-LAAEVAA-LGLGAP 240 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEE--CTTSC-HHHHHHT-TCSCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEE--eCCCC-HHHHHHH-hcCCCc
Confidence 35788887 4 468999999987567899999999988888753 5543 112 11000 0111111 234579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+|+-+-. -...+..+.++|+++|.+++
T Consensus 241 Dvvid~~g--------------------------------~~~~~~~~~~~l~~~G~iv~ 268 (363)
T 4dvj_A 241 AFVFSTTH--------------------------------TDKHAAEIADLIAPQGRFCL 268 (363)
T ss_dssp EEEEECSC--------------------------------HHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEECCC--------------------------------chhhHHHHHHHhcCCCEEEE
Confidence 99887311 11466778899999999876
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.27 Score=42.93 Aligned_cols=92 Identities=10% Similarity=0.142 Sum_probs=57.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+...+ .++.++.+|+.++...+.+.... ..++
T Consensus 5 k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 5 KVILITG-ASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555544 4555665555543 37899999999988887777666554 35888999996544332221100 1257
Q ss_pred eeEEEEcCCCCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDIPKL 235 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l 235 (322)
.|++|.|.-+.....+..+
T Consensus 82 iD~lVnnAG~~~~~~~~~~ 100 (264)
T 3tfo_A 82 IDVLVNNAGVMPLSPLAAV 100 (264)
T ss_dssp CCEEEECCCCCCCCCGGGC
T ss_pred CCEEEECCCCCCCCCcccC
Confidence 8999999876554443333
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.31 Score=42.67 Aligned_cols=93 Identities=8% Similarity=0.011 Sum_probs=58.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|= -.|+|.++.++++.+ .+++|++++.++..++.....+...+. ++.++..|+.+....+.+.... ..++
T Consensus 29 k~~lV-TGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (270)
T 3ftp_A 29 QVAIV-TGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEFGA 105 (270)
T ss_dssp CEEEE-TTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 45554 445666666665543 378999999999888877777666553 4788899996544332221100 1247
Q ss_pred eeEEEEcCCCCCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~ 236 (322)
.|++|.|.-+........+.
T Consensus 106 iD~lvnnAg~~~~~~~~~~~ 125 (270)
T 3ftp_A 106 LNVLVNNAGITQDQLAMRMK 125 (270)
T ss_dssp CCEEEECCCCCCCBCTTTCC
T ss_pred CCEEEECCCCCCCCCcccCC
Confidence 89999998765544333333
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.54 Score=41.62 Aligned_cols=126 Identities=11% Similarity=0.068 Sum_probs=68.9
Q ss_pred CeEEEEcCchh-----HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSGTG-----AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~GsG-----~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
+++|=.|+++| .++..+++. +++|+.++.++...+.+++-....+ ++.++.+|+.+....+.+.... .
T Consensus 32 k~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 32 KRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp CEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHh
Confidence 67887776533 334444444 7899999999766655555444443 4888999996554332221100 1
Q ss_pred CCCeeEEEEcCCCCC----CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 214 EQKFDLVVSNPPYVP----SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~----~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.++.|++|.|.-+.. ...+.....+. ++-... -.+.-...+++.+...++++|.+++.
T Consensus 107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~--~~~~~~-----~N~~g~~~l~~~~~~~m~~~g~Iv~i 168 (293)
T 3grk_A 107 WGKLDFLVHAIGFSDKDELTGRYIDTSEAN--FTNTML-----ISVYSLTAVSRRAEKLMADGGSILTL 168 (293)
T ss_dssp TSCCSEEEECCCCCCHHHHTSCGGGCCHHH--HHHHHH-----HHTHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEECCccCCcccccccccccCHHH--HHHHHH-----HHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 257899999976543 12222222211 000000 00111235566677777778887764
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.32 Score=43.99 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=33.1
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||=+|+|+ |.+++.+++...+.+|+++|.+++.++.++
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~ 205 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK 205 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh
Confidence 347888899886 466777777777899999999998777665
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.19 Score=46.24 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=34.4
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-+|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 347899999875 88888899886 5689999999988887764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.51 Score=41.27 Aligned_cols=128 Identities=9% Similarity=0.039 Sum_probs=70.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS-KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis-~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|++ |.++.++++.+ .+++|+.++.+ ...++.....+...+ .++.++.+|+.++...+.+-... ..+
T Consensus 32 k~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (271)
T 3v2g_A 32 KTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEALG 108 (271)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567766654 45555555433 37889888654 455555555555444 35889999996544332211100 124
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.|++|.|.-+.....+..+..+.. +..... .+.-...+++.+...++++|.+++.
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~--~~~~~v-----N~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 109 GLDILVNSAGIWHSAPLEETTVADF--DEVMAV-----NFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHH--HHHHHH-----HTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCcEEEECCCCCCCCChhhCCHHHH--HHHHHH-----HhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 7899999987655443333332221 110000 0111235666777778888887764
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.11 Score=47.31 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=33.4
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-+|+| .|..++.+|+..+..+|+++|.+++.++.++
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~ 209 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK 209 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34789999986 4788888888864338999999998887776
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.34 Score=41.90 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=55.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+++|+.+|.++..++.+...+...+ .++.++.+|+.++...+.+.... ..++
T Consensus 13 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 89 (256)
T 3gaf_A 13 AVAIVTG-AAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQFGK 89 (256)
T ss_dssp CEEEECS-CSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5566555 4555555555433 26899999999988887777666554 45899999996544332211100 1247
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|.-+....
T Consensus 90 id~lv~nAg~~~~~ 103 (256)
T 3gaf_A 90 ITVLVNNAGGGGPK 103 (256)
T ss_dssp CCEEEECCCCCCCC
T ss_pred CCEEEECCCCCCCC
Confidence 89999998765443
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.13 Score=46.76 Aligned_cols=43 Identities=16% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCCeEEEEcCc--hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG--TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G--sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-.|+| .|..++.+++..++++|+++|.+++.++.+++
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~ 214 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 214 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34789999987 56777777777535799999999988887753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.14 Score=46.57 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=34.0
Q ss_pred CCeEEEEcCch-hHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHF-PKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~-~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||-+|+|. |.+++.+|+.. |+++|+++|.+++.++.+++
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~ 214 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE 214 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence 47899999864 78888888875 35789999999998887764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.63 Score=41.21 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=53.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS------------KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis------------~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+++|=.|+++ .++.++++.+ .+++|+.+|.+ ++.++.+...+...+ .++.++..|+.++...+
T Consensus 29 k~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 29 KVAFITGAAR-GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp CEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHH
T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHH
Confidence 5676666554 4555554432 37899999987 666666665555554 45899999996544332
Q ss_pred ccCcCc--CCCCeeEEEEcCCCCCC
Q psy7093 207 NLQPDL--LEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 207 ~l~~~~--~~~~fDlIv~NPPy~~~ 229 (322)
.+.... ..++.|++|.|.-+...
T Consensus 106 ~~~~~~~~~~g~iD~lv~nAg~~~~ 130 (299)
T 3t7c_A 106 AAVDDGVTQLGRLDIVLANAALASE 130 (299)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCC
Confidence 221100 12578999999876543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.083 Score=47.99 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=34.2
Q ss_pred CCCeEEEEcCc--hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG--TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G--sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-.|+| .|..++.+++.. +++|+++|.+++.++.+++
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR 187 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh
Confidence 34789999886 678888888875 5699999999988887764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.68 E-value=0.51 Score=40.92 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=54.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+++ .++.++++.+ .+.+|+.++.+++.++.+...+...+ .++.++.+|+.++...+.+... -..++
T Consensus 12 k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 88 (264)
T 3ucx_A 12 KVVVISGVGP-ALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAYGR 88 (264)
T ss_dssp CEEEEESCCT-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred cEEEEECCCc-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5677666554 4444444432 27899999999998887777766554 4589999999665433222110 01357
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|++|.|.-.
T Consensus 89 id~lv~nAg~ 98 (264)
T 3ucx_A 89 VDVVINNAFR 98 (264)
T ss_dssp CSEEEECCCS
T ss_pred CcEEEECCCC
Confidence 8999999754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.3 Score=42.45 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=56.1
Q ss_pred CCeEEEEcCch----h-HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--c
Q psy7093 140 PTRMIEIGSGT----G-AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--L 212 (322)
Q Consensus 140 ~~~iLDlg~Gs----G-~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~ 212 (322)
++++|=-|+++ | .++..++++ +++|+.++.+++.++.+.+-+...+- .++.+++.|+.++.....+... -
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36777777533 3 344555555 78999999998888877776665542 3588899999665433222110 0
Q ss_pred CCCCeeEEEEcCCCCC
Q psy7093 213 LEQKFDLVVSNPPYVP 228 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~ 228 (322)
..++.|++|.|..+..
T Consensus 83 ~~G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFAN 98 (256)
T ss_dssp HHCCCSEEEECCCCCC
T ss_pred HhCCCCEEEecccccc
Confidence 1367999999976543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.6 Score=39.49 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=58.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAV-MHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~-~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+.+.++.+...+. ..+ .++.++.+|+.++.....+.... ..+
T Consensus 3 k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 3 KVAVITG-ASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 4566555 4566666666543 36789999999988777666554 333 35899999996655433322110 114
Q ss_pred CeeEEEEcCCCCCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~ 236 (322)
+.|++|.|.-......+..+.
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~ 100 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELS 100 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSC
T ss_pred CCCEEEECCccccccCcccCC
Confidence 789999998765544444333
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.13 Score=47.20 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.|+|. |..++.+|+.. +++|+++|.++..++.+++
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH
Confidence 347899999875 88888888886 5699999999988887753
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=2.4 Score=37.98 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=70.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccCCCcccccccCc-CcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV--ANQLQVFHAEIDSKGQVKNLQP-DLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~~~~~~~~l~~-~~~~~~f 217 (322)
..|++||||-=.....+.. -++..++=+| .|..++..++-+...+. ..+..++..|+++ .-.+.+.. .+.....
T Consensus 104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 5799999998777555442 1247899999 58898888887765442 4568899999844 11111110 1112233
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
-++++. .-...++++. ...+++.+...+.||+.++++....
T Consensus 181 t~~i~E------gvl~Yl~~~~------------------~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 181 TAWLAE------GLLMYLPATA------------------QDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp EEEEEC------SCGGGSCHHH------------------HHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEEEe------chHhhCCHHH------------------HHHHHHHHHHhCCCCeEEEEEecCC
Confidence 344442 1122222221 4578888888888999999997543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.25 Score=44.48 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=31.9
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLT 179 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A 179 (322)
++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~ 186 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYL 186 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH
Confidence 3478999997 6777777777775 56999999998887776
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.56 E-value=0.36 Score=41.99 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=55.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=-| |+|.++.++++.+ .+++|+.++.++..++.+...+.. .+ .++.++..|+.++...+.+.... ..+
T Consensus 21 k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 97 (266)
T 4egf_A 21 KRALITG-ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAEAFG 97 (266)
T ss_dssp CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4555444 5566666665543 368999999999888777666544 33 35899999995544322211100 124
Q ss_pred CeeEEEEcCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLD 231 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~ 231 (322)
+.|++|.|.-......
T Consensus 98 ~id~lv~nAg~~~~~~ 113 (266)
T 4egf_A 98 GLDVLVNNAGISHPQP 113 (266)
T ss_dssp SCSEEEEECCCCCCCC
T ss_pred CCCEEEECCCcCCCCC
Confidence 7899999987654443
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.39 Score=42.23 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=53.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+++|+.+|.+++.++.+...+ + .++.++..|+.++.....+.... ..++
T Consensus 30 k~vlVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 30 KVAIVTG-AGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G--CGAAACRVDVSDEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp CEEEETT-TTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C--SSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5566555 4555555555433 3789999999988776655443 3 35888999996544332211100 1247
Q ss_pred eeEEEEcCCCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDIPK 234 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~ 234 (322)
.|++|.|.-+.....+..
T Consensus 104 iD~lvnnAg~~~~~~~~~ 121 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLID 121 (277)
T ss_dssp CCEEEECCCCCCCBCTTT
T ss_pred CCEEEECCCCCCCCChhh
Confidence 899999987654443333
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.39 Score=41.39 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=71.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
++|| +-.|+|.++..+++.+ .+.+|++++.++..++.+.+.+...+ .++.++.+|+.+......+.... ..+
T Consensus 5 k~vl-ITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 5 HVAL-VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CEEE-ESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEE-EeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4566 5557787877777654 36799999999887776666665544 35889999995543322211000 124
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
++|+||.|.-....... .... ...++-... ..+.-...+++.+...++++|.+++
T Consensus 82 ~id~li~~Ag~~~~~~~-~~~~-~~~~~~~~~-----~N~~g~~~l~~~~~~~~~~~g~iv~ 136 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVAD-PTPF-HIQAEVTMK-----TNFFGTRDVCTELLPLIKPQGRVVN 136 (276)
T ss_dssp SEEEEEECCCCCCCTTC-CSCH-HHHHHHHHH-----HHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCEEEECCcccccCCC-cccc-HHHHHhhhh-----eeeeeHHHHHHHHHHhhCCCCEEEE
Confidence 79999998764432211 1110 000110000 0011134566777777777787766
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.53 Score=41.65 Aligned_cols=128 Identities=10% Similarity=0.045 Sum_probs=69.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS--KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis--~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+ ....+.....+...+ .++.++.+|+.++...+.+.... ..
T Consensus 50 k~vlVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 126 (294)
T 3r3s_A 50 RKALVTG-GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAREAL 126 (294)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 5666666 4555665555543 36899999986 344444444444444 45889999996544332211100 12
Q ss_pred CCeeEEEEcCCCCC-CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 215 QKFDLVVSNPPYVP-SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 215 ~~fDlIv~NPPy~~-~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
++.|++|.|.-... ...+..+..+.. +..... .+.-...+++.+...++++|.+++.
T Consensus 127 g~iD~lv~nAg~~~~~~~~~~~~~~~~--~~~~~v-----N~~g~~~l~~~~~~~~~~~g~Iv~i 184 (294)
T 3r3s_A 127 GGLDILALVAGKQTAIPEIKDLTSEQF--QQTFAV-----NVFALFWITQEAIPLLPKGASIITT 184 (294)
T ss_dssp TCCCEEEECCCCCCCCSSGGGCCHHHH--HHHHHH-----HTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHH--HHHHHH-----HhHHHHHHHHHHHHHhhcCCEEEEE
Confidence 57899999976533 222222222211 100000 0111235677778888888987763
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.8 Score=41.48 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-.|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS 218 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh
Confidence 347899899875 88889999886 5699999999988887753
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.48 Score=41.50 Aligned_cols=85 Identities=7% Similarity=0.044 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+ +|.++.++++.+ .+++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.++.....+.... ..+
T Consensus 12 k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 90 (281)
T 3svt_A 12 RTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWHG 90 (281)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 56666654 555555555543 3789999999998888777776655432 26889999996544332221100 125
Q ss_pred CeeEEEEcCCC
Q psy7093 216 KFDLVVSNPPY 226 (322)
Q Consensus 216 ~fDlIv~NPPy 226 (322)
+.|++|.|.-.
T Consensus 91 ~id~lv~nAg~ 101 (281)
T 3svt_A 91 RLHGVVHCAGG 101 (281)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 78999999764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.35 Score=42.23 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=68.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID-QSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD-is~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|++ |.++.++++.+ .+.+|+.++ .+...++.....+...+ .++.++..|+.++...+.+.... ..+
T Consensus 28 k~~lVTGas-~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 104 (267)
T 3u5t_A 28 KVAIVTGAS-RGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAFG 104 (267)
T ss_dssp CEEEEESCS-SHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 566666654 44444444432 267888774 45555655555555544 35889999996544332221100 125
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.|++|.|.-+...........+.. +..... .+.-...+++.+...++++|.+++.
T Consensus 105 ~iD~lvnnAG~~~~~~~~~~~~~~~--~~~~~v-----N~~g~~~~~~~~~~~~~~~g~iv~i 160 (267)
T 3u5t_A 105 GVDVLVNNAGIMPLTTIAETGDAVF--DRVIAV-----NLKGTFNTLREAAQRLRVGGRIINM 160 (267)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHH--HHHHHH-----HHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECCCCCCCCChhhCCHHHH--HHHHHH-----HHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 7999999987655444333333211 100000 0111234566666777778887763
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.15 Score=45.91 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=33.4
Q ss_pred CCCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.| .|.|..++.+++.. +++|++++.+++.++.+++
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~ 183 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA 183 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 347899887 35788888888875 5699999999998887763
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.15 Score=46.08 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=33.5
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.|+ |.|..++.+++.. +++|++++.+++.++.+++
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~ 191 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKE 191 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 4478999983 5788888888875 5699999999988887753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.32 Score=45.22 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=34.6
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.|+|. |.+++.+|+..+..+|+++|.++..++.+++
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~ 256 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE 256 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 446888888864 7888889988755599999999998888763
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.32 E-value=0.42 Score=41.86 Aligned_cols=88 Identities=16% Similarity=0.071 Sum_probs=54.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-------------CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-------------SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-------------s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
+++|=.|+ +|.++.++++.+ .+++|+.+|. +++.++.+.+.+...+ .++.++..|+.++...
T Consensus 16 k~~lVTGa-s~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v 92 (280)
T 3pgx_A 16 RVAFITGA-ARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDDAAL 92 (280)
T ss_dssp CEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHH
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHH
Confidence 56665554 455555555443 3789999998 6777766666555444 4588999999654433
Q ss_pred cccCcCc--CCCCeeEEEEcCCCCCCCC
Q psy7093 206 KNLQPDL--LEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 206 ~~l~~~~--~~~~fDlIv~NPPy~~~~~ 231 (322)
+.+-... ..++.|++|.|.-......
T Consensus 93 ~~~~~~~~~~~g~id~lvnnAg~~~~~~ 120 (280)
T 3pgx_A 93 RELVADGMEQFGRLDVVVANAGVLSWGR 120 (280)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCCBC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 2221100 1257899999987654433
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.94 Score=38.94 Aligned_cols=86 Identities=9% Similarity=0.161 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc---
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--- 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--- 212 (322)
+++| +-.|+|.++.++++.+ .+.+|+.++.+++.++.+...+.......++.++..|+.++...+.+....
T Consensus 7 k~~l-VTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (259)
T 1oaa_A 7 AVCV-LTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVREL 85 (259)
T ss_dssp EEEE-ESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHHS
T ss_pred cEEE-EeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhc
Confidence 3455 4456667777776654 378999999999887766665544321245889999996654332221111
Q ss_pred -CCCCee--EEEEcCCCC
Q psy7093 213 -LEQKFD--LVVSNPPYV 227 (322)
Q Consensus 213 -~~~~fD--lIv~NPPy~ 227 (322)
..+++| ++|.|.-+.
T Consensus 86 ~~~g~~d~~~lvnnAg~~ 103 (259)
T 1oaa_A 86 PRPEGLQRLLLINNAATL 103 (259)
T ss_dssp CCCTTCCEEEEEECCCCC
T ss_pred cccccCCccEEEECCccc
Confidence 224677 999987653
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.59 Score=41.27 Aligned_cols=128 Identities=10% Similarity=0.066 Sum_probs=68.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKH-ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~-al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++.+.. ..+.+.+-....+ .++.++.+|+.++...+.+.... ..+
T Consensus 48 k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 124 (291)
T 3ijr_A 48 KNVLITGG-DSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQLG 124 (291)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56666664 555555555543 3689999998765 3344443334333 45899999996544332211100 124
Q ss_pred CeeEEEEcCCCCCC-CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPS-LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~-~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.|++|.|.-.... ..+..+..+.. +-... -.+.-...+++.+...++++|.+++.
T Consensus 125 ~iD~lvnnAg~~~~~~~~~~~~~~~~--~~~~~-----vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 125 SLNILVNNVAQQYPQQGLEYITAEQL--EKTFR-----INIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp SCCEEEECCCCCCCCSSGGGCCHHHH--HHHHH-----HHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHH--HHHHH-----HHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 78999999654322 22222222211 10000 00111345677778888888887663
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.24 Score=44.75 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=60.2
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
++.+||-.|+ |.|..++.+++.. +++|++++.+++.++.+. +.++.. . ++ |..+....+.+.. ...+.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~---~~~g~~--~-~~--~~~~~~~~~~~~~-~~~~~ 218 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLV---EELGFD--G-AI--DYKNEDLAAGLKR-ECPKG 218 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH---HTTCCS--E-EE--ETTTSCHHHHHHH-HCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH---HHcCCC--E-EE--ECCCHHHHHHHHH-hcCCC
Confidence 3478999987 5788888888875 569999999998777763 233432 1 11 2211000111111 11357
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+|+|+.|-. ...+..+.+.|+++|.+++
T Consensus 219 ~d~vi~~~g---------------------------------~~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 219 IDVFFDNVG---------------------------------GEILDTVLTRIAFKARIVL 246 (336)
T ss_dssp EEEEEESSC---------------------------------HHHHHHHHTTEEEEEEEEE
T ss_pred ceEEEECCC---------------------------------cchHHHHHHHHhhCCEEEE
Confidence 999987521 0356778889999999876
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.14 E-value=0.55 Score=41.33 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=53.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++.+.+.++.+...+...+ .++.++..|+.++...+.+.... ..++
T Consensus 29 k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (283)
T 3v8b_A 29 PVALITGA-GSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKFGH 105 (283)
T ss_dssp CEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56666654 455555555443 37899999999988877766654433 45889999996544332211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-+.
T Consensus 106 iD~lVnnAg~~ 116 (283)
T 3v8b_A 106 LDIVVANAGIN 116 (283)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999997654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.18 Score=45.79 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=34.1
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+ |.|..++.+++.. +++|++++.+++.++.++
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~ 208 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAK 208 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 3478999998 6788888888876 569999999998888775
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.65 Score=41.57 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=55.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS------------KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis------------~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+++|=.| |+|.++.++++.+ .+++|+.+|.+ .+.++.+...+...+ .++.++.+|+.++...+
T Consensus 47 k~~lVTG-as~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~ 123 (317)
T 3oec_A 47 KVAFITG-AARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLASLQ 123 (317)
T ss_dssp CEEEESS-CSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHH
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHH
Confidence 4565555 5555555555543 37899999986 666666555555544 45899999996544332
Q ss_pred ccCcCc--CCCCeeEEEEcCCCCCCCCCCCCC
Q psy7093 207 NLQPDL--LEQKFDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 207 ~l~~~~--~~~~fDlIv~NPPy~~~~~~~~l~ 236 (322)
.+.... ..++.|++|.|.-+.....+..+.
T Consensus 124 ~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~ 155 (317)
T 3oec_A 124 AVVDEALAEFGHIDILVSNVGISNQGEVVSLT 155 (317)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCBCTTTCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCC
Confidence 221100 125789999998765544433333
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.8 Score=39.94 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=54.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-------------CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-------------SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-------------s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
+++|=.|+ +|.++.++++.+ .+++|+.+|. +...++.+.+.+...+ .++.++..|+.+....
T Consensus 12 k~~lVTGa-s~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 12 RVAFITGA-ARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFDRL 88 (277)
T ss_dssp CEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred CEEEEECC-ccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHH
Confidence 56666654 455555555433 3789999998 6777766665555544 4589999999654433
Q ss_pred cccCcCc--CCCCeeEEEEcCCCCCCCCC
Q psy7093 206 KNLQPDL--LEQKFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 206 ~~l~~~~--~~~~fDlIv~NPPy~~~~~~ 232 (322)
..+.... ..++.|++|.|.-+.....+
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~ 117 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAGVAAPQAW 117 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCh
Confidence 2221100 12578999999876554433
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.87 E-value=3.2 Score=38.16 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=74.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+||.++.+-|.+++.++.. .++.+.-|--+-..++.|+..+++.. .+++... + +. ....||+
T Consensus 40 ~~~~~~~d~~gal~~~~~~~----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~------~~-----~~~~~~~ 103 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEH----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-T------AD-----YPQQPGV 103 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGG----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-T------SC-----CCSSCSE
T ss_pred CCEEEECCCCCHHHHhhccC----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-c------cc-----cccCCCE
Confidence 67999999999999998765 23445447777788899999998864 3555432 1 22 2457999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC--HHHHHHHHHHc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH--LDKIKEWLGIC 294 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~--~~~~~~~l~~~ 294 (322)
|+.-.|- .+......+..+...|++|+.+++ .|... ...+.+.+++.
T Consensus 104 v~~~lpk---------------------------~~~~l~~~L~~l~~~l~~~~~i~~-~g~~~~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 104 VLIKVPK---------------------------TLALLEQQLRALRKVVTSDTRIIA-GAKARDIHTSTLELFEKV 152 (375)
T ss_dssp EEEECCS---------------------------CHHHHHHHHHHHHTTCCTTSEEEE-EEEGGGCCHHHHHHHHHH
T ss_pred EEEEcCC---------------------------CHHHHHHHHHHHHhhCCCCCEEEE-EecccchHHHHHHHHHhh
Confidence 9885441 122356788889999999998865 44321 24455555554
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.86 E-value=0.2 Score=46.03 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=33.9
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+|. |.+++.+|+.....+|+++|.+++.++.++
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 234 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 234 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 347899999864 888889999875448999999998888775
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.22 Score=45.20 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.++
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~ 211 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFR 211 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHH
Confidence 3478999998 5778888888875 569999999888776665
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=90.76 E-value=0.62 Score=40.22 Aligned_cols=85 Identities=7% Similarity=0.089 Sum_probs=52.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.+|.+.+.++.....+ + .++.++.+|+.++...+.+... -..++
T Consensus 9 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 82 (259)
T 4e6p_A 9 KSALITG-SARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEHAGG 82 (259)
T ss_dssp CEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 5666665 5555655555543 3689999999988766554433 2 3588999999654433221110 01347
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|..+.....
T Consensus 83 id~lv~~Ag~~~~~~ 97 (259)
T 4e6p_A 83 LDILVNNAALFDLAP 97 (259)
T ss_dssp CCEEEECCCCCCCBC
T ss_pred CCEEEECCCcCCCCC
Confidence 999999987654433
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.74 E-value=0.17 Score=45.53 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-.| +|.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~ 183 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK 183 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence 347899988 45677777777765 5699999999988877764
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.37 Score=41.90 Aligned_cols=91 Identities=21% Similarity=0.197 Sum_probs=55.5
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
++||=-|+++| .++..++++ +++|+.+|.+++.++...+ .+ .++.++++|+.++...+.+... -..+
T Consensus 3 K~vlVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~----~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g 74 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEA--GDKVCFIDIDEKRSADFAK----ER--PNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHT----TC--TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hc--CCEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 56665565555 344444444 7899999999876654332 12 3488899999665433322110 0136
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
+.|++|.|--......+..+..+.
T Consensus 75 ~iDiLVNNAG~~~~~~~~~~~~e~ 98 (247)
T 3ged_A 75 RIDVLVNNACRGSKGILSSLLYEE 98 (247)
T ss_dssp CCCEEEECCCCCCCCGGGTCCHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHH
Confidence 799999998766555555555543
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=0.46 Score=41.69 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=52.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC----------------HHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS----------------KHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis----------------~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+++|=-|++ |.++.++++.+ .+++|+.+|.+ .+.++.....+...+ .++.++..|+.++
T Consensus 12 k~~lVTGas-~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 12 KVAFVTGAA-RGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVRDY 88 (286)
T ss_dssp CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCCCH
Confidence 566666655 44555555443 37899999987 666665555554433 4689999999654
Q ss_pred ccccccCcCc--CCCCeeEEEEcCCCCCC
Q psy7093 203 GQVKNLQPDL--LEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 203 ~~~~~l~~~~--~~~~fDlIv~NPPy~~~ 229 (322)
...+.+.... ..++.|++|.|.-+...
T Consensus 89 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~ 117 (286)
T 3uve_A 89 DALKAAVDSGVEQLGRLDIIVANAGIGNG 117 (286)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcccCC
Confidence 4332221100 12478999999876543
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=90.50 E-value=1.9 Score=37.31 Aligned_cols=91 Identities=10% Similarity=0.132 Sum_probs=54.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+++|=-|. ++.++.++++.+ .+++|+.+|.+.. +.+.+.+...+ .++.++..|+.++...+.+ ...++.|
T Consensus 10 KvalVTGa-s~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~---~~~g~iD 81 (247)
T 4hp8_A 10 RKALVTGA-NTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDS---FTDAGFD 81 (247)
T ss_dssp CEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTS---STTTCCC
T ss_pred CEEEEeCc-CCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHH---HHhCCCC
Confidence 45554454 444544444432 2789999998742 22333344444 3588899999665443332 3457899
Q ss_pred EEEEcCCCCCCCCCCCCChhh
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v 239 (322)
++|.|--......+.++..+.
T Consensus 82 iLVNNAGi~~~~~~~~~~~~~ 102 (247)
T 4hp8_A 82 ILVNNAGIIRRADSVEFSELD 102 (247)
T ss_dssp EEEECCCCCCCCCGGGCCHHH
T ss_pred EEEECCCCCCCCCcccccHHH
Confidence 999998766555555555543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=90.49 E-value=0.2 Score=46.03 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=33.6
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-+|+|. |.+++.+|+.....+|+++|.+++.++.++
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 233 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 347899999874 788888888865448999999998887775
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.48 E-value=0.61 Score=39.71 Aligned_cols=85 Identities=11% Similarity=-0.012 Sum_probs=50.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++...... + .++.++..|+.++...+.+.... ..++
T Consensus 4 k~vlVTG-as~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 77 (235)
T 3l6e_A 4 GHIIVTG-AGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL---G--NAVIGIVADLAHHEDVDVAFAAAVEWGGL 77 (235)
T ss_dssp CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c--CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4566555 4455555555543 3789999999998877665544 2 24889999996544332211100 1257
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|.-......
T Consensus 78 id~lvnnAg~~~~~~ 92 (235)
T 3l6e_A 78 PELVLHCAGTGEFGP 92 (235)
T ss_dssp CSEEEEECCCC----
T ss_pred CcEEEECCCCCCCCC
Confidence 899999987654433
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.58 Score=40.50 Aligned_cols=83 Identities=8% Similarity=0.192 Sum_probs=55.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.+......+.... ..++
T Consensus 30 k~vlITG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 106 (262)
T 3rkr_A 30 QVAVVTG-ASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAHGR 106 (262)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 5566555 5666766666543 36899999999998887777776554 35899999995544332211100 1247
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|++|.|..+
T Consensus 107 id~lv~~Ag~ 116 (262)
T 3rkr_A 107 CDVLVNNAGV 116 (262)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999999765
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.25 Score=43.38 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=55.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++.+++.++.....+...+ .++.++.+|+.++...+.+.... ..++
T Consensus 33 k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 109 (276)
T 3r1i_A 33 KRALITGA-STGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGELGG 109 (276)
T ss_dssp CEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56665554 455555555543 36899999999888777766666554 35888999996554332221100 1247
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|.-......
T Consensus 110 iD~lvnnAg~~~~~~ 124 (276)
T 3r1i_A 110 IDIAVCNAGIVSVQA 124 (276)
T ss_dssp CSEEEECCCCCCCCC
T ss_pred CCEEEECCCCCCCCC
Confidence 899999987655443
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=90.42 E-value=1.2 Score=41.34 Aligned_cols=43 Identities=21% Similarity=0.331 Sum_probs=33.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-------PKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-------~~~~v~~vDis~~al~~A~~n~ 183 (322)
..|+|+|.|+|.++.-+++.+ ...+++.||+|+...+.-++++
T Consensus 82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 579999999999988776542 2358999999997776555444
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.40 E-value=0.98 Score=39.41 Aligned_cols=94 Identities=9% Similarity=0.088 Sum_probs=56.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS------------KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis------------~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+++|=.|+ +|.++.++++.+ .+++|+.+|.+ .+.++.....+...+ .++.++..|+.++...+
T Consensus 11 k~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~ 87 (281)
T 3s55_A 11 KTALITGG-ARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRAALE 87 (281)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHH
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHH
Confidence 56766665 455555555543 37899999986 566655555555544 45899999996544332
Q ss_pred ccCcCc--CCCCeeEEEEcCCCCCCCCCCCCCh
Q psy7093 207 NLQPDL--LEQKFDLVVSNPPYVPSLDIPKLEP 237 (322)
Q Consensus 207 ~l~~~~--~~~~fDlIv~NPPy~~~~~~~~l~~ 237 (322)
.+.... ..++.|++|.|.-+........+..
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~ 120 (281)
T 3s55_A 88 SFVAEAEDTLGGIDIAITNAGISTIALLPEVES 120 (281)
T ss_dssp HHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCH
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCCCcccCCH
Confidence 221100 1247899999987655444444433
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.54 Score=44.29 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=48.3
Q ss_pred CCCCcccCchhHH-----HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHH
Q psy7093 112 TPPVFIPRSETEE-----LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-----KLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 112 ~~~~~iprp~te~-----lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-----~~~v~~vDis~~al~~A~~ 181 (322)
..|.|+-.|+... +..++.+...... +..|+|+|.|+|.++.-+++.+. ..+++.||+|+..-+.-++
T Consensus 107 ~~GDFiTAPeiS~~FGe~la~~~~~~~~~~g--~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~ 184 (432)
T 4f3n_A 107 DGSDFVTAPELSPLFAQTLARPVAQALDASG--TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRE 184 (432)
T ss_dssp ---CCSSCGGGHHHHHHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHH
T ss_pred CCCCccCchhhhHHHHHHHHHHHHHHHHhcC--CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHH
Confidence 3578887777643 3345555444332 37899999999998887775431 2489999999988777776
Q ss_pred HHHH
Q psy7093 182 NAVM 185 (322)
Q Consensus 182 n~~~ 185 (322)
++..
T Consensus 185 ~L~~ 188 (432)
T 4f3n_A 185 TLGA 188 (432)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.32 E-value=0.37 Score=43.90 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=32.6
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+ |.|..++.+++.. +++|++++.+++.++.++
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~ 212 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL 212 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH
T ss_pred CcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHH
Confidence 3478999996 6778888888875 579999999998877654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.26 E-value=0.98 Score=39.31 Aligned_cols=89 Identities=9% Similarity=0.191 Sum_probs=56.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.++..++.....+...+...++.++.+|+.++.....+.... ..+.
T Consensus 33 k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 111 (279)
T 1xg5_A 33 RLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG 111 (279)
T ss_dssp CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 5666555 5666666666543 367999999998887766666665554456888999995544322211000 1246
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
+|+||.|..+....
T Consensus 112 iD~vi~~Ag~~~~~ 125 (279)
T 1xg5_A 112 VDICINNAGLARPD 125 (279)
T ss_dssp CSEEEECCCCCCCC
T ss_pred CCEEEECCCCCCCC
Confidence 89999998765433
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.4 Score=41.23 Aligned_cols=90 Identities=18% Similarity=0.307 Sum_probs=54.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+++|+.+|.+++.++.+...+ + .++.++.+|+.++...+.+.... ..++
T Consensus 7 k~vlVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 7 KTALVTGA-AQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G--KKARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 56666654 455555555443 3789999999988776554433 3 45889999996544332221100 1247
Q ss_pred eeEEEEcCCCCCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~ 236 (322)
.|++|.|.-+.....+..+.
T Consensus 81 id~lv~nAg~~~~~~~~~~~ 100 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVD 100 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCC
T ss_pred CCEEEECCCCCCCCCcccCC
Confidence 89999998766544443333
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.33 Score=42.24 Aligned_cols=128 Identities=10% Similarity=0.111 Sum_probs=70.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC---HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS---KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis---~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++.+ .+.++.+...+...+ .++.++..|+.++...+.+.... .
T Consensus 12 k~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 88 (262)
T 3ksu_A 12 KVIVIAGG-IKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAEKE 88 (262)
T ss_dssp CEEEEETC-SSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56665554 555666666654 36789988653 445555544444333 46899999996544332221100 1
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 214 EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.++.|++|.|.-............+.. +.... -.+.-.-.+++.+...++++|.+++.
T Consensus 89 ~g~iD~lvnnAg~~~~~~~~~~~~~~~--~~~~~-----~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 89 FGKVDIAINTVGKVLKKPIVETSEAEF--DAMDT-----INNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp HCSEEEEEECCCCCCSSCGGGCCHHHH--HHHHH-----HHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHH--HHHHH-----HHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 257999999987654443333332211 10000 00111235666777777888887763
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.48 Score=42.00 Aligned_cols=128 Identities=12% Similarity=0.020 Sum_probs=69.2
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+++ +.++.++++.+ .+++|+.++.++...+.+.+-....+ ++.++.+|+.++...+.+.... ..+
T Consensus 31 k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (296)
T 3k31_A 31 KKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEEWG 107 (296)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 6788777653 24444444332 27899999999765555554444443 3678899996654333221100 125
Q ss_pred CeeEEEEcCCCCCC----CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPS----LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~----~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.|++|.|.-+... ........+. ++-... -.+.-...+++.+...++.+|.+++.
T Consensus 108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~--~~~~~~-----vN~~g~~~l~~~~~~~m~~~g~IV~i 167 (296)
T 3k31_A 108 SLDFVVHAVAFSDKNELKGRYVDTSLGN--FLTSMH-----ISCYSFTYIASKAEPLMTNGGSILTL 167 (296)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHH--HHHHHH-----HHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred CCCEEEECCCcCCcccccCChhhCCHHH--HHHHHH-----HHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 78999999765432 1111222111 000000 00111335667777788888887764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.00 E-value=0.19 Score=46.32 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=33.9
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||=+|+| .|.+++.+|+.....+|+++|.+++.++.|+
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~ 235 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK 235 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34688888987 4888889998865458999999998888775
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.00 E-value=0.9 Score=39.03 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=52.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.++..++...+.+...+ .++.++.+|+.++.....+... -..++
T Consensus 3 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (256)
T 1geg_A 3 KVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG 79 (256)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 4555555 4555666665543 36799999999887766655555443 3588899999654433221100 01257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|.-+..
T Consensus 80 id~lv~nAg~~~ 91 (256)
T 1geg_A 80 FDVIVNNAGVAP 91 (256)
T ss_dssp CCEEEECCCCCC
T ss_pred CCEEEECCCCCC
Confidence 899999976543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.93 E-value=1.2 Score=37.81 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=57.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.+....+.+... -..++
T Consensus 6 k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 6 KVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAENLA 82 (247)
T ss_dssp CEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4566555 5566665555543 36899999999988887777666654 3589999999654433221110 02357
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|.-+.....
T Consensus 83 id~li~~Ag~~~~~~ 97 (247)
T 3lyl_A 83 IDILVNNAGITRDNL 97 (247)
T ss_dssp CSEEEECCCCCCCCC
T ss_pred CCEEEECCCCCCCCc
Confidence 899999987655443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=89.92 E-value=0.26 Score=44.59 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=33.0
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||-.|+| .|..++.+++.. +++|+++|.++..++.++
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~ 205 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAK 205 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence 4789999986 578888888886 569999999998888775
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.90 E-value=0.8 Score=39.66 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=59.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=. .|+|.++.++++.+ .+.+|+.++.+++.++.+...+...+ ..++.++..|+.++...+.+.... ..++
T Consensus 11 k~vlVT-Gas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 88 (262)
T 3pk0_A 11 RSVVVT-GGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEEFGG 88 (262)
T ss_dssp CEEEET-TCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 455544 45666666666543 36799999999988877776665544 246899999996544332221100 1247
Q ss_pred eeEEEEcCCCCCCCCCCCCCh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEP 237 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~ 237 (322)
.|++|.|.-+........+..
T Consensus 89 id~lvnnAg~~~~~~~~~~~~ 109 (262)
T 3pk0_A 89 IDVVCANAGVFPDAPLATMTP 109 (262)
T ss_dssp CSEEEECCCCCCCCCTTTCCH
T ss_pred CCEEEECCCCCCCCChhhCCH
Confidence 899999987655444444433
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.27 Score=45.20 Aligned_cols=42 Identities=21% Similarity=0.133 Sum_probs=33.7
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||=+|+| .|.+++.+|+.+...+|+++|.+++.++.++
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 237 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 34789999987 4788889999875448999999998887765
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.67 Score=40.95 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=36.3
Q ss_pred HHHHHHHhccCccCcEEEEEEc-CC--CHHHHHHHHHHcCCCCceeeEEEecCCC---CCCeEEEE
Q psy7093 259 KPICVFGSNYLKPNGSIFLETN-HD--HLDKIKEWLGICGHHMKLKLVENYKDFN---NKDRFVEL 318 (322)
Q Consensus 259 ~~~l~~~~~~Lk~gG~l~~e~~-~~--~~~~~~~~l~~~~~~~~~~~v~~~~D~~---g~~R~~~~ 318 (322)
.-++..|.++|+|||.+++-.- .. ..+.+...+.+. |..+.+.|-.+ ..+-|+++
T Consensus 234 ~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~-----F~~Vr~vKP~ASR~StEvf~La 294 (320)
T 2hwk_A 234 SMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQ-----FKFSRVCKPKSSLEETEVLFVF 294 (320)
T ss_dssp HHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT-----EEEEEEECCTTCCSTTCEEEEE
T ss_pred HHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHh-----cceeeeeCCCCccccceEEEEE
Confidence 3478889999999999988652 23 355566666553 78888776533 34444444
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.25 Score=44.85 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=34.1
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.|+ |.|..++.+++.. +++|++++.+++.++.+++
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~ 202 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS 202 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh
Confidence 3478999986 5788888899886 5699999999888877764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=89.74 E-value=0.29 Score=44.99 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=33.7
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+|. |.+++.+|+.....+|+++|.+++.++.++
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 233 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 233 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 347899999875 888888998875448999999998887775
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=0.65 Score=40.16 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=53.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAI-DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~v-Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=- .|+|.++.++++.+ .+.+|+.+ +.++..++.+.+.+...+ .++.++.+|+.++...+.+-... ..+
T Consensus 5 k~vlVT-Gas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 5 KCALVT-GSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CEEEES-SCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEe-cCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 455544 45566666666543 36788886 888887776666655444 45899999996554332221100 125
Q ss_pred CeeEEEEcCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSL 230 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~ 230 (322)
+.|++|.|.-.....
T Consensus 82 ~id~lv~nAg~~~~~ 96 (258)
T 3oid_A 82 RLDVFVNNAASGVLR 96 (258)
T ss_dssp CCCEEEECCCCCCCS
T ss_pred CCCEEEECCCCCCCC
Confidence 789999998654433
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.84 Score=39.99 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=54.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+++|+.+|.+++.++..... .+ .++.++..|+.+....+.+.... ..++
T Consensus 28 k~vlVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (277)
T 4dqx_A 28 RVCIVTGG-GSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---IG--SKAFGVRVDVSSAKDAESMVEKTTAKWGR 101 (277)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---HC--TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 56665554 555555555543 378999999998776655433 22 45889999996544332211100 1247
Q ss_pred eeEEEEcCCCCCCCCCCCCCh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEP 237 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~ 237 (322)
.|++|.|.-+.........+.
T Consensus 102 iD~lv~nAg~~~~~~~~~~~~ 122 (277)
T 4dqx_A 102 VDVLVNNAGFGTTGNVVTIPE 122 (277)
T ss_dssp CCEEEECCCCCCCBCTTTSCH
T ss_pred CCEEEECCCcCCCCCcccCCH
Confidence 899999987655444433333
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.26 Score=44.95 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=33.1
Q ss_pred CCCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.| .|.|..++.+++.. +++|++++.+++.++.+++
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~ 210 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACER 210 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh
Confidence 347888884 45688888888875 5699999999998888764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=89.64 E-value=0.24 Score=45.43 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+|. |.+++.+|+.....+|+++|.+++.++.++
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~ 232 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 232 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 347899999864 788888888865448999999998888776
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=0.97 Score=48.46 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=55.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc------cc-ccccCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKL--KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK------GQ-VKNLQP 210 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~------~~-~~~l~~ 210 (322)
..+++|++||.|.+++.+... +. .+.++|+++.|++.-+.|.. ...++..|+.+- ++ ......
T Consensus 851 ~l~viDLFsG~GGlslGfe~A--G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~gdi~~~~~~ 922 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA--GISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLLKLVMAGEVTNSLGQ 922 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT--TSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHHHHHTTTCSBCSSCC
T ss_pred CceEEecccCccHHHHHHHHC--CCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHhHhhhccchhhhhhh
Confidence 368999999999999988776 43 47899999999988877741 234555554100 00 000001
Q ss_pred CcC-CCCeeEEEEcCCCCCCCC
Q psy7093 211 DLL-EQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 211 ~~~-~~~fDlIv~NPPy~~~~~ 231 (322)
.++ .+.+|+|+.-||.-..+.
T Consensus 923 ~lp~~~~vDvl~GGpPCQ~FS~ 944 (1330)
T 3av4_A 923 RLPQKGDVEMLCGGPPCQGFSG 944 (1330)
T ss_dssp BCCCTTTCSEEEECCCCTTTCS
T ss_pred hccccCccceEEecCCCccccc
Confidence 111 347899999999776554
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.5 Score=42.70 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+ |.|..++.+++.. +++|++++.+++.++.++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~ 197 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLK 197 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 3478999996 6788888888875 569999999998877765
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.55 E-value=0.4 Score=42.06 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=55.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~f 217 (322)
+++|=.| |+|.++.++++.+ .+++|+.++.+++.++.+...+...+ .++.++.+|+.+......+... ...++.
T Consensus 34 k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i 110 (275)
T 4imr_A 34 RTALVTG-SSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIAPV 110 (275)
T ss_dssp CEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 5566544 5566666665543 36899999999887777666665544 4589999999554332221110 011578
Q ss_pred eEEEEcCCCCCCCC
Q psy7093 218 DLVVSNPPYVPSLD 231 (322)
Q Consensus 218 DlIv~NPPy~~~~~ 231 (322)
|++|.|.-......
T Consensus 111 D~lvnnAg~~~~~~ 124 (275)
T 4imr_A 111 DILVINASAQINAT 124 (275)
T ss_dssp CEEEECCCCCCCBC
T ss_pred CEEEECCCCCCCCC
Confidence 99999986554433
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.28 Score=44.18 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=33.2
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~ 188 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK 188 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 3478999884 6778888888875 5699999999988877754
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.78 Score=40.13 Aligned_cols=128 Identities=12% Similarity=0.101 Sum_probs=67.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKH-ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~-al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|= -.|+|.++.++++.+ .+.+|++++.++. ..+.+.+.+...+ .++.++..|+.+......+.... ..+
T Consensus 30 k~vlV-TGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 106 (283)
T 1g0o_A 30 KVALV-TGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIFG 106 (283)
T ss_dssp CEEEE-TTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEE-eCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45554 445666776666643 3679999998754 3444444444443 35888999985544322211000 124
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.|++|.|.-+.....+..+..+. ++-.... .+.-...+++.+...++.+|.+++.
T Consensus 107 ~iD~lv~~Ag~~~~~~~~~~~~~~--~~~~~~~-----N~~g~~~l~~~~~~~~~~~g~iv~i 162 (283)
T 1g0o_A 107 KLDIVCSNSGVVSFGHVKDVTPEE--FDRVFTI-----NTRGQFFVAREAYKHLEIGGRLILM 162 (283)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHH--HHHHHHH-----HTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCEEEECCCcCCCCCcccCCHHH--HHHHHHH-----hhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 789999997655433222222221 1100000 0111234556666666777887763
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=89.37 E-value=0.38 Score=43.91 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-+|+| .|.+++.+|+.. +++|+++|.++..++.+++
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK 221 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence 34789999975 478888888875 5689999999888877764
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.21 E-value=1.2 Score=38.77 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=53.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNA-VMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~-~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.++..++.+...+ ...+ .++.++.+|+.++...+.+.... ..+
T Consensus 22 k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 98 (267)
T 1vl8_A 22 RVALVTG-GSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEKFG 98 (267)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5566555 5566666666543 3689999999988776655544 3333 35888999995544322211100 124
Q ss_pred CeeEEEEcCCCCCC
Q psy7093 216 KFDLVVSNPPYVPS 229 (322)
Q Consensus 216 ~fDlIv~NPPy~~~ 229 (322)
+.|++|.|..+...
T Consensus 99 ~iD~lvnnAg~~~~ 112 (267)
T 1vl8_A 99 KLDTVVNAAGINRR 112 (267)
T ss_dssp CCCEEEECCCCCCC
T ss_pred CCCEEEECCCcCCC
Confidence 78999999876543
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.21 E-value=0.85 Score=39.29 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++||=.|++ +|.++.++++.+ .+.+|+.++.+....+.+++-....+ ++.++.+|+.++...+.+-... ..
T Consensus 14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~ 90 (271)
T 3ek2_A 14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKTHW 90 (271)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4778877764 355665555543 36899999988655555444444433 3788999996554332221100 12
Q ss_pred CCeeEEEEcCCCCCC----CCCCC-CChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 215 QKFDLVVSNPPYVPS----LDIPK-LEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~----~~~~~-l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
++.|++|.|.-+... ..... +..+. ++..... .+.-...+++.+...++++|.+++.
T Consensus 91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~--~~~~~~~-----n~~~~~~l~~~~~~~~~~~g~iv~i 152 (271)
T 3ek2_A 91 DSLDGLVHSIGFAPREAIAGDFLDGLTREN--FRIAHDI-----SAYSFPALAKAALPMLSDDASLLTL 152 (271)
T ss_dssp SCEEEEEECCCCCCGGGGSSCTTTTCCHHH--HHHHHHH-----HTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCEEEECCccCccccccCccccccCHHH--HHHHHhh-----hHHHHHHHHHHHHHHhccCceEEEE
Confidence 579999999865542 11111 22211 0000000 0011235666777777778887663
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.20 E-value=0.49 Score=41.13 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=50.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+.+. .. .++.++.+|+.++...+.+.... ..++
T Consensus 7 k~vlITG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (263)
T 2a4k_A 7 KTILVTG-AASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---LE--AEAIAVVADVSDPKAVEAVFAEALEEFGR 80 (263)
T ss_dssp CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT---CC--SSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hc--CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5566555 4555666665543 368999999998766544322 22 45889999996544332211100 1246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|++|.|.-+...
T Consensus 81 iD~lvnnAg~~~~ 93 (263)
T 2a4k_A 81 LHGVAHFAGVAHS 93 (263)
T ss_dssp CCEEEEGGGGTTT
T ss_pred CcEEEECCCCCCC
Confidence 8999999765443
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=89.17 E-value=0.75 Score=39.61 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=56.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~f 217 (322)
+++|=.|++ |.++.++++.+ .+.+|+.++.+++.++.+...+...+ .++.++.+|+.++...+.+.... ..++.
T Consensus 8 k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i 84 (252)
T 3h7a_A 8 ATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHAPL 84 (252)
T ss_dssp CEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence 566666554 44555555433 26899999999988887777776654 46899999996654332221100 01579
Q ss_pred eEEEEcCCCCCCCC
Q psy7093 218 DLVVSNPPYVPSLD 231 (322)
Q Consensus 218 DlIv~NPPy~~~~~ 231 (322)
|++|.|.-......
T Consensus 85 d~lv~nAg~~~~~~ 98 (252)
T 3h7a_A 85 EVTIFNVGANVNFP 98 (252)
T ss_dssp EEEEECCCCCCCCC
T ss_pred eEEEECCCcCCCCC
Confidence 99999987655433
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=89.13 E-value=0.91 Score=39.71 Aligned_cols=89 Identities=6% Similarity=0.063 Sum_probs=56.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|++++.++..++.+.+.+...+ .++.++.+|+.++.....+.... ..++
T Consensus 25 k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (279)
T 3sju_A 25 QTAFVTGV-SSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERFGP 101 (279)
T ss_dssp CEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56776664 455555555433 37899999999988877776665544 45899999996544332211100 1257
Q ss_pred eeEEEEcCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDI 232 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~ 232 (322)
.|++|.|.-.......
T Consensus 102 id~lv~nAg~~~~~~~ 117 (279)
T 3sju_A 102 IGILVNSAGRNGGGET 117 (279)
T ss_dssp CCEEEECCCCCCCSCG
T ss_pred CcEEEECCCCCCCCCh
Confidence 8999999876554433
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.31 Score=44.41 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.| .|.|..++.+++.. +++|+++|.+++.++.++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~ 204 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAE 204 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence 347899887 36777778888775 579999999998887774
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=88.97 E-value=0.19 Score=43.80 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=49.5
Q ss_pred CeEEEEcC-chhHHHHHHHHhC--CCCEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 141 TRMIEIGS-GTGAITISLLKHF--PKLKAIAIDQSKHA-CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~-GsG~~~~~la~~~--~~~~v~~vDis~~a-l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++|=.|+ |+|.++.++++.+ .+++|+.++.++.. ++... ... ..++.++.+|+.++...+.+.... ..
T Consensus 8 k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (269)
T 2h7i_A 8 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRIT---DRL--PAKAPLLELDVQNEEHLASLAGRVTEAI 82 (269)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHH---TTS--SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHH---Hhc--CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence 57777776 3777777776643 36799999988643 22221 122 335788899996544332221100 11
Q ss_pred C---CeeEEEEcCCCC
Q psy7093 215 Q---KFDLVVSNPPYV 227 (322)
Q Consensus 215 ~---~fDlIv~NPPy~ 227 (322)
+ +.|++|.|.-..
T Consensus 83 g~~~~iD~lv~nAg~~ 98 (269)
T 2h7i_A 83 GAGNKLDGVVHSIGFM 98 (269)
T ss_dssp CTTCCEEEEEECCCCC
T ss_pred CCCCCceEEEECCccC
Confidence 3 799999997644
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=0.99 Score=39.29 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=54.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+++|+.++. +...++.....+...+ .++.++.+|+.+....+.+.... ..+
T Consensus 29 k~vlVTG-as~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~~~g 105 (269)
T 4dmm_A 29 RIALVTG-ASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIERWG 105 (269)
T ss_dssp CEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4555544 5566666655543 3689999888 6777766666565544 35889999996554332221100 124
Q ss_pred CeeEEEEcCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLD 231 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~ 231 (322)
+.|++|.|.-......
T Consensus 106 ~id~lv~nAg~~~~~~ 121 (269)
T 4dmm_A 106 RLDVLVNNAGITRDTL 121 (269)
T ss_dssp CCCEEEECCCCCCCCC
T ss_pred CCCEEEECCCCCCCCC
Confidence 7899999987654443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.55 Score=36.38 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=46.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+|+=+|+| .++..+++.+ .+.+|+++|.+++.++.++. .+ +.++.+|..++..+... ....+|
T Consensus 7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~----~~~~~d 72 (141)
T 3llv_A 7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSL----DLEGVS 72 (141)
T ss_dssp CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHS----CCTTCS
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhC----CcccCC
Confidence 468888875 4555555543 26789999999988766653 22 67788998554333222 234689
Q ss_pred EEEEcCC
Q psy7093 219 LVVSNPP 225 (322)
Q Consensus 219 lIv~NPP 225 (322)
.|+...|
T Consensus 73 ~vi~~~~ 79 (141)
T 3llv_A 73 AVLITGS 79 (141)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9888554
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.67 E-value=0.89 Score=39.26 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=52.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+...+ .++.++.+|+.++.....+.... ..++
T Consensus 8 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 84 (262)
T 1zem_A 8 KVCLVTG-AGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFGK 84 (262)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 5666555 4555666665543 36899999999887776665554433 35888999995544322211000 1247
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-..
T Consensus 85 id~lv~nAg~~ 95 (262)
T 1zem_A 85 IDFLFNNAGYQ 95 (262)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999997643
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.7 Score=40.41 Aligned_cols=87 Identities=7% Similarity=0.004 Sum_probs=53.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++.+...++.+...+.. .+ .++.++.+|+.++...+.+.... ..+
T Consensus 28 k~~lVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 104 (277)
T 4fc7_A 28 KVAFITGG-GSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG--RRCLPLSMDVRAPPAVMAAVDQALKEFG 104 (277)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56666554 555666555543 367999999998877665555432 23 35899999996544332211100 125
Q ss_pred CeeEEEEcCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSL 230 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~ 230 (322)
+.|++|.|.-.....
T Consensus 105 ~id~lv~nAg~~~~~ 119 (277)
T 4fc7_A 105 RIDILINCAAGNFLC 119 (277)
T ss_dssp CCCEEEECCCCCCCC
T ss_pred CCCEEEECCcCCCCC
Confidence 789999998654433
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=1.3 Score=37.85 Aligned_cols=94 Identities=11% Similarity=0.125 Sum_probs=55.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++| +-.|+|.++.++++.+ .+.+|+.++. +++.++...+.+...+ .++.++.+|+.+....+.+.... ..+
T Consensus 5 k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 5 KSAL-VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4455 4455666666666543 3678988887 5566666655555544 35889999996544332211100 124
Q ss_pred CeeEEEEcCCCCCCCCCCCCCh
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEP 237 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~ 237 (322)
+.|++|.|..+........+..
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~ 103 (246)
T 3osu_A 82 SLDVLVNNAGITRDNLLMRMKE 103 (246)
T ss_dssp CCCEEEECCCCCCCCCTTTCCH
T ss_pred CCCEEEECCCCCCCCCcccCCH
Confidence 7899999987665444433333
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=88.64 E-value=0.81 Score=38.58 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=50.7
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+ ..++.++..|+.+....+.+... ....+|+
T Consensus 3 ~vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~-~~~~~d~ 75 (230)
T 3guy_A 3 LIVITG-ASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQ-LDSIPST 75 (230)
T ss_dssp CEEEES-TTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHS-CSSCCSE
T ss_pred EEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHH-HhhcCCE
Confidence 355455 4555666555543 3678999999988766554322 34588899999554433322111 1234699
Q ss_pred EEEcCCCCCCCCC
Q psy7093 220 VVSNPPYVPSLDI 232 (322)
Q Consensus 220 Iv~NPPy~~~~~~ 232 (322)
+|.|.........
T Consensus 76 lv~~Ag~~~~~~~ 88 (230)
T 3guy_A 76 VVHSAGSGYFGLL 88 (230)
T ss_dssp EEECCCCCCCSCG
T ss_pred EEEeCCcCCCCcc
Confidence 9999876544433
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=0.5 Score=43.20 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=34.0
Q ss_pred CCCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-.| .|.|..++.+++.. +++|++++.+++.++.+++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~ 206 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS 206 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH
Confidence 347899998 46788889999886 5699999999888877753
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.59 E-value=0.73 Score=41.56 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||=.|+| .|.+++.+|+......++++|.+++.++.|+
T Consensus 160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~ 202 (346)
T 4a2c_A 160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK 202 (346)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH
Confidence 34788888886 4677888888877778899999999888775
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=88.39 E-value=0.61 Score=41.02 Aligned_cols=127 Identities=12% Similarity=0.069 Sum_probs=68.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHH-------HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKH-------ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~-------al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~ 211 (322)
+++|=.|++ |.++.++++.+ .+.+|+.++.+.. .++.+.+.+...+ .++.++.+|+.++...+.+...
T Consensus 10 k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 10 KTMFISGGS-RGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp CEEEEESCS-SHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHH
Confidence 566666654 44555555543 3679999998865 3444444444444 3589999999654433222110
Q ss_pred c--CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc--CcEEEE
Q psy7093 212 L--LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP--NGSIFL 277 (322)
Q Consensus 212 ~--~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~--gG~l~~ 277 (322)
. ..++.|++|.|.-.........++.+.. +..... .+.-...+++.+...++. +|.++.
T Consensus 87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~--~~~~~v-----N~~g~~~l~~~~~~~m~~~~~g~iv~ 149 (285)
T 3sc4_A 87 TVEQFGGIDICVNNASAINLGSIEEVPLKRF--DLMNGI-----QVRGTYAVSQSCIPHMKGRDNPHILT 149 (285)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTSCHHHH--HHHHHH-----HHHHHHHHHHHHGGGTTTSSSCEEEE
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHH--HHHHHH-----HhHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 0 1247899999987665444444433321 100000 011123456666666653 466665
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.43 Score=42.01 Aligned_cols=84 Identities=11% Similarity=0.056 Sum_probs=52.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+...+ .++.++.+|+.++.....+.... ..++
T Consensus 9 k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (280)
T 3tox_A 9 KIAIVTG-ASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRFGG 85 (280)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4565554 4555665555543 37899999999988877666554333 45889999996544332221100 1247
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-..
T Consensus 86 iD~lvnnAg~~ 96 (280)
T 3tox_A 86 LDTAFNNAGAL 96 (280)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999997654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.31 E-value=1.5 Score=37.58 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=55.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|++ |.++.++++.+ .+++|+.++.+++.++.+.+.+....-. .++.++.+|+.+....+.+.... ..+
T Consensus 8 k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (250)
T 3nyw_A 8 GLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYG 86 (250)
T ss_dssp CEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhcC
Confidence 566665554 54555444432 2689999999998888777766554212 45889999995544322211100 125
Q ss_pred CeeEEEEcCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSL 230 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~ 230 (322)
+.|++|.|.-.....
T Consensus 87 ~iD~lvnnAg~~~~~ 101 (250)
T 3nyw_A 87 AVDILVNAAAMFMDG 101 (250)
T ss_dssp CEEEEEECCCCCCCC
T ss_pred CCCEEEECCCcCCCC
Confidence 799999998765443
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=88.23 E-value=1.8 Score=36.97 Aligned_cols=89 Identities=8% Similarity=0.076 Sum_probs=55.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+.+.+...+ .++.++.+|+.++...+.+.... ..++
T Consensus 8 k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 84 (247)
T 2jah_A 8 KVALITG-ASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEALGG 84 (247)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5666665 4555665555543 36899999999888776666555443 35889999995544332211100 1247
Q ss_pred eeEEEEcCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDI 232 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~ 232 (322)
.|++|.|.-+.....+
T Consensus 85 id~lv~nAg~~~~~~~ 100 (247)
T 2jah_A 85 LDILVNNAGIMLLGPV 100 (247)
T ss_dssp CSEEEECCCCCCCCCS
T ss_pred CCEEEECCCCCCCCch
Confidence 8999999876544333
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=87.72 E-value=0.87 Score=39.24 Aligned_cols=87 Identities=9% Similarity=0.197 Sum_probs=55.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+++|+.++.+++.++.+...+...+ .++.++.+|+.++...+.+.... ..++
T Consensus 7 k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (257)
T 3imf_A 7 KVVIITG-GSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKFGR 83 (257)
T ss_dssp CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4555444 5566666666543 36899999999988877766654433 46899999996544332221100 1247
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|.-.....
T Consensus 84 id~lv~nAg~~~~~ 97 (257)
T 3imf_A 84 IDILINNAAGNFIC 97 (257)
T ss_dssp CCEEEECCCCCCCC
T ss_pred CCEEEECCCCCCCC
Confidence 89999997654433
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=87.71 E-value=1.9 Score=36.97 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=52.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC--CCcccccccCcC--cCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI--DSKGQVKNLQPD--LLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~~~~~~l~~~--~~~ 214 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+...+- .++.++..|+ .+....+.+... ...
T Consensus 13 k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (252)
T 3f1l_A 13 RIILVTG-ASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAVNY 90 (252)
T ss_dssp CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence 5666555 4555665555543 368999999999888777666554431 2478888998 443322211100 013
Q ss_pred CCeeEEEEcCCCC
Q psy7093 215 QKFDLVVSNPPYV 227 (322)
Q Consensus 215 ~~fDlIv~NPPy~ 227 (322)
++.|++|.|.-..
T Consensus 91 g~id~lv~nAg~~ 103 (252)
T 3f1l_A 91 PRLDGVLHNAGLL 103 (252)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCccC
Confidence 5789999998653
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.71 E-value=0.68 Score=40.69 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|= -.|+|.++.++++.+ .+++|+.++.+++.++.+...+...+ ...+.++.+|+.++...+.+.... ..++
T Consensus 34 k~~lV-TGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 111 (281)
T 4dry_A 34 RIALV-TGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT-GNIVRAVVCDVGDPDQVAALFAAVRAEFAR 111 (281)
T ss_dssp CEEEE-TTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEE-eCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45554 445666666666543 36899999999988877766655433 223688999996554332221100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-..
T Consensus 112 iD~lvnnAG~~ 122 (281)
T 4dry_A 112 LDLLVNNAGSN 122 (281)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999997654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=87.62 E-value=1.1 Score=38.48 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=52.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=-| |+|.++.++++.+ .+++|+.++.++..++...+.+. .+..++..|+.++...+.+.... ..++
T Consensus 10 k~~lVTG-as~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (248)
T 3op4_A 10 KVALVTG-ASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKAITDEFGG 83 (248)
T ss_dssp CEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 4566555 4555666555543 37899999999887766554432 24778899996544332221100 1247
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|.-+.....
T Consensus 84 iD~lv~nAg~~~~~~ 98 (248)
T 3op4_A 84 VDILVNNAGITRDNL 98 (248)
T ss_dssp CSEEEECCCCCCCCC
T ss_pred CCEEEECCCCCCCCC
Confidence 899999987655443
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.38 E-value=1.1 Score=38.22 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+...+ .++.++.+|+.++...+.+.... ..++
T Consensus 10 k~vlITG-as~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T 3qiv_A 10 KVGIVTG-SGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEFGG 86 (253)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5666666 4555555555543 36899999999998887777666544 45889999996544332221100 1247
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|++|.|.-+
T Consensus 87 id~li~~Ag~ 96 (253)
T 3qiv_A 87 IDYLVNNAAI 96 (253)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999999765
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.33 E-value=1.1 Score=39.65 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNV-ANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l-~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|= -.|+|.++.++++.+ .+.+|++++.+++.++.+...+...+. ..++.++.+|+.++...+.+.... ..+
T Consensus 27 k~vlV-TGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 105 (297)
T 1xhl_A 27 KSVII-TGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFG 105 (297)
T ss_dssp CEEEE-TTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEE-eCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45554 445666766666643 368999999999887766665554432 115889999996544332211100 124
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+.|++|.|.....
T Consensus 106 ~iD~lvnnAG~~~ 118 (297)
T 1xhl_A 106 KIDILVNNAGANL 118 (297)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCcCc
Confidence 7899999976543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=87.26 E-value=0.99 Score=40.83 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=58.8
Q ss_pred CCeEEEEc-C-chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIG-S-GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg-~-GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+||=.| + |.|..++.+++.. +++|++++.+++.++.+++ +|.. .++ |..+ ...+.+.. .....+
T Consensus 151 g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~-~~~~~~~~-~~~~g~ 218 (346)
T 3fbg_A 151 GKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----MGAD---IVL--NHKE-SLLNQFKT-QGIELV 218 (346)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----HTCS---EEE--CTTS-CHHHHHHH-HTCCCE
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCc---EEE--ECCc-cHHHHHHH-hCCCCc
Confidence 46888883 3 4688888888876 5699999999998888765 4532 111 1100 00111111 123579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+|+-+-. -...+..+.++|+++|.++.
T Consensus 219 Dvv~d~~g--------------------------------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 219 DYVFCTFN--------------------------------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EEEEESSC--------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred cEEEECCC--------------------------------chHHHHHHHHHhccCCEEEE
Confidence 99987421 11456778889999999865
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=87.15 E-value=0.96 Score=38.54 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=66.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+++|=.| |+|.++.++++.+ .+..|+.+|.++. .. ..++.++..|+.++.....+......++.
T Consensus 5 k~vlITG-as~gIG~~~a~~l~~~~g~~v~~~~~~~~-----------~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~i 71 (244)
T 4e4y_A 5 ANYLVTG-GSKGIGKAVVELLLQNKNHTVINIDIQQS-----------FS-AENLKFIKADLTKQQDITNVLDIIKNVSF 71 (244)
T ss_dssp EEEEEET-TTSHHHHHHHHHHTTSTTEEEEEEESSCC-----------CC-CTTEEEEECCTTCHHHHHHHHHHTTTCCE
T ss_pred CeEEEeC-CCChHHHHHHHHHHhcCCcEEEEeccccc-----------cc-cccceEEecCcCCHHHHHHHHHHHHhCCC
Confidence 4555555 5566777776654 3568889887642 11 23578999999665433322111224579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|++|.|.-+........+..+.. +..... .+.-...+++.+...++++|.+++.
T Consensus 72 d~lv~nAg~~~~~~~~~~~~~~~--~~~~~v-----N~~g~~~~~~~~~~~~~~~g~iv~~ 125 (244)
T 4e4y_A 72 DGIFLNAGILIKGSIFDIDIESI--KKVLDL-----NVWSSIYFIKGLENNLKVGASIVFN 125 (244)
T ss_dssp EEEEECCCCCCCBCTTTSCHHHH--HHHHHH-----HTHHHHHHHHHTGGGEEEEEEEEEE
T ss_pred CEEEECCccCCCCCcccCCHHHH--HHHHHH-----ccHHHHHHHHHHHHHhccCcEEEEE
Confidence 99999987655444433333221 110000 0111235666677777778877663
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=86.98 E-value=1.6 Score=37.56 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=53.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC-C
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE-Q 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~-~ 215 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.+++.++.+...+...+ .++.++.+|+.++...+.+.... .. +
T Consensus 10 k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~g 86 (260)
T 2ae2_A 10 CTALVTG-GSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHFHG 86 (260)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5666555 5666666665543 36899999999887776655554443 35888999995544322211000 11 5
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+.|++|.|.-...
T Consensus 87 ~id~lv~~Ag~~~ 99 (260)
T 2ae2_A 87 KLNILVNNAGIVI 99 (260)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7999999976543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=86.80 E-value=0.85 Score=40.40 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=58.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|= -.|+|.++.++++.+ .+++|+.++.++..++.+...+...+ ..++.++.+|+.++...+.+.... ..++
T Consensus 42 k~vlV-TGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 119 (293)
T 3rih_A 42 RSVLV-TGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDAFGA 119 (293)
T ss_dssp CEEEE-TTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEE-eCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 45554 445666666666543 36899999999887776666555443 246899999996544322211100 1257
Q ss_pred eeEEEEcCCCCCCCCCCCCCh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEP 237 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~ 237 (322)
.|++|.|.-......+..+..
T Consensus 120 iD~lvnnAg~~~~~~~~~~~~ 140 (293)
T 3rih_A 120 LDVVCANAGIFPEARLDTMTP 140 (293)
T ss_dssp CCEEEECCCCCCCCCTTTCCH
T ss_pred CCEEEECCCCCCCCCcccCCH
Confidence 899999987665544444443
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.74 E-value=1.8 Score=36.99 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=50.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|= -.|+|.++.++++.+ .+.+|+.++.++..++...+.+ + .++.++.+|+.++...+.+.... ..++
T Consensus 7 k~vlV-TGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 7 KVALV-TGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp CEEEE-TTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CEEEE-eCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45554 445666776666643 3679999999987765544333 2 35889999995544322211100 1246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|++|.|..+...
T Consensus 81 id~lv~~Ag~~~~ 93 (253)
T 1hxh_A 81 LNVLVNNAGILLP 93 (253)
T ss_dssp CCEEEECCCCCCC
T ss_pred CCEEEECCCCCCC
Confidence 8999999765543
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=2.1 Score=37.52 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=53.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe-CCHHHHHHHHHHHH-HcCCCCcEEEEEccCCCcc-------------
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID-QSKHACDLTEQNAV-MHNVANQLQVFHAEIDSKG------------- 203 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD-is~~al~~A~~n~~-~~~l~~~i~~~~~D~~~~~------------- 203 (322)
+++|=. .|+|.++.++++.+ .+.+|+.++ .+++.++.+.+.+. ..+ .++.++..|+.+..
T Consensus 10 k~~lVT-Gas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (291)
T 1e7w_A 10 PVALVT-GAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVATAPVSGADGSAPV 86 (291)
T ss_dssp CEEEET-TCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSCBCCCC----CCCB
T ss_pred CEEEEE-CCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCccccccccccccccc
Confidence 455544 45566666666543 368999999 99888776665554 333 45889999995543
Q ss_pred ----cccccCcCc--CCCCeeEEEEcCCCCCC
Q psy7093 204 ----QVKNLQPDL--LEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 204 ----~~~~l~~~~--~~~~fDlIv~NPPy~~~ 229 (322)
....+.... ..++.|++|.|.-....
T Consensus 87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~ 118 (291)
T 1e7w_A 87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYP 118 (291)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 211110000 12478999999865443
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.47 E-value=1.5 Score=37.70 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=50.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++|=.| |+|.++.++++.+ .+..|+.++.+++.++...+.. + .++.++.+|+.++...+.+.... ..
T Consensus 3 k~~lVTG-as~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 3 KVILVTG-VSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---G--DRFFYVVGDITEDSVLKQLVNAAVKGH 76 (254)
T ss_dssp CEEEECS-TTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---G--GGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CEEEEEC-CCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---C--CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3455444 5566666666543 2478999999988776655443 2 45899999996554332221100 12
Q ss_pred CCeeEEEEcCCCC
Q psy7093 215 QKFDLVVSNPPYV 227 (322)
Q Consensus 215 ~~fDlIv~NPPy~ 227 (322)
++.|++|.|.-+.
T Consensus 77 g~id~lvnnAg~~ 89 (254)
T 3kzv_A 77 GKIDSLVANAGVL 89 (254)
T ss_dssp SCCCEEEEECCCC
T ss_pred CCccEEEECCccc
Confidence 5789999998763
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=0.79 Score=41.64 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=57.5
Q ss_pred CeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+||-.|+ |.|..++.+++..+..+|++++.+++.++.+++. ++.. . + .|..+....+.+.. ...+.+|
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~-~--~d~~~~~~~~~~~~-~~~~~~d 232 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD--A-A--INYKKDNVAEQLRE-SCPAGVD 232 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS--E-E--EETTTSCHHHHHHH-HCTTCEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc--e-E--EecCchHHHHHHHH-hcCCCCC
Confidence 68898886 5677777777775433999999998877766532 3432 1 1 23211100111111 1123799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+++.|-. ...+..+.++|+++|.+++
T Consensus 233 ~vi~~~G---------------------------------~~~~~~~~~~l~~~G~iv~ 258 (357)
T 2zb4_A 233 VYFDNVG---------------------------------GNISDTVISQMNENSHIIL 258 (357)
T ss_dssp EEEESCC---------------------------------HHHHHHHHHTEEEEEEEEE
T ss_pred EEEECCC---------------------------------HHHHHHHHHHhccCcEEEE
Confidence 9998631 0356677889999998875
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.46 E-value=1.8 Score=37.33 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=53.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+.+.+.......++.++.+|+.++...+.+.... ..++
T Consensus 14 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 92 (267)
T 1iy8_A 14 RVVLITG-GGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGR 92 (267)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5666665 4566666555543 368999999998877766655544311235888999996544332211100 1247
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-+.
T Consensus 93 id~lv~nAg~~ 103 (267)
T 1iy8_A 93 IDGFFNNAGIE 103 (267)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEECCCcC
Confidence 89999997654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=86.38 E-value=1.3 Score=38.53 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=50.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+++|+.++.+++.++..... .+ .++.++.+|+.++...+.+.... ..++
T Consensus 28 k~vlVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (266)
T 3grp_A 28 RKALVTG-ATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD---LG--KDVFVFSANLSDRKSIKQLAEVAEREMEG 101 (266)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---HC--SSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 5566554 5566666665543 368999999998876655432 23 45899999996544332221100 1257
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|.-.....
T Consensus 102 iD~lvnnAg~~~~~ 115 (266)
T 3grp_A 102 IDILVNNAGITRDG 115 (266)
T ss_dssp CCEEEECCCCC---
T ss_pred CCEEEECCCCCCCC
Confidence 89999998765443
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=86.31 E-value=1.4 Score=38.66 Aligned_cols=79 Identities=10% Similarity=0.214 Sum_probs=51.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.++..++.+... +..++.++..|+.+......+.... ++.|
T Consensus 17 k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~v~~~~~~~--~~iD 88 (291)
T 3rd5_A 17 RTVVITG-ANSGLGAVTARELARRGATVIMAVRDTRKGEAAART-----MAGQVEVRELDLQDLSSVRRFADGV--SGAD 88 (291)
T ss_dssp CEEEEEC-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT-----SSSEEEEEECCTTCHHHHHHHHHTC--CCEE
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----hcCCeeEEEcCCCCHHHHHHHHHhc--CCCC
Confidence 5666555 5566666666543 368999999998776554422 2356999999996554433322211 5789
Q ss_pred EEEEcCCCC
Q psy7093 219 LVVSNPPYV 227 (322)
Q Consensus 219 lIv~NPPy~ 227 (322)
++|.|.-..
T Consensus 89 ~lv~nAg~~ 97 (291)
T 3rd5_A 89 VLINNAGIM 97 (291)
T ss_dssp EEEECCCCC
T ss_pred EEEECCcCC
Confidence 999997654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=86.17 E-value=0.79 Score=41.49 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
++.+||=.|+ |.|..++.+++.. +++|+++ .+++.++.+++ +|.. . +..+- ...+.+........
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~----lGa~--~--i~~~~---~~~~~~~~~~~~~g 216 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRD----LGAT--P--IDASR---EPEDYAAEHTAGQG 216 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHH----HTSE--E--EETTS---CHHHHHHHHHTTSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHH----cCCC--E--eccCC---CHHHHHHHHhcCCC
Confidence 3478999983 5688888999886 5699999 88887776653 4533 1 22111 00111111112347
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+|+|+-+-. . ..+..+.+.|+++|.+++
T Consensus 217 ~D~vid~~g-----~----------------------------~~~~~~~~~l~~~G~iv~ 244 (343)
T 3gaz_A 217 FDLVYDTLG-----G----------------------------PVLDASFSAVKRFGHVVS 244 (343)
T ss_dssp EEEEEESSC-----T----------------------------HHHHHHHHHEEEEEEEEE
T ss_pred ceEEEECCC-----c----------------------------HHHHHHHHHHhcCCeEEE
Confidence 999987421 0 356677788999999876
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=2.7 Score=37.36 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=59.4
Q ss_pred eEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+||=.|+ |.|.+++.+|+.. +++|++++.+++.++.+++ +|.. ..+-..+. ... ..+..+.+|+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~------~~~-~~~~~~~~d~ 214 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKS----LGAN--RILSRDEF------AES-RPLEKQLWAG 214 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----HTCS--EEEEGGGS------SCC-CSSCCCCEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----cCCC--EEEecCCH------HHH-HhhcCCCccE
Confidence 4888885 6789999999986 4699999999988888764 4543 12222222 111 1123457999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+-+- | ...+..+.++|+++|.++.
T Consensus 215 v~d~~-----------------------------g----~~~~~~~~~~l~~~G~iv~ 239 (324)
T 3nx4_A 215 AIDTV-----------------------------G----DKVLAKVLAQMNYGGCVAA 239 (324)
T ss_dssp EEESS-----------------------------C----HHHHHHHHHTEEEEEEEEE
T ss_pred EEECC-----------------------------C----cHHHHHHHHHHhcCCEEEE
Confidence 87631 1 0366778899999999876
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=86.08 E-value=0.22 Score=45.14 Aligned_cols=42 Identities=10% Similarity=0.161 Sum_probs=32.5
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+| .|..++.+|+..+..+|+++|.+++.++.++
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~ 206 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR 206 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 34789999975 4788888888864338999999988776664
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=86.05 E-value=2.6 Score=36.58 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=53.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.++..++.+.+.+...+ .++.++.+|+.++...+.+... -..+.
T Consensus 23 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 99 (277)
T 2rhc_B 23 EVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYGP 99 (277)
T ss_dssp CEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 5666665 4566666655543 36899999999887776665555444 3588899999654433221110 01257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|.-+..
T Consensus 100 iD~lv~~Ag~~~ 111 (277)
T 2rhc_B 100 VDVLVNNAGRPG 111 (277)
T ss_dssp CSEEEECCCCCC
T ss_pred CCEEEECCCCCC
Confidence 899999976544
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=86.03 E-value=0.77 Score=40.15 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=51.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|+|.++.++++.+ .+++|+.++.+.+.++.+...+ + .++.++.+|+.++.....+.... ..++
T Consensus 29 k~~l-VTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 102 (272)
T 4dyv_A 29 KIAI-VTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---G--DDALCVPTDVTDPDSVRALFTATVEKFGR 102 (272)
T ss_dssp CEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T--SCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4455 5455666666666543 3689999999988776655443 2 45889999996544332221100 1247
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-+.
T Consensus 103 iD~lVnnAg~~ 113 (272)
T 4dyv_A 103 VDVLFNNAGTG 113 (272)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89999997654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=85.93 E-value=1.3 Score=38.69 Aligned_cols=88 Identities=8% Similarity=0.052 Sum_probs=56.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+++|+.++.++..++.+.+.+...+ .++.++.+|+.++.....+... -..++
T Consensus 27 k~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (271)
T 4ibo_A 27 RTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQGID 103 (271)
T ss_dssp CEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 5565544 5566666665543 36899999999988887777666554 3588999999654433221110 01357
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|.-......
T Consensus 104 iD~lv~nAg~~~~~~ 118 (271)
T 4ibo_A 104 VDILVNNAGIQFRKP 118 (271)
T ss_dssp CCEEEECCCCCCCCC
T ss_pred CCEEEECCCCCCCCC
Confidence 899999987654443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=85.89 E-value=2.2 Score=31.18 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=44.5
Q ss_pred CeEEEEcCchhHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKH---FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~---~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
.+|+=+|+ |.++..++.. .+..+|+++|.++..++... . ..+.++..|+.+...+... -..+
T Consensus 6 ~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~-----~~~~ 70 (118)
T 3ic5_A 6 WNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA-----LGGF 70 (118)
T ss_dssp EEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH-----TTTC
T ss_pred CeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH-----HcCC
Confidence 57888887 5555555443 23378999999988766544 1 2367788888432222111 1368
Q ss_pred eEEEEcCCC
Q psy7093 218 DLVVSNPPY 226 (322)
Q Consensus 218 DlIv~NPPy 226 (322)
|+||.+.|+
T Consensus 71 d~vi~~~~~ 79 (118)
T 3ic5_A 71 DAVISAAPF 79 (118)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCCc
Confidence 999998764
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.56 E-value=0.89 Score=39.92 Aligned_cols=85 Identities=12% Similarity=0.158 Sum_probs=54.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc-ccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK-GQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-~~~~~l~~~~--~~~ 215 (322)
++||=.| |+|.++.++++.+ .+.+|++++.+...++.+...+...+ ..++.++..|+.+. .....+.... ..+
T Consensus 13 k~vlITG-as~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g 90 (311)
T 3o26_A 13 RCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTHFG 90 (311)
T ss_dssp CEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred cEEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence 4566444 5566666666543 36899999999988877776665543 24699999999554 2221111100 125
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|++|.|.-..
T Consensus 91 ~iD~lv~nAg~~ 102 (311)
T 3o26_A 91 KLDILVNNAGVA 102 (311)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCccc
Confidence 789999997654
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.49 E-value=1.5 Score=37.68 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=52.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc---CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL---LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~---~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.++..++.+...+...+ .++.++.+|+.++...+.+.... ..+
T Consensus 6 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 82 (260)
T 2qq5_A 6 QVCVVTG-ASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--GQCVPVVCDSSQESEVRSLFEQVDREQQG 82 (260)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--SEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4555444 5666776666643 36899999999888776665554443 35888999996554332221111 035
Q ss_pred CeeEEEEcC
Q psy7093 216 KFDLVVSNP 224 (322)
Q Consensus 216 ~fDlIv~NP 224 (322)
+.|++|.|.
T Consensus 83 ~id~lvnnA 91 (260)
T 2qq5_A 83 RLDVLVNNA 91 (260)
T ss_dssp CCCEEEECC
T ss_pred CceEEEECC
Confidence 789999997
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.44 E-value=2.5 Score=36.58 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=55.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.++..++...+.+...+ .++.++.+|+.++.....+.... ..+.
T Consensus 32 k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 108 (272)
T 1yb1_A 32 EIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIGD 108 (272)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 5666555 5666776666643 36799999999988776666665544 35899999995544322211100 1247
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
+|+||.|..+...
T Consensus 109 iD~li~~Ag~~~~ 121 (272)
T 1yb1_A 109 VSILVNNAGVVYT 121 (272)
T ss_dssp CSEEEECCCCCCC
T ss_pred CcEEEECCCcCCC
Confidence 8999999866543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.43 E-value=2.5 Score=35.81 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=50.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+++||=.| |+|.++.++++.+ .+.+|+.++.++..++...+.+ ..++.+..+|+.+......+.. ..++.
T Consensus 14 ~k~vlVTG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~--~~~~i 85 (249)
T 3f9i_A 14 GKTSLITG-ASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLIS--KTSNL 85 (249)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHH--TCSCC
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHH--hcCCC
Confidence 35677554 5566666666543 3689999999988776655433 2358899999855443322211 12578
Q ss_pred eEEEEcCCCCC
Q psy7093 218 DLVVSNPPYVP 228 (322)
Q Consensus 218 DlIv~NPPy~~ 228 (322)
|++|.|.....
T Consensus 86 d~li~~Ag~~~ 96 (249)
T 3f9i_A 86 DILVCNAGITS 96 (249)
T ss_dssp SEEEECCC---
T ss_pred CEEEECCCCCC
Confidence 99999986554
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=85.36 E-value=1.3 Score=38.33 Aligned_cols=89 Identities=6% Similarity=0.121 Sum_probs=52.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID-QSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD-is~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++| +-.|+|.++.++++.+ .+.+|+.++ .+....+.........+ .++.++..|+.+....+.+.... ..+
T Consensus 26 k~vl-ITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 102 (269)
T 3gk3_A 26 RVAF-VTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADFG 102 (269)
T ss_dssp CEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEE-EECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4455 5556677776666653 367899998 56655555444443333 45899999996544332211100 124
Q ss_pred CeeEEEEcCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~ 232 (322)
+.|++|.|.-+......
T Consensus 103 ~id~li~nAg~~~~~~~ 119 (269)
T 3gk3_A 103 KVDVLINNAGITRDATF 119 (269)
T ss_dssp CCSEEEECCCCCCCBCT
T ss_pred CCCEEEECCCcCCCcch
Confidence 78999999876544433
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=0.73 Score=41.94 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=56.5
Q ss_pred CeEEEEcCc-hhHHH-HHHH-HhCCCCEEEEEeCCHH---HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 141 TRMIEIGSG-TGAIT-ISLL-KHFPKLKAIAIDQSKH---ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~-~~la-~~~~~~~v~~vDis~~---al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
.+||=.|+| .|.++ +.+| +..+..+|+++|.+++ .++.++ .+|.. .+ |..++...+ +.. . .
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~----~lGa~----~v--~~~~~~~~~-i~~-~-~ 240 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE----ELDAT----YV--DSRQTPVED-VPD-V-Y 240 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH----HTTCE----EE--ETTTSCGGG-HHH-H-S
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH----HcCCc----cc--CCCccCHHH-HHH-h-C
Confidence 689999975 47777 8888 7754434999999887 677665 35532 12 321111011 211 1 2
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+.+|+|+-.-. . ...+..+.++|+++|.+++
T Consensus 241 gg~Dvvid~~g-----~---------------------------~~~~~~~~~~l~~~G~iv~ 271 (357)
T 2b5w_A 241 EQMDFIYEATG-----F---------------------------PKHAIQSVQALAPNGVGAL 271 (357)
T ss_dssp CCEEEEEECSC-----C---------------------------HHHHHHHHHHEEEEEEEEE
T ss_pred CCCCEEEECCC-----C---------------------------hHHHHHHHHHHhcCCEEEE
Confidence 37999986311 0 1356677888999998776
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=85.27 E-value=2.3 Score=36.45 Aligned_cols=87 Identities=8% Similarity=0.097 Sum_probs=53.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.++..++.+...+... + .++.++.+|+.++.....+.... ..+
T Consensus 8 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (263)
T 3ai3_A 8 KVAVITG-SSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG--VRVLEVAVDVATPEGVDAVVESVRSSFG 84 (263)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5666555 5566666665543 3679999999988776655544432 3 35888999996544332211100 124
Q ss_pred CeeEEEEcCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSL 230 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~ 230 (322)
+.|++|.|..+....
T Consensus 85 ~id~lv~~Ag~~~~~ 99 (263)
T 3ai3_A 85 GADILVNNAGTGSNE 99 (263)
T ss_dssp SCSEEEECCCCCCCC
T ss_pred CCCEEEECCCCCCCC
Confidence 789999998765433
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.20 E-value=1.9 Score=37.62 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=53.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.+++.++...+.+...+ ++.++.+|+.++...+.+... -..++
T Consensus 30 k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (276)
T 2b4q_A 30 RIALVTG-GSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGELSAR 105 (276)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5666555 5566666665543 36899999999887765554443322 588889999654433221110 01257
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|.-+....
T Consensus 106 iD~lvnnAg~~~~~ 119 (276)
T 2b4q_A 106 LDILVNNAGTSWGA 119 (276)
T ss_dssp CSEEEECCCCCCCC
T ss_pred CCEEEECCCCCCCC
Confidence 89999998655433
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=85.09 E-value=1.1 Score=34.72 Aligned_cols=69 Identities=9% Similarity=0.149 Sum_probs=43.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+|+=+|+| .++..+++.+ .+..|+++|.+++.++.++. .+ +.++.+|..++..+... .-..+|
T Consensus 8 ~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a----~i~~ad 73 (140)
T 3fwz_A 8 NHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA----HLECAK 73 (140)
T ss_dssp SCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT----TGGGCS
T ss_pred CCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc----CcccCC
Confidence 568777775 4444444432 36789999999998876653 23 67788998443322221 124688
Q ss_pred EEEEc
Q psy7093 219 LVVSN 223 (322)
Q Consensus 219 lIv~N 223 (322)
+|++-
T Consensus 74 ~vi~~ 78 (140)
T 3fwz_A 74 WLILT 78 (140)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88873
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=1.2 Score=38.14 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=52.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
++||= -.|+|.++.++++.+ .+.+|++++. ++..++...+.+...+ .++.++.+|+.++.....+.... ..+
T Consensus 8 k~vlI-TGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (261)
T 1gee_A 8 KVVVI-TGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp CEEEE-TTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEE-eCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45654 446677777766643 3679999999 7776666555555443 35888999995543322211000 114
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
.+|++|.|.....
T Consensus 85 ~id~li~~Ag~~~ 97 (261)
T 1gee_A 85 KLDVMINNAGLEN 97 (261)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 6899999976544
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=84.95 E-value=5.7 Score=33.63 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=53.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.++..++...+.+...+ .++.++.+|+.++...+.+.... ..++
T Consensus 14 k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (260)
T 3awd_A 14 RVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQEGR 90 (260)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5666555 5666776666643 36799999999887766555555443 35899999995544332211000 1146
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|..+..
T Consensus 91 id~vi~~Ag~~~ 102 (260)
T 3awd_A 91 VDILVACAGICI 102 (260)
T ss_dssp CCEEEECCCCCC
T ss_pred CCEEEECCCCCC
Confidence 899999876543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=84.93 E-value=0.62 Score=41.25 Aligned_cols=41 Identities=10% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
++.+||-.|+ |.|..++.+++.. +++|++++.+++.++.++
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~ 167 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPL 167 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH
Confidence 3478999997 5688888888886 469999999988777764
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=84.90 E-value=2.6 Score=36.86 Aligned_cols=85 Identities=9% Similarity=0.145 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.++..++.....+... + .++.++.+|+.+......+... ...+
T Consensus 27 k~vlITG-asggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 103 (302)
T 1w6u_A 27 KVAFITG-GGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKVAG 103 (302)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 5566555 5666666666543 3679999999988776665555432 3 3589999999554432221110 0135
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
++|++|.|.....
T Consensus 104 ~id~li~~Ag~~~ 116 (302)
T 1w6u_A 104 HPNIVINNAAGNF 116 (302)
T ss_dssp SCSEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7899999976543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=84.69 E-value=4 Score=34.92 Aligned_cols=86 Identities=9% Similarity=0.149 Sum_probs=52.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.++..++.+.+.+....-..++.++.+|+.++...+.+.... ..+
T Consensus 8 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g- 85 (260)
T 2z1n_A 8 KLAVVTA-GSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG- 85 (260)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC-
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC-
Confidence 5666555 4566666665543 367999999998877665555443210125889999996544332221100 124
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|..+..
T Consensus 86 id~lv~~Ag~~~ 97 (260)
T 2z1n_A 86 ADILVYSTGGPR 97 (260)
T ss_dssp CSEEEECCCCCC
T ss_pred CCEEEECCCCCC
Confidence 899999987544
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=84.46 E-value=1.2 Score=40.50 Aligned_cols=40 Identities=15% Similarity=0.361 Sum_probs=30.0
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCH---HHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSK---HACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~---~al~~A~ 180 (322)
+.+||-.|+| .|..++.+++.. +++|+++|.++ +.++.++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~ 224 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIE 224 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHH
Confidence 4789999984 366677777765 45999999987 6666665
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.32 E-value=1.9 Score=36.50 Aligned_cols=85 Identities=8% Similarity=0.139 Sum_probs=52.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC--CCcccccccCcCc--CC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI--DSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~~~~~~~l~~~~--~~ 214 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.++..++.+...+...+. .++.++..|+ .+......+.... ..
T Consensus 15 k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~d~d~~~~~~~~~~~~~~~~~~ 92 (247)
T 3i1j_A 15 RVILVTG-AARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQ-PQPLIIALNLENATAQQYRELAARVEHEF 92 (247)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTS-CCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-CCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence 5566544 5566666666543 368999999999988887777766553 3467777776 3322111110000 12
Q ss_pred CCeeEEEEcCCCC
Q psy7093 215 QKFDLVVSNPPYV 227 (322)
Q Consensus 215 ~~fDlIv~NPPy~ 227 (322)
++.|++|.|..+.
T Consensus 93 g~id~lv~nAg~~ 105 (247)
T 3i1j_A 93 GRLDGLLHNASII 105 (247)
T ss_dssp SCCSEEEECCCCC
T ss_pred CCCCEEEECCccC
Confidence 4789999998764
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=84.09 E-value=1 Score=39.20 Aligned_cols=88 Identities=13% Similarity=0.085 Sum_probs=50.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHH-------HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHA-------CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~a-------l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~ 211 (322)
+++|=.|++ |.++.++++.+ .+.+|+.++.+... ++.....+...+ .++.++..|+.++...+.+...
T Consensus 7 k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 7 KTLFITGAS-RGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp CEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHHHHH
T ss_pred cEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHH
Confidence 566666655 44555544432 26899999987642 333333343333 4588999999654433222110
Q ss_pred c--CCCCeeEEEEcCCCCCCCC
Q psy7093 212 L--LEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 212 ~--~~~~fDlIv~NPPy~~~~~ 231 (322)
. ..++.|++|.|.-......
T Consensus 84 ~~~~~g~iD~lvnnAG~~~~~~ 105 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAIWLRG 105 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCC
T ss_pred HHHHcCCCCEEEECCCcccCCC
Confidence 0 1257899999987654433
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.95 E-value=2.9 Score=36.52 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=54.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++. +++.++.....+.... ..++.++.+|+.++.....+... -..+
T Consensus 26 k~~lVTGa-s~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 103 (281)
T 3v2h_A 26 KTAVITGS-TSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADRFG 103 (281)
T ss_dssp CEEEEETC-SSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence 56766664 455555555443 3689999998 6666666555554332 34689999999654433222110 0125
Q ss_pred CeeEEEEcCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~ 232 (322)
+.|++|.|.-......+
T Consensus 104 ~iD~lv~nAg~~~~~~~ 120 (281)
T 3v2h_A 104 GADILVNNAGVQFVEKI 120 (281)
T ss_dssp SCSEEEECCCCCCCCCG
T ss_pred CCCEEEECCCCCCCCCc
Confidence 78999999876554433
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=83.79 E-value=1.1 Score=42.19 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=33.7
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.|+ |.|.+++.+|+.. ++++++++.++..++.+++
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~ 271 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRA 271 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHh
Confidence 4478998886 5788889999886 5799999999988887753
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.64 E-value=3 Score=37.37 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=53.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe-CCHHHHHHHHHHHH-HcCCCCcEEEEEccCCCcc-------------
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID-QSKHACDLTEQNAV-MHNVANQLQVFHAEIDSKG------------- 203 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD-is~~al~~A~~n~~-~~~l~~~i~~~~~D~~~~~------------- 203 (322)
+++| +-.|+|.++.++++.+ .+.+|+.++ .++..++.+...+. ..+ .++.++.+|+.+..
T Consensus 47 k~~l-VTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 123 (328)
T 2qhx_A 47 PVAL-VTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVATAPVSGADGSAPV 123 (328)
T ss_dssp CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSCBCC-------CCB
T ss_pred CEEE-EECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC--CeEEEEEeeCCCchhcccccccccccc
Confidence 4555 4556666776666643 368999999 99887776665554 333 45889999995543
Q ss_pred ----cccccCcCc--CCCCeeEEEEcCCCCCC
Q psy7093 204 ----QVKNLQPDL--LEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 204 ----~~~~l~~~~--~~~~fDlIv~NPPy~~~ 229 (322)
....+.... ..+..|++|.|.-....
T Consensus 124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~ 155 (328)
T 2qhx_A 124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYP 155 (328)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 211110000 11478999999865443
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=2.2 Score=36.54 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=49.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+++.++...+.+ ..++.++..|+.++...+.+.... ..++
T Consensus 6 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (254)
T 1hdc_A 6 KTVIITG-GARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp SEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5666555 4555665555543 3689999999987665443222 235888999995544332211000 1247
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|.....
T Consensus 80 iD~lv~nAg~~~ 91 (254)
T 1hdc_A 80 VDGLVNNAGIST 91 (254)
T ss_dssp CCEEEECCCCCC
T ss_pred CCEEEECCCCCC
Confidence 899999976544
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=83.39 E-value=1.1 Score=38.16 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=67.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC------
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAI-DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD------ 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~v-Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~------ 211 (322)
+++|=.| |+|.++.++++.+ .+.+|+.+ ..+....+.....+...+ .++.++..|+.+....+.+...
T Consensus 8 k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (255)
T 3icc_A 8 KVALVTG-ASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNELQ 84 (255)
T ss_dssp CEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence 5566555 4555666655543 36788775 555665655555555444 3588889998543322211100
Q ss_pred --cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 212 --LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 212 --~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
...++.|++|.|..+...........+. ++..... .+.-...+++.+...++++|.+++.
T Consensus 85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~--~~~~~~~-----N~~g~~~l~~~~~~~~~~~~~iv~i 146 (255)
T 3icc_A 85 NRTGSTKFDILINNAGIGPGAFIEETTEQF--FDRMVSV-----NAKAPFFIIQQALSRLRDNSRIINI 146 (255)
T ss_dssp HHHSSSCEEEEEECCCCCCCBCGGGCCHHH--HHHHHHH-----HTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred ccccCCcccEEEECCCCCCCCChhhCCHHH--HHHHHhh-----hchHHHHHHHHHHHhhCCCCEEEEe
Confidence 0123599999998765444333222221 1100000 0111235666777777788887763
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.30 E-value=2.7 Score=36.38 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=51.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHN-VANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|= -.|+|.++.++++.+ .+.+|++++.+++.++.+.+.+.... ...++.++.+|+.++...+.+-... ..+
T Consensus 7 k~vlV-TGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (278)
T 1spx_A 7 KVAII-TGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG 85 (278)
T ss_dssp CEEEE-TTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEE-eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHcC
Confidence 45554 445666666666543 36899999999887776655542211 1235889999996544332211000 124
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
..|++|.|.....
T Consensus 86 ~id~lv~~Ag~~~ 98 (278)
T 1spx_A 86 KLDILVNNAGAAI 98 (278)
T ss_dssp CCCEEEECCC---
T ss_pred CCCEEEECCCCCC
Confidence 7899999976543
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=83.27 E-value=1.4 Score=38.34 Aligned_cols=83 Identities=10% Similarity=0.139 Sum_probs=48.2
Q ss_pred CeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 141 TRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAV-MHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~-~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++|=.|++ +|.++.++++.+ .+.+|+.++.++. .+...+.+. ..+ ++.++.+|+.++.....+.... ..
T Consensus 7 k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 7 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 577777764 266666666543 3679999998875 222222222 222 3678899995544322211100 12
Q ss_pred CCeeEEEEcCCCC
Q psy7093 215 QKFDLVVSNPPYV 227 (322)
Q Consensus 215 ~~fDlIv~NPPy~ 227 (322)
++.|++|.|.-+.
T Consensus 83 g~id~lv~nAg~~ 95 (275)
T 2pd4_A 83 GSLDFIVHSVAFA 95 (275)
T ss_dssp SCEEEEEECCCCC
T ss_pred CCCCEEEECCccC
Confidence 5799999997654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.16 E-value=1.3 Score=40.26 Aligned_cols=93 Identities=6% Similarity=0.044 Sum_probs=54.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHH-------HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHA-------CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~a-------l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~ 211 (322)
+++|=.|+ +|.++.++++.+ .+++|+.++.+... ++.+.+.+...+ .++.++..|+.++...+.+...
T Consensus 46 k~vlVTGa-s~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~ 122 (346)
T 3kvo_A 46 CTVFITGA-SRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAAVEK 122 (346)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHH
T ss_pred CEEEEeCC-ChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHH
Confidence 56665554 455555555543 36899999987653 334444444444 4588999999665433222110
Q ss_pred c--CCCCeeEEEEcCCCCCCCCCCCCC
Q psy7093 212 L--LEQKFDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 212 ~--~~~~fDlIv~NPPy~~~~~~~~l~ 236 (322)
. ..+..|++|.|.-..........+
T Consensus 123 ~~~~~g~iDilVnnAG~~~~~~~~~~~ 149 (346)
T 3kvo_A 123 AIKKFGGIDILVNNASAISLTNTLDTP 149 (346)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCC
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCC
Confidence 0 124789999998766544444333
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=83.08 E-value=18 Score=30.88 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=53.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHc-CCCCcEEEEEccCCCc----ccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMH-NVANQLQVFHAEIDSK----GQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~----~~~~~l~~~~ 212 (322)
+++| +-.|+|.++.++++.+ .+.+|+.++. +++.++.+.+.+... + .++.++.+|+.+. ...+.+....
T Consensus 12 k~~l-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 12 PAAV-ITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA--GSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred CEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC--CceEEEeccCCCccccHHHHHHHHHHH
Confidence 4565 5556677777776654 3689999999 887776665555433 3 3588999999654 3222111000
Q ss_pred --CCCCeeEEEEcCCCCC
Q psy7093 213 --LEQKFDLVVSNPPYVP 228 (322)
Q Consensus 213 --~~~~fDlIv~NPPy~~ 228 (322)
..+..|++|.|.-+..
T Consensus 89 ~~~~g~id~lv~nAg~~~ 106 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASAYY 106 (276)
T ss_dssp HHHHSCCCEEEECCCCCC
T ss_pred HHhcCCCCEEEECCCCCC
Confidence 1246899999976543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 322 | ||||
| d2b3ta1 | 274 | c.66.1.30 (A:2-275) N5-glutamine methyltransferase | 3e-27 | |
| d1nv8a_ | 271 | c.66.1.30 (A:) N5-glutamine methyltransferase, Hem | 1e-25 | |
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 2e-24 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 1e-05 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 4e-05 | |
| d1i4wa_ | 322 | c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake | 7e-05 | |
| d1zq9a1 | 278 | c.66.1.24 (A:36-313) Probable dimethyladenosine tr | 1e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-04 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 6e-04 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 6e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 8e-04 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.002 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 0.002 | |
| d1qyra_ | 252 | c.66.1.24 (A:) High level kasugamycin resistance p | 0.003 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.003 |
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 3e-27
Identities = 68/287 (23%), Positives = 126/287 (43%), Gaps = 22/287 (7%)
Query: 30 LKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECR 89
L+E ++ + ++ P + I ++ H+ + + T+LT++Q L+ L R
Sbjct: 6 LREAISQLQASESPRRDAEI--LLEHVTGRGRTF--ILAFGETQLTDEQCQQLDALLTRR 61
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
P+ ++ F L L ++P IPR +TE L++ L P R++++G+G
Sbjct: 62 RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQA---LARLPEQPCRILDLGTG 118
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TGAI ++L P + IA+D+ A L ++NA + N +
Sbjct: 119 TGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS--------- 169
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
L Q+F ++VSNPPY+ D + ++ +E + AL G+ I I N L
Sbjct: 170 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDV-RFEPLTALVAADSGMADIVHIIEQSRNAL 227
Query: 270 KPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
G + LE + +++ + G VE +D+ + +R
Sbjct: 228 VSGGFLLLEHGWQQGEAVRQAFILAG----YHDVETCRDYGDNERVT 270
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (252), Expect = 1e-25
Identities = 61/291 (20%), Positives = 116/291 (39%), Gaps = 29/291 (9%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +++++ + K E + I++ + K D + K+ ++ + + +L
Sbjct: 3 IWSLIRDCSGKLE-GVTETSVLEVLLIVSRVLGIRKED---LFLKDLGVSPTEEKRILEL 58
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
E R + P+ YI+ E F L+ + VF+PR ET +++ LE + +
Sbjct: 59 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPET---EELVELALELIRKYGIKTVA 115
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
+ F A D S A ++ +NA H V+++ V E +
Sbjct: 116 DIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE 175
Query: 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG 265
K ++++SNPPYV S P+ L+E +AL GG DGL+ +
Sbjct: 176 K-------FASIEMILSNPPYVKSSAHL---PKDVLFEPPEALFGGEDGLDFYREFF--- 222
Query: 266 SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
Y + +E D ++++K+ + KD K RF+
Sbjct: 223 GRYDTSGKIVLMEIGEDQVEELKKI---------VSDTVFLKDSAGKYRFL 264
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.6 bits (242), Expect = 2e-24
Identities = 38/227 (16%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 104 FRDLTLKMTPPVFIPRSETE----ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLK 159
L++ + IP ++ + +S T R I+IG+G I L
Sbjct: 22 DFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGA 81
Query: 160 HFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219
+A + + ++N +N+++ ++V + K + + + E +D
Sbjct: 82 TLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK--VPQKTLLMDALKEESEIIYDF 139
Query: 220 VVSNPPYVPSLDIPKL---------EPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270
+ NPP+ + K P I + L +K I K
Sbjct: 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKK 199
Query: 271 PNGSIFLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
L +KE L I G K+ E + R+
Sbjct: 200 RLRWYSCMLGKKCSLAPLKEELRIQGVP-KVTYTEFCQ--GRTMRWA 243
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 44.4 bits (104), Expect = 1e-05
Identities = 21/180 (11%), Positives = 58/180 (32%), Gaps = 15/180 (8%)
Query: 92 RMPVQYIIKEWNFR---DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGS 148
+ + + T VF + E + + P +++ +
Sbjct: 86 ALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLK----NAVETADRPLKVLNLFG 141
Query: 149 GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL 208
TG ++ + +D SK A ++N V+ + + E D+ ++
Sbjct: 142 YTGVASLVAAAAGAE--VTHVDASKKAIGWAKENQVLAGLEQAPIRWICE-DAMKFIQRE 198
Query: 209 QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY 268
+ +D+++++PP L++ + + + K + + + Y
Sbjct: 199 ERR--GSTYDIILTDPPKFG---RGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 41.3 bits (96), Expect = 4e-05
Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 42/189 (22%)
Query: 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176
+P E+ +I E + +++G GTG +T+ + AID++ A
Sbjct: 13 VPGPTAMEVRCLIMCLAEPGKND--VAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAI 68
Query: 177 DLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE 236
TE N H + + + + D P+
Sbjct: 69 STTEMNLQRHGLGDNVTLMEG---------------------------------DAPEAL 95
Query: 237 PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NHDHLDKIKEWLGICG 295
+I + G + ++ I + LKP G I + + + E L G
Sbjct: 96 CKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLG 151
Query: 296 HHMKLKLVE 304
+ + +
Sbjct: 152 FDVNITELN 160
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.6 bits (97), Expect = 7e-05
Identities = 14/121 (11%), Positives = 36/121 (29%), Gaps = 11/121 (9%)
Query: 123 EELIDIITDKLESSNH----TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178
+ + I DKL+ + +++++ G G + + + +++
Sbjct: 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF 82
Query: 179 TEQNA------VMHNVANQLQVFHAEIDS-KGQVKNLQPDLLEQKFDLVVSNPPYVPSLD 231
++ + ID + V +Q L V+N S
Sbjct: 83 LNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEG 142
Query: 232 I 232
+
Sbjct: 143 L 143
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
+I+ I DK ++E+G GTG +T+ LL+ K+ A +D +
Sbjct: 7 PLIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVACELD--PRLVAELHKR 62
Query: 183 AVMHNVANQLQVFHAEI 199
VA++LQV ++
Sbjct: 63 VQGTPVASKLQVLVGDV 79
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.4 bits (94), Expect = 2e-04
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 123 EELIDIITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
E L + ++D + +++GSG G + + + A DLT
Sbjct: 199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTIL 258
Query: 182 NAVMHNVANQLQVFHAEI----DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEP 237
+L K V N + L + D+++ N ++ D+ K
Sbjct: 259 QYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVN-NFLFDEDLNKKVE 317
Query: 238 EIALY 242
+I
Sbjct: 318 KILQT 322
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 3e-04
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176
I TEE + L TR++++GSG+G + + + + ID S
Sbjct: 13 IHNPFTEEKYATLGRVLRMK--PGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFT 69
Query: 177 DLTEQNAVMHNVANQLQVFH 196
++ A V+ ++ H
Sbjct: 70 AQAKRRAEELGVSERVHFIH 89
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.1 bits (87), Expect = 6e-04
Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 51/229 (22%)
Query: 95 VQYIIKEWNFRDLTLKMTPPVFIPRS---ETEELIDIITDKLESSNHTPTRMIEIGSGTG 151
V+ + + L K VF T+ L++ + ++++G G G
Sbjct: 11 VKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDK------DDDILDLGCGYG 64
Query: 152 AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211
I I+L I++ N D + +L +
Sbjct: 65 VIGIALADEVKSTTMADINRRAI----------KLAKENIKLNNLDNYDIRVVHSDLYEN 114
Query: 212 LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271
+ ++K++ +++NPP G ++ I G LK
Sbjct: 115 VKDRKYNKIITNPPI-------------------------RAGKEVLHRIIEEGKELLKD 149
Query: 272 NGSIFLETNHDH-LDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
NG I++ + +++ + VE R ++ K
Sbjct: 150 NGEIWVVIQTKQGAKSLAKYMKDVFGN-----VETVTI-KGGYRVLKSK 192
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.7 bits (89), Expect = 6e-04
Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 22/144 (15%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++ + TG I + I ID+S A + ++NA ++ V ++++ +
Sbjct: 148 RVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG--SA 204
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+++ LQ +KFD+VV +PP L+ + Y ++
Sbjct: 205 FEEMEKLQKK--GEKFDIVVLDPPA-FVQHEKDLKAGLRAYFNV---------------- 245
Query: 262 CVFGSNYLKPNGSIFLETNHDHLD 285
G N +K G + + H+D
Sbjct: 246 NFAGLNLVKDGGILVTCSCSQHVD 269
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.4 bits (88), Expect = 8e-04
Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 9/187 (4%)
Query: 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178
RS T E + L H R++++ GTG +I L++ + ++
Sbjct: 38 RSRTAEYKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASD--KMLKY 93
Query: 179 TEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP--YVPSLDIPKLE 236
+ + E + + P + ++ ++P + E
Sbjct: 94 ALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSE 152
Query: 237 PEIALYEDIKAL-DGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295
+AL + GG ++ + + P +I+ +++ D L +
Sbjct: 153 HRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTK-DITTSVLTVNN 211
Query: 296 HHMKLKL 302
+ L
Sbjct: 212 KAHMVTL 218
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.001
Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 10/160 (6%)
Query: 34 TAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNK--LCECRLA 91
T ++ +IP+ + +++N + ++T + + + D I L K +L
Sbjct: 36 TIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLN 95
Query: 92 RMPVQYIIKEWNFRDLTLKMTPP-------VFIPRSETEELIDIITDKLESSNHTPT-RM 143
P +++ + +T P F P E D++ ++ T
Sbjct: 96 TRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLF 155
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183
+++GSG G + + + ++++ E
Sbjct: 156 VDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD 195
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.002
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 142 RMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++E GSG+G +++ L K + + I+ + K DL ++N + +L D
Sbjct: 101 TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 160
Query: 201 ----SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251
+ D+ FD V LD+ P + L L G
Sbjct: 161 NVDFIHKDISGATEDIKSLTFDAVA--------LDML--NPHVTLPVFYPHLKHG 205
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 36.4 bits (83), Expect = 0.002
Identities = 23/169 (13%), Positives = 42/169 (24%), Gaps = 27/169 (15%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
IE+G+G G + K P + I I+ K Q N +
Sbjct: 34 IEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI------D 87
Query: 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263
+ + ++ P K L +
Sbjct: 88 ADTLTDVFEPGEVKRVYLNFSDPWPK------------KRHEKRRLTYSHFLKKYE---- 131
Query: 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312
+ GSI +T++ L + L + L + N+
Sbjct: 132 ---EVMGKGGSIHFKTDNRGL--FEYSLKSFSEYGLLLTYVSLDLHNSN 175
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Score = 36.0 bits (82), Expect = 0.003
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175
+ +ID I + M+EIG G A+T + + +L I +D+ A
Sbjct: 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTEPVGERLDQLTVIELDRDLAA 57
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.2 bits (82), Expect = 0.003
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176
++ D I +K +N +++ GTG +T +L F A+ + Q +
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSE 74
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 100.0 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 100.0 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.98 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.86 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.8 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.8 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.77 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.77 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.77 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.73 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.72 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.7 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.7 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.7 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.7 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.69 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.68 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.68 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.67 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.66 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.66 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.65 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.63 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.61 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.6 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.59 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.58 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.58 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.58 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.57 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.57 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.55 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.54 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.53 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.52 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.52 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.51 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.5 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.5 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.49 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.49 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.48 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.48 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.47 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.47 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.47 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.46 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.46 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.45 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.43 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.43 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.42 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.42 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.41 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.41 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.41 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.39 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.39 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.38 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.37 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.36 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.35 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.35 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.34 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.34 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.31 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.3 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 99.26 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.25 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.23 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.22 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.19 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.12 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 99.12 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.12 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 99.08 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 99.06 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.04 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.04 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.03 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.01 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.97 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.93 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 98.93 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.86 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.85 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.84 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.73 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.72 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.7 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.62 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.6 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.51 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.5 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.44 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.13 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.6 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.56 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.45 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.44 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.42 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.31 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 97.16 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.75 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.66 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.53 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.29 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.21 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.1 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.02 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.97 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.96 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.93 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.54 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 95.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.38 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.35 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.28 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.27 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.22 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.16 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.15 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.07 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.05 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.02 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 94.86 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.8 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.8 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.77 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 94.48 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.43 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.35 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.33 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 94.25 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 94.07 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.76 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 93.72 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.7 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.37 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.21 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 93.16 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.96 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 92.86 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.81 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.79 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.71 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 92.7 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 92.68 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.55 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.38 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 92.22 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.12 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.09 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 91.91 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.89 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 91.77 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 91.75 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.73 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.44 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 91.42 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.39 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 90.81 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.75 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.53 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.52 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 90.46 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.8 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 88.73 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 88.01 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 87.99 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.81 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.54 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 86.94 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.8 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.65 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 86.4 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 86.16 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 85.69 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.35 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 84.92 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.89 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 83.14 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.8 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 81.21 |
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-62 Score=436.59 Aligned_cols=272 Identities=24% Similarity=0.413 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeec
Q psy7093 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFR 105 (322)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~ 105 (322)
.+++++++.+.|+++ ++|+.+|++||+|+++.++..++ .+.+.++++++.+++.+++.||.+|+|+|||+|+++||
T Consensus 2 ~~~~l~~~~~~l~~~--~~p~~da~~ll~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~ 77 (274)
T d2b3ta1 2 YQHWLREAISQLQAS--ESPRRDAEILLEHVTGRGRTFIL--AFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFW 77 (274)
T ss_dssp HHHHHHHHHHTTTTS--SCHHHHHHHHHHHHHTCCHHHHH--HTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCEEEET
T ss_pred HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCcCHHHHh--hCCCCCCCHHHHHHHHHHHHHHhcCcChhhhcCcEEEe
Confidence 578899999999754 78999999999999999988776 67888999999999999999999999999999999999
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
|++|.|+++||||||+||.+++.+++..... +.+|||+||||||++++++..+|+++|+++|+|+.|++.|++|+++
T Consensus 78 ~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~---~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~ 154 (274)
T d2b3ta1 78 SLPLFVSPATLIPRPDTECLVEQALARLPEQ---PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH 154 (274)
T ss_dssp TEEEECCTTSCCCCTTHHHHHHHHHHHSCSS---CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred eeEEEEeccccccccchhhhhhhHhhhhccc---ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH
Confidence 9999999999999999999999998876653 3789999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHH
Q psy7093 186 HNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG 265 (322)
Q Consensus 186 ~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~ 265 (322)
+++. +++++++|+ ++.+ ...+||+|||||||++..++..++ ++..|||+.||+||++|+++|+++++.+
T Consensus 155 ~~~~-~v~~~~~d~-----~~~~----~~~~fDlIvsNPPYi~~~~~~~~~-~v~~~eP~~AL~~g~dGl~~~~~i~~~a 223 (274)
T d2b3ta1 155 LAIK-NIHILQSDW-----FSAL----AGQQFAMIVSNPPYIDEQDPHLQQ-GDVRFEPLTALVAADSGMADIVHIIEQS 223 (274)
T ss_dssp HTCC-SEEEECCST-----TGGG----TTCCEEEEEECCCCBCTTCHHHHS-SGGGSSCSTTTBCHHHHTHHHHHHHHHH
T ss_pred hCcc-cceeeeccc-----cccc----CCCceeEEEecchhhhhhhhcccc-cccccchhhhcccccccchHHHHHHHHH
Confidence 9985 599999999 6654 356899999999999998876554 5677999999999999999999999999
Q ss_pred hccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEE
Q psy7093 266 SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319 (322)
Q Consensus 266 ~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~ 319 (322)
.++|+|||.+++|+|+.|.+.+.+++.+.| |..+++++|++|++|||.++
T Consensus 224 ~~~L~~~G~l~lEig~~q~~~v~~~l~~~g----f~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 224 RNALVSGGFLLLEHGWQQGEAVRQAFILAG----YHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp GGGEEEEEEEEEECCSSCHHHHHHHHHHTT----CTTCCEEECTTSSEEEEEEE
T ss_pred HHhcCCCCEEEEEECchHHHHHHHHHHHCC----CCeEEEEECCCCCceEEEEe
Confidence 999999999999999999999999999986 67899999999999999986
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.9e-57 Score=403.99 Aligned_cols=268 Identities=26% Similarity=0.432 Sum_probs=238.7
Q ss_pred cHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceee
Q psy7093 25 VVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNF 104 (322)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f 104 (322)
++.++++.+...|+ ..+++|..++++|++|+++.++..++ .+ +..+++++.+++.++++||.+|+|+|||+|+++|
T Consensus 2 ~i~~l~~~~~~~l~-~~~e~~~lda~lll~~~l~~~~~~l~--~~-~~~l~~~~~~~~~~~i~rR~~~~Pl~YI~g~~~F 77 (271)
T d1nv8a_ 2 KIWSLIRDCSGKLE-GVTETSVLEVLLIVSRVLGIRKEDLF--LK-DLGVSPTEEKRILELVEKRASGYPLHYILGEKEF 77 (271)
T ss_dssp CHHHHHHHHHHHTT-TTCSCHHHHHHHHHHHHHTCCGGGGC--CS-SCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEE
T ss_pred cHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHCcCHHHHh--hC-CCCCCHHHHHHHHHHHHHhhCCCChhhhcCcEEE
Confidence 46788999999996 45889999999999999999987766 34 6789999999999999999999999999999999
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
||++|.|+++||||||+||.+++.+++....... .+++|+|||||++++++++ +|+++|+++|+|+.|+++|++|++
T Consensus 78 ~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~~~--~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~ 154 (271)
T d1nv8a_ 78 MGLSFLVEEGVFVPRPETEELVELALELIRKYGI--KTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAE 154 (271)
T ss_dssp TTEEEECCTTSCCCCTTHHHHHHHHHHHHHHHTC--CEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHH
T ss_pred eeeEEEEecCccCchhhhhhhhhhhhhhhccccc--cEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHH
Confidence 9999999999999999999999999988766532 6899999999999999986 489999999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHH
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
++++.+++.++.+|+ ++.++. ..++||+|||||||++..+ .++.++ .|||+.||+||+||+++|++++.
T Consensus 155 ~~~~~~~~~i~~~~~-----~~~~~~--~~~~fDlIVsNPPYI~~~~--~l~~~~-~~EP~~AL~gg~dGl~~~r~i~~- 223 (271)
T d1nv8a_ 155 RHGVSDRFFVRKGEF-----LEPFKE--KFASIEMILSNPPYVKSSA--HLPKDV-LFEPPEALFGGEDGLDFYREFFG- 223 (271)
T ss_dssp HTTCTTSEEEEESST-----TGGGGG--GTTTCCEEEECCCCBCGGG--SCTTSC-CCSCHHHHBCTTTSCHHHHHHHH-
T ss_pred HcCCCceeEEeeccc-----cccccc--ccCcccEEEEcccccCccc--ccceee-eeccccccccccchHHHHHHHHH-
Confidence 999999999999999 555432 3468999999999998653 455555 59999999999999999999975
Q ss_pred HhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 265 GSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
++|+|||++++|+|++|.+.+.+++.+.+ +++|++|++||+.++|-
T Consensus 224 --~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g---------~~kDl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 224 --RYDTSGKIVLMEIGEDQVEELKKIVSDTV---------FLKDSAGKYRFLLLNRR 269 (271)
T ss_dssp --HCCCTTCEEEEECCTTCHHHHTTTSTTCE---------EEECTTSSEEEEEEECC
T ss_pred --HhcCCCCEEEEEECHHHHHHHHHHHHhCC---------EEeccCCCcEEEEEEEc
Confidence 68999999999999999999998876543 46999999999999884
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=8.8e-32 Score=238.16 Aligned_cols=206 Identities=18% Similarity=0.132 Sum_probs=150.4
Q ss_pred eecCeEEEeCCCCcccCchhHHHHHHHHHHh-cc---CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPRSETEELIDIITDKL-ES---SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178 (322)
Q Consensus 103 ~f~~~~~~v~~~~~iprp~te~lv~~i~~~~-~~---~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~ 178 (322)
+|||++|.+++++++|||+++..+..++..+ .. ......++||+||||||+++.+++++|+++++|+|+|+.|++.
T Consensus 21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~ 100 (250)
T d2h00a1 21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY 100 (250)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHH
Confidence 4899999999999999999877665444433 21 1113368999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEccCCCcccccccCc---CcCCCCeeEEEEcCCCCCCCCCCCC--ChhhhcccccccccCCCC
Q psy7093 179 TEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP---DLLEQKFDLVVSNPPYVPSLDIPKL--EPEIALYEDIKALDGGHD 253 (322)
Q Consensus 179 A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~---~~~~~~fDlIv~NPPy~~~~~~~~l--~~~v~~~ep~~al~~g~~ 253 (322)
|++|++.+++.+++.+++.+. ...+.. ....++||+|||||||++..+.... ......++|..+++++.+
T Consensus 101 A~~N~~~n~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~ 175 (250)
T d2h00a1 101 AKKNVEQNNLSDLIKVVKVPQ-----KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGIT 175 (250)
T ss_dssp HHHHHHHTTCTTTEEEEECCT-----TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTT
T ss_pred HHHHHHHhCCCcceeeeeecc-----HHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccc
Confidence 999999999999999998776 222211 1235689999999999987665443 344566788999888776
Q ss_pred h-------hHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCCCCceeeEEEecCCCCC-CeEEE
Q psy7093 254 G-------LNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFNNK-DRFVE 317 (322)
Q Consensus 254 g-------l~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~-~R~~~ 317 (322)
+ +.+++++++++..++++.|++.+++|. .+.+.+.+++++.| +..+++..+..|+ .|+++
T Consensus 176 el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g----~~~i~~ie~~qG~~~r~ii 244 (250)
T d2h00a1 176 EIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQG----VPKVTYTEFCQGRTMRWAL 244 (250)
T ss_dssp TTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTT----CSEEEEEEEEETTEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcC----CCeEEEEEecCCCEeEEEE
Confidence 5 468999999999999999999999995 67788999998886 6788888888885 46554
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.86 E-value=7.8e-21 Score=161.07 Aligned_cols=167 Identities=21% Similarity=0.370 Sum_probs=123.8
Q ss_pred eEEEeCCCCcccC---chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFIPR---SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~ipr---p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..|...+++|.|. +.|+. +++.+... ++.+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++|+
T Consensus 23 ~~~~t~~gvF~~~~~d~~t~l----Li~~l~~~--~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~ 94 (194)
T d1dusa_ 23 LKFKTDSGVFSYGKVDKGTKI----LVENVVVD--KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENI 94 (194)
T ss_dssp EEEEEETTSTTTTSCCHHHHH----HHHHCCCC--TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHH
T ss_pred EEEEcCCCccCCCCcCHHHHH----HHHhCCcC--CCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHH
Confidence 3567789998753 23343 44455443 3489999999999999999987 468999999999999999999
Q ss_pred HHcCCCC-cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 184 VMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 184 ~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+.+++.+ ++++..+|+ ++.+ .+++||+|++||||+... +....++
T Consensus 95 ~~~~l~~~~i~~~~~d~-----~~~~----~~~~fD~Ii~~~p~~~~~-------------------------~~~~~~l 140 (194)
T d1dusa_ 95 KLNNLDNYDIRVVHSDL-----YENV----KDRKYNKIITNPPIRAGK-------------------------EVLHRII 140 (194)
T ss_dssp HHTTCTTSCEEEEECST-----TTTC----TTSCEEEEEECCCSTTCH-------------------------HHHHHHH
T ss_pred HHhCCccceEEEEEcch-----hhhh----ccCCceEEEEcccEEecc-------------------------hhhhhHH
Confidence 9998864 699999998 5543 457899999999986422 2356899
Q ss_pred HHHhccCccCcEEEEEEcCCCH-HHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 263 VFGSNYLKPNGSIFLETNHDHL-DKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~~~~-~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
+.+.++|+|||.+++++...+. ..+...+++. |..++..... +..+++.++|+
T Consensus 141 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~-----f~~~~~~~~~-~gf~vl~a~K~ 194 (194)
T d1dusa_ 141 EEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-----FGNVETVTIK-GGYRVLKSKKL 194 (194)
T ss_dssp HHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-----HSCCEEEEEE-TTEEEEEEECC
T ss_pred HHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHh-----CCcEEEEEec-CCcEEEEEEEC
Confidence 9999999999999998876664 3445555543 3334444332 45677777763
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=7.3e-20 Score=151.98 Aligned_cols=143 Identities=17% Similarity=0.289 Sum_probs=105.7
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.|..+.+..+ . ||.++.+.+.+.+++...-..+.+|||+|||+|.+++.++++ +++++++|+|+.+++.+++|+
T Consensus 9 ~kg~~l~~~~~-~--Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~ 83 (171)
T d1ws6a1 9 ARGVALKVPAS-A--RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENV 83 (171)
T ss_dssp GTTCEECCCTT-C--CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHH
T ss_pred ccCCEeCCCCC-C--CCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHH
Confidence 67888877554 2 888888878777776643223479999999999999998887 679999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+++.+++....+|. +.... .....+||+|++||||..... ..+..+++
T Consensus 84 ~~~~~~~~v~~~~~d~-----~~~~~-~~~~~~fD~If~DPPY~~~~~------------------------~~l~~l~~ 133 (171)
T d1ws6a1 84 RRTGLGARVVALPVEV-----FLPEA-KAQGERFTVAFMAPPYAMDLA------------------------ALFGELLA 133 (171)
T ss_dssp HHHTCCCEEECSCHHH-----HHHHH-HHTTCCEEEEEECCCTTSCTT------------------------HHHHHHHH
T ss_pred Hhhccccceeeeehhc-----ccccc-cccCCccceeEEccccccCHH------------------------HHHHHHHH
Confidence 9999887666655554 21111 123568999999999964210 11334443
Q ss_pred HHhccCccCcEEEEEEcCCC
Q psy7093 264 FGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~ 283 (322)
..+|+|||++++|+..+.
T Consensus 134 --~~ll~~~g~ivie~~~~~ 151 (171)
T d1ws6a1 134 --SGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp --HTCEEEEEEEEEEEETTS
T ss_pred --cCCcCCCeEEEEEecCCC
Confidence 368999999999986543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.80 E-value=5.8e-19 Score=148.38 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=114.3
Q ss_pred cccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 116 ~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
-+|.|..+++...++..+...+ +.+|||+|||+|.+++.+|.. ..+|+|+|+++.+++.|++|++.+++.++++++
T Consensus 12 ~~~~~t~~eir~~il~~l~~~~--g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~ 87 (186)
T d1l3ia_ 12 SVPGPTAMEVRCLIMCLAEPGK--NDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87 (186)
T ss_dssp TSCCCCCHHHHHHHHHHHCCCT--TCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred CCCCCChHHHHHHHHHhcCCCC--CCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEE
Confidence 3567888999899988887663 489999999999999999886 569999999999999999999999998889999
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
++|+ .+.+. ....||+|+++.++.. +..+++.+.++|||||++
T Consensus 88 ~gda-----~~~~~---~~~~~D~v~~~~~~~~-----------------------------~~~~~~~~~~~LkpgG~l 130 (186)
T d1l3ia_ 88 EGDA-----PEALC---KIPDIDIAVVGGSGGE-----------------------------LQEILRIIKDKLKPGGRI 130 (186)
T ss_dssp ESCH-----HHHHT---TSCCEEEEEESCCTTC-----------------------------HHHHHHHHHHTEEEEEEE
T ss_pred ECch-----hhccc---ccCCcCEEEEeCcccc-----------------------------chHHHHHHHHHhCcCCEE
Confidence 9998 44332 3568999999875422 347889999999999999
Q ss_pred EEEEcC-CCHHHHHHHHHHcCC
Q psy7093 276 FLETNH-DHLDKIKEWLGICGH 296 (322)
Q Consensus 276 ~~e~~~-~~~~~~~~~l~~~~~ 296 (322)
++.... .+...+.+.++..++
T Consensus 131 vi~~~~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 131 IVTAILLETKFEAMECLRDLGF 152 (186)
T ss_dssp EEEECBHHHHHHHHHHHHHTTC
T ss_pred EEEeeccccHHHHHHHHHHcCC
Confidence 876543 445667777887764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.77 E-value=8.3e-19 Score=146.93 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=113.1
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.|..+...++.-+ ||.+..+.+.+.+.+.... .+.+|||+|||||++++.++++ +..+|++||.++.+++.+++|+
T Consensus 8 ~kg~~l~~~~~~~~-RPt~~~vrealFn~l~~~~-~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~ 84 (182)
T d2fhpa1 8 YGGRRLKALDGDNT-RPTTDKVKESIFNMIGPYF-DGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENI 84 (182)
T ss_dssp TTTCBCCCCCCCSS-CCCCHHHHHHHHHHHCSCC-SSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHH
T ss_pred cCCCEecCCCCCCc-CcCcHHHHHHHHHHHHHhc-CCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHh
Confidence 56777766665444 9999999999999886532 3489999999999999999987 4568999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+.++..++++++++|+ ++.+... ....+||+|++||||.... +..++
T Consensus 85 ~~~~~~~~~~i~~~D~-----~~~l~~~~~~~~~fDlIflDPPY~~~~---------------------------~~~~l 132 (182)
T d2fhpa1 85 AITKEPEKFEVRKMDA-----NRALEQFYEEKLQFDLVLLDPPYAKQE---------------------------IVSQL 132 (182)
T ss_dssp HHHTCGGGEEEEESCH-----HHHHHHHHHTTCCEEEEEECCCGGGCC---------------------------HHHHH
T ss_pred hhhhcccccccccccc-----hhhhhhhcccCCCcceEEechhhhhhH---------------------------HHHHH
Confidence 9999888899999998 5544221 1345899999999995322 23444
Q ss_pred HHH--hccCccCcEEEEEEcCC
Q psy7093 263 VFG--SNYLKPNGSIFLETNHD 282 (322)
Q Consensus 263 ~~~--~~~Lk~gG~l~~e~~~~ 282 (322)
..+ ..+|+++|++++|+...
T Consensus 133 ~~i~~~~~L~~~giIi~E~~~~ 154 (182)
T d2fhpa1 133 EKMLERQLLTNEAVIVCETDKT 154 (182)
T ss_dssp HHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHCCCCCCCEEEEEEcCCC
Confidence 444 35799999999998653
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1.8e-18 Score=152.04 Aligned_cols=152 Identities=20% Similarity=0.287 Sum_probs=118.0
Q ss_pred CeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 106 ~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
...+.++|+.-+ ..|.|...++.+.+.... +.+|||+|||||.+++.+++. +.+|+|+|+|+.|++.|++|
T Consensus 88 ~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~----g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~n 161 (254)
T d2nxca1 88 EIPLVIEPGMAFGTGHHETTRLALKALARHLRP----GDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEAN 161 (254)
T ss_dssp SEEEECCCC-----CCSHHHHHHHHHHHHHCCT----TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHH
T ss_pred ceEEEEccccccCccccchhhHHHHHHHhhcCc----cCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHH
Confidence 456777887654 467888888887766543 379999999999999988876 67999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++. +++.++|+ .+.+ +.++||+|++|..+ .....++
T Consensus 162 a~~n~~~--~~~~~~d~-----~~~~----~~~~fD~V~ani~~-----------------------------~~l~~l~ 201 (254)
T d2nxca1 162 AKRNGVR--PRFLEGSL-----EAAL----PFGPFDLLVANLYA-----------------------------ELHAALA 201 (254)
T ss_dssp HHHTTCC--CEEEESCH-----HHHG----GGCCEEEEEEECCH-----------------------------HHHHHHH
T ss_pred HHHcCCc--eeEEeccc-----cccc----cccccchhhhcccc-----------------------------ccHHHHH
Confidence 9999986 57888987 3332 45789999998432 1245788
Q ss_pred HHHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 263 VFGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
+.+.++|||||++++. +-..+.+.+.+.++++| |..++...
T Consensus 202 ~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~G----f~~~~~~~ 243 (254)
T d2nxca1 202 PRYREALVPGGRALLTGILKDRAPLVREAMAGAG----FRPLEEAA 243 (254)
T ss_dssp HHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTT----CEEEEEEE
T ss_pred HHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCC----CEEEEEEE
Confidence 8899999999999883 45678888999999886 56655443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.7e-18 Score=145.22 Aligned_cols=174 Identities=14% Similarity=0.198 Sum_probs=122.1
Q ss_pred EecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHH
Q psy7093 98 IIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACD 177 (322)
Q Consensus 98 i~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~ 177 (322)
+.|. |.|+.+...++.-+ ||.++.+.+.+.+.+...- .+.+|||+|||||++++.++++ +..+|++||.++.+++
T Consensus 6 i~G~--~kg~~l~~~~~~~~-RPt~~~vre~lfn~l~~~~-~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~ 80 (183)
T d2fpoa1 6 IGGQ--WRGRKLPVPDSPGL-RPTTDRVRETLFNWLAPVI-VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQ 80 (183)
T ss_dssp CSGG--GTTCEEECCCC-------CHHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHH
T ss_pred Eecc--cCCCEecCCCCCCc-CcCcHHHHHHHHhhhhccc-chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhh
Confidence 3454 67888888777554 9999999888888775421 2379999999999999998887 4568999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHH
Q psy7093 178 LTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257 (322)
Q Consensus 178 ~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~ 257 (322)
.+++|+..++.. +++++++|+ ++.+.. ...+||+|++||||....
T Consensus 81 ~~k~N~~~~~~~-~~~ii~~d~-----~~~l~~--~~~~fDlIf~DPPY~~~~--------------------------- 125 (183)
T d2fpoa1 81 QLIKNLATLKAG-NARVVNSNA-----MSFLAQ--KGTPHNIVFVDPPFRRGL--------------------------- 125 (183)
T ss_dssp HHHHHHHHTTCC-SEEEECSCH-----HHHHSS--CCCCEEEEEECCSSSTTT---------------------------
T ss_pred HHHHHHhhcccc-ceeeeeecc-----cccccc--cccccCEEEEcCccccch---------------------------
Confidence 999999988875 489999998 665542 456899999999996421
Q ss_pred HHHHHHHH--hccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 258 IKPICVFG--SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 258 ~~~~l~~~--~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
+..++..+ ..+|+++|++++|+..... +.... .+|..++. --+|.-.+...+|.
T Consensus 126 ~~~~l~~l~~~~~L~~~~iIiiE~~~~~~------~~~~~--~~~~i~k~--k~yG~t~i~~~~k~ 181 (183)
T d2fpoa1 126 LEETINLLEDNGWLADEALIYVESEVENG------LPTVP--ANWSLHRE--KVAGQVAYRLYQRE 181 (183)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEGGGC------SCCCC--TTEEEEEE--EEETTEEEEEEEEC
T ss_pred HHHHHHHHHHCCCCCCCeEEEEEecCcCC------cccCC--CCcEEEEE--EEeCcEEEEEEEEc
Confidence 23344444 3579999999999864321 00110 13444332 25688877777764
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.73 E-value=5e-18 Score=138.06 Aligned_cols=119 Identities=20% Similarity=0.366 Sum_probs=92.7
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+.+.+... ..+.+|||+|||||.+++.++.+ +..+|+++|.++.+++.+++|+..+++.++++++++|+ ...
T Consensus 4 ~~fn~l~~~-~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~-----~~~ 76 (152)
T d2esra1 4 AIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA-----ERA 76 (152)
T ss_dssp HHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH-----HHH
T ss_pred HHHHHHHhh-CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccc-----ccc
Confidence 344555442 13479999999999999998887 45699999999999999999999999999999999998 544
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHH--hccCccCcEEEEEEcCC
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG--SNYLKPNGSIFLETNHD 282 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~--~~~Lk~gG~l~~e~~~~ 282 (322)
+. ...++||+|++||||... .+...+..+ .++|+|+|.+++|+...
T Consensus 77 l~--~~~~~fDiIf~DPPy~~~---------------------------~~~~~l~~i~~~~~L~~~g~iiiE~~~~ 124 (152)
T d2esra1 77 ID--CLTGRFDLVFLDPPYAKE---------------------------TIVATIEALAAKNLLSEQVMVVCETDKT 124 (152)
T ss_dssp HH--HBCSCEEEEEECCSSHHH---------------------------HHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cc--ccccccceeEechhhccc---------------------------hHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence 43 245789999999999521 123344433 46899999999998654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.72 E-value=1.3e-17 Score=139.62 Aligned_cols=148 Identities=19% Similarity=0.284 Sum_probs=107.7
Q ss_pred EecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHH
Q psy7093 98 IIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACD 177 (322)
Q Consensus 98 i~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~ 177 (322)
+.|. |.|+.+.+.++..+ ||.++.+.+.+.+.+...- .+.+|||++||||++++.++++ +..+|+.||.+..+++
T Consensus 6 i~G~--~kg~~l~~~~~~~~-RPt~~~vrealFn~l~~~~-~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~ 80 (183)
T d2ifta1 6 IAGL--WRGRKLPVLNSEGL-RPTGDRVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVAN 80 (183)
T ss_dssp CSST--TTTCEEECC----------CHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHH
T ss_pred Eccc--cCCCEecCCCCCCc-CcCcHHHHHHHHHHhhhhc-ccceEeecccCccceeeeeeee-cceeeEEeecccchhh
Confidence 4455 67888887776554 9999999999988886421 2379999999999999999988 5669999999999999
Q ss_pred HHHHHHHHcCCCC-cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhH
Q psy7093 178 LTEQNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256 (322)
Q Consensus 178 ~A~~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~ 256 (322)
..++|++.++..+ ...++..|+ ++.+.......+||+|++||||...
T Consensus 81 ~ik~Ni~~l~~~~~~~~~~~~d~-----~~~l~~~~~~~~fDlIFlDPPY~~~--------------------------- 128 (183)
T d2ifta1 81 QLKKNLQTLKCSSEQAEVINQSS-----LDFLKQPQNQPHFDVVFLDPPFHFN--------------------------- 128 (183)
T ss_dssp HHHHHHHHTTCCTTTEEEECSCH-----HHHTTSCCSSCCEEEEEECCCSSSC---------------------------
T ss_pred hHhhHHhhhcccccccccccccc-----cccccccccCCcccEEEechhHhhh---------------------------
Confidence 9999999998754 567777776 4444332334579999999999641
Q ss_pred HHHHHHHHHh--ccCccCcEEEEEEcCC
Q psy7093 257 IIKPICVFGS--NYLKPNGSIFLETNHD 282 (322)
Q Consensus 257 ~~~~~l~~~~--~~Lk~gG~l~~e~~~~ 282 (322)
.+..++.... .+|+++|++++|+...
T Consensus 129 ~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 129 LAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred hHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 1334555443 5899999999999764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.70 E-value=8.7e-17 Score=144.27 Aligned_cols=166 Identities=13% Similarity=0.178 Sum_probs=118.8
Q ss_pred ecCeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 104 f~~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.|++|.+.+..+- .-++......++.+.+.... ++.+|||+|||||.+++.++.. +++|++||.|+.+++.|+
T Consensus 95 e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~~~-~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~ 171 (309)
T d2igta1 95 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETAD-RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAK 171 (309)
T ss_dssp ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSS-SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHH
T ss_pred EeEEEEEEeccCCCccccccchhHHHHHHHHHHhhcc-CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHH
Confidence 47899998875443 23566666777666655432 3479999999999999999887 679999999999999999
Q ss_pred HHHHHcCCCC-cEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH
Q psy7093 181 QNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258 (322)
Q Consensus 181 ~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~ 258 (322)
+|+..+++.+ +++++++|+ ++.+... ....+||+||+|||+.......... . .-+.+
T Consensus 172 ~N~~ln~~~~~~~~~i~~D~-----~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~-~---------------~~~~~ 230 (309)
T d2igta1 172 ENQVLAGLEQAPIRWICEDA-----MKFIQREERRGSTYDIILTDPPKFGRGTHGEVW-Q---------------LFDHL 230 (309)
T ss_dssp HHHHHHTCTTSCEEEECSCH-----HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEE-E---------------HHHHH
T ss_pred HhhhhhcccCCcEEEEeCCH-----HHhHHHHhhcCCCCCEEEECCCcccccccchhH-H---------------HHHHH
Confidence 9999998865 699999999 6654321 1346899999999976433221110 0 01234
Q ss_pred HHHHHHHhccCccCcEEEEEEcCC---CHHHHHHHHHH
Q psy7093 259 KPICVFGSNYLKPNGSIFLETNHD---HLDKIKEWLGI 293 (322)
Q Consensus 259 ~~~l~~~~~~Lk~gG~l~~e~~~~---~~~~~~~~l~~ 293 (322)
..++..+..+|+|||.+++.+.+. ....+.+++.+
T Consensus 231 ~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~ 268 (309)
T d2igta1 231 PLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRE 268 (309)
T ss_dssp HHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 578888999999999766555432 35556666554
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=3.7e-17 Score=148.87 Aligned_cols=137 Identities=19% Similarity=0.239 Sum_probs=105.8
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
.++......++.+.+.. +.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|++.+|+.++++++++|
T Consensus 129 flDqr~~r~~~~~~~~~----g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d 203 (324)
T d2as0a2 129 FLDQRENRLALEKWVQP----GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS 203 (324)
T ss_dssp CSTTHHHHHHHGGGCCT----TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred ccchhhHHHHHHhhcCC----CCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeech
Confidence 44666655666554432 379999999999999999987 4568999999999999999999999998889999999
Q ss_pred CCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 199 IDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 199 ~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+ ++.+... ....+||+|++|||+....... ...+...|.+++..+.++|+|||++++
T Consensus 204 ~-----~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~-----------------~~~~~~~y~~l~~~a~~ll~pGG~lv~ 261 (324)
T d2as0a2 204 A-----FEEMEKLQKKGEKFDIVVLDPPAFVQHEKD-----------------LKAGLRAYFNVNFAGLNLVKDGGILVT 261 (324)
T ss_dssp H-----HHHHHHHHHTTCCEEEEEECCCCSCSSGGG-----------------HHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred h-----hhhhHHHHhccCCCCchhcCCccccCCHHH-----------------HHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 8 5443211 1346899999999987543210 112445688999999999999999988
Q ss_pred EEcCC
Q psy7093 278 ETNHD 282 (322)
Q Consensus 278 e~~~~ 282 (322)
..+..
T Consensus 262 ~s~s~ 266 (324)
T d2as0a2 262 CSCSQ 266 (324)
T ss_dssp EECCT
T ss_pred EeCCc
Confidence 76543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=6.4e-16 Score=136.13 Aligned_cols=166 Identities=13% Similarity=0.142 Sum_probs=117.7
Q ss_pred cCeEEEeCCC--CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPP--VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~--~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|.+++. .|.|+..++. ..+.+.+.. +.+|||+|||+|.+++.+|+. +.++|+++|+|+.+++.+++|
T Consensus 77 ~g~~~~~d~~~~~f~~~~~~er--~ri~~~~~~----g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N 149 (260)
T d2frna1 77 NGIKYKLDVAKIMFSPANVKER--VRMAKVAKP----DELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVEN 149 (260)
T ss_dssp TTEEEEEETTTSCCCGGGHHHH--HHHHHHCCT----TCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHH
T ss_pred cCeeEEeccccccEecCCHHHH--HHHHhhcCC----ccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHH
Confidence 4667777654 5556655553 344454443 379999999999999999987 567999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.++++++++|+ .+.. ..+.||.|++|||.... .++
T Consensus 150 ~~~n~l~~~v~~~~~D~-----~~~~----~~~~~D~Ii~~~p~~~~------------------------------~~l 190 (260)
T d2frna1 150 IHLNKVEDRMSAYNMDN-----RDFP----GENIADRILMGYVVRTH------------------------------EFI 190 (260)
T ss_dssp HHHTTCTTTEEEECSCT-----TTCC----CCSCEEEEEECCCSSGG------------------------------GGH
T ss_pred HHHhCCCceEEEEEcch-----HHhc----cCCCCCEEEECCCCchH------------------------------HHH
Confidence 99999999999999999 4432 35789999999986431 356
Q ss_pred HHHhccCccCcEEEEE-Ec------CCCHHHHHHHHHHcCCCCceeeEEEecCCC-CCCeEE
Q psy7093 263 VFGSNYLKPNGSIFLE-TN------HDHLDKIKEWLGICGHHMKLKLVENYKDFN-NKDRFV 316 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e-~~------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~-g~~R~~ 316 (322)
..+.+.|++||++.+. +. ....+.+.++....|.......+...++.+ +..+++
T Consensus 191 ~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~~~~Vk~yaP~~~~v~ 252 (260)
T d2frna1 191 PKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVWHVV 252 (260)
T ss_dssp HHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEEEEEEECcCCCccEEE
Confidence 6788899999998552 11 223566777777776411111223445665 444444
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.1e-16 Score=139.67 Aligned_cols=123 Identities=18% Similarity=0.233 Sum_probs=100.4
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
.|-++..++.+.+.+.-.+ +.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++.++++++++|
T Consensus 15 ~p~~~~~~~~l~~~~~l~p--g~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d 91 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKP--GTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND 91 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCT--TCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred CCCCHHHHHHHHHHcCCCC--CCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhH
Confidence 3567778888888877653 3899999999999999999875 479999999999999999999999999999999999
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+ .+. ...++||+|+|.--.....+ ...+++++.++|||||.+++.
T Consensus 92 ~-----~~~----~~~~~fD~v~~~~~~~~~~d--------------------------~~~~l~~~~r~LkPGG~l~i~ 136 (245)
T d1nkva_ 92 A-----AGY----VANEKCDVAACVGATWIAGG--------------------------FAGAEELLAQSLKPGGIMLIG 136 (245)
T ss_dssp C-----TTC----CCSSCEEEEEEESCGGGTSS--------------------------SHHHHHHHTTSEEEEEEEEEE
T ss_pred H-----hhc----cccCceeEEEEEehhhccCC--------------------------HHHHHHHHHHHcCcCcEEEEE
Confidence 8 332 24678999999543322221 247999999999999999885
Q ss_pred E
Q psy7093 279 T 279 (322)
Q Consensus 279 ~ 279 (322)
.
T Consensus 137 ~ 137 (245)
T d1nkva_ 137 E 137 (245)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.69 E-value=6.7e-16 Score=134.65 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+..++.+.+.+.....++.+|||+|||+|.++..+++. +.+|+|+|.|+.+++.|++++...++ +++++++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~--- 93 (246)
T d1y8ca_ 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDI--- 93 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCG---
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc--cceeeccch---
Confidence 34455555555544334579999999999999999998 57899999999999999999888775 389999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ..++||+|+|.-- .+..+.. .+-..++++.+.++|+|||.+++++
T Consensus 94 --~~-~~---~~~~fD~i~~~~~-----~~~~~~~-----------------~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 94 --SN-LN---INRKFDLITCCLD-----STNYIID-----------------SDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp --GG-CC---CSCCEEEEEECTT-----GGGGCCS-----------------HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --hh-hc---ccccccccceeee-----eeeccCC-----------------HHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 32 22 2468999998210 0111100 0124579999999999999998754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.68 E-value=7e-16 Score=132.83 Aligned_cols=112 Identities=11% Similarity=0.183 Sum_probs=88.9
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++...-.+ +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++..+.+ +++++++|+ ..
T Consensus 6 ~ll~~~~l~~--~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~------~~ 74 (231)
T d1vl5a_ 6 KLMQIAALKG--NEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDA------EQ 74 (231)
T ss_dssp HHHHHHTCCS--CCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-------C
T ss_pred HHHHhcCCCC--cCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhcccccccc-ccccccccc------cc
Confidence 4455555443 379999999999999999988 568999999999999999999988865 599999998 33
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
++ ++.++||+|+|+--+....+ ...+++++.++|||||++++.
T Consensus 75 l~--~~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 75 MP--FTDERFHIVTCRIAAHHFPN--------------------------PASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp CC--SCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cc--ccccccccccccccccccCC--------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 33 35689999999654433222 357899999999999988874
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.68 E-value=3.7e-16 Score=141.43 Aligned_cols=160 Identities=11% Similarity=0.138 Sum_probs=113.0
Q ss_pred cCeEEEeCCCCcc-c--CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFI-P--RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 105 ~~~~~~v~~~~~i-p--rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.|..|.++..... + -.+......++...+.. +.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++
T Consensus 111 ~Gl~f~vdl~~g~ktGlflDqR~~r~~l~~~~~~----g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~ 185 (317)
T d2b78a2 111 NGISYNVFLNDGLMTGIFLDQRQVRNELINGSAA----GKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLA 185 (317)
T ss_dssp TTEEEEECSSSSSCCSSCGGGHHHHHHHHHTTTB----TCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHH
T ss_pred CCEEEEEEcccccccCCcHHHHHHHHHHHHHhhC----CCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHH
Confidence 4788888765321 0 13444444444444433 379999999999999988875 45589999999999999999
Q ss_pred HHHHcCCC-CcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH
Q psy7093 182 NAVMHNVA-NQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259 (322)
Q Consensus 182 n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~ 259 (322)
|++.+++. ++++++++|+ ++.+... ....+||+||+|||........ -..+...|.
T Consensus 186 N~~~n~l~~~~~~~i~~d~-----~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~-----------------~~~~~~~~~ 243 (317)
T d2b78a2 186 HFEANHLDMANHQLVVMDV-----FDYFKYARRHHLTYDIIIIDPPSFARNKKE-----------------VFSVSKDYH 243 (317)
T ss_dssp HHHHTTCCCTTEEEEESCH-----HHHHHHHHHTTCCEEEEEECCCCC-----C-----------------CCCHHHHHH
T ss_pred HHHHhcccCcceEEEEccH-----HHHHHHHHhhcCCCCEEEEcChhhccchhH-----------------HHHHHHHHH
Confidence 99999985 5799999999 6654321 1346899999999966433211 113445688
Q ss_pred HHHHHHhccCccCcEEEEEEcCC--CHHHHHHHH
Q psy7093 260 PICVFGSNYLKPNGSIFLETNHD--HLDKIKEWL 291 (322)
Q Consensus 260 ~~l~~~~~~Lk~gG~l~~e~~~~--~~~~~~~~l 291 (322)
.+++.+.++|+|||++++.++.. ..+...+++
T Consensus 244 ~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v 277 (317)
T d2b78a2 244 KLIRQGLEILSENGLIIASTNAANMTVSQFKKQI 277 (317)
T ss_dssp HHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHH
Confidence 99999999999999999977653 344444444
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.67 E-value=1.2e-15 Score=135.98 Aligned_cols=105 Identities=15% Similarity=0.275 Sum_probs=87.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||+|.++..++++. +++|+|+|+|+.+++.|+++....++.++++++++|+ . .++ ++.++||
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-----~-~l~--~~~~sfD 137 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-----L-EIP--CEDNSYD 137 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-----T-SCS--SCTTCEE
T ss_pred CCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccc-----c-ccc--ccccccc
Confidence 34799999999999999999874 6799999999999999999999999988999999998 2 333 3568999
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|++.-.+....+ ...+++++.++|||||.+++.
T Consensus 138 ~V~~~~~l~h~~d--------------------------~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 138 FIWSQDAFLHSPD--------------------------KLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp EEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhccchhhhccC--------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 9999644322211 347899999999999998884
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=8.2e-16 Score=133.14 Aligned_cols=114 Identities=17% Similarity=0.299 Sum_probs=90.8
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
.+.+++...-++ +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++...++. ++.++++|+ .
T Consensus 5 ~~~l~~~~~~~~--~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~-----~ 74 (234)
T d1xxla_ 5 LGLMIKTAECRA--EHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTA-----E 74 (234)
T ss_dssp HHHHHHHHTCCT--TCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBT-----T
T ss_pred HHHHHHHhCCCC--CCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhcccccc-ccccccccc-----c
Confidence 345666666553 389999999999999999998 468999999999999999999988875 499999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.++ +++++||+|+|+-......+ ...+++++.++|||||++++.
T Consensus 75 -~~~--~~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 75 -SLP--FPDDSFDIITCRYAAHHFSD--------------------------VRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp -BCC--SCTTCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred -ccc--ccccccceeeeeceeecccC--------------------------HHHHHHHHHHeeCCCcEEEEE
Confidence 233 45789999999644332221 347999999999999988773
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=2.3e-16 Score=143.74 Aligned_cols=160 Identities=18% Similarity=0.231 Sum_probs=115.9
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCC
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSKHACDLTEQNAVMHNVA 189 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~~al~~A~~n~~~~~l~ 189 (322)
+++||+.++.+++.+........ +.+|+|+|||+|+++++++.++ +..+++|+|+++.+++.|+.|+..++..
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~~~~--~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~ 172 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQKKK--NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK 172 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCS--EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred EECcHHHHHHHHHHHHHHhCCCC--CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh
Confidence 56799999888877766665542 3689999999999999987643 3458999999999999999999888754
Q ss_pred CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC
Q psy7093 190 NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269 (322)
Q Consensus 190 ~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L 269 (322)
..+.++|. +... ...+||+||+||||..... .+...... ........+.+..++..+.++|
T Consensus 173 --~~~~~~d~-----~~~~----~~~~fD~vi~NPPy~~~~~-----~~~~~~~~---~~~~~~~~~~~~~Fi~~~~~~L 233 (328)
T d2f8la1 173 --MTLLHQDG-----LANL----LVDPVDVVISDLPVGYYPD-----DENAKTFE---LCREEGHSFAHFLFIEQGMRYT 233 (328)
T ss_dssp --CEEEESCT-----TSCC----CCCCEEEEEEECCCSEESC-----HHHHTTST---TCCSSSCEEHHHHHHHHHHHTE
T ss_pred --hhhhcccc-----cccc----ccccccccccCCCCCCCcc-----chhhhhcc---hhcccCcchHHHHHHHHHHHhc
Confidence 67778887 4332 4578999999999965322 11111111 1111122345677999999999
Q ss_pred ccCcEEEEEEcC-----CCHHHHHHHHHHcC
Q psy7093 270 KPNGSIFLETNH-----DHLDKIKEWLGICG 295 (322)
Q Consensus 270 k~gG~l~~e~~~-----~~~~~~~~~l~~~~ 295 (322)
+|||.+++.++. .....+++.+.+++
T Consensus 234 k~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 234 KPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG 264 (328)
T ss_dssp EEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred CCCCceEEEecCccccCchhHHHHHHHHhCC
Confidence 999999887753 45677888877764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2.6e-16 Score=142.68 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=94.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fD 218 (322)
+.+|||+|||+|.+++++|.. +.+|+++|+|+.+++.|++|++.+++. +++++++|+ ++.+... ...++||
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~-----~~~~~~~~~~~~~fD 217 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANA-----FDLLRRLEKEGERFD 217 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCH-----HHHHHHHHHTTCCEE
T ss_pred CCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccH-----HHHhhhhHhhhcCCC
Confidence 379999999999999998865 789999999999999999999999986 499999998 5432211 1356899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+|++|||+....... + ..+...|..++..+.++|+|||.+++.++..
T Consensus 218 ~Vi~DpP~~~~~~~~-----~------------~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 218 LVVLDPPAFAKGKKD-----V------------ERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp EEEECCCCSCCSTTS-----H------------HHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEEcCCccccchHH-----H------------HHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999999987544211 0 1234558899999999999999999877653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.65 E-value=1.6e-15 Score=130.51 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=83.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|||+|||+|..+..+++.. |+.+|+|+|+|+.+++.|+++++..+...++.+..+|. .+ ++...+
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~-----~~-----~~~~~~ 109 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI-----RH-----VEIKNA 109 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT-----TT-----CCCCSE
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh-----hc-----cccccc
Confidence 3799999999999999999864 78899999999999999999998888777788888887 22 245678
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+|+++--.+. ++.+- ..++++++.++|||||.+++.
T Consensus 110 d~i~~~~~l~~------~~~~d------------------~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 110 SMVILNFTLQF------LPPED------------------RIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp EEEEEESCGGG------SCGGG------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeEEeeeccc------cChhh------------------HHHHHHHHHHhCCCCceeecc
Confidence 99999633221 11111 358999999999999998874
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.63 E-value=1.4e-15 Score=132.89 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=97.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|||+|||||.++..+|+.. |..+|+++|.++++++.|++|++.++..+++++.++|+ .+.+ .+..|
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di-----~~~~----~~~~f 155 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI-----ADFI----SDQMY 155 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT-----TTCC----CSCCE
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee-----eccc----cccee
Confidence 45899999999999999999874 67899999999999999999999876667799999998 4332 45789
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGH 296 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~ 296 (322)
|.|++|.|-. ..+++.+.+.|||||.+++-... .|.+.+.+.+++.|
T Consensus 156 D~V~ld~p~p-------------------------------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~g- 203 (250)
T d1yb2a1 156 DAVIADIPDP-------------------------------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASG- 203 (250)
T ss_dssp EEEEECCSCG-------------------------------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGT-
T ss_pred eeeeecCCch-------------------------------HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCC-
Confidence 9999986621 14678899999999999886654 55566666666665
Q ss_pred CCceeeEE
Q psy7093 297 HMKLKLVE 304 (322)
Q Consensus 297 ~~~~~~v~ 304 (322)
|..++
T Consensus 204 ---f~~i~ 208 (250)
T d1yb2a1 204 ---MHHLE 208 (250)
T ss_dssp ---EEEEE
T ss_pred ---CceeE
Confidence 65544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=3.1e-15 Score=130.31 Aligned_cols=106 Identities=17% Similarity=0.323 Sum_probs=82.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++++|+ ..++ ..++||+
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~------~~l~---~~~~fD~ 108 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDV------LEIA---FKNEFDA 108 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCG------GGCC---CCSCEEE
T ss_pred CCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc--cchheehhh------hhcc---cccccch
Confidence 378999999999999999987 67999999999999999999988775 499999998 3333 2468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|+|.- .....+..+ -...+++++.++|||||++++.+..
T Consensus 109 I~~~~-----~~~~~~~~~------------------~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 109 VTMFF-----STIMYFDEE------------------DLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEECS-----SGGGGSCHH------------------HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Hhhhh-----hhhhcCChH------------------HHHHHHHHHHHHcCCCcEEEEEecc
Confidence 99831 111111111 1458999999999999999987643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=4.8e-15 Score=126.62 Aligned_cols=106 Identities=15% Similarity=0.291 Sum_probs=83.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ++.++++|+ ..++ ++.++||+
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~------~~l~--~~~~~fD~ 105 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDA------RKLS--FEDKTFDY 105 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCT------TSCC--SCTTCEEE
T ss_pred CCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc--ccccccccc------cccc--ccCcCceE
Confidence 379999999999999999986 68999999999999999999887764 378888988 2332 35688999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|+|+--+ ..++.. -..++++.+.++|||||.+++.+..
T Consensus 106 I~~~~~l------~~~~~~------------------d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 106 VIFIDSI------VHFEPL------------------ELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEESCG------GGCCHH------------------HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEecch------hhCChh------------------HHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9995322 122111 1457899999999999999887643
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.60 E-value=9.7e-15 Score=123.86 Aligned_cols=130 Identities=19% Similarity=0.198 Sum_probs=98.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..|||+|||+|..++.+|+.+|+..++|+|+++.++..|.+++...+++| +.++++|+ .. +...++...+|.|
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da-----~~-l~~~~~~~~~~~i 105 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDG-----SD-LTDYFEDGEIDRL 105 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCS-----SC-GGGTSCTTCCSEE
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCH-----HH-HhhhccCCceehh
Confidence 68999999999999999999999999999999999999999999999875 99999998 32 3334567889999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHHHHHcC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEWLGICG 295 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~~~ 295 (322)
++|-|-......+. ... + +...+++.+.++|||||.+++-+... ....+.+.+...+
T Consensus 106 ~i~fPdPw~K~~h~--------krR--l--------~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~ 163 (204)
T d1yzha1 106 YLNFSDPWPKKRHE--------KRR--L--------TYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYG 163 (204)
T ss_dssp EEESCCCCCSGGGG--------GGS--T--------TSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cccccccccchhhh--------hhh--h--------hHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCC
Confidence 88766443332110 000 0 12478999999999999998876432 2344445555554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=9.2e-15 Score=128.96 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=105.6
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
..++..+.-. ++.+|||+|||||.++..+|+.. |..+|+++|+++++++.|++|++..++.+++.+...|+ .
T Consensus 93 ~~Ii~~l~i~--pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-----~ 165 (266)
T d1o54a_ 93 SFIAMMLDVK--EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-----S 165 (266)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-----G
T ss_pred HHHHHhhCCC--CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-----c
Confidence 3455555554 34899999999999999999986 67899999999999999999999999988899999987 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCH
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHL 284 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~ 284 (322)
.. +....||.|+.+.|- | ..+++.+.++|||||.+++-+. ..|.
T Consensus 166 ~~----~~~~~~D~V~~d~p~-----------------p--------------~~~l~~~~~~LKpGG~lv~~~P~~~Qv 210 (266)
T d1o54a_ 166 EG----FDEKDVDALFLDVPD-----------------P--------------WNYIDKCWEALKGGGRFATVCPTTNQV 210 (266)
T ss_dssp GC----CSCCSEEEEEECCSC-----------------G--------------GGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred cc----ccccceeeeEecCCC-----------------H--------------HHHHHHHHhhcCCCCEEEEEeCcccHH
Confidence 33 245679999987551 1 1577889999999999987554 3566
Q ss_pred HHHHHHHHHcCCCCceeeEEEe
Q psy7093 285 DKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+.+.+.+++.| |..++++
T Consensus 211 ~~~~~~l~~~g----F~~i~~~ 228 (266)
T d1o54a_ 211 QETLKKLQELP----FIRIEVW 228 (266)
T ss_dssp HHHHHHHHHSS----EEEEEEE
T ss_pred HHHHHHHHHCC----ceeEEEE
Confidence 66777777765 6766655
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.58 E-value=1.6e-14 Score=121.73 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=85.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.|++++...+++ ++++...|+ ... . ..++||+|
T Consensus 32 grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~-----~~~-~---~~~~fD~I 99 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDL-----NTL-T---FDGEYDFI 99 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCT-----TTC-C---CCCCEEEE
T ss_pred CcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheec-----ccc-c---ccccccEE
Confidence 79999999999999999998 689999999999999999999988876 489999998 222 2 35789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+++..+..... + -...+++.+.++|+|||++++..
T Consensus 100 ~~~~~~~~~~~------~------------------~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 100 LSTVVMMFLEA------Q------------------TIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp EEESCGGGSCT------T------------------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeeeeecCCH------H------------------HHHHHHHHHHHHcCCCcEEEEEE
Confidence 99876543221 1 14589999999999999988865
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.58 E-value=1.2e-14 Score=122.21 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=59.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++|||+|||||.+++.++.. +..+|+|+|+|+.+++.|++|+. ++.++++|+ . .+ .++||+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~-----~-~l-----~~~fD~ 110 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG------GVNFMVADV-----S-EI-----SGKYDT 110 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCG-----G-GC-----CCCEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHccc------cccEEEEeh-----h-hc-----CCcceE
Confidence 489999999999999887776 45689999999999999999863 478999998 2 22 468999
Q ss_pred EEEcCCCCC
Q psy7093 220 VVSNPPYVP 228 (322)
Q Consensus 220 Iv~NPPy~~ 228 (322)
||+||||..
T Consensus 111 Vi~NPPfg~ 119 (197)
T d1ne2a_ 111 WIMNPPFGS 119 (197)
T ss_dssp EEECCCC--
T ss_pred EEeCcccch
Confidence 999999964
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=6.9e-15 Score=124.82 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=97.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..|||+|||+|..++.+|+.+|+..++|+|+++.++..|.++++..++. ++.++++|+ . .+...++.+.+|.|
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da-----~-~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDA-----D-TLTDVFEPGEVKRV 103 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCG-----G-GHHHHCCTTSCCEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccch-----h-hhhcccCchhhhcc
Confidence 5899999999999999999999999999999999999999999999986 499999998 3 22223467789988
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICG 295 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~ 295 (322)
+++-|-......+ ... .| +...+++.+.+.|||||.+++-+.. ...+.+.+.+...+
T Consensus 104 ~i~fp~P~~k~~h---------~k~-Rl--------~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 104 YLNFSDPWPKKRH---------EKR-RL--------TYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp EEESCCCCCSGGG---------GGG-ST--------TSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred ccccccccchhhh---------cch-hh--------hHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 7764422222110 000 00 1247899999999999999987643 22455666666665
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=9.1e-15 Score=123.86 Aligned_cols=77 Identities=22% Similarity=0.417 Sum_probs=65.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||||++++.++.. +..+|+|+|+|+.+++.|++|++.++.. ..++++|+ .. ..++||+
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~--~~~~~~d~-----~~------~~~~fD~ 112 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGDV-----SE------FNSRVDI 112 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTS--EEEEESCG-----GG------CCCCCSE
T ss_pred CCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCC--ceEEECch-----hh------hCCcCcE
Confidence 479999999999999998776 5569999999999999999999988754 78899998 22 2468999
Q ss_pred EEEcCCCCCCC
Q psy7093 220 VVSNPPYVPSL 230 (322)
Q Consensus 220 Iv~NPPy~~~~ 230 (322)
||+||||....
T Consensus 113 Vi~nPP~~~~~ 123 (201)
T d1wy7a1 113 VIMNPPFGSQR 123 (201)
T ss_dssp EEECCCCSSSS
T ss_pred EEEcCcccccc
Confidence 99999997543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=1.5e-14 Score=127.10 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=98.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEccCCCcc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMH--NVANQLQVFHAEIDSKG 203 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~--~l~~~i~~~~~D~~~~~ 203 (322)
..++..+.-. ++.+|||+|||||.+++.+|+.. |..+|+++|+++++++.|++|++.. +...++.+.++|+
T Consensus 86 s~Ii~~l~i~--PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~---- 159 (264)
T d1i9ga_ 86 AQIVHEGDIF--PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---- 159 (264)
T ss_dssp HHHHHHTTCC--TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG----
T ss_pred HHHHHHhCCC--CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc----
Confidence 4455555554 44899999999999999999984 6789999999999999999999875 3445799999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-C
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-D 282 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~ 282 (322)
.+. .++++.||.|+.+-|- |. .++..+.+.|||||.+++-++. .
T Consensus 160 -~~~---~~~~~~fDaV~ldlp~-----------------P~--------------~~l~~~~~~LkpGG~lv~~~P~i~ 204 (264)
T d1i9ga_ 160 -ADS---ELPDGSVDRAVLDMLA-----------------PW--------------EVLDAVSRLLVAGGVLMVYVATVT 204 (264)
T ss_dssp -GGC---CCCTTCEEEEEEESSC-----------------GG--------------GGHHHHHHHEEEEEEEEEEESSHH
T ss_pred -ccc---cccCCCcceEEEecCC-----------------HH--------------HHHHHHHhccCCCCEEEEEeCccC
Confidence 322 2356889999997542 11 4677899999999999886665 4
Q ss_pred CHHHHHHHHHHc
Q psy7093 283 HLDKIKEWLGIC 294 (322)
Q Consensus 283 ~~~~~~~~l~~~ 294 (322)
|.+.+.+.++..
T Consensus 205 Qv~~~~~~l~~~ 216 (264)
T d1i9ga_ 205 QLSRIVEALRAK 216 (264)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHc
Confidence 666666666543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=1.7e-14 Score=128.38 Aligned_cols=119 Identities=13% Similarity=0.250 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+.+++.+++.+.... ++.+|||+|||+|.++..+++.+| +.+|+|+|+|+.+++.|++++...+. ++++.++|+
T Consensus 12 ~d~l~~l~~~~~~~~-~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~-- 86 (281)
T d2gh1a1 12 DDYVSFLVNTVWKIT-KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDA-- 86 (281)
T ss_dssp HHHHHHHHHTTSCCC-SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCT--
T ss_pred HHHHHHHHHHHhccC-CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccc--
Confidence 345566665543322 447999999999999999999876 47999999999999999999987764 489999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ ++ ..++||+|+++.-+....+ ...+++++.+.|||||.+++..
T Consensus 87 ---~~-~~---~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 87 ---TE-IE---LNDKYDIAICHAFLLHMTT--------------------------PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ---TT-CC---CSSCEEEEEEESCGGGCSS--------------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---cc-cc---ccCCceEEEEehhhhcCCC--------------------------HHHHHHHHHHHcCcCcEEEEEE
Confidence 32 22 2457999999865443222 3478999999999999987744
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.4e-14 Score=128.49 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=99.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc----------CCCCcEEEEE
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMH----------NVANQLQVFH 196 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~----------~l~~~i~~~~ 196 (322)
.++..+.-. ++.+|||+|||||++++.+|+.. |+.+|+++|+++++++.|++|++.. +..+++.+.+
T Consensus 89 ~Il~~l~i~--pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 89 MILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHTCC--TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhCCC--CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 445555544 44899999999999999999875 6789999999999999999999864 2345799999
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+|+ .+. ...+....||.|+.+.|-.. .++.++.+.|||||.++
T Consensus 167 ~di-----~~~-~~~~~~~~fD~V~LD~p~P~-------------------------------~~l~~~~~~LKpGG~lv 209 (324)
T d2b25a1 167 KDI-----SGA-TEDIKSLTFDAVALDMLNPH-------------------------------VTLPVFYPHLKHGGVCA 209 (324)
T ss_dssp SCT-----TCC-C-------EEEEEECSSSTT-------------------------------TTHHHHGGGEEEEEEEE
T ss_pred cch-----hhc-ccccCCCCcceEeecCcCHH-------------------------------HHHHHHHHhccCCCEEE
Confidence 998 222 11234568999999765211 35778999999999998
Q ss_pred EEEcC-CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 277 LETNH-DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 277 ~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+-++. .|-..+.+.++..+. +|..+++.
T Consensus 210 ~~~P~i~Qv~~~~~~l~~~~~--~f~~i~~~ 238 (324)
T d2b25a1 210 VYVVNITQVIELLDGIRTCEL--ALSCEKIS 238 (324)
T ss_dssp EEESSHHHHHHHHHHHHHHTC--CEEEEEEE
T ss_pred EEeCCHHHHHHHHHHHHHcCC--CceeeEEE
Confidence 75543 555666666776553 57777655
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=5.5e-14 Score=125.48 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+..++.+++.+... ++.+|||+|||.|.+++.+|+.++ ++|+|+++|+..++.|++.+...++.+++.+...|.
T Consensus 47 ~~k~~~~~~~l~l~--~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~--- 120 (291)
T d1kpia_ 47 YAKRKLALDKLNLE--PGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW--- 120 (291)
T ss_dssp HHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---
T ss_pred HHHHHHHHHhcCCC--CCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---
Confidence 34456677777655 348999999999999999998864 799999999999999999999999999999998887
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.. ..++||.|+|-=-+ +++.. .++..|...|+.+++.+.++|||||.+++.+
T Consensus 121 ---~~-----~~~~fD~i~sie~~------eH~~~-----------~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 121 ---EE-----FDEPVDRIVSLGAF------EHFAD-----------GAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp ---GG-----CCCCCSEEEEESCG------GGTTC-----------CSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ---cc-----cccccceEeechhH------Hhcch-----------hhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 11 35789999993211 11110 1223467789999999999999999999854
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.53 E-value=1.6e-13 Score=120.10 Aligned_cols=127 Identities=16% Similarity=0.279 Sum_probs=98.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++++...++.++++++.+|+ ++.. ..+||+|
T Consensus 82 ~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~-----~~~~-----~~~~D~v 150 (253)
T d1tw3a2 82 RHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF-----FEPL-----PRKADAI 150 (253)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT-----TSCC-----SSCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccc-----hhhc-----ccchhhe
Confidence 7999999999999999999999999999998 578999999999999988999999998 5543 2469999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEc-------------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETN------------------- 280 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~------------------- 280 (322)
+++--.+ .++.+. ..++++++.+.|||||.+++ |..
T Consensus 151 ~~~~vlh------~~~d~~------------------~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~ 206 (253)
T d1tw3a2 151 ILSFVLL------NWPDHD------------------AVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRML 206 (253)
T ss_dssp EEESCGG------GSCHHH------------------HHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHH
T ss_pred eeccccc------cCCchh------------------hHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHH
Confidence 9853322 222221 34789999999999998776 321
Q ss_pred ------CCCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 281 ------HDHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 281 ------~~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
....++..+++++.| |..+++.
T Consensus 207 ~~~~g~~rt~~e~~~ll~~AG----f~~~~v~ 234 (253)
T d1tw3a2 207 VFLGGALRTREKWDGLAASAG----LVVEEVR 234 (253)
T ss_dssp HHHSCCCCBHHHHHHHHHHTT----EEEEEEE
T ss_pred hhCCCcCCCHHHHHHHHHHCC----CeEEEEE
Confidence 013456677888886 7766654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=4.9e-14 Score=125.29 Aligned_cols=117 Identities=18% Similarity=0.247 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
.++.+++.+... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+..++.|++.++..++..++.+...|.
T Consensus 40 k~~~~~~~l~l~--~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~----- 111 (280)
T d2fk8a1 40 KVDLNLDKLDLK--PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW----- 111 (280)
T ss_dssp HHHHHHTTSCCC--TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG-----
T ss_pred HHHHHHHHcCCC--CCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh-----
Confidence 345566666544 34899999999999999998875 5799999999999999999999999988888888886
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.. ..++||.|++-=- ++++. ...+..+++.+.++|||||.+++.+
T Consensus 112 -~~-----~~~~fD~i~si~~------~eh~~------------------~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 112 -ED-----FAEPVDRIVSIEA------FEHFG------------------HENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp -GG-----CCCCCSEEEEESC------GGGTC------------------GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -hh-----hccchhhhhHhhH------HHHhh------------------hhhHHHHHHHHHhccCCCceEEEEE
Confidence 22 2468999998321 11111 1226789999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=4.7e-14 Score=126.00 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEEccC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN---QLQVFHAEI 199 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~---~i~~~~~D~ 199 (322)
+...+++.+.+...+. .+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+... +..+...|+
T Consensus 42 ~~~~~~l~~~l~~~~~--~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~ 117 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117 (292)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred HHHHHHHHHHhhhcCC--CEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccc
Confidence 3445566666665433 79999999999999999998 6899999999999999999987765431 244555665
Q ss_pred CCcccccccCcCcCCCCeeEEEEcC---CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNP---PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NP---Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
..........++||+|++-- .|.+... ...+-.+.+++++.++|||||+++
T Consensus 118 -----~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 118 -----LTLDKDVPAGDGFDAVICLGNSFAHLPDSK---------------------GDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp -----GGHHHHSCCTTCEEEEEECSSCGGGSCCTT---------------------SSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred -----cccccccCCCCCceEEEEecCchhhcCCcc---------------------cChHHHHHHHHHHHHHcCcCcEEE
Confidence 21100111356899999721 1221111 112235689999999999999999
Q ss_pred EEEc
Q psy7093 277 LETN 280 (322)
Q Consensus 277 ~e~~ 280 (322)
+++.
T Consensus 172 ~~~~ 175 (292)
T d1xvaa_ 172 IDHR 175 (292)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 9774
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.51 E-value=9.4e-14 Score=121.38 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=89.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.|++++...+...++.+.++|+ ..... ...++||+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~-----~~~~~--~~~~~fD~ 96 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-----YGRHM--DLGKEFDV 96 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-----TTSCC--CCSSCEEE
T ss_pred cCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch-----hhhcc--cccccceE
Confidence 379999999999999999887 34689999999999999999988777666799999998 33211 13568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGI 293 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~ 293 (322)
|+|+--.+... .+ -+-.+.+++.+.++|+|||++++.+.. ...+...+..
T Consensus 97 V~~~~~l~~~~------------~~----------~~~~~~~l~~i~~~Lk~gG~~i~~~~~--~~~i~~~~~~ 146 (252)
T d1ri5a_ 97 ISSQFSFHYAF------------ST----------SESLDIAQRNIARHLRPGGYFIMTVPS--RDVILERYKQ 146 (252)
T ss_dssp EEEESCGGGGG------------SS----------HHHHHHHHHHHHHTEEEEEEEEEEEEC--HHHHHHHHHH
T ss_pred EEEcceeeecC------------CC----------HHHHHHHHHHHhceeCCCCEEEEEecC--HHHHHHHHHh
Confidence 99964322110 01 112468999999999999999886643 3444444433
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=6.9e-14 Score=119.88 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=97.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++...+.. +++++++|+ .+ ++ ++.++||+
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~-----~~-~~--~~~~~fD~ 130 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGL-----QD-FT--PEPDSYDV 130 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCG-----GG-CC--CCSSCEEE
T ss_pred CCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccccc-ccccccccc-----cc-cc--cccccccc
Confidence 4789999999999999887664 358999999999999999998877654 489999998 33 32 24679999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc--C-------------CCH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN--H-------------DHL 284 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~--~-------------~~~ 284 (322)
|+++--+. .++.+. ...+++.+.++|+|||.+++... . ...
T Consensus 131 I~~~~~l~------h~~~~~------------------~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~ 186 (222)
T d2ex4a1 131 IWIQWVIG------HLTDQH------------------LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDL 186 (222)
T ss_dssp EEEESCGG------GSCHHH------------------HHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBH
T ss_pred cccccccc------cchhhh------------------hhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCH
Confidence 99964332 222211 34789999999999999988521 1 136
Q ss_pred HHHHHHHHHcCCCCceeeEEEe
Q psy7093 285 DKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+.+.+++++.| |..++..
T Consensus 187 ~~~~~l~~~aG----f~ii~~~ 204 (222)
T d2ex4a1 187 DVVRRIICSAG----LSLLAEE 204 (222)
T ss_dssp HHHHHHHHHTT----CCEEEEE
T ss_pred HHHHHHHHHcC----CEEEEEE
Confidence 77899999987 5655544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=3.1e-13 Score=123.99 Aligned_cols=146 Identities=16% Similarity=0.312 Sum_probs=107.9
Q ss_pred CCCCCHHHHHHHHHHHHHHH-------cCCCceeEecce---eecCeEEEeCCCCcc--cCchhHHHHHHHHHHhccCCC
Q psy7093 71 NTELTNDQITHLNKLCECRL-------ARMPVQYIIKEW---NFRDLTLKMTPPVFI--PRSETEELIDIITDKLESSNH 138 (322)
Q Consensus 71 ~~~l~~~~~~~~~~~~~rr~-------~~~p~~yi~g~~---~f~~~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~ 138 (322)
..+++....+.+..+.+... .......+.|.. ++.|.+|.++|+.|+ .....+.+++.+.+++....
T Consensus 134 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~- 212 (358)
T d1uwva2 134 TAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQP- 212 (358)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCEEEEESSSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCT-
T ss_pred ccccCHHHHHHHHHhhhccceEEEEeecceeEEeecCCceEEecCCEEEEECCchhhccchhhhhHHHHHHHHhhccCC-
Confidence 44566666666655543322 122333444432 245789999999998 24556788888888886543
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~f 217 (322)
+.+|||++||+|.+++.+|+. ..+|+|+|+++.+++.|++|++.+++.+ ++|+.+|. .+.+... ....++
T Consensus 213 -~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~-----~~~~~~~~~~~~~~ 283 (358)
T d1uwva2 213 -EDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENL-----EEDVTKQPWAKNGF 283 (358)
T ss_dssp -TCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCT-----TSCCSSSGGGTTCC
T ss_pred -CceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhccccc-ceeeecch-----hhhhhhhhhhhccC
Confidence 378999999999999999987 6799999999999999999999999875 99999998 4444321 124679
Q ss_pred eEEEEcCCC
Q psy7093 218 DLVVSNPPY 226 (322)
Q Consensus 218 DlIv~NPPy 226 (322)
|+||.|||=
T Consensus 284 d~vilDPPR 292 (358)
T d1uwva2 284 DKVLLDPAR 292 (358)
T ss_dssp SEEEECCCT
T ss_pred ceEEeCCCC
Confidence 999999994
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=9.6e-14 Score=119.37 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=96.4
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~ 183 (322)
.+..+.++.+..+..|. ++..+++.+...-.++.+|||+|||||+.+..+|+.. +..+|+++|+++++++.|++|+
T Consensus 45 ~D~~l~i~~~~~is~P~---~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l 121 (224)
T d1i1na_ 45 MDSPQSIGFQATISAPH---MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV 121 (224)
T ss_dssp SSSCEEEETTEEECCHH---HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCCCccccchhhhhhhH---HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhc
Confidence 44455555555665553 4556677664322244799999999999999998864 4679999999999999999999
Q ss_pred HHcCCC----CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH
Q psy7093 184 VMHNVA----NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259 (322)
Q Consensus 184 ~~~~l~----~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~ 259 (322)
++.++. +++.+..+|. ....+ ..++||+|+++.....
T Consensus 122 ~~~~~~~~~~~~~~~~~gD~-----~~~~~---~~~~fD~I~~~~~~~~------------------------------- 162 (224)
T d1i1na_ 122 RKDDPTLLSSGRVQLVVGDG-----RMGYA---EEAPYDAIHVGAAAPV------------------------------- 162 (224)
T ss_dssp HHHCTHHHHTSSEEEEESCG-----GGCCG---GGCCEEEEEECSBBSS-------------------------------
T ss_pred cccCcccccccceEEEEeec-----ccccc---hhhhhhhhhhhcchhh-------------------------------
Confidence 877652 4689999998 44332 4568999999643211
Q ss_pred HHHHHHhccCccCcEEEEEEcCC
Q psy7093 260 PICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 260 ~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+.....+.|||||.+++-++..
T Consensus 163 -ip~~l~~~LkpGG~LV~pv~~~ 184 (224)
T d1i1na_ 163 -VPQALIDQLKPGGRLILPVGPA 184 (224)
T ss_dssp -CCHHHHHTEEEEEEEEEEESCT
T ss_pred -cCHHHHhhcCCCcEEEEEEccC
Confidence 1122457899999999977654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=8e-14 Score=119.01 Aligned_cols=115 Identities=16% Similarity=0.244 Sum_probs=88.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.++..+++.+.-.+ +.+|||+|||||.++..+|+.. +..+|+++|+++.+++.|++|++..++.+ +.++++|.
T Consensus 62 ~~~a~~l~~l~l~~--g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~--- 135 (213)
T d1dl5a1 62 SLMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDG--- 135 (213)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCG---
T ss_pred hhhHHHHHhhhccc--cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCch---
Confidence 45666777776553 4899999999999999999875 46799999999999999999999988764 88889998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+.++ ..++||+|+++.... .++ ..+.+.|||||.+++.++.
T Consensus 136 --~~~~~---~~~~fD~I~~~~~~~------~~p--------------------------~~l~~~LkpGG~lv~pv~~ 177 (213)
T d1dl5a1 136 --YYGVP---EFSPYDVIFVTVGVD------EVP--------------------------ETWFTQLKEGGRVIVPINL 177 (213)
T ss_dssp --GGCCG---GGCCEEEEEECSBBS------CCC--------------------------HHHHHHEEEEEEEEEEBCB
T ss_pred --HHccc---cccchhhhhhhccHH------HhH--------------------------HHHHHhcCCCcEEEEEECc
Confidence 44332 356899999975321 111 1234569999999987654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=1.2e-13 Score=117.41 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=90.9
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
.|....+...++....-.-.++.+|||+|||+|..+..+++..|..+|+|+|+|+.+++.|+++++..+ ++.++.+|
T Consensus 36 ~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d 112 (209)
T d1nt2a_ 36 VPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFD 112 (209)
T ss_dssp CGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSC
T ss_pred CCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEee
Confidence 345555655555432211124589999999999999999999888899999999999999999988754 58999999
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.++.. .......+|+|+++.+... ....++.++.+.|||||.+++.
T Consensus 113 ~~~~~~-----~~~~~~~vd~v~~~~~~~~----------------------------~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 113 ASKPWK-----YSGIVEKVDLIYQDIAQKN----------------------------QIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp TTCGGG-----TTTTCCCEEEEEECCCSTT----------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCccc-----cccccceEEEEEecccChh----------------------------hHHHHHHHHHHHhccCCeEEEE
Confidence 832111 1112346888888754321 1347889999999999999885
Q ss_pred E
Q psy7093 279 T 279 (322)
Q Consensus 279 ~ 279 (322)
+
T Consensus 160 ~ 160 (209)
T d1nt2a_ 160 V 160 (209)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=6.8e-14 Score=120.82 Aligned_cols=98 Identities=19% Similarity=0.333 Sum_probs=75.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .. .++.+|+ +.++ ++.++||+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~------~~l~--~~~~~fD~ 105 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG----VK---NVVEAKA------EDLP--FPSGAFEA 105 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT----CS---CEEECCT------TSCC--SCTTCEEE
T ss_pred CCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc----cc---ccccccc------cccc--cccccccc
Confidence 379999999999999999987 679999999999999999763 11 2567887 3343 35689999
Q ss_pred EEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 220 VVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 220 Iv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+|.- -+....+ ...+++++.++|||||.+++.+.
T Consensus 106 ii~~~~~~~~~~d--------------------------~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 106 VLALGDVLSYVEN--------------------------KDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp EEECSSHHHHCSC--------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeeecchhhhhhh--------------------------HHHHHHHHHhhcCcCcEEEEEEC
Confidence 99842 2111111 34788999999999999999774
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.3e-14 Score=120.79 Aligned_cols=136 Identities=11% Similarity=0.040 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---------------
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--------------- 187 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--------------- 187 (322)
..+++.+.+.+... ++.+|||+|||+|..+..+|+. +.+|+|+|+|+.|++.|+++.....
T Consensus 31 ~~l~~~~~~~l~~~--~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (229)
T d2bzga1 31 QLLKKHLDTFLKGK--SGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106 (229)
T ss_dssp HHHHHHHHHHHTTC--CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence 34555555555543 2379999999999999999998 8899999999999999988754321
Q ss_pred -CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh
Q psy7093 188 -VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS 266 (322)
Q Consensus 188 -l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~ 266 (322)
...+++++++|+ +...+ ...+.||+|+..- .+..+.++. .+.+++.+.
T Consensus 107 ~~~~~v~~~~~d~-----~~l~~--~~~~~fd~i~~~~------~l~~~~~~~------------------r~~~~~~~~ 155 (229)
T d2bzga1 107 SSSGNISLYCCSI-----FDLPR--TNIGKFDMIWDRG------ALVAINPGD------------------RKCYADTMF 155 (229)
T ss_dssp ETTSSEEEEESCG-----GGGGG--SCCCCEEEEEESS------STTTSCGGG------------------HHHHHHHHH
T ss_pred ecCCcEEEEEcch-----hhccc--cccCceeEEEEEE------EEEeccchh------------------hHHHHHHHH
Confidence 123688999998 43322 2457899998832 223333333 357899999
Q ss_pred ccCccCcEEEEEEcC------------CCHHHHHHHHHH
Q psy7093 267 NYLKPNGSIFLETNH------------DHLDKIKEWLGI 293 (322)
Q Consensus 267 ~~Lk~gG~l~~e~~~------------~~~~~~~~~l~~ 293 (322)
++|||||.+++++-. -...++.+++..
T Consensus 156 ~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~ 194 (229)
T d2bzga1 156 SLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK 194 (229)
T ss_dssp HTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT
T ss_pred hhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC
Confidence 999999998776521 235678888854
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.47 E-value=8e-13 Score=113.40 Aligned_cols=99 Identities=19% Similarity=0.327 Sum_probs=75.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+.+. .+++.++++|+ +..+ ..++||+
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~------~~~~---~~~~fD~ 84 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRL-----KDGITYIHSRF------EDAQ---LPRRYDN 84 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCG------GGCC---CSSCEEE
T ss_pred CCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhccc-----ccccccccccc------cccc---ccccccc
Confidence 378999999999999999887 568999999999999998663 23599999997 2222 3578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh-ccCccCcEEEEEEc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS-NYLKPNGSIFLETN 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~-~~Lk~gG~l~~e~~ 280 (322)
|++.--+ +++.. ...++..+. ++|+|||.+++.+.
T Consensus 85 I~~~~vl------eh~~d--------------------~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 85 IVLTHVL------EHIDD--------------------PVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp EEEESCG------GGCSS--------------------HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccccee------EecCC--------------------HHHHHHHHHHHhcCCCceEEEEeC
Confidence 9995322 12211 235677776 89999999999874
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=3.8e-13 Score=116.02 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=103.2
Q ss_pred cCchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 118 PRSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
+.|-...+...+...+.... .++.+|||+|||||..+..+|+..|+..|+|+|+|+.+++.+++++... +++.++.
T Consensus 52 w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~ 128 (230)
T d1g8sa_ 52 WNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPIL 128 (230)
T ss_dssp CCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEE
T ss_pred ECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEE
Confidence 34555566666666554322 2457999999999999999999988899999999999999999887654 3477788
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
.|.. ...........+|+++++..+.. -.+.++.++.+.|||||.++
T Consensus 129 ~d~~-----~~~~~~~~~~~v~~i~~~~~~~~----------------------------~~~~~l~~~~r~LKpgG~~~ 175 (230)
T d1g8sa_ 129 GDAN-----KPQEYANIVEKVDVIYEDVAQPN----------------------------QAEILIKNAKWFLKKGGYGM 175 (230)
T ss_dssp CCTT-----CGGGGTTTCCCEEEEEECCCSTT----------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred Eeec-----cCcccccccceeEEeeccccchH----------------------------HHHHHHHHHHHhcccCceEE
Confidence 8872 22211111223455555322111 13578899999999999988
Q ss_pred EEEcCC------C----HHHHHHHHHHcCCCCceeeEEEecCCCCCCe
Q psy7093 277 LETNHD------H----LDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314 (322)
Q Consensus 277 ~e~~~~------~----~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R 314 (322)
+.+... . .+.+.+.|++.| |..++.. |+.+.+|
T Consensus 176 i~~k~~~~d~~~~~~~~~~e~~~~L~~aG----F~ive~i-dL~py~~ 218 (230)
T d1g8sa_ 176 IAIKARSIDVTKDPKEIFKEQKEILEAGG----FKIVDEV-DIEPFEK 218 (230)
T ss_dssp EEEEGGGTCSSSCHHHHHHHHHHHHHHHT----EEEEEEE-ECTTTST
T ss_pred EEeeccccCCCCCHHHHHHHHHHHHHHcC----CEEEEEe-cCCCCcC
Confidence 864211 1 244556677775 7777654 5555443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=2.9e-13 Score=120.32 Aligned_cols=118 Identities=18% Similarity=0.309 Sum_probs=93.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
..++.+++.+... ++.+|||+|||.|.+++.+|+.. +++|+|+++|+..++.|++.++..++.+++++...|.
T Consensus 49 ~k~~~~~~~l~l~--~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~---- 121 (285)
T d1kpga_ 49 AKIDLALGKLGLQ--PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---- 121 (285)
T ss_dssp HHHHHHHTTTTCC--TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG----
T ss_pred HHHHHHHHHcCCC--CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh----
Confidence 3446666666654 34899999999999999999987 5899999999999999999999999999999999997
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
..+ +++||.|+|-= .++++ |...++.+++.+.++|+|||.+++.+
T Consensus 122 --~~~-----~~~fD~i~si~------~~eh~------------------~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 122 --EQF-----DEPVDRIVSIG------AFEHF------------------GHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp --GGC-----CCCCSEEEEES------CGGGT------------------CTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred --hcc-----cccccceeeeh------hhhhc------------------CchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 222 46899999821 11111 11226789999999999999998743
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.46 E-value=1.4e-12 Score=114.32 Aligned_cols=128 Identities=16% Similarity=0.282 Sum_probs=99.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++++...++.+++.++.+|. ++++ ...||+|
T Consensus 83 ~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~-----~~~~-----p~~~D~v 151 (256)
T d1qzza2 83 RHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF-----FKPL-----PVTADVV 151 (256)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT-----TSCC-----SCCEEEE
T ss_pred CEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec-----cccc-----cccchhh
Confidence 6899999999999999999999999999998 788999999999999989999999998 5543 2359999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEc-------------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETN------------------- 280 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~------------------- 280 (322)
++.--.+ .++++. ...+++++.+.|||||.+++ +.-
T Consensus 152 ~~~~vLh------~~~d~~------------------~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~m 207 (256)
T d1qzza2 152 LLSFVLL------NWSDED------------------ALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRM 207 (256)
T ss_dssp EEESCGG------GSCHHH------------------HHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHH
T ss_pred hcccccc------ccCcHH------------------HHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHH
Confidence 9853222 222221 34789999999999998765 320
Q ss_pred -------CCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 281 -------HDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 281 -------~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
....++..+++++.| |+.++++.
T Consensus 208 l~~~~g~~rt~~e~~~ll~~AG----f~~~~~~~ 237 (256)
T d1qzza2 208 LTFMGGRVRTRDEVVDLAGSAG----LALASERT 237 (256)
T ss_dssp HHHHSCCCCCHHHHHHHHHTTT----EEEEEEEE
T ss_pred HhhCCCccCCHHHHHHHHHHCC----CceeEEEE
Confidence 012456777888875 77777654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.45 E-value=1.1e-13 Score=115.43 Aligned_cols=108 Identities=9% Similarity=0.002 Sum_probs=80.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEEccCCCcccccc
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV-----------ANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~~~~~~ 207 (322)
++.+|||+|||+|..+..+|++ +.+|+|+|+|+.+++.|+++++..+. ...++++++|+ ++.
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~l 92 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-----FAL 92 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-----SSS
T ss_pred CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc-----ccc
Confidence 3479999999999999999998 89999999999999999998865432 12356778887 322
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ .....||+|++.--+.. +.+ +....+++.+.++|||||.+++..
T Consensus 93 ~~--~~~~~~D~i~~~~~l~~------l~~------------------~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 93 TA--RDIGHCAAFYDRAAMIA------LPA------------------DMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp TH--HHHHSEEEEEEESCGGG------SCH------------------HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred cc--ccccceeEEEEEeeeEe------cch------------------hhhHHHHHHHHHhcCCCcEEEEEE
Confidence 11 12457999998533221 222 225689999999999999987754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.8e-13 Score=119.61 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.++..+.+.+.. ++.+|||+|||+|.++..+++..|+.+++|+|+|+.+++.|+++. .++.+.++|+
T Consensus 71 ~~~~~~l~~~~~~---~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~--- 138 (268)
T d1p91a_ 71 DAIVAQLRERLDD---KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASS--- 138 (268)
T ss_dssp HHHHHHHHHHSCT---TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCT---
T ss_pred HHHHHHHHHhcCC---CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeeh---
Confidence 3444444444433 347999999999999999999999999999999999999998652 3489999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-C
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-H 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~ 281 (322)
..++ +..+.||+|+++.. | ..++++.++|||||.+++.+. +
T Consensus 139 ---~~l~--~~~~sfD~v~~~~~------------------~---------------~~~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 139 ---HRLP--FSDTSMDAIIRIYA------------------P---------------CKAEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp ---TSCS--BCTTCEEEEEEESC------------------C---------------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ---hhcc--CCCCCEEEEeecCC------------------H---------------HHHHHHHHHhCCCcEEEEEeeCC
Confidence 3333 45788999998521 1 013457789999999999875 3
Q ss_pred CCHHHHHHH
Q psy7093 282 DHLDKIKEW 290 (322)
Q Consensus 282 ~~~~~~~~~ 290 (322)
+...++++.
T Consensus 181 ~~l~el~~~ 189 (268)
T d1p91a_ 181 RHLMELKGL 189 (268)
T ss_dssp TTTHHHHTT
T ss_pred cchHHHHHH
Confidence 444444444
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.43 E-value=5.9e-13 Score=112.47 Aligned_cols=115 Identities=18% Similarity=0.276 Sum_probs=86.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++ +++|+|+|+.+++.|+++ ++.++++|+ +.++ +.+++||+|
T Consensus 38 ~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~--------~~~~~~~d~------~~l~--~~~~~fD~I 95 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR--------GVFVLKGTA------ENLP--LKDESFDFA 95 (208)
T ss_dssp SCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT--------TCEEEECBT------TBCC--SCTTCEEEE
T ss_pred CeEEEECCCCcccccccc------eEEEEeCChhhccccccc--------ccccccccc------cccc--ccccccccc
Confidence 589999999999877663 468999999999999863 388999998 3333 356789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-------------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH------------------- 281 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~------------------- 281 (322)
+++--.....+ ...+++++.++|+|||.+++....
T Consensus 96 ~~~~~l~h~~d--------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 149 (208)
T d1vlma_ 96 LMVTTICFVDD--------------------------PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFY 149 (208)
T ss_dssp EEESCGGGSSC--------------------------HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCS
T ss_pred ccccccccccc--------------------------cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhcccccccc
Confidence 99643222111 347899999999999999886521
Q ss_pred -----CCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 282 -----DHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 282 -----~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
-..+.+.+++++.| |+.+++..
T Consensus 150 ~~~~~~s~~~l~~~l~~~G----f~~i~v~~ 176 (208)
T d1vlma_ 150 KNARFFSTEELMDLMRKAG----FEEFKVVQ 176 (208)
T ss_dssp TTCCCCCHHHHHHHHHHTT----CEEEEEEE
T ss_pred ccccCCCHHHHHHHHHHcC----CeEEEEEE
Confidence 12567889999886 67776553
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.42 E-value=1.2e-12 Score=111.43 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=103.1
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~ 193 (322)
|++|++ +++.+++.+.... +.+|||+|||+|.++..+.+..+ ...++|+|+++.++.. ..+..
T Consensus 1 v~TP~~----i~~~m~~l~~~~~--~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~ 64 (223)
T d2ih2a1 1 VETPPE----VVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAE 64 (223)
T ss_dssp CCCCHH----HHHHHHHHCCCCT--TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEE
T ss_pred CCCCHH----HHHHHHHhcCCCC--cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccce
Confidence 455544 4555555655443 37999999999999988887654 4689999999865433 23467
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhc--cccc-ccccCCCChhHHHHHHHHHHhccCc
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL--YEDI-KALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~--~ep~-~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
+.++|. +... ...+||+|++||||............... .... .......+..+.+..+++.+.++|+
T Consensus 65 ~~~~~~-----~~~~----~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk 135 (223)
T d2ih2a1 65 GILADF-----LLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK 135 (223)
T ss_dssp EEESCG-----GGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE
T ss_pred eeeeeh-----hccc----cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcc
Confidence 788887 4432 35689999999999765443322111000 0000 1112233445678899999999999
Q ss_pred cCcEEEEEEcC-----CCHHHHHHHHHHcC
Q psy7093 271 PNGSIFLETNH-----DHLDKIKEWLGICG 295 (322)
Q Consensus 271 ~gG~l~~e~~~-----~~~~~~~~~l~~~~ 295 (322)
+||.+++.++. ...+.+++++.+.+
T Consensus 136 ~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~ 165 (223)
T d2ih2a1 136 PGGVLVFVVPATWLVLEDFALLREFLAREG 165 (223)
T ss_dssp EEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred cCCceEEEEeeeeccCcchHHHHHHHHhcC
Confidence 99999988743 23567888877764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.42 E-value=9e-13 Score=112.27 Aligned_cols=131 Identities=14% Similarity=0.235 Sum_probs=98.7
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
.+..+.++.+..+..|. ++..+++.+...+ +.+|||+|||||+.+..+++.. +.+|+++|.++..++.|++|++
T Consensus 49 ~D~~l~i~~g~~is~P~---~~a~ml~~L~l~~--g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~ 122 (215)
T d1jg1a_ 49 IDEPLPIPAGQTVSAPH---MVAIMLEIANLKP--GMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLE 122 (215)
T ss_dssp SSSCEECSTTCEECCHH---HHHHHHHHHTCCT--TCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHH
T ss_pred ccCCcccchhhhhhhhh---hHHHHHHhhccCc--cceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHH
Confidence 45566667777776665 4556666666553 3799999999999999988764 4679999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHH
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
..+.. ++.++++|. ....+ ..++||.|+++..... ++ ..
T Consensus 123 ~~g~~-nv~~~~gd~-----~~g~~---~~~pfD~Iiv~~a~~~------ip----------------------~~---- 161 (215)
T d1jg1a_ 123 RAGVK-NVHVILGDG-----SKGFP---PKAPYDVIIVTAGAPK------IP----------------------EP---- 161 (215)
T ss_dssp HTTCC-SEEEEESCG-----GGCCG---GGCCEEEEEECSBBSS------CC----------------------HH----
T ss_pred HcCCc-eeEEEECcc-----ccCCc---ccCcceeEEeeccccc------CC----------------------HH----
Confidence 99976 499999998 54433 4678999999643211 11 12
Q ss_pred HhccCccCcEEEEEEcCC
Q psy7093 265 GSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~~ 282 (322)
..+.|+|||.+++-++..
T Consensus 162 l~~qL~~gGrLv~pv~~~ 179 (215)
T d1jg1a_ 162 LIEQLKIGGKLIIPVGSY 179 (215)
T ss_dssp HHHTEEEEEEEEEEECSS
T ss_pred HHHhcCCCCEEEEEEccC
Confidence 345699999999987653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.9e-13 Score=117.83 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=85.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+.+.+.+.+... +.+|||+|||+|..+..+++.. ..+|+++|+|+.+++.|++++...+ .++.++..|+
T Consensus 42 ~~~~la~~~~~~---g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~----- 110 (229)
T d1zx0a1 42 YMHALAAAASSK---GGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLW----- 110 (229)
T ss_dssp HHHHHHHHHTTT---CEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCH-----
T ss_pred HHHHHHHhhccC---CCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccc-----
Confidence 334444444332 3799999999999999999874 4689999999999999999987654 3477788876
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.. ....++.++||.|+.++........ . +.....+++.+.++|||||++++
T Consensus 111 ~~-~~~~~~~~~fD~i~fD~~~~~~~~~-~--------------------~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 111 ED-VAPTLPDGHFDGILYDTYPLSEETW-H--------------------THQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp HH-HGGGSCTTCEEEEEECCCCCBGGGT-T--------------------THHHHHHHHTHHHHEEEEEEEEE
T ss_pred cc-cccccccccccceeecccccccccc-c--------------------ccCHHHHHHHHHHHcCCCcEEEE
Confidence 22 1222456899999987643221110 0 11245789999999999999876
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.41 E-value=1.2e-12 Score=114.44 Aligned_cols=136 Identities=20% Similarity=0.256 Sum_probs=97.4
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
..++.+... ...+|||+|||+|.++..++... ..+|+++|.|+.+++.|+++.... ++++++++|+ ..
T Consensus 84 ~fl~~l~~~--~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~------~~ 151 (254)
T d1xtpa_ 84 NFIASLPGH--GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASM------ET 151 (254)
T ss_dssp HHHHTSTTC--CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCG------GG
T ss_pred HHHhhCCCC--CCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccccc---ccceeEEccc------cc
Confidence 344444433 23799999999999999888764 348999999999999999876432 3489999998 22
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC------
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH------ 281 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~------ 281 (322)
++ +..++||+|++.-.... ++.+ -..++++.+.+.|+|||.+++....
T Consensus 152 ~~--~~~~~fD~I~~~~vl~h------l~d~------------------d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~ 205 (254)
T d1xtpa_ 152 AT--LPPNTYDLIVIQWTAIY------LTDA------------------DFVKFFKHCQQALTPNGYIFFKENCSTGDRF 205 (254)
T ss_dssp CC--CCSSCEEEEEEESCGGG------SCHH------------------HHHHHHHHHHHHEEEEEEEEEEEEBC--CCE
T ss_pred cc--cCCCccceEEeeccccc------cchh------------------hhHHHHHHHHHhcCCCcEEEEEecCCCCCcc
Confidence 32 24678999999755433 2211 1347899999999999999884211
Q ss_pred ----------CCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 282 ----------DHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 282 ----------~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
...+.+.+++++.| |..++.
T Consensus 206 ~~d~~d~~~~rs~~~~~~l~~~aG----f~ii~~ 235 (254)
T d1xtpa_ 206 LVDKEDSSLTRSDIHYKRLFNESG----VRVVKE 235 (254)
T ss_dssp EEETTTTEEEBCHHHHHHHHHHHT----CCEEEE
T ss_pred eecccCCceeCCHHHHHHHHHHcC----CEEEEE
Confidence 13567899999987 455543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=1.3e-12 Score=118.56 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+.+.+.+..... ++++|||+|||+|.+++.+|+. +..+|+|+|.|+ ++..|+++.+.+++.++++++++|+
T Consensus 24 ~~y~~aI~~~~~~~--~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~--- 96 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLF--KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL--- 96 (328)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---
T ss_pred HHHHHHHHhccccC--CcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---
Confidence 34444444433322 2379999999999999988876 456999999996 6689999999999988999999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
..++ ++..+||+|++++....... | .....++....++|||||.++
T Consensus 97 ---~~l~--~~~~~~D~i~se~~~~~~~~-----------e------------~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 97 ---EDVH--LPFPKVDIIISEWMGYFLLY-----------E------------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp ---TTSC--CSSSCEEEEEECCCBTTBST-----------T------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred ---hhcc--CcccceeEEEEEecceeecc-----------c------------hhHHHHHHHHHhccCCCeEEE
Confidence 2222 35678999999865432111 1 114467777889999999874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1e-12 Score=118.62 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=81.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++|||+|||+|.+++.+|+. +..+|+|+|.|+. ...|+++++.+++.++++++++|+ .+ ++ .+.++||+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~-----~~-~~--~~~~~~D~ 103 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKV-----EE-VE--LPVEKVDI 103 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT-----TT-CC--CSSSCEEE
T ss_pred cCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccH-----HH-cc--cccceeEE
Confidence 378999999999999988886 4568999999975 577888899999999999999998 22 22 24578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|++++....... | ..+..++....++|+|||.++-
T Consensus 104 ivs~~~~~~l~~-----------e------------~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 104 IISEWMGYCLFY-----------E------------SMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp EEECCCBBTBTB-----------T------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred Eeeeeeeeeecc-----------H------------HHHHHHHHHHHhcCCCCeEEEe
Confidence 999865432111 0 1156788889999999998864
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.9e-12 Score=116.55 Aligned_cols=121 Identities=19% Similarity=0.281 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
++.+.+.+.+..... ++++|||+|||+|.+++.+|+. +..+|+|+|.|+.+. .|++++..++..++++++++|+
T Consensus 20 ~~~y~~ai~~~~~~~--~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~-- 93 (311)
T d2fyta1 20 TESYRDFIYQNPHIF--KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKI-- 93 (311)
T ss_dssp HHHHHHHHHHCGGGT--TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCT--
T ss_pred HHHHHHHHHhccccC--CcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeH--
Confidence 344555554443333 2379999999999999999987 446999999999876 4666777778788899999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
..+. .+..+||+|++++....... -.....++....++|+|||.++-
T Consensus 94 ----~~l~--~~~~~~D~Ivse~~~~~~~~-----------------------e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 94 ----EEVH--LPVEKVDVIISEWMGYFLLF-----------------------ESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp ----TTSC--CSCSCEEEEEECCCBTTBTT-----------------------TCHHHHHHHHHHHHEEEEEEEES
T ss_pred ----HHhc--CccccceEEEEeeeeeeccc-----------------------ccccHHHHHHHHhcCCCCcEEec
Confidence 2232 24578999999876543211 01245677777889999998864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.38 E-value=1.6e-12 Score=111.46 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=91.3
Q ss_pred EEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Q psy7093 108 TLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN 187 (322)
Q Consensus 108 ~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~ 187 (322)
.+.+.++..++.|.+ +..+++.+.-.+ +.+|||+|||||+++..+|+. ..+|+++|+++.+++.|++|....
T Consensus 44 ~l~i~~g~~~~~p~~---~a~ml~~L~l~~--g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~- 115 (224)
T d1vbfa_ 44 ALPILPGINTTALNL---GIFMLDELDLHK--GQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYY- 115 (224)
T ss_dssp CEEEETTEEECCHHH---HHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTC-
T ss_pred CcccCCCCceehhhh---HHHHHHHhhhcc--cceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcc-
Confidence 345556666656654 334566665543 389999999999999999887 579999999999999999987643
Q ss_pred CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc
Q psy7093 188 VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267 (322)
Q Consensus 188 l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~ 267 (322)
+++.++.+|. ....+ ..++||.|+++-... .+ .....+
T Consensus 116 --~nv~~~~~d~-----~~g~~---~~~pfD~Iiv~~a~~------~i--------------------------p~~l~~ 153 (224)
T d1vbfa_ 116 --NNIKLILGDG-----TLGYE---EEKPYDRVVVWATAP------TL--------------------------LCKPYE 153 (224)
T ss_dssp --SSEEEEESCG-----GGCCG---GGCCEEEEEESSBBS------SC--------------------------CHHHHH
T ss_pred --cccccccCch-----hhcch---hhhhHHHHHhhcchh------hh--------------------------hHHHHH
Confidence 4699999998 44332 357899999864321 11 112346
Q ss_pred cCccCcEEEEEEcCCC
Q psy7093 268 YLKPNGSIFLETNHDH 283 (322)
Q Consensus 268 ~Lk~gG~l~~e~~~~~ 283 (322)
.|+|||.|++.+|...
T Consensus 154 qLk~GGrLV~pvg~~~ 169 (224)
T d1vbfa_ 154 QLKEGGIMILPIGVGR 169 (224)
T ss_dssp TEEEEEEEEEEECSSS
T ss_pred hcCCCCEEEEEEcCCC
Confidence 7999999999887644
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.7e-12 Score=110.05 Aligned_cols=136 Identities=13% Similarity=0.095 Sum_probs=89.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc---------------------------
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ--------------------------- 191 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~--------------------------- 191 (322)
++.+|||+|||+|..++.++.. ...+|+|+|+|+.+++.|+++++.......
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 4478999999999988777766 245799999999999999999876543210
Q ss_pred -E-EEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC
Q psy7093 192 -L-QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269 (322)
Q Consensus 192 -i-~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L 269 (322)
+ .....+.. .+........++||+|++.--..... ...+-+..+++++.++|
T Consensus 130 ~~~~~~~~~~~----~~~~~~~~~~~~fD~i~~~~~l~~~~----------------------~~~~~~~~~l~~i~~~L 183 (257)
T d2a14a1 130 AVKRVLKCDVH----LGNPLAPAVLPLADCVLTLLAMECAC----------------------CSLDAYRAALCNLASLL 183 (257)
T ss_dssp HEEEEEECCTT----SSSTTTTCCCCCEEEEEEESCHHHHC----------------------SSHHHHHHHHHHHHTTE
T ss_pred hhhcccccccc----cccccccccCCcccEEeehhhHHHhc----------------------ccHHHHHHHHHHHHhcc
Confidence 0 11222220 01111123567899999853221100 01123678999999999
Q ss_pred ccCcEEEEEEc----------------CCCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 270 KPNGSIFLETN----------------HDHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 270 k~gG~l~~e~~----------------~~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
||||.+++... .-..+.+++++++.| |..+++
T Consensus 184 kpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~v~~~ 231 (257)
T d2a14a1 184 KPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAG----FDIEQL 231 (257)
T ss_dssp EEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTT----EEEEEE
T ss_pred CCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCC----CEEEEE
Confidence 99999988431 124788999999987 664443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=6.6e-12 Score=107.76 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 120 SETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
|-...+...++.-+.... .++.+|||+|||+|.++..+|+.. |..+|+|+|+|+.+++.++.+++..+ .+..+..
T Consensus 53 p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~ 129 (227)
T d1g8aa_ 53 PNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILG 129 (227)
T ss_dssp TTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEEC
T ss_pred CCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEE
Confidence 334455555655444321 245799999999999999999986 57899999999999999999886543 3777888
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|...+... ......+|+|+++.|.... ...++.++.+.|||||.+++
T Consensus 130 d~~~~~~~-----~~~~~~vD~i~~d~~~~~~----------------------------~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 130 DATKPEEY-----RALVPKVDVIFEDVAQPTQ----------------------------AKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp CTTCGGGG-----TTTCCCEEEEEECCCSTTH----------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCcccc-----cccccceEEEEEEccccch----------------------------HHHHHHHHHHhcccCCeEEE
Confidence 87322111 1234679999998765321 34789999999999999988
Q ss_pred EE
Q psy7093 278 ET 279 (322)
Q Consensus 278 e~ 279 (322)
.+
T Consensus 177 ~~ 178 (227)
T d1g8aa_ 177 AV 178 (227)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=1.1e-12 Score=109.77 Aligned_cols=148 Identities=18% Similarity=0.261 Sum_probs=111.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+.... +..++|+|||+|..+..+++.+|+.+|+|+|.++.|++.|+++++.++ +++.++++++.+
T Consensus 10 Vll~evi~~l~~~~--~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~-- 83 (192)
T d1m6ya2 10 VMVREVIEFLKPED--EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE-- 83 (192)
T ss_dssp TTHHHHHHHHCCCT--TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG--
T ss_pred hHHHHHHHhhCCCC--CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhh--
Confidence 45667777776653 389999999999999999999999999999999999999999988765 569999998611
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD- 282 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~- 282 (322)
.......+..++||.|+.+.++.+. -++..+.|+.+.+..+..+.++|+|||.+++..-..
T Consensus 84 -~~~~~~~~~~~~vdgIl~DlGvSs~-----------------Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~ 145 (192)
T d1m6ya2 84 -ADFLLKTLGIEKVDGILMDLGVSTY-----------------QLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL 145 (192)
T ss_dssp -HHHHHHHTTCSCEEEEEEECSCCHH-----------------HHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred -HHHHHHHcCCCCcceeeeccchhHh-----------------hhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence 0111111235789999998776321 234556789999999999999999999987744222
Q ss_pred CHHHHHHHHHHcC
Q psy7093 283 HLDKIKEWLGICG 295 (322)
Q Consensus 283 ~~~~~~~~l~~~~ 295 (322)
....+++++....
T Consensus 146 Edr~vk~~f~~~~ 158 (192)
T d1m6ya2 146 EDRIVKETFRNSK 158 (192)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhcc
Confidence 2344667776653
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.35 E-value=6.5e-12 Score=117.79 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=106.1
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHH
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-------------KLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-------------~~~v~~vDis~~al~~A~~ 181 (322)
.|+|++- ++.+++.+... .+.+|+|++||||.+.+.+++... ...++|+|+++.+..+|+.
T Consensus 144 f~TP~~I----v~~mv~ll~~~--~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~ 217 (425)
T d2okca1 144 YFTPRPL----IQAMVDCINPQ--MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM 217 (425)
T ss_dssp GCCCHHH----HHHHHHHHCCC--TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred hccchhh----hHhhheeccCc--ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHh
Confidence 4557554 45555555543 237999999999999999887542 1359999999999999999
Q ss_pred HHHHcCCCC-cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHH
Q psy7093 182 NAVMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260 (322)
Q Consensus 182 n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~ 260 (322)
|...++... ...+..+|. +... ...+||+|++||||........- ..... ...+.. ..+-.
T Consensus 218 n~~l~g~~~~~~~i~~~d~-----l~~~----~~~~fD~Ii~NPPfg~~~~~~~~-~~~~~------~~~~~~--~~~~~ 279 (425)
T d2okca1 218 NLYLHGIGTDRSPIVCEDS-----LEKE----PSTLVDVILANPPFGTRPAGSVD-INRPD------FYVETK--NNQLN 279 (425)
T ss_dssp HHHHTTCCSSCCSEEECCT-----TTSC----CSSCEEEEEECCCSSCCCTTCCC-CCCTT------SSSCCS--CHHHH
T ss_pred hhhhcCCccccceeecCch-----hhhh----cccccceEEecCCCCCCccccch-hhhhh------cccccc--cHHHH
Confidence 999887642 456778887 4332 35689999999999643321110 00000 111111 22457
Q ss_pred HHHHHhccCccCcEEEEEEcC-----CC-HHHHHHHHHHcC
Q psy7093 261 ICVFGSNYLKPNGSIFLETNH-----DH-LDKIKEWLGICG 295 (322)
Q Consensus 261 ~l~~~~~~Lk~gG~l~~e~~~-----~~-~~~~~~~l~~~~ 295 (322)
++..+..+|++||.+.+.++. .. ...+++.+-+.+
T Consensus 280 Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~ 320 (425)
T d2okca1 280 FLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF 320 (425)
T ss_dssp HHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred HHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence 899999999999998887742 22 456788777654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=3.6e-12 Score=108.88 Aligned_cols=121 Identities=12% Similarity=0.191 Sum_probs=97.1
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|+.-.++..+.+..+. ++|||+|||+|+-++++|..+| +.+++++|.++...+.|++|+++.++.++++++.+
T Consensus 44 ~~~~g~lL~~L~~~~~~-----k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G 118 (219)
T d2avda1 44 TCEQAQLLANLARLIQA-----KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 118 (219)
T ss_dssp CHHHHHHHHHHHHHTTC-----CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred CHHHHHHHHHHHHccCC-----CeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe
Confidence 45666666666665543 7999999999999999999886 68999999999999999999999999999999999
Q ss_pred cCCCcccccccCc---CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQP---DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~---~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++. ....++||+|+.+--. +.|...++.+.++|+|||+
T Consensus 119 da-----~e~l~~~~~~~~~~~fD~ifiD~dk-----------------------------~~y~~~~~~~~~lL~~GGv 164 (219)
T d2avda1 119 PA-----LETLDELLAAGEAGTFDVAVVDADK-----------------------------ENCSAYYERCLQLLRPGGI 164 (219)
T ss_dssp CH-----HHHHHHHHHTTCTTCEEEEEECSCS-----------------------------TTHHHHHHHHHHHEEEEEE
T ss_pred eh-----hhcchhhhhhcccCCccEEEEeCCH-----------------------------HHHHHHHHHHHHHhcCCcE
Confidence 98 544332 1235689999995211 0156778888999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 165 ii~D 168 (219)
T d2avda1 165 LAVL 168 (219)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9884
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.34 E-value=4.4e-12 Score=108.64 Aligned_cols=136 Identities=14% Similarity=0.221 Sum_probs=93.5
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC------CCCEEEEEeCCHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF------PKLKAIAIDQSKHACD 177 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~------~~~~v~~vDis~~al~ 177 (322)
|.+..+.++.+..+..|. ++..+++.+...-.++.+|||+|||||+.+..+++.. +..+|+++|++++.++
T Consensus 48 Y~D~~lpi~~~~~is~P~---~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~ 124 (223)
T d1r18a_ 48 YMDAPQPIGGGVTISAPH---MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR 124 (223)
T ss_dssp TBSSCEEEETTEEECCHH---HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHH
T ss_pred cCCCCccccCCceeehhh---hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHH
Confidence 345555556666664554 3456666653211134799999999999999888763 3458999999999999
Q ss_pred HHHHHHHHcCC----CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCC
Q psy7093 178 LTEQNAVMHNV----ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253 (322)
Q Consensus 178 ~A~~n~~~~~l----~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~ 253 (322)
.|++|+...++ ..++.+.++|. .+..+ ..++||.|+++-... ..+
T Consensus 125 ~a~~~l~~~~~~~~~~~nv~~~~~d~-----~~~~~---~~~~fD~Iiv~~a~~------~~p----------------- 173 (223)
T d1r18a_ 125 RSKANLNTDDRSMLDSGQLLIVEGDG-----RKGYP---PNAPYNAIHVGAAAP------DTP----------------- 173 (223)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEESCG-----GGCCG---GGCSEEEEEECSCBS------SCC-----------------
T ss_pred HHHHhhhhcchhhcCccEEEEEeccc-----ccccc---cccceeeEEEEeech------hch-----------------
Confidence 99999765422 13599999998 44332 456899999964321 111
Q ss_pred hhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 254 GLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 254 gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
....+.|+|||.+++-++..
T Consensus 174 ---------~~l~~~Lk~gG~lV~pvg~~ 193 (223)
T d1r18a_ 174 ---------TELINQLASGGRLIVPVGPD 193 (223)
T ss_dssp ---------HHHHHTEEEEEEEEEEESCS
T ss_pred ---------HHHHHhcCCCcEEEEEEecC
Confidence 12457899999999988743
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2e-11 Score=107.05 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=94.5
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-C---------------
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-N--------------- 190 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~--------------- 190 (322)
..+.+.+......+.++||+|||+|.+++..+... ..+|+|+|+|+.+++.++++++..... +
T Consensus 42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 120 (263)
T d2g72a1 42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 120 (263)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcccc
Confidence 33444443333345799999999998876555543 458999999999999999876532210 0
Q ss_pred -------------cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHH
Q psy7093 191 -------------QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257 (322)
Q Consensus 191 -------------~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~ 257 (322)
...+...|++.++.+... ....++||+|++.--.. .+.+ ..+-
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~--~~~~~~fD~V~~~~~l~------~i~~----------------~~~~ 176 (263)
T d2g72a1 121 ECWQDKERQLRARVKRVLPIDVHQPQPLGAG--SPAPLPADALVSAFCLE------AVSP----------------DLAS 176 (263)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSS--CSSCSSEEEEEEESCHH------HHCS----------------SHHH
T ss_pred chhhhhHHHhhhhhhccccccccCCCccccC--CcCcCccCeeeeHHHHH------HHcc----------------CHHH
Confidence 013455676333222221 12356899999842111 1110 1123
Q ss_pred HHHHHHHHhccCccCcEEEEEE----------------cCCCHHHHHHHHHHcCCCCceeeEE
Q psy7093 258 IKPICVFGSNYLKPNGSIFLET----------------NHDHLDKIKEWLGICGHHMKLKLVE 304 (322)
Q Consensus 258 ~~~~l~~~~~~Lk~gG~l~~e~----------------~~~~~~~~~~~l~~~~~~~~~~~v~ 304 (322)
++.+++++.++|||||.+++.. ..-..+.+.+++++.| |..++
T Consensus 177 ~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aG----f~v~~ 235 (263)
T d2g72a1 177 FQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG----YKVRD 235 (263)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT----EEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCC----CeEEE
Confidence 6789999999999999998732 1235789999999987 65443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=1.1e-11 Score=105.60 Aligned_cols=139 Identities=8% Similarity=0.172 Sum_probs=100.4
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|+.-.++..++...+. .+|||+|||+|..++.+|+.++ +.+|+++|+++..++.|+.|++..|+.++|+++.+
T Consensus 41 ~~~~G~lL~~lv~~~kp-----k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~G 115 (214)
T d2cl5a1 41 GDAKGQIMDAVIREYSP-----SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNG 115 (214)
T ss_dssp HHHHHHHHHHHHHHHCC-----SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred CHHHHHHHHHHHHhhCC-----CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeec
Confidence 45666777777766643 7899999999999999999875 58999999999999999999999999999999999
Q ss_pred cCCCcccccccCc---CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQP---DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~---~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|. .+.++. ....++||+|+.+--. +.. .....+..+.++|+|||+
T Consensus 116 d~-----~e~l~~l~~~~~~~~~D~ifiD~~~--------------------------~~~-~~~~~l~~~~~lLkpGGv 163 (214)
T d2cl5a1 116 AS-----QDLIPQLKKKYDVDTLDMVFLDHWK--------------------------DRY-LPDTLLLEKCGLLRKGTV 163 (214)
T ss_dssp CH-----HHHGGGHHHHSCCCCEEEEEECSCG--------------------------GGH-HHHHHHHHHTTCEEEEEE
T ss_pred cc-----cccccchhhcccccccceeeecccc--------------------------ccc-ccHHHHHHHhCccCCCcE
Confidence 98 444432 1234689999985210 000 011245667889999998
Q ss_pred EEEE--EcCCCHHHHHHHHHHcC
Q psy7093 275 IFLE--TNHDHLDKIKEWLGICG 295 (322)
Q Consensus 275 l~~e--~~~~~~~~~~~~l~~~~ 295 (322)
+++. .-++... ..+.++...
T Consensus 164 Iv~Ddvl~~g~~~-~~~~vr~~~ 185 (214)
T d2cl5a1 164 LLADNVIVPGTPD-FLAYVRGSS 185 (214)
T ss_dssp EEESCCCCCCCHH-HHHHHHHCT
T ss_pred EEEeCcCCCCChH-HHHHHhccC
Confidence 8762 2233343 344455543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1e-10 Score=98.55 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=112.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCch
Q psy7093 71 NTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGT 150 (322)
Q Consensus 71 ~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~Gs 150 (322)
.-.+++++.+++..+.+....-.-.--+++. .+...+ ....+++.+.- +... ++.+|+|+|||.
T Consensus 13 g~~ls~~q~~~L~~y~~ll~~~N~~~NLts~---------~~~~~~----~~rHi~DSl~~-~~~~--~~~~ilDiGsGa 76 (207)
T d1jsxa_ 13 GISLTDHQKNQLIAYVNMLHKWNKAYNLTSV---------RDPNEM----LVRHILDSIVV-APYL--QGERFIDVGTGP 76 (207)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC---------------------CH----HHHHHHHHHHH-GGGC--CSSEEEEETCTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCceeeEEC---------CCHHHH----HHHHhcchHhh-hhhh--cCCceeeeeccC
Confidence 4457888888888877665531111111111 011111 12333333221 1222 237899999999
Q ss_pred hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 151 GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 151 G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
|..++.+|-.+|+.+++.+|.+..-+...++-+..+++.+ +++++.++ . ... ...+||+|++-
T Consensus 77 G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~-----E-~~~---~~~~fD~V~sR------- 139 (207)
T d1jsxa_ 77 GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRV-----E-EFP---SEPPFDGVISR------- 139 (207)
T ss_dssp TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCT-----T-TSC---CCSCEEEEECS-------
T ss_pred CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccch-----h-hhc---cccccceehhh-------
Confidence 9999999999999999999999999999999899999864 99999998 2 221 34589999982
Q ss_pred CCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHH
Q psy7093 231 DIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEW 290 (322)
Q Consensus 231 ~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~ 290 (322)
.+-| +..+++.+..++++||.+++--|....+++..+
T Consensus 140 ----------A~~~-------------~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~ 176 (207)
T d1jsxa_ 140 ----------AFAS-------------LNDMVSWCHHLPGEQGRFYALKGQMPEDEIALL 176 (207)
T ss_dssp ----------CSSS-------------HHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTS
T ss_pred ----------hhcC-------------HHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhh
Confidence 1111 457999999999999999998898877766543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.25 E-value=1.6e-11 Score=105.15 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=98.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|+.-.++..+++..+. ++|||+||++|+-++.+|..+| +.+++.+|.++...+.|++|+++.|+.++++++.+
T Consensus 44 ~~~~g~~L~~L~~~~~~-----k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g 118 (227)
T d1susa1 44 SADEGQFLSMLLKLINA-----KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 118 (227)
T ss_dssp CHHHHHHHHHHHHHHTC-----CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred CHHHHHHHHHHHHhcCC-----CcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh
Confidence 45666677777776643 7999999999999999999886 58999999999999999999999999999999999
Q ss_pred cCCCcccccccCcC----cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 198 EIDSKGQVKNLQPD----LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 198 D~~~~~~~~~l~~~----~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|+ .+.++.. ...++||+|+.+-- . ..|...++.+.++|+|||
T Consensus 119 ~a-----~~~L~~l~~~~~~~~~fD~iFiDa~------k-----------------------~~y~~~~e~~~~ll~~gG 164 (227)
T d1susa1 119 PA-----LPVLDEMIKDEKNHGSYDFIFVDAD------K-----------------------DNYLNYHKRLIDLVKVGG 164 (227)
T ss_dssp CH-----HHHHHHHHHCGGGTTCBSEEEECSC------S-----------------------TTHHHHHHHHHHHBCTTC
T ss_pred HH-----HHHHHHHHhccccCCceeEEEeccc------h-----------------------hhhHHHHHHHHhhcCCCc
Confidence 98 5544321 12468999999621 0 016678888999999999
Q ss_pred EEEEE
Q psy7093 274 SIFLE 278 (322)
Q Consensus 274 ~l~~e 278 (322)
++++.
T Consensus 165 iii~D 169 (227)
T d1susa1 165 VIGYD 169 (227)
T ss_dssp CEEEE
T ss_pred EEEEc
Confidence 99884
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.8e-11 Score=117.62 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=101.0
Q ss_pred CCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC------------------CCEEEEEeCCHHH
Q psy7093 114 PVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP------------------KLKAIAIDQSKHA 175 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~------------------~~~v~~vDis~~a 175 (322)
..|+|++-. +.+++.+.... +.+|+|++||||.+.+.+.+.+. ...++|+|+++.+
T Consensus 145 qfyTP~~Iv----~~mv~ll~~~~--~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~ 218 (524)
T d2ar0a1 145 QYFTPRPLI----KTIIHLLKPQP--REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT 218 (524)
T ss_dssp CCCCCHHHH----HHHHHHHCCCT--TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred hhccccchh----HhhhhcccCcc--chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHH
Confidence 356676654 44455555442 36899999999999988876431 1258999999999
Q ss_pred HHHHHHHHHHcCCCCc----EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 176 CDLTEQNAVMHNVANQ----LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 176 l~~A~~n~~~~~l~~~----i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
...|+.|+..++.... -.+..++. +..- .....+||+|++||||.......... .+.+ .
T Consensus 219 ~~la~~nl~l~~~~~~i~~~~~~~~~~~-----l~~d--~~~~~kfD~Ii~NPPfg~~~~~~~~~----~~~~------~ 281 (524)
T d2ar0a1 219 RRLALMNCLLHDIEGNLDHGGAIRLGNT-----LGSD--GENLPKAHIVATNPPFGSAAGTNITR----TFVH------P 281 (524)
T ss_dssp HHHHHHHHHTTTCCCBGGGTBSEEESCT-----TSHH--HHTSCCEEEEEECCCCTTCSSCCCCS----CCSS------C
T ss_pred HHHHHHHHHhhcccccccccchhhhhhh-----hhhc--ccccccceeEEecCCccccccccchh----hhcc------c
Confidence 9999999988775421 12334443 2110 11346899999999997544322111 1111 1
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEEcC------CCHHHHHHHHHHcC
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLETNH------DHLDKIKEWLGICG 295 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~------~~~~~~~~~l~~~~ 295 (322)
.. ...-.++..+.++|++||.+.+.++. .....+++.+-+.+
T Consensus 282 ~~--~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~ 329 (524)
T d2ar0a1 282 TS--NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 329 (524)
T ss_dssp CS--CHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred cc--cccHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC
Confidence 11 11336899999999999999887742 22456777776654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1e-11 Score=112.52 Aligned_cols=120 Identities=12% Similarity=0.196 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-------CC-CCcE
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH-------NV-ANQL 192 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~-------~l-~~~i 192 (322)
....++..+++.+.-.+ +.+|||+|||+|.+++.+|+..+..+++|+|+|+.+++.|+.+.+.. |. ..++
T Consensus 135 ~~~~~~~~~~~~~~l~~--~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i 212 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIKMTD--DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212 (328)
T ss_dssp CCHHHHHHHHHHSCCCT--TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred hHHHHHHHHHHHcCCCC--CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 34566777887776543 37999999999999999999988889999999999999999886543 22 2469
Q ss_pred EEEEccCCCcccccccCcCcCC--CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 193 QVFHAEIDSKGQVKNLQPDLLE--QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 193 ~~~~~D~~~~~~~~~l~~~~~~--~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
+++++|+ .+. + +.. ...|+|++|--++. ++ ....+.+..+.||
T Consensus 213 ~~~~gd~-----~~~-~--~~~~~~~advi~~~~~~f~--------~~-------------------~~~~l~e~~r~LK 257 (328)
T d1nw3a_ 213 TLERGDF-----LSE-E--WRERIANTSVIFVNNFAFG--------PE-------------------VDHQLKERFANMK 257 (328)
T ss_dssp EEEECCT-----TSH-H--HHHHHHHCSEEEECCTTTC--------HH-------------------HHHHHHHHHTTCC
T ss_pred EEEECcc-----ccc-c--cccccCcceEEEEcceecc--------hH-------------------HHHHHHHHHHhCC
Confidence 9999998 221 1 111 12578888632111 11 3467788889999
Q ss_pred cCcEEEE
Q psy7093 271 PNGSIFL 277 (322)
Q Consensus 271 ~gG~l~~ 277 (322)
|||.+++
T Consensus 258 pGg~iv~ 264 (328)
T d1nw3a_ 258 EGGRIVS 264 (328)
T ss_dssp TTCEEEE
T ss_pred CCcEEEE
Confidence 9999876
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.2e-11 Score=107.51 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHHh----CCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE--EEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKH----FPK--LKAIAIDQSKHACDLTEQNAVMHNVANQLQV--FHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~----~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~i~~--~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||+|||+|.++..++.. +++ ..++|+|.|+.+++.|++++........+.+ .+.++. ..........
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 119 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSS--EYQSRMLEKK 119 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHH--HHHHHHTTSS
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhh--hhcchhcccC
Confidence 47999999999998887764 333 4689999999999999999866543333444 333320 0000011123
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
..++||+|++.--++...+ ...+++.+.++|+|||.+++.+
T Consensus 120 ~~~~fD~I~~~~~l~~~~d--------------------------~~~~l~~l~~~LkpgG~l~i~~ 160 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKD--------------------------IPATLKFFHSLLGTNAKMLIIV 160 (280)
T ss_dssp SCCCEEEEEEESCGGGCSC--------------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCceeEEEEccceecCCC--------------------------HHHHHHHHHhhCCCCCEEEEEE
Confidence 5679999999644333222 3479999999999999988865
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=3.8e-10 Score=99.86 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=117.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|+|.|.=+..++....+..|+++|+++.-++..++|++++|+.+ +.+...|. ... .....+.||
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~-----~~~--~~~~~~~fd 173 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGR-----YPS--QWCGEQQFD 173 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTT-----CTH--HHHTTCCEE
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeecccc-----ccc--hhccccccc
Confidence 3479999999999999999988777899999999999999999999999864 44444444 111 111346899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC----CHHHHHHHHHHc
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD----HLDKIKEWLGIC 294 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~----~~~~~~~~l~~~ 294 (322)
.|+.++|....+.+..-+.-...+.+.... .=...-++++..+.++|+|||.+++.++.- ..+.+..+++++
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~----~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~ 249 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIP----ELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT 249 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHH----HHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred EEEEeccccccCccccccchhhccccchhh----HHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhC
Confidence 999999988776654433322222221100 012335799999999999999999988753 356678888886
Q ss_pred CCCCceee----------EEEecCCCCCCeEEEEE
Q psy7093 295 GHHMKLKL----------VENYKDFNNKDRFVELK 319 (322)
Q Consensus 295 ~~~~~~~~----------v~~~~D~~g~~R~~~~~ 319 (322)
.. |.. ..++.+..+.+-|.++.
T Consensus 250 ~~---~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~ 281 (284)
T d1sqga2 250 AD---AELCETGTPEQPGKQNLPGAEEGDGFFYAK 281 (284)
T ss_dssp TT---CEECSSBCSSSBSEEECCCTTSCCSEEEEE
T ss_pred CC---cEEecCCCCCCCcEEECCCCCCcccEEEEE
Confidence 52 443 34555666667676654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.12 E-value=2.1e-10 Score=102.77 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=101.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--C--CCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--N--VANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~--l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
+++||.+|.|.|..+..+++..+..+|++||+++..+++|++..... + -..|++++.+|+ .+.+.. ...
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da-----~~~l~~--~~~ 150 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA-----RAYLER--TEE 150 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH-----HHHHHH--CCC
T ss_pred cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH-----HHHhhh--cCC
Confidence 48999999999999999998877889999999999999999986432 1 145899999999 655532 356
Q ss_pred CeeEEEEcCC--CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC--CH----HHH
Q psy7093 216 KFDLVVSNPP--YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD--HL----DKI 287 (322)
Q Consensus 216 ~fDlIv~NPP--y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~--~~----~~~ 287 (322)
+||+|+++++ +.... |...|+ -+.+++.+.+.|+|||++++..+.. .. ..+
T Consensus 151 ~yDvIi~D~~dp~~~~~-------------~~~~L~--------t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i 209 (312)
T d1uira_ 151 RYDVVIIDLTDPVGEDN-------------PARLLY--------TVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVV 209 (312)
T ss_dssp CEEEEEEECCCCBSTTC-------------GGGGGS--------SHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHH
T ss_pred cccEEEEeCCCcccccc-------------hhhhhh--------hHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHH
Confidence 8999998763 32111 111111 2478889999999999999866422 22 223
Q ss_pred HHHHHHcCCCCceeeEEEecC----CCCCCeEEEEEE
Q psy7093 288 KEWLGICGHHMKLKLVENYKD----FNNKDRFVELKL 320 (322)
Q Consensus 288 ~~~l~~~~~~~~~~~v~~~~D----~~g~~R~~~~~~ 320 (322)
.+.+++. |..|..+.. +-+..-|+.+.+
T Consensus 210 ~~tl~~~-----F~~V~~y~~~vPs~~~~w~f~~aS~ 241 (312)
T d1uira_ 210 HRTVREA-----FRYVRSYKNHIPGFFLNFGFLLASD 241 (312)
T ss_dssp HHHHHTT-----CSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred HHHHHHh-----CceEEEEEeeeCCcCCCCEeEEEeC
Confidence 3444443 566766543 222345666665
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=99.12 E-value=2.1e-09 Score=92.12 Aligned_cols=195 Identities=11% Similarity=0.204 Sum_probs=126.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhcc---CC-CCCCeEEEE
Q psy7093 71 NTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLES---SN-HTPTRMIEI 146 (322)
Q Consensus 71 ~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~---~~-~~~~~iLDl 146 (322)
...+++++.+++..+++...+-....-+++. +...+.+...+++.+.. .. ....+++|+
T Consensus 15 g~~ls~~~~~~l~~y~~lL~~wN~~~NLts~-----------------~~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDi 77 (239)
T d1xdza_ 15 GISLSPRQLEQFELYYDMLVEWNEKINLTSI-----------------TEKKEVYLKHFYDSITAAFYVDFNQVNTICDV 77 (239)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHSCCCSC-----------------CSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCceEEEec-----------------CCHHHHHHHhccchhhhhhhhcccCCCeEEee
Confidence 3457888888888776665531111111111 22223334445544321 10 123689999
Q ss_pred cCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCCCCeeEEEEcCC
Q psy7093 147 GSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLEQKFDLVVSNPP 225 (322)
Q Consensus 147 g~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~~~fDlIv~NPP 225 (322)
|||.|.-++.+|-.+|+.+++.+|.+..-+...+.-...+++.+ +.++++.+ +.+.. ....++||+|++=
T Consensus 78 GSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~------E~~~~~~~~~~~~D~v~sR-- 148 (239)
T d1xdza_ 78 GAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRA------ETFGQRKDVRESYDIVTAR-- 148 (239)
T ss_dssp CSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCH------HHHTTCTTTTTCEEEEEEE--
T ss_pred cCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehh------hhccccccccccceEEEEh--
Confidence 99999999999999999999999999999999998889999875 88888877 22211 1124689999992
Q ss_pred CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHH---HHcCCCCceee
Q psy7093 226 YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWL---GICGHHMKLKL 302 (322)
Q Consensus 226 y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l---~~~~~~~~~~~ 302 (322)
.+-+ ...+++.+..++++||.+++--|....+++.+.- ...+. .+..
T Consensus 149 ---------------Ava~-------------l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~--~~~~ 198 (239)
T d1xdza_ 149 ---------------AVAR-------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGG--ELEN 198 (239)
T ss_dssp ---------------CCSC-------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTE--EEEE
T ss_pred ---------------hhhC-------------HHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCC--EEEE
Confidence 1111 4579999999999999999988988877776643 33331 1223
Q ss_pred EEEec--CCCCCCeEEEEEEc
Q psy7093 303 VENYK--DFNNKDRFVELKLV 321 (322)
Q Consensus 303 v~~~~--D~~g~~R~~~~~~~ 321 (322)
+..+. -..+..++|+++|.
T Consensus 199 v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 199 IHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp EEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEeCCCCCCCEEEEEEEEC
Confidence 32222 23344456666663
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=1.1e-10 Score=107.76 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-------C-CCcEEE
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN-------V-ANQLQV 194 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~-------l-~~~i~~ 194 (322)
..++..+++.+.-.+ +.+|||||||+|.+++.+|...+..+|+|+|+|+.+++.|+++++..+ . ...+.+
T Consensus 202 ~~~i~~Il~~l~Lkp--gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 202 PNFLSDVYQQCQLKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp HHHHHHHHHHTTCCT--TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHHhCCCC--CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 346777777776553 389999999999999999999888899999999999999999987532 1 112333
Q ss_pred -EEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 195 -FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 195 -~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
..++. +...........+|+|++|- +.. .++ ....+.++.+.|||||
T Consensus 280 ~~~~~f-----~~~~~~d~~~~~adVV~inn-~~f-------~~~-------------------l~~~L~ei~r~LKPGG 327 (406)
T d1u2za_ 280 SLKKSF-----VDNNRVAELIPQCDVILVNN-FLF-------DED-------------------LNKKVEKILQTAKVGC 327 (406)
T ss_dssp EESSCS-----TTCHHHHHHGGGCSEEEECC-TTC-------CHH-------------------HHHHHHHHHTTCCTTC
T ss_pred eeeech-----hhccccccccccceEEEEec-ccC-------chH-------------------HHHHHHHHHHhcCCCc
Confidence 23443 11100000123578888862 110 111 3478888999999999
Q ss_pred EEEE
Q psy7093 274 SIFL 277 (322)
Q Consensus 274 ~l~~ 277 (322)
.++.
T Consensus 328 rIVs 331 (406)
T d1u2za_ 328 KIIS 331 (406)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9876
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=5.4e-10 Score=99.05 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=116.3
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
.+|.-+.++....+-..+.....+.+....-.....+++||-+|.|.|.++..+++..+..+|++||+++..++.|++..
T Consensus 54 ~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~ 133 (295)
T d1inla_ 54 DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYL 133 (295)
T ss_dssp TTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHC
T ss_pred CcceEEEECCEEEEecCchhhhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence 34666666655554333322333333221111111348999999999999999999877789999999999999999876
Q ss_pred HHcC--C-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHH
Q psy7093 184 VMHN--V-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260 (322)
Q Consensus 184 ~~~~--l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~ 260 (322)
.... + ..|++++.+|. .+.+.. ..++||+|+++++-..... ...|+ -+.
T Consensus 134 ~~~~~~~~d~rv~v~~~Da-----~~~l~~--~~~~yDvIi~D~~dp~~~~-------------~~~L~--------t~e 185 (295)
T d1inla_ 134 KQTSCGFDDPRAEIVIANG-----AEYVRK--FKNEFDVIIIDSTDPTAGQ-------------GGHLF--------TEE 185 (295)
T ss_dssp HHHHGGGGCTTEEEEESCH-----HHHGGG--CSSCEEEEEEEC-----------------------CC--------SHH
T ss_pred HhhcccccCCCcEEEhhhH-----HHHHhc--CCCCCCEEEEcCCCCCcCc-------------hhhhc--------cHH
Confidence 4321 1 46899999998 666643 3568999999864321111 00111 247
Q ss_pred HHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHcCCCCceeeEEEec---CC--CCCCeEEEEEE
Q psy7093 261 ICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGICGHHMKLKLVENYK---DF--NNKDRFVELKL 320 (322)
Q Consensus 261 ~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~~~~~~~~~v~~~~---D~--~g~~R~~~~~~ 320 (322)
+++.+.+.|+|||++++..+. .+.+.+..+++.-.. -|..+..+. -. .|..-|+.+.+
T Consensus 186 fy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~--vF~~v~~y~~~vPtyp~G~w~f~~aSk 250 (295)
T d1inla_ 186 FYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISK--VFPITRVYLGFMTTYPSGMWSYTFASK 250 (295)
T ss_dssp HHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHH--HCSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred HHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHh--hcceeEEEEeeeceecCcccEEEEEeC
Confidence 888999999999999987764 345555554433211 244554432 22 25567777765
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.5e-09 Score=94.90 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=96.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|+|.|.-+..+|... +..+|+++|+++.-++..++|++++|+.+ +.+...|. ....+.....++||
T Consensus 95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~-----~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDF-----LAVSPSDPRYHEVH 168 (293)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCG-----GGSCTTCGGGTTEE
T ss_pred cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhh-----hhhcccccccceee
Confidence 4789999999999999988764 45789999999999999999999999875 88988887 32211111236799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCC---h-hHHHHHHHHHHhccCccCcEEEEEEcC----CCHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD---G-LNIIKPICVFGSNYLKPNGSIFLETNH----DHLDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~---g-l~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~~~~~ 290 (322)
.|+.+||....+.+...+.......+ ... . ....+.++..+.. |+|||.+++.++. ...+.+..+
T Consensus 169 ~VL~DaPCSg~G~~~r~p~~~~~~~~------~~~~~~~l~~~Q~~il~~a~~-l~~gG~lvYsTCSl~~~ENe~vV~~~ 241 (293)
T d2b9ea1 169 YILLDPSCSGSGMPSRQLEEPGAGTP------SPVRLHALAGFQQRALCHALT-FPSLQRLVYSTCSLCQEENEDVVRDA 241 (293)
T ss_dssp EEEECCCCCC------------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEEEEESCCCGGGTHHHHHHH
T ss_pred EEeecCcccchhhhcccchhhccCCc------chhhHHHHhhhhHHhHHHhhh-cccccEEEEeeccCChhHhHHHHHHH
Confidence 99999998776654332221111111 111 1 1234567888884 7999999998875 345667777
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
++++.
T Consensus 242 L~~~~ 246 (293)
T d2b9ea1 242 LQQNP 246 (293)
T ss_dssp HTTST
T ss_pred HHhCC
Confidence 77664
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.06 E-value=2e-09 Score=94.44 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=105.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-CC--CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH-NV--ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~-~l--~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+||-+|.|.|..+..+++..+..+|+.||+++..++.|++..... +. ..|++++.+|. ...+.. ...+
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~-----~~~l~~--~~~~ 148 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG-----FMHIAK--SENQ 148 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS-----HHHHHT--CCSC
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH-----HHHHhh--cCCC
Confidence 48999999999999999998877789999999999999999876432 21 45899999998 555542 3568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~ 294 (322)
||+|+++++-..... ..|+ -+.+++.+.+.|+|||+++...+. .+.+.+..+++..
T Consensus 149 yDvIi~D~~~p~~~~--------------~~L~--------t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl 206 (274)
T d1iy9a_ 149 YDVIMVDSTEPVGPA--------------VNLF--------TKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDV 206 (274)
T ss_dssp EEEEEESCSSCCSCC--------------CCCS--------TTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCcc--------------hhhc--------cHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhh
Confidence 999999875321111 1111 247888899999999999987653 3455555555443
Q ss_pred CCCCceeeEEEecCC-----CCCCeEEEEEE
Q psy7093 295 GHHMKLKLVENYKDF-----NNKDRFVELKL 320 (322)
Q Consensus 295 ~~~~~~~~v~~~~D~-----~g~~R~~~~~~ 320 (322)
.. -|..+..+.-. .|..-|+.+.+
T Consensus 207 ~~--~F~~v~~y~~~vPsy~~g~w~f~~aS~ 235 (274)
T d1iy9a_ 207 KE--IFPITKLYTANIPTYPSGLWTFTIGSK 235 (274)
T ss_dssp HT--TCSEEEEEEECCTTSGGGCEEEEEEES
T ss_pred hh--hcCceEEEEEEeeecCCCceEEEEEcC
Confidence 21 26666655421 25566666654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.04 E-value=3.2e-09 Score=91.69 Aligned_cols=133 Identities=13% Similarity=0.184 Sum_probs=94.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.+++++|+.+++..|+. ..+ ...+..++++++.+|+ ++.++ ..|++
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~ri~~~~gd~-----~~~~p------~~D~~ 143 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVI-------ENAPPLSGIEHVGGDM-----FASVP------QGDAM 143 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCCTTEEEEECCT-----TTCCC------CEEEE
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhh-------hccCCCCCeEEecCCc-----ccccc------cceEE
Confidence 68999999999999999999999999999984 333 2344467899999999 65542 35988
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EE--cC----------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ET--NH---------------- 281 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~--~~---------------- 281 (322)
+..-- ++..+++. ..++++++.+.|+|||.+++ |. ..
T Consensus 144 ~l~~v------Lh~~~de~------------------~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~ 199 (244)
T d1fp1d2 144 ILKAV------CHNWSDEK------------------CIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDN 199 (244)
T ss_dssp EEESS------GGGSCHHH------------------HHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHH
T ss_pred EEehh------hhhCCHHH------------------HHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHH
Confidence 87322 22222222 45899999999999997665 42 10
Q ss_pred ----------CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 282 ----------DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 282 ----------~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+..++..+++++.| |+.++++.--.+..-++.+.|
T Consensus 200 ~m~~~~~g~ert~~e~~~ll~~AG----F~~v~v~~~~~~~~~viE~~K 244 (244)
T d1fp1d2 200 LMFITVGGRERTEKQYEKLSKLSG----FSKFQVACRAFNSLGVMEFYK 244 (244)
T ss_dssp HHHHHHSCCCEEHHHHHHHHHHTT----CSEEEEEEEETTTEEEEEEEC
T ss_pred HHHhhCCCcCCCHHHHHHHHHHcC----CCceEEEecCCCCEEEEEEeC
Confidence 12456677888876 788888754445555665554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=6.6e-09 Score=92.92 Aligned_cols=144 Identities=18% Similarity=0.080 Sum_probs=101.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|||+|+|.|.=+..++.... ...++++|+++.-++..+.|+++++..+ +.+...|. ... . .....|
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~-----~~~-~--~~~~~f 186 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSS-----LHI-G--ELNVEF 186 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCG-----GGG-G--GGCCCE
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccc-----ccc-c--cccccc
Confidence 347999999999999999988754 5689999999999999999999999865 77777776 221 1 135689
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC----CHHHHHHHHHH
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD----HLDKIKEWLGI 293 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~----~~~~~~~~l~~ 293 (322)
|.|+.+||....+.+..-+.......+... ..-.....+++..+.++|||||.+++.++.- ....+..++++
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~ 262 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDI----KFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 262 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHH----HHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHH----HHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhc
Confidence 999999998877655432222111111000 0011345789999999999999999988753 35667777776
Q ss_pred cC
Q psy7093 294 CG 295 (322)
Q Consensus 294 ~~ 295 (322)
++
T Consensus 263 ~~ 264 (313)
T d1ixka_ 263 FD 264 (313)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.03 E-value=2.3e-09 Score=94.27 Aligned_cols=148 Identities=12% Similarity=0.144 Sum_probs=100.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---------CCCCcEEEEEccCCCcccccccCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH---------NVANQLQVFHAEIDSKGQVKNLQP 210 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~---------~l~~~i~~~~~D~~~~~~~~~l~~ 210 (322)
+.+||-+|+|.|..+..+++. +..+|+.||+++..+++|++..... ....|++++.+|+ ...+.
T Consensus 73 p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da-----~~~l~- 145 (276)
T d1mjfa_ 73 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG-----FEFIK- 145 (276)
T ss_dssp CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH-----HHHHH-
T ss_pred CceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChH-----HHHHh-
Confidence 489999999999999988875 6679999999999999999754321 2246899999998 55553
Q ss_pred CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHH
Q psy7093 211 DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIK 288 (322)
Q Consensus 211 ~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~ 288 (322)
..++||+||++++-.. .... .|+ -+.+++.+.+.|+|||++++..+. .+...+.
T Consensus 146 --~~~~yDvIi~D~~~~~-~~~~-------------~L~--------t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~ 201 (276)
T d1mjfa_ 146 --NNRGFDVIIADSTDPV-GPAK-------------VLF--------SEEFYRYVYDALNNPGIYVTQAGSVYLFTDELI 201 (276)
T ss_dssp --HCCCEEEEEEECCCCC-------------------TT--------SHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHH
T ss_pred --ccCCCCEEEEeCCCCC-CCcc-------------ccc--------CHHHHHhhHhhcCCCceEEEecCCcchhHHHHH
Confidence 2468999999875321 1100 111 247889999999999999987653 3455555
Q ss_pred HHHHHcCCCCceeeEEEec----CCCCCCeEEEEEE
Q psy7093 289 EWLGICGHHMKLKLVENYK----DFNNKDRFVELKL 320 (322)
Q Consensus 289 ~~l~~~~~~~~~~~v~~~~----D~~g~~R~~~~~~ 320 (322)
.+++.-.. .|..+..+. =+.|..-|+.+.+
T Consensus 202 ~~~~tl~~--~F~~v~~y~~~vP~y~~~w~f~~as~ 235 (276)
T d1mjfa_ 202 SAYKEMKK--VFDRVYYYSFPVIGYASPWAFLVGVK 235 (276)
T ss_dssp HHHHHHHH--HCSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred HHHHHHHh--hCCeeEEEEecCcCCCCceEEEEEeC
Confidence 54443211 255565543 2234456666654
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=6.8e-10 Score=101.72 Aligned_cols=102 Identities=15% Similarity=0.162 Sum_probs=81.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------------cEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN--------------QLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~--------------~i~~~~~D~~~~~~~~ 206 (322)
.+|||..||||..++..|++.+..+|+++|+|+.+++++++|++.++..+ .+.+.+.|+ ..
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da-----~~ 121 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA-----NR 121 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH-----HH
T ss_pred CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh-----hh
Confidence 79999999999999999998887899999999999999999999987643 355666665 22
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+. .....||+|..+| |.+. ..++..|.+.++.||+|.+..
T Consensus 122 ~~~--~~~~~fDvIDiDP-fGs~-----------------------------~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 122 LMA--ERHRYFHFIDLDP-FGSP-----------------------------MEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHH--HSTTCEEEEEECC-SSCC-----------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhH--hhcCcCCcccCCC-CCCc-----------------------------HHHHHHHHHHhccCCEEEEEe
Confidence 221 1345799999997 5432 268888999999999998843
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.2e-09 Score=93.64 Aligned_cols=182 Identities=14% Similarity=0.195 Sum_probs=113.1
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
+|.-+.++....+...+.....+.+....-.....+++||-+|.|.|.++..+.+..+..+|+.+|+++..++.|++...
T Consensus 44 ~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~ 123 (285)
T d2o07a1 44 YGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP 123 (285)
T ss_dssp SCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCeEEEECCcEEEecCCHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhch
Confidence 45666666444443333222233332221111123489999999999999999988777899999999999999998654
Q ss_pred Hc---CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 185 MH---NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 185 ~~---~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
.. --..|++++.+|. ...+.. ..++||+||++++- +... ...| +-+.+
T Consensus 124 ~~~~~~~d~rv~i~~~Da-----~~~l~~--~~~~yDvIi~D~~~-p~~~-------------~~~L--------~t~eF 174 (285)
T d2o07a1 124 GMAIGYSSSKLTLHVGDG-----FEFMKQ--NQDAFDVIITDSSD-PMGP-------------AESL--------FKESY 174 (285)
T ss_dssp HHHGGGGCTTEEEEESCH-----HHHHHT--CSSCEEEEEEECC---------------------------------CHH
T ss_pred hhccccCCCCceEEEccH-----HHHHhc--CCCCCCEEEEcCCC-CCCc-------------cccc--------ccHHH
Confidence 32 1146899999998 555542 34689999998642 1110 0011 13478
Q ss_pred HHHHhccCccCcEEEEEEcC--CCHHHHHHH---HHHcCCCCceeeEEEe----cCC-CCCCeEEEEEE
Q psy7093 262 CVFGSNYLKPNGSIFLETNH--DHLDKIKEW---LGICGHHMKLKLVENY----KDF-NNKDRFVELKL 320 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~---l~~~~~~~~~~~v~~~----~D~-~g~~R~~~~~~ 320 (322)
++.+.+.|+|||++++..+. .+.+.+..+ +++. |..+..+ .-+ .|..-|+.+.+
T Consensus 175 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~-----F~~v~~y~~~vP~~~~g~w~f~~aSk 238 (285)
T d2o07a1 175 YQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSL-----FPVVAYAYCTIPTYPSGQIGFMLCSK 238 (285)
T ss_dssp HHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHH-----CSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred HHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhc-----CCeeeEEeeeeeecCCCCeEEEEEEC
Confidence 88999999999999987654 344444444 4443 4455432 222 24456777665
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.93 E-value=1.7e-09 Score=92.90 Aligned_cols=93 Identities=27% Similarity=0.396 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+++.+++.+.... +.+|||+|||+|.++..+++. +.+|+++|+++..++.++++.... ++++++++|+
T Consensus 7 ~~i~~~iv~~~~~~~--~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~--- 76 (235)
T d1qama_ 7 KHNIDKIMTNIRLNE--HDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDI--- 76 (235)
T ss_dssp HHHHHHHHTTCCCCT--TCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCG---
T ss_pred HHHHHHHHHhcCCCC--CCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhh---
Confidence 345677777765443 389999999999999999998 679999999999999998765432 4699999999
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
++.- ++......||+|.||.-+.
T Consensus 77 --l~~~---~~~~~~~~vv~NLPYnIss 99 (235)
T d1qama_ 77 --LQFK---FPKNQSYKIFGNIPYNIST 99 (235)
T ss_dssp --GGCC---CCSSCCCEEEEECCGGGHH
T ss_pred --hhcc---ccccccceeeeeehhhhhH
Confidence 4431 2233445789999997543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=98.93 E-value=4.9e-10 Score=96.64 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=83.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC----C------------------------------------CCEEEEEeCCHHHHHHH-
Q psy7093 141 TRMIEIGSGTGAITISLLKHF----P------------------------------------KLKAIAIDQSKHACDLT- 179 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~----~------------------------------------~~~v~~vDis~~al~~A- 179 (322)
..++|.+||||+|.+..|..- | ...++|.|+++.+++.|
T Consensus 52 ~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~ 131 (249)
T d1o9ga_ 52 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR 131 (249)
T ss_dssp EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHH
Confidence 579999999999999887631 0 12478999999999998
Q ss_pred --HHHHHHcCCCCcEEEEEccCCCcccccccCc--CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh
Q psy7093 180 --EQNAVMHNVANQLQVFHAEIDSKGQVKNLQP--DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL 255 (322)
Q Consensus 180 --~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~--~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl 255 (322)
++|+...++...+++.+.|+ ++..+. .......++||+||||...-+.. ++.+-
T Consensus 132 ~~r~n~~~Agl~~~i~i~~~d~-----f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~-----------------~~~~~ 189 (249)
T d1o9ga_ 132 RLRERLTAEGGALPCAIRTADV-----FDPRALSAVLAGSAPDVVLTDLPYGERTHWE-----------------GQVPG 189 (249)
T ss_dssp HHHHHHHHTTSSCCEEEEECCT-----TCGGGHHHHHTTCCCSEEEEECCGGGSSSSS-----------------SCCCH
T ss_pred HHHHHHHHcCCCceeeeeecch-----hccCcchhccCCCCCCEEEeCCCcccccccc-----------------ccchH
Confidence 46899999988899999998 433211 11234678999999998654321 11123
Q ss_pred HHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 256 NIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 256 ~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+.|+.+.....+.+. +-.+++.++.
T Consensus 190 ~~~~~~~~~l~~~~p-~~s~~~it~~ 214 (249)
T d1o9ga_ 190 QPVAGLLRSLASALP-AHAVIAVTDR 214 (249)
T ss_dssp HHHHHHHHHHHHHSC-TTCEEEEEES
T ss_pred HHHHHHHHHHHccCC-CCcEEEEeCc
Confidence 557788888888884 4444444543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.86 E-value=2.6e-09 Score=95.03 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=99.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V-ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+++||-+|.|.|.++..+++..+..+|+.||+++..++.|++...... + ..|++++.+|. ...+.. ...+
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da-----~~~l~~--~~~~ 179 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG-----FEFLKN--HKNE 179 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH-----HHHHHH--CTTC
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH-----HHHHHh--CCCC
Confidence 489999999999999999988666899999999999999998754321 1 35899999998 555532 3568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~ 294 (322)
||+||++++-. .. |...| +-+.+++.+.+.|+|||+++...+. .+.+.+..+++..
T Consensus 180 yDvII~D~~dp-~~-------------~~~~L--------~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l 237 (312)
T d2b2ca1 180 FDVIITDSSDP-VG-------------PAESL--------FGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFN 237 (312)
T ss_dssp EEEEEECCC-----------------------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred CCEEEEcCCCC-CC-------------cchhh--------hhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHh
Confidence 99999986421 11 11111 1357889999999999999987653 3444444444322
Q ss_pred CCCCceeeEEEec----CC-CCCCeEEEEEE
Q psy7093 295 GHHMKLKLVENYK----DF-NNKDRFVELKL 320 (322)
Q Consensus 295 ~~~~~~~~v~~~~----D~-~g~~R~~~~~~ 320 (322)
.. .|..+..+. .+ .|..-|+.+.+
T Consensus 238 ~~--vF~~v~~y~~~vPtyp~G~w~f~~aSk 266 (312)
T d2b2ca1 238 RK--IFPAVTYAQSIVSTYPSGSMGYLICAK 266 (312)
T ss_dssp HH--HCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred hh--ccceEEEeeeccCCcCCccceeeEEEC
Confidence 10 244454332 22 25666777765
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.85 E-value=2.7e-08 Score=87.82 Aligned_cols=159 Identities=18% Similarity=0.211 Sum_probs=103.5
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
+|.-+.++..+..-..+.....+.+....-.....+++||=+|.|.|.++..+++..+..+++.||+++..++.|++...
T Consensus 46 ~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~ 125 (290)
T d1xj5a_ 46 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFP 125 (290)
T ss_dssp SCEEEEETTEEEEETTTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCeEEEECCeEeeeccchhHHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhch
Confidence 45555555544432222222233333222111223589999999999999999998777799999999999999998653
Q ss_pred Hc---CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 185 MH---NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 185 ~~---~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
.. .-..|++++.+|. .+.+.. ...++||+||++.+- +.. |...|+ -+.+
T Consensus 126 ~~~~~~~~~r~~i~~~Da-----~~~l~~-~~~~~yDvIi~D~~d-p~~-------------~~~~L~--------t~eF 177 (290)
T d1xj5a_ 126 DVAIGYEDPRVNLVIGDG-----VAFLKN-AAEGSYDAVIVDSSD-PIG-------------PAKELF--------EKPF 177 (290)
T ss_dssp HHHGGGGSTTEEEEESCH-----HHHHHT-SCTTCEEEEEECCCC-TTS-------------GGGGGG--------SHHH
T ss_pred hhhccccCCCcEEEEccH-----HHHHhh-ccccCccEEEEcCCC-CCC-------------cchhhC--------CHHH
Confidence 32 1246899999998 555532 234689999998642 110 111111 3578
Q ss_pred HHHHhccCccCcEEEEEEcCC--CHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNHD--HLDKIKEWL 291 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~--~~~~~~~~l 291 (322)
++.+.+.|+|||++++..+.. +.+.+..++
T Consensus 178 ~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~ 209 (290)
T d1xj5a_ 178 FQSVARALRPGGVVCTQAESLWLHMDIIEDIV 209 (290)
T ss_dssp HHHHHHHEEEEEEEEEECCCTTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcEEEEecCCcHHHHHHHHHHH
Confidence 999999999999999987653 344444444
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=7.3e-09 Score=90.83 Aligned_cols=92 Identities=29% Similarity=0.392 Sum_probs=73.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++...... ...|||+|+|.|.++..+++. +.+|+++|+++..++..++........++++++.+|+
T Consensus 8 ~i~~kIv~~~~~~~--~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~---- 79 (278)
T d1zq9a1 8 LIINSIIDKAALRP--TDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV---- 79 (278)
T ss_dssp HHHHHHHHHTCCCT--TCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT----
T ss_pred HHHHHHHHHhCCCC--CCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH----
Confidence 45667777765443 379999999999999999998 5799999999999999998887666556799999999
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
+.. ....++.||+|.||.-+
T Consensus 80 -l~~-----~~~~~~~vV~NLPY~Is 99 (278)
T d1zq9a1 80 -LKT-----DLPFFDTCVANLPYQIS 99 (278)
T ss_dssp -TTS-----CCCCCSEEEEECCGGGH
T ss_pred -hhh-----hhhhhhhhhcchHHHHH
Confidence 433 12346789999999643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.73 E-value=7e-08 Score=83.07 Aligned_cols=130 Identities=15% Similarity=0.244 Sum_probs=91.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|+|||+|..++.+++++|+.+++..|.. ..+ ...+..+|++++.+|+ ++.. ..+|++
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi-------~~~~~~~rv~~~~gD~-----f~~~------p~aD~~ 142 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVV-------ENLSGSNNLTYVGGDM-----FTSI------PNADAV 142 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHH-------TTCCCBTTEEEEECCT-----TTCC------CCCSEE
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHH-------HhCcccCceEEEecCc-----ccCC------CCCcEE
Confidence 68999999999999999999999999999994 333 2345567899999999 6543 247988
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC---cEEEE-EE--c--------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN---GSIFL-ET--N-------------- 280 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g---G~l~~-e~--~-------------- 280 (322)
+..- -++.++++. ..++++++.+.|+|| |.+++ |. .
T Consensus 143 ~l~~------vLHdw~d~~------------------~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~ 198 (244)
T d1fp2a2 143 LLKY------ILHNWTDKD------------------CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLL 198 (244)
T ss_dssp EEES------CGGGSCHHH------------------HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHH
T ss_pred EEEe------ecccCChHH------------------HHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHH
Confidence 8732 222233332 458999999999998 54433 32 0
Q ss_pred -----------CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEE
Q psy7093 281 -----------HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 281 -----------~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~ 318 (322)
.+..++.++++++.| |+.+++++ ..|..-+|.+
T Consensus 199 ~dl~m~~~~G~ert~~e~~~ll~~AG----f~~~~i~~-~~~~~svIE~ 242 (244)
T d1fp2a2 199 MDVNMACLNGKERNEEEWKKLFIEAG----FQHYKISP-LTGFLSLIEI 242 (244)
T ss_dssp HHHHGGGGTCCCEEHHHHHHHHHHTT----CCEEEEEE-EETTEEEEEE
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHcC----CceEEEEE-CCCCeEEEEE
Confidence 112566777888876 78888764 4455555544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.72 E-value=1e-09 Score=94.86 Aligned_cols=91 Identities=22% Similarity=0.391 Sum_probs=69.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++.+.... ..+|||+|||+|.++..+++. +.+|+++|+++.+++.++++.. ...+++++++|+
T Consensus 17 ii~kIv~~~~~~~--~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~----- 84 (245)
T d1yuba_ 17 VLNQIIKQLNLKE--TDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDI----- 84 (245)
T ss_dssp THHHHHHHCCCCS--SEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCC-----
T ss_pred HHHHHHHhcCCCC--CCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhh---hccchhhhhhhh-----
Confidence 3456666665443 378999999999999999998 6799999999988877765432 234699999999
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
++. .++...++.||+|.||.-+.
T Consensus 85 l~~---~~~~~~~~~vv~NLPY~Ist 107 (245)
T d1yuba_ 85 LQF---QFPNKQRYKIVGNIPYHLST 107 (245)
T ss_dssp TTT---TCCCSSEEEEEEECCSSSCH
T ss_pred hcc---ccccceeeeEeeeeehhhhH
Confidence 432 13456788999999998655
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.70 E-value=2.4e-08 Score=82.16 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=101.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++.+.... +..++|.++|.|..+..++.. +.+|+|+|.++.+++.|++. ..+++.+++++.
T Consensus 6 ll~Evl~~l~~~~--g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f----- 71 (182)
T d1wg8a2 6 LYQEALDLLAVRP--GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNF----- 71 (182)
T ss_dssp THHHHHHHHTCCT--TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCG-----
T ss_pred HHHHHHHhcCCCC--CCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHH-----
Confidence 4566677776543 489999999999999999987 57999999999999888752 235799999886
Q ss_pred ccccCc---CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 205 VKNLQP---DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 205 ~~~l~~---~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
..+.. ....+++|.|+.|..+.+.. |+--+.|+++....+..+.+.|++||.+++..-+
T Consensus 72 -~~~~~~l~~~~~~~vdgIl~DLGvSs~q-----------------ld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 72 -RHLKRHLAALGVERVDGILADLGVSSFH-----------------LDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp -GGHHHHHHHTTCSCEEEEEEECSCCHHH-----------------HHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred -HHHHHHHHHcCCCccCEEEEEccCCHHH-----------------hhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 22211 12346899999987664321 1222467888999999999999999998875533
Q ss_pred CC-HHHHHHHHHHcC
Q psy7093 282 DH-LDKIKEWLGICG 295 (322)
Q Consensus 282 ~~-~~~~~~~l~~~~ 295 (322)
.. ...+++.+++.+
T Consensus 134 s~Ed~ivk~~~~e~~ 148 (182)
T d1wg8a2 134 SLEDRVVKRFLRESG 148 (182)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHHhhcc
Confidence 32 345777777764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.62 E-value=2.5e-07 Score=79.37 Aligned_cols=121 Identities=13% Similarity=0.184 Sum_probs=83.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|+|||+|..++.+++++|+.+++..|+.+. + ......+++++..+|+ ++.++ . .|++
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~-----~~~~P----~--ad~~ 143 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDM-----FVSIP----K--ADAV 143 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEECCT-----TTCCC----C--CSCE
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecccc-----cccCC----C--cceE
Confidence 6899999999999999999999999999999653 2 2233456899999999 66543 2 2333
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-E--c---C-------------
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-T--N---H------------- 281 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~--~---~------------- 281 (322)
+. ..-++..+.+ -...+++++.+.|+|||.+++. . . .
T Consensus 144 ~l------~~vlh~~~d~------------------~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~ 199 (243)
T d1kyza2 144 FM------KWICHDWSDE------------------HCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDV 199 (243)
T ss_dssp EC------SSSSTTSCHH------------------HHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHH
T ss_pred EE------EEEeecCCHH------------------HHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHH
Confidence 32 1122222222 2468999999999999976652 1 0 0
Q ss_pred -----------CCHHHHHHHHHHcCCCCceeeEEEecC
Q psy7093 282 -----------DHLDKIKEWLGICGHHMKLKLVENYKD 308 (322)
Q Consensus 282 -----------~~~~~~~~~l~~~~~~~~~~~v~~~~D 308 (322)
+..++.++++++.| |+.++++.-
T Consensus 200 ~ml~~~~~g~ert~~e~~~ll~~AG----f~~vkv~~~ 233 (243)
T d1kyza2 200 IMLAHNPGGKERTQKEFEDLAKGAG----FQGFKVHCN 233 (243)
T ss_dssp HHHHHCSSCCCEEHHHHHHHHHHHC----CSCEEEEEE
T ss_pred HHHhhCCCCCcCCHHHHHHHHHHcC----CCcEEEEEe
Confidence 11456777888876 777877643
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.60 E-value=9.5e-08 Score=79.25 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=68.0
Q ss_pred CCeEEEEcCchhHH----HHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHH--------------Hc----CC-----
Q psy7093 140 PTRMIEIGSGTGAI----TISLLKHF----PKLKAIAIDQSKHACDLTEQNAV--------------MH----NV----- 188 (322)
Q Consensus 140 ~~~iLDlg~GsG~~----~~~la~~~----~~~~v~~vDis~~al~~A~~n~~--------------~~----~l----- 188 (322)
+.+|+++|||||.= ++.+.... ...+|+|+|+|+.+++.|+.... ++ +.
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~ 104 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 104 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence 47999999999963 43333321 23589999999999999985421 00 00
Q ss_pred -------CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 189 -------ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 189 -------~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
...+.+...+. ....+ ...++||+|+|--- +..++++. .+++
T Consensus 105 ~~~~~~~~~~v~~~~~~~-----~~~~~--~~~~~fDvI~CRNV------LiYf~~~~------------------~~~v 153 (193)
T d1af7a2 105 VRVRQELANYVEFSSVNL-----LEKQY--NVPGPFDAIFCRNV------MIYFDKTT------------------QEDI 153 (193)
T ss_dssp EEECHHHHTTEEEEECCT-----TCSSC--CCCCCEEEEEECSS------GGGSCHHH------------------HHHH
T ss_pred eehHHHHHHHHHHhhhhc-----ccccc--CCCCCccEEEeehh------HHhcCHHH------------------HHHH
Confidence 01234444444 22111 13578999999322 22223332 4689
Q ss_pred HHHHhccCccCcEEEEE
Q psy7093 262 CVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e 278 (322)
++...+.|+|||+|++-
T Consensus 154 l~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 154 LRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp HHHHGGGEEEEEEEEEC
T ss_pred HHHHHHHhCCCcEEEEe
Confidence 99999999999998863
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=2.8e-07 Score=75.41 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=92.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
..+||||||+.|.++..+++.. +...++++|+.+- ... +.+.++++|+.+.............+++|
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhccCccee
Confidence 3789999999999999888764 3478999998751 123 34889999984332111111122456899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGHH 297 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~~ 297 (322)
+|+|+-....+... ..++. .-+++....+..+.++|++||.+++-+= ......+...++..
T Consensus 91 lVlSD~ap~~sg~~------~~d~~---------~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~--- 152 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTP------AVDIP---------RAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL--- 152 (180)
T ss_dssp EEEECCCCCCCSCH------HHHHH---------HHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH---
T ss_pred EEEecccchhcccc------hhHHH---------HHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhh---
Confidence 99998543222221 11111 1234567888899999999999998653 23345566666665
Q ss_pred CceeeEEEecCCCCC
Q psy7093 298 MKLKLVENYKDFNNK 312 (322)
Q Consensus 298 ~~~~~v~~~~D~~g~ 312 (322)
|..|.+.|-.+.+
T Consensus 153 --F~~V~~~KP~aSR 165 (180)
T d1ej0a_ 153 --FTKVKVRKPDSSR 165 (180)
T ss_dssp --EEEEEEECCTTSC
T ss_pred --cCEEEEECCCCcc
Confidence 8899988876543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=6.6e-08 Score=83.50 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +..|||+|||+|.++..+++. ..+|+++|+++..++..++.. ...++++++++|+
T Consensus 7 ~~~~~~Iv~~~~~~~--~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~---~~~~~~~ii~~D~--- 76 (252)
T d1qyra_ 7 QFVIDSIVSAINPQK--GQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHP---FLGPKLTIYQQDA--- 76 (252)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCT---TTGGGEEEECSCG---
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHh---hhccchhHHhhhh---
Confidence 345677777776543 378999999999999999987 578999999999998887532 2235699999999
Q ss_pred ccccccCcCcC--CCCeeEEEEcCCCCCCC
Q psy7093 203 GQVKNLQPDLL--EQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 203 ~~~~~l~~~~~--~~~fDlIv~NPPy~~~~ 230 (322)
++.-...+. .+.--.|++|.||.-+.
T Consensus 77 --l~~~~~~~~~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 77 --MTFNFGELAEKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp --GGCCHHHHHHHHTSCEEEEEECCTTTHH
T ss_pred --hhhcccccccccCCCeEEEecchHHHHH
Confidence 432110000 12334889999997644
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.44 E-value=2.6e-07 Score=79.18 Aligned_cols=82 Identities=13% Similarity=0.228 Sum_probs=66.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------CCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV--------ANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l--------~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||..+|.|..+..+|.. +.+|+++|.++......+.++.+... ..+++++++|. .+.+..
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds-----~~~L~~-- 160 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-----LTALTD-- 160 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH-----HHHSTT--
T ss_pred CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH-----HHHHhc--
Confidence 58999999999999999998 68999999999998888888765432 23799999998 665543
Q ss_pred CCCCeeEEEEcCCCCCCCC
Q psy7093 213 LEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~ 231 (322)
....||+|+.+|+|.....
T Consensus 161 ~~~~~DvIYlDPMFp~~~K 179 (250)
T d2oyra1 161 ITPRPQVVYLDPMFPHKQK 179 (250)
T ss_dssp CSSCCSEEEECCCCCCCCC
T ss_pred cCCCCCEEEECCCCccccc
Confidence 2457999999999965543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.13 E-value=3.4e-06 Score=71.55 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
|..-.+...++..++ |++|||+|++.|.-++.++..+ +..+++++|+++.....+. ...++++++
T Consensus 66 p~d~~~~~eli~~~K-----Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i 134 (232)
T d2bm8a1 66 PDTQAVYHDMLWELR-----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLH 134 (232)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEE
T ss_pred HHHHHHHHHHHHHhC-----CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeee
Confidence 344444555655554 3789999999998877766432 5689999999875332211 113579999
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
++|..+...++.+ ....+|+|+.+
T Consensus 135 ~gDs~~~~~~~~l----~~~~~dlIfID 158 (232)
T d2bm8a1 135 QGDCSDLTTFEHL----REMAHPLIFID 158 (232)
T ss_dssp ECCSSCSGGGGGG----SSSCSSEEEEE
T ss_pred ecccccHHHHHHH----HhcCCCEEEEc
Confidence 9998443332222 34467888774
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.60 E-value=6.8e-05 Score=63.39 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=52.5
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
|.+-...+++.+++..... +..|||.++|||..+.++.+. +.+.+|+|++++.++.|++++.
T Consensus 194 p~~kP~~L~~~lI~~~s~~---gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 194 ITPKPRDLIERIIRASSNP---NDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp -CCCCHHHHHHHHHHHCCT---TCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhCCC---CCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 4555678899998888643 379999999999999988777 7899999999999999998864
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=0.00014 Score=64.25 Aligned_cols=73 Identities=11% Similarity=0.223 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhccC----CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 123 EELIDIITDKLESS----NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 123 e~lv~~i~~~~~~~----~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
+.+++.+++.+.-. ...+..|||+|+|.|.++..+.......+|+++|+++...+..++... .++++++++|
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D 98 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRD 98 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSC
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCc
Confidence 34556666654321 113468999999999999999987434689999999999888775432 3569999999
Q ss_pred C
Q psy7093 199 I 199 (322)
Q Consensus 199 ~ 199 (322)
+
T Consensus 99 ~ 99 (322)
T d1i4wa_ 99 P 99 (322)
T ss_dssp T
T ss_pred h
Confidence 8
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.45 E-value=7.2e-05 Score=65.25 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=53.9
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
.|.+-.+.|++.+++..... +..|||.+||||..+.++... +.+.+|+|+++++++.|++++..
T Consensus 231 hpt~kP~~L~~rlI~~~s~~---gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 231 HPARFPAKLPEFFIRMLTEP---DDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CSSCCCTHHHHHHHHHHCCT---TCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred CCCcCchHHHHHhhhhcccC---CCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHh
Confidence 45666678999998877553 489999999999999988887 78999999999999999877543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.44 E-value=9.9e-05 Score=62.27 Aligned_cols=109 Identities=9% Similarity=0.072 Sum_probs=63.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
..+|+|||||.|..+..++...+...|.|+++--+.-+. -.....++ .+-+++...+- +.. +..++.|+
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~-~ni~~~~~~~d-----v~~----l~~~~~D~ 135 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYG-WNLVRLQSGVD-----VFF----IPPERCDT 135 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTT-GGGEEEECSCC-----TTT----SCCCCCSE
T ss_pred CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccccc-cccccchhhhh-----HHh----cCCCcCCE
Confidence 368999999999999999988666788888884221000 00000001 11234333332 222 24578999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+|+-- + ..-.+++-. .. ..++++.+.++|+|||.+++-+
T Consensus 136 vlcDm~--e----ss~~~~vd~-------------~R-tl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 136 LLCDIG--E----SSPNPTVEA-------------GR-TLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp EEECCC--C----CCSSHHHHH-------------HH-HHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEeeCC--C----CCCCchhhh-------------hh-HHHHHHHHHHHcccCCEEEEEE
Confidence 999741 1 111222211 00 1267888899999999988765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.42 E-value=0.00016 Score=61.83 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=55.5
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
-|.+-...|++.+++..... +..|||.++|||..++++... +.+.+|+|+++..++.|++++...
T Consensus 188 Hp~~kP~~L~~~~I~~~s~~---gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 188 HPTQKPAAVIERLVRALSHP---GSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CTTCCCHHHHHHHHHHHSCT---TCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred CccccchhHHHHHHHhhcCC---CCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 35556678999998887543 379999999999999998888 789999999999999999998764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.31 E-value=0.00012 Score=61.83 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=61.9
Q ss_pred EEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC
Q psy7093 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN 272 (322)
Q Consensus 193 ~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g 272 (322)
+++++|. ++.+.. ++++++|+|+.+|||....+... ..+. .++=++++...+.++.++|+||
T Consensus 6 ~i~~gDc-----le~l~~-lpd~sVdliitdPPY~~~~~~~d------~~~~------~~~y~~~~~~~~~e~~rvLk~~ 67 (256)
T d1g60a_ 6 KIHQMNC-----FDFLDQ-VENKSVQLAVIDPPYNLSKADWD------SFDS------HNEFLAFTYRWIDKVLDKLDKD 67 (256)
T ss_dssp SEEECCH-----HHHHHH-SCTTCEEEEEECCCCSSCSSGGG------CCSS------HHHHHHHHHHHHHHHHHHEEEE
T ss_pred EEEeccH-----HHHHhh-CcCCCcCEEEECCCCCCCcCcCc------CCCC------HHHHHHHHHHHHHHhhhccccC
Confidence 4688988 665542 46789999999999965432100 0000 0011345677889999999999
Q ss_pred cEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 273 GSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 273 G~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
|.+++-........+...+...++ .+...-+|.
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~~g~--~~~~~iiW~ 100 (256)
T d1g60a_ 68 GSLYIFNTPFNCAFICQYLVSKGM--IFQNWITWD 100 (256)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTC--EEEEEEEEC
T ss_pred cccccccCchhhhhhhhhhhcccc--eeeeeeEee
Confidence 999876666666667777777775 344444553
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.001 Score=56.60 Aligned_cols=134 Identities=7% Similarity=0.010 Sum_probs=82.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|=-|+++| ++.++|+.+ .+++|+.++.+++.++.+.+.++..+...++.++++|+.++...+.+.... ..++
T Consensus 11 Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~ 89 (257)
T d1xg5a_ 11 RLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG 89 (257)
T ss_dssp CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 67777776655 444444433 378999999999999988888887776667899999996655433321110 1367
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.|++|.|..+.....+..++.+..+.--...+.+ -+-+.+.+++.....-..+|.++..
T Consensus 90 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~---~~~~~~~~~~~~~~~~~~~g~Ii~i 148 (257)
T d1xg5a_ 90 VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLA---LSICTREAYQSMKERNVDDGHIINI 148 (257)
T ss_dssp CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHH---HHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred CCEEEecccccCCCccccccHHHHHhhhhhhhhH---HHHHHHHHHHHHHHhccCCCceEEE
Confidence 9999999988777777666665433211111110 0122334444444444456887764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.75 E-value=0.0012 Score=52.74 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=64.0
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|+=+|||. |..++.+++.+...+|+++|.++..++.|++ +|.. .++...- +...+.+.+......+|
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~--~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT---DILNYKN--GHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS---EEECGGG--SCHHHHHHHHTTTSCEE
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc---ccccccc--hhHHHHHHHHhhccCcc
Confidence 46788899986 8889999998766689999999998888863 4532 2221111 00011111111234599
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+|+-.-+- ...++++.++++|+|.+++ +|
T Consensus 99 ~vid~~g~--------------------------------~~~~~~a~~~~~~~G~iv~-~G 127 (174)
T d1jqba2 99 RVIMAGGG--------------------------------SETLSQAVKMVKPGGIISN-IN 127 (174)
T ss_dssp EEEECSSC--------------------------------TTHHHHHHHHEEEEEEEEE-CC
T ss_pred eEEEccCC--------------------------------HHHHHHHHHHHhcCCEEEE-Ee
Confidence 99874221 1356778899999999887 54
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.66 E-value=0.00088 Score=57.97 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=50.7
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
=+++++|. ++.+.. ++++++|+|+.+|||....+...-... .++=++.+...+.++.++|+|
T Consensus 13 ~~l~~GD~-----le~l~~-l~~~sVdli~tDPPY~~~~~~~~~~~~------------~~~y~~~~~~~l~~~~rvLk~ 74 (320)
T d1booa_ 13 GSMYIGDS-----LELLES-FPEESISLVMTSPPFALQRKKEYGNLE------------QHEYVDWFLSFAKVVNKKLKP 74 (320)
T ss_dssp EEEEESCH-----HHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCH------------HHHHHHHHHHHHHHHHHHEEE
T ss_pred CEEEehhH-----HHHHhh-CccCCCCEEEECCCCcCCCCCCCCCCC------------HHHHHHHHHHHHHHHHHhCcc
Confidence 47899998 666543 567899999999999865443211000 001134567889999999999
Q ss_pred CcEEEEEEcC
Q psy7093 272 NGSIFLETNH 281 (322)
Q Consensus 272 gG~l~~e~~~ 281 (322)
+|.+++.++.
T Consensus 75 ~G~i~i~~~~ 84 (320)
T d1booa_ 75 DGSFVVDFGG 84 (320)
T ss_dssp EEEEEEEECC
T ss_pred cCcccccccc
Confidence 9999987654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.53 E-value=0.001 Score=56.53 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=57.0
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
-.++.+|. ++.+.. ++++++|+|+.+|||..... .+ +...+-++.....+.++.++|||
T Consensus 5 ~~~~~~D~-----le~l~~-l~d~SIDliitDPPYn~~~~---------~~------~~~~~y~~~~~~~~~e~~rvLk~ 63 (279)
T d1eg2a_ 5 HVYDVCDC-----LDTLAK-LPDDSVQLIICDPPYNIMLA---------DW------DDHMDYIGWAKRWLAEAERVLSP 63 (279)
T ss_dssp EEEEECCH-----HHHHHT-SCTTCEEEEEECCCSBCCGG---------GG------GTCSSHHHHHHHHHHHHHHHEEE
T ss_pred ceEEechH-----HHHHhh-CcCCCccEEEECCCCCCCcc---------cc------cCHHHHHHHHHHHHHHHHHHhCC
Confidence 35677888 666543 56789999999999964321 01 12223456678899999999999
Q ss_pred CcEEEEEEcCCC---------HHHHHHHHHHcCC
Q psy7093 272 NGSIFLETNHDH---------LDKIKEWLGICGH 296 (322)
Q Consensus 272 gG~l~~e~~~~~---------~~~~~~~l~~~~~ 296 (322)
+|.+++-++... ...+..++...++
T Consensus 64 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (279)
T d1eg2a_ 64 TGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKM 97 (279)
T ss_dssp EEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCC
T ss_pred CccEEEecCccccccccccchhhHHHHHHhccCc
Confidence 999998665421 3445556666664
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0014 Score=57.29 Aligned_cols=133 Identities=22% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~-~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|+|++||.|.++..+-..--.. -+.++|+++.+.+.-+.|.. ...++.+|+ .+.....++...+|
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di-----~~~~~~~~~~~~~D 70 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTI-----EGITLEEFDRLSFD 70 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCG-----GGCCHHHHHHHCCS
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC------CCCcccCch-----hhCCHhHcCCCCcc
Confidence 4789999999999988876651122 36799999999998887742 245566777 21111112234689
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhcc-CccCcEEEEEE-c----CCCHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY-LKPNGSIFLET-N----HDHLDKIKEWLG 292 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~-Lk~gG~l~~e~-~----~~~~~~~~~~l~ 292 (322)
+++.-||.-..+..... .....+.. ..+..+++.+..+ -+|. ++++|= . ....+.+.+.|+
T Consensus 71 ll~ggpPCq~fS~ag~~---~~~~d~r~---------~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~ 137 (343)
T d1g55a_ 71 MILMSPPCQPFTRIGRQ---GDMTDSRT---------NSFLHILDILPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIE 137 (343)
T ss_dssp EEEECCC------------------------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHH
T ss_pred EEEeecccccccccccc---cccccccc---------cccchhhhhHhhhcCCCc-eeeeeccCCcccchhhHHHHhhhh
Confidence 99999997654432110 00011111 1233444444332 1576 567773 2 223566777777
Q ss_pred HcCC
Q psy7093 293 ICGH 296 (322)
Q Consensus 293 ~~~~ 296 (322)
+.|+
T Consensus 138 ~~GY 141 (343)
T d1g55a_ 138 NCGF 141 (343)
T ss_dssp HTTE
T ss_pred cccc
Confidence 7764
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.21 E-value=0.0075 Score=51.91 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=53.6
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLK-AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~-v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
+|+|++||.|.+...+-.. +.+ +.++|+++.+.+.-+.|. + -.++.+|+. + +.. ..-...|++
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~-----~-~~~-~~~~~~dll 65 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDIS-----K-ISS-DEFPKCDGI 65 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTT-----T-SCG-GGSCCCSEE
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChh-----h-CCH-hHcccccEE
Confidence 6999999999999888776 444 559999999998888774 2 245778882 2 211 112468999
Q ss_pred EEcCCCCCCC
Q psy7093 221 VSNPPYVPSL 230 (322)
Q Consensus 221 v~NPPy~~~~ 230 (322)
+.-||.-+.+
T Consensus 66 ~~g~PCq~fS 75 (324)
T d1dcta_ 66 IGGPPCQSWS 75 (324)
T ss_dssp EECCCCTTTS
T ss_pred eecccccccc
Confidence 9999976544
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.10 E-value=0.0092 Score=50.11 Aligned_cols=96 Identities=11% Similarity=0.204 Sum_probs=66.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.+|=-|. ++.++.++++.+ .+++|+.+|.+++.++.+.+.++..+ .++.++..|+.++...+.+... -..++
T Consensus 11 KvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 11 KVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp CEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 55665564 455766666654 36899999999999988888777655 3588999999665543332110 12468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.|++|.|...........+..+.
T Consensus 88 iDilvnnag~~~~~~~~~~~~~~ 110 (251)
T d2c07a1 88 VDILVNNAGITRDNLFLRMKNDE 110 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHH
T ss_pred ceeeeeccccccccccccccHHH
Confidence 99999999877776666655543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.02 E-value=0.0026 Score=51.63 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=36.9
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-+|||. |..++.+++.....+|+++|.++..++.|++
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence 347999999997 7788888888888899999999999988874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.0048 Score=48.71 Aligned_cols=98 Identities=11% Similarity=0.221 Sum_probs=63.2
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
++.+||-.|+ |.|..++.+|+.. +++|++++.+++..+.++ .+|... ++ |..+++..+.+........
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~----~~Ga~~---vi--~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVL----QNGAHE---VF--NHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH----HTTCSE---EE--ETTSTTHHHHHHHHHCTTC
T ss_pred CCCEEEEEecccccccccccccccc-Cccccccccccccccccc----ccCccc---cc--ccccccHHHHhhhhhccCC
Confidence 3478999985 6788899999886 578999999988777765 356432 22 2211110121111123457
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+|+|+.+. | ...++.+.++|+|+|.++. +|
T Consensus 98 ~d~v~d~~-----------------------------g----~~~~~~~~~~l~~~G~iv~-~G 127 (174)
T d1yb5a2 98 IDIIIEML-----------------------------A----NVNLSKDLSLLSHGGRVIV-VG 127 (174)
T ss_dssp EEEEEESC-----------------------------H----HHHHHHHHHHEEEEEEEEE-CC
T ss_pred ceEEeecc-----------------------------c----HHHHHHHHhccCCCCEEEE-Ee
Confidence 99998742 0 1456778899999999886 44
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.96 E-value=0.0088 Score=47.47 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=36.0
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||-+|+| .|.+++.+|+.++..+|+++|.++..++.|++
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence 34789999988 48888999998765689999999999988864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.93 E-value=0.008 Score=52.14 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=54.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLK-AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~-v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
.+.+|+|++||.|.++..+-.. +.+ +.++|+++.|++.-+.|... . .++|+ . .+.. .....+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~~-----~---~~~Di-----~-~~~~-~~~~~~ 72 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGE-----K---PEGDI-----T-QVNE-KTIPDH 72 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSC-----C---CBSCG-----G-GSCG-GGSCCC
T ss_pred CCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCCC-----C---CcCch-----h-cCch-hhccee
Confidence 3479999999999999988766 444 56799999999999988631 1 24776 2 2211 122468
Q ss_pred eEEEEcCCCCCCCC
Q psy7093 218 DLVVSNPPYVPSLD 231 (322)
Q Consensus 218 DlIv~NPPy~~~~~ 231 (322)
|+++.-||.-+.+.
T Consensus 73 Dll~ggpPCq~fS~ 86 (327)
T d2c7pa1 73 DILCAGFPCQAFSI 86 (327)
T ss_dssp SEEEEECCCTTTCT
T ss_pred eeeecccccchhhh
Confidence 99999999766543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.02 Score=44.65 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+|+-+|+| .|.+++.+++.+ +++|+++|.+++.++.|++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK 69 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred CCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc
Confidence 34789999998 778888888875 6799999999998888764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.017 Score=48.97 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=80.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
++|.=+-.|++.|+.++|+.+ .+.+|+.++.+++.++.+.+.++..+. ++.++..|+.+....+.+.... ..+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 677667667777777776643 468999999999999998888877663 4889999996544332221111 236
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+.|++|.|--............+. ++..... .+.-...+.+.+..+|+++|.++.
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~--~~~~~~v-----N~~g~~~l~~~~lp~m~~~g~ivn 135 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQ--AEVTMKT-----NFFGTRDVCTELLPLIKPQGRVVN 135 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHH--HHHHHHH-----HTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CcEEEEEcCCcCCCCCcccCCHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHhcCCccc
Confidence 899999998765443333222211 1111100 011133567778888899998765
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.38 E-value=0.041 Score=42.70 Aligned_cols=100 Identities=11% Similarity=0.260 Sum_probs=62.6
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc-cc-ccccCcCcCCCC
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK-GQ-VKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-~~-~~~l~~~~~~~~ 216 (322)
+.+|+=+||| .|.+++.+++.. +++|+++|.++..++.|++ ++.. ..+...+..+. .. .+.+. ......
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~----~ga~--~~~~~~~~~~~~~~~~~~~~-~~~g~g 98 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----CGAD--VTLVVDPAKEEESSIIERIR-SAIGDL 98 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTCS--EEEECCTTTSCHHHHHHHHH-HHSSSC
T ss_pred CCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH----cCCc--EEEeccccccccchhhhhhh-cccccC
Confidence 4788889988 677888888876 5799999999999888874 3432 22222211000 00 00010 012356
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+|+|+-... -...++.+.++++++|.+++ +|
T Consensus 99 ~D~vid~~g--------------------------------~~~~~~~a~~~~~~~G~iv~-~G 129 (170)
T d1e3ja2 99 PNVTIDCSG--------------------------------NEKCITIGINITRTGGTLML-VG 129 (170)
T ss_dssp CSEEEECSC--------------------------------CHHHHHHHHHHSCTTCEEEE-CS
T ss_pred CceeeecCC--------------------------------ChHHHHHHHHHHhcCCceEE-Ee
Confidence 898886321 01467788899999999886 54
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.35 E-value=0.013 Score=46.05 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=63.2
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|+=+||| .|..++.+++.++...|+.+|.++.-++.|++ +|.. .++..+- +...+.+. .+.++.+
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~---~~i~~~~--~~~~~~i~-~~t~gg~ 97 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT---HVINSKT--QDPVAAIK-EITDGGV 97 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS---EEEETTT--SCHHHHHH-HHTTSCE
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe---EEEeCCC--cCHHHHHH-HHcCCCC
Confidence 34788889987 45667778887777789999999998888874 3532 2333221 10012111 1234579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+|+-.-. -...++.+.++++|+|.+++
T Consensus 98 D~vid~~G--------------------------------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 98 NFALESTG--------------------------------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp EEEEECSC--------------------------------CHHHHHHHHHTEEEEEEEEE
T ss_pred cEEEEcCC--------------------------------cHHHHHHHHhcccCceEEEE
Confidence 99986321 02567788999999999876
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.28 E-value=0.032 Score=46.86 Aligned_cols=97 Identities=9% Similarity=0.107 Sum_probs=63.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC---cCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD---LLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~---~~~ 214 (322)
++++|=-|.++ .++.++++.+ .+++|+.+|.+++.++.+.+.+...+ .++.++.+|+.++...+.+... ...
T Consensus 8 GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 8 GCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 36677666554 4444444432 27899999999999988887777665 3588899999665543332111 013
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
++.|++|.|..+........+..+.
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~ 109 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVED 109 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred CCceEEEECCceeccCccccCCHHH
Confidence 4799999998877666655555443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.27 E-value=0.017 Score=48.55 Aligned_cols=95 Identities=14% Similarity=0.162 Sum_probs=61.0
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=-|.++| .++..+++. +++|+.+|.+++.++.+.+.+...+ .++..+.+|+.++...+.+... -..+
T Consensus 6 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 66776665544 334444444 7899999999999998888777655 3588899999665433322110 0136
Q ss_pred CeeEEEEcCCCCC-CCCCCCCChhh
Q psy7093 216 KFDLVVSNPPYVP-SLDIPKLEPEI 239 (322)
Q Consensus 216 ~fDlIv~NPPy~~-~~~~~~l~~~v 239 (322)
+.|++|.|..+.. ...+..++.+.
T Consensus 82 ~iDilVnnaG~~~~~~~~~~~~~~~ 106 (260)
T d1zema1 82 KIDFLFNNAGYQGAFAPVQDYPSDD 106 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHH
T ss_pred CCCeehhhhccccccCccccccHHH
Confidence 7999999976543 23444444443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.22 E-value=0.02 Score=47.95 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=61.3
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNA-VMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~-~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++|=-|+++| .++..+++. +++|+.+|.+++.++.+.+.+ +..+ .++.++.+|+.++...+.+.... ..
T Consensus 6 K~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 66777776555 344444444 789999999998887766655 3444 34888999996655433321110 13
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
++.|++|.|.-+.....+..++.+.
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~ 106 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDE 106 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHH
Confidence 5799999998766665555555543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.16 E-value=0.0091 Score=47.28 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=65.5
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|+=+|||. |.+++.+++......|+.+|.++..++.|++ +|.. .++...-.++ ...........+.+
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---~~i~~~~~~~-~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDK-PVQDVITELTAGGV 99 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSS-CHHHHHHHHHTSCB
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---cccCCccchh-hhhhhHhhhhcCCC
Confidence 347889999997 8999999999877799999999988877764 4543 2222111000 01111111124578
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC-cEEEEEEc
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN-GSIFLETN 280 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g-G~l~~e~~ 280 (322)
|+++-.-. ....++++.+.+++| |.+++ +|
T Consensus 100 d~vie~~G--------------------------------~~~~~~~a~~~~~~g~G~~v~-vG 130 (174)
T d1e3ia2 100 DYSLDCAG--------------------------------TAQTLKAAVDCTVLGWGSCTV-VG 130 (174)
T ss_dssp SEEEESSC--------------------------------CHHHHHHHHHTBCTTTCEEEE-CC
T ss_pred cEEEEecc--------------------------------cchHHHHHHHHhhcCCeEEEe-cC
Confidence 99886311 125788899999996 88877 54
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.15 E-value=0.035 Score=46.33 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=62.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=-| |++.++.++++.+ .+++|+.+|.+++.++.+.+.+. ..+++.++.+|+.++...+.+... -..++
T Consensus 7 K~alVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 7 KVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5555555 5555555555443 37899999999998887776553 345699999999665543332111 01368
Q ss_pred eeEEEEcCCCCCCCCCCCCChhh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.|++|.|..+.....+..++.+.
T Consensus 83 iDiLVnnAg~~~~~~~~~~~~~~ 105 (251)
T d1zk4a1 83 VSTLVNNAGIAVNKSVEETTTAE 105 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHH
T ss_pred ceEEEeccccccccchhcccccc
Confidence 99999998877776666666554
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.07 E-value=0.019 Score=44.74 Aligned_cols=98 Identities=13% Similarity=0.246 Sum_probs=62.6
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
++.+|+=+|+ |.|.+++.+++..+..+|+++|.++..++.+++ +|.. .++..+- ++..+........+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~--~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD---YVINASM--QDPLAEIRRITESKG 97 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS---EEEETTT--SCHHHHHHHHTTTSC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc---eeeccCC--cCHHHHHHHHhhccc
Confidence 3478999996 366777778887777899999999998888875 3532 2222222 000111111112456
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
||+|+-.-+ -...++.+.+.++|||.+++
T Consensus 98 ~d~vid~~g--------------------------------~~~~~~~a~~~l~~~G~iv~ 126 (170)
T d1jvba2 98 VDAVIDLNN--------------------------------SEKTLSVYPKALAKQGKYVM 126 (170)
T ss_dssp EEEEEESCC--------------------------------CHHHHTTGGGGEEEEEEEEE
T ss_pred chhhhcccc--------------------------------cchHHHhhhhhcccCCEEEE
Confidence 999887311 01466778899999999876
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.05 E-value=0.059 Score=45.09 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc---CcCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP---DLLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~---~~~~ 214 (322)
++++|=.|+.+| ++.++++.+ .+++|+.++.+++.++.+.+.+...+. .+.++..|+.++...+.+.. ....
T Consensus 6 gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 6 GTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 367777776544 444444332 378999999999998888887777663 48888999966554333211 1123
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
+..|+++.|........+..++.+.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~ 107 (258)
T d1ae1a_ 83 GKLNILVNNAGVVIHKEAKDFTEKD 107 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHH
T ss_pred CCcEEEeccccccccCccccCCHHH
Confidence 5789999998887777766666544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.1 Score=40.35 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=62.4
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc-ccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ-VKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~-~~~l~~~~~~~~f 217 (322)
+.+|+=+|+| .|.+++.+++..+..+|+++|.++..++.|++ +|.. .++..+-.+... .+.+. ......+
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~---~~~~~~~~~~~~~~~~~~-~~~g~g~ 98 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVE-GQLGCKP 98 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHH-HHHTSCC
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCc---cccccccccccccccccc-ccCCCCc
Confidence 3788889997 45677777887766699999999999988864 4543 122221100000 00000 0123468
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+|+-.-+ -...++.+.+++++||.+++ +|
T Consensus 99 Dvvid~~G--------------------------------~~~~~~~a~~~~~~gG~iv~-~G 128 (171)
T d1pl8a2 99 EVTIECTG--------------------------------AEASIQAGIYATRSGGTLVL-VG 128 (171)
T ss_dssp SEEEECSC--------------------------------CHHHHHHHHHHSCTTCEEEE-CS
T ss_pred eEEEeccC--------------------------------CchhHHHHHHHhcCCCEEEE-Ee
Confidence 99887311 02577889999999999887 44
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.86 E-value=0.036 Score=46.71 Aligned_cols=127 Identities=14% Similarity=0.097 Sum_probs=75.5
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQS-KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis-~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
+++|=-|+++| .++..++++ +++|+.+|.+ ++.++.+.+.++..+. ++.++++|+.++.....+.... ..
T Consensus 19 K~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 56666665554 344444444 7899999976 5666666666666653 4889999996654333221100 13
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
++.|++|.|..+...........+.....-... +.-.-.+.+.+...|+.+|..++.
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~n-------l~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTIN-------TRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHH-------THHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhc-------cceeeeeccccccccccccccccc
Confidence 578999999887766655555443322111111 111345567777778888877664
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.80 E-value=0.033 Score=46.76 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=61.8
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=-|+++| .++..++++ +++|+.+|.+++.++.+...+...+...++..+.+|+.++...+.+.... ..+
T Consensus 5 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 56666666555 345555555 78999999999999888777765554556889999996655433321110 136
Q ss_pred CeeEEEEcCCCC-CCCCCCCCChh
Q psy7093 216 KFDLVVSNPPYV-PSLDIPKLEPE 238 (322)
Q Consensus 216 ~fDlIv~NPPy~-~~~~~~~l~~~ 238 (322)
+.|++|.|--.. +...+..++.+
T Consensus 83 ~iDiLVnnAG~~~~~~~~~~~~~~ 106 (258)
T d1iy8a_ 83 RIDGFFNNAGIEGKQNPTESFTAA 106 (258)
T ss_dssp CCSEEEECCCCCCCCBCGGGSCHH
T ss_pred CCCEEEECCcccccCCchhhhhhh
Confidence 799999997543 23334344433
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.80 E-value=0.023 Score=47.75 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=58.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc---CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL---LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~---~~~ 215 (322)
+++|=-|+++| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+. ++..+.+|+.++...+.+.... ..+
T Consensus 9 K~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 9 KTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp CEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 56666665544 444444432 278999999999999888877766553 5899999996554333221110 136
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
+.|++|.|...........++.+.
T Consensus 86 ~idilvnnAG~~~~~~~~~~~~~~ 109 (259)
T d1xq1a_ 86 KLDILINNLGAIRSKPTLDYTAED 109 (259)
T ss_dssp CCSEEEEECCC------CCCCHHH
T ss_pred CcccccccccccCCCchhhCCHHH
Confidence 799999998877666555555443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.77 E-value=0.03 Score=43.79 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=62.9
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+||=.|+|. |.+++.+++.+....|+++|.+++.++.+++ .+.. .++..+-. ..+..........+|
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~~---~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGAD---HVVDARRD---PVKQVMELTRGRGVN 102 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTCS---EEEETTSC---HHHHHHHHTTTCCEE
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----cccc---eeecCccc---HHHHHHHhhCCCCce
Confidence 47888899874 4556777777777899999999988888774 3432 23332210 011111111245699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+|+-.-. -...++.+.+.|++||.+++ +|
T Consensus 103 ~vid~~g--------------------------------~~~~~~~a~~~l~~~G~iv~-~G 131 (172)
T d1h2ba2 103 VAMDFVG--------------------------------SQATVDYTPYLLGRMGRLII-VG 131 (172)
T ss_dssp EEEESSC--------------------------------CHHHHHHGGGGEEEEEEEEE-CC
T ss_pred EEEEecC--------------------------------cchHHHHHHHHHhCCCEEEE-Ee
Confidence 9987421 02467889999999999886 44
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.48 E-value=0.083 Score=43.96 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=61.7
Q ss_pred EEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCCee
Q psy7093 143 MIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQKFD 218 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~fD 218 (322)
+|=-|++ +.++.++++.+ .+++|+.+|.+++.++.+.+.+...+ .++.++.+|+.++...+.+... -..++.|
T Consensus 4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3444544 44544444432 37899999999999998888887765 3588899999665543332111 0236899
Q ss_pred EEEEcCCCCCCCCCCCCChhh
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v 239 (322)
++|.|.-+.....+..++.+.
T Consensus 81 ilVnnAG~~~~~~~~~~~~~~ 101 (255)
T d1gega_ 81 VIVNNAGVAPSTPIESITPEI 101 (255)
T ss_dssp EEEECCCCCCCBCGGGCCHHH
T ss_pred EEEecccccccCcHHHhhhhh
Confidence 999998776665555555543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.43 E-value=0.047 Score=45.58 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=58.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=-| |++.++.++++.+ .+++|+.+|.+++.++.+.+.+ + .+..++++|+.++...+.+... -..++
T Consensus 7 K~alITG-as~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 7 KVALVTG-GASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp CEEEETT-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 5666555 4455555555543 3789999999998887665443 3 4577888999655433322111 01367
Q ss_pred eeEEEEcCCCCCCCCCCCCChhh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.|++|.|........+..++.+.
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~ 103 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLED 103 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHH
T ss_pred CCeEEecccccCCCCcccCCHHH
Confidence 89999998876665555555543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.043 Score=45.93 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=59.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|++.++.++++.+ .+++|+.+|.+++.++.+.+.++..+ .++.++++|+.++...+.+.... ..++
T Consensus 12 K~al-ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 12 KCAI-ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp CEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5555 5555666666666543 37899999999999988888887765 35888999996655433321100 1267
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|..+....
T Consensus 89 iDilvnnAG~~~~~ 102 (255)
T d1fmca_ 89 VDILVNNAGGGGPK 102 (255)
T ss_dssp CCEEEECCCCCCCC
T ss_pred CCEeeeCCcCCCCC
Confidence 99999998765443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.33 E-value=0.055 Score=45.67 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=57.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=-|+++| ++.++++.+ .+++|+.+|.+++.++.+.+.+...+.. .++..+.+|+.++...+.+.... ..+
T Consensus 5 K~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 83 (274)
T d1xhla_ 5 KSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFG 83 (274)
T ss_dssp CEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 56666665554 444444432 2789999999999999988888777643 46899999996655433321110 135
Q ss_pred CeeEEEEcCCC
Q psy7093 216 KFDLVVSNPPY 226 (322)
Q Consensus 216 ~fDlIv~NPPy 226 (322)
+.|++|.|.-.
T Consensus 84 ~iDilVnnAG~ 94 (274)
T d1xhla_ 84 KIDILVNNAGA 94 (274)
T ss_dssp CCCEEEECCCC
T ss_pred CceEEEeeccc
Confidence 78999999653
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.25 E-value=0.076 Score=44.25 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=62.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.+|=-| |++.++.++++.+ .+++|+.+|.+++.++.+.+.++..+. ++.++.+|+.++...+.+... -..++
T Consensus 3 KValITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 3 EVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 3445445 4455555555433 378999999999999988888877653 588999999665544332111 12368
Q ss_pred eeEEEEcCCCCCCCCCCCCChh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
.|++|.|.-......+..+..+
T Consensus 80 iDilVnnAG~~~~~~~~~~~~e 101 (257)
T d2rhca1 80 VDVLVNNAGRPGGGATAELADE 101 (257)
T ss_dssp CSEEEECCCCCCCSCGGGCCHH
T ss_pred CCEEEecccccCCCChHHcCHH
Confidence 9999999876655555555444
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.051 Score=45.10 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=58.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=-|.+ +.++.++++.+ .+++|+.+|.+++.++...+.+. .+...+..|+.++...+.+... -..++
T Consensus 5 K~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (243)
T d1q7ba_ 5 KIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEFGE 78 (243)
T ss_dssp CEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence 455555544 44555555433 37899999999988877665442 3477889999665433222110 12368
Q ss_pred eeEEEEcCCCCCCCCCCCCChhh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.|++|.|........+..+..+.
T Consensus 79 iDilVnnAg~~~~~~~~~~~~~~ 101 (243)
T d1q7ba_ 79 VDILVNNAGITRDNLLMRMKDEE 101 (243)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHH
T ss_pred cceehhhhhhccccccccccccc
Confidence 99999998776666555555443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.76 E-value=0.034 Score=46.60 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=58.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC-HHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcC--cCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS-KHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPD--LLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis-~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~ 214 (322)
+++| +-.|++.++.++|+.+ .+++|+.++.+ .+.++.+...+.. .+ .++.++.+|+.++...+.+... -..
T Consensus 5 K~al-ITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 5 KVAV-VTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CEEE-ETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5566 4444555555555433 27899999986 5666666655533 34 3588999999665544332110 012
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChh
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
++.|++|.|.-......+..++.+
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~ 105 (260)
T d1x1ta1 82 GRIDILVNNAGIQHTALIEDFPTE 105 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHH
T ss_pred CCCcEEEeecccccCCchhhhhHH
Confidence 679999999876665555555544
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=93.72 E-value=0.049 Score=45.88 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=58.3
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCeeEEEE
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDLVVS 222 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~fDlIv~ 222 (322)
+..-+||-.++..+++. +-+.+.+|+.+.-.+..++|+.. ..++.+++.|- ++.+...+ +..+--+|+.
T Consensus 87 l~~YPGSP~ia~~llR~--~Drl~l~ELHp~e~~~L~~~~~~---~~~~~v~~~DG-----~~~l~allPP~~rRgLVLI 156 (271)
T d2oo3a1 87 LSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDG-----VSKLNALLPPPEKRGLIFI 156 (271)
T ss_dssp CCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCH-----HHHHHHHCSCTTSCEEEEE
T ss_pred cCcCCCCHHHHHHhCCC--CCceEEeecCHHHHHHHHHHhcc---CCCceEEcCch-----HHHHHhhCCCCCCceEEEe
Confidence 35789999998888776 67999999999988887766432 45799999997 65543222 3345679999
Q ss_pred cCCCCCCCC
Q psy7093 223 NPPYVPSLD 231 (322)
Q Consensus 223 NPPy~~~~~ 231 (322)
+|||-..++
T Consensus 157 DPpYE~k~e 165 (271)
T d2oo3a1 157 DPSYERKEE 165 (271)
T ss_dssp CCCCCSTTH
T ss_pred cCCcCCHHH
Confidence 999977554
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.70 E-value=0.057 Score=45.08 Aligned_cols=128 Identities=14% Similarity=0.010 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAI-DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~v-Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++| +..|++.++.++|+.+ .+++|+.. ..+...++.+.+.+...+. ++.++.+|+.++...+.+-.. ...+
T Consensus 7 K~al-ITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 7 KVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp CEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEE-EeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 6677 4456666666666543 26788764 6788888888888877763 488999999654433221110 1236
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
..|++|.|..............+..+..-... +.-.-.+++.+..+++.+|..++.
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n-------~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLN-------TRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHH-------THHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEeccccccccccccchHHHHHHHHhhc-------cceeeeehhhhhhhhhcCCccccc
Confidence 79999999887665555444433221111000 111234556666677777776664
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.37 E-value=0.1 Score=43.76 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=55.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
++.+|=-|+++| ++.++++.+ .+++|+.+|.+++.++.+.+.+.. .+++.++.+|+.++...+.+... -..+
T Consensus 6 gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (268)
T d2bgka1 6 DKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKHG 81 (268)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 367777776655 444444432 378999999999888777665532 34688899999665543332110 0136
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+.|++|.|.....
T Consensus 82 ~iD~lVnnAG~~~ 94 (268)
T d2bgka1 82 KLDIMFGNVGVLS 94 (268)
T ss_dssp CCCEEEECCCCCC
T ss_pred Ccceecccccccc
Confidence 7999999986543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.12 Score=42.78 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=61.1
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+.+|=-|+++| .++..+++. +++|+.+|.+++.++...+.+...+ .++..+.+|+.++...+.+... -..+
T Consensus 8 kv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 55665566555 444455555 7899999999999998888887665 4588999999665533322110 1246
Q ss_pred CeeEEEEcCCCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPK 234 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~ 234 (322)
..|++|.|-..........
T Consensus 84 ~idilinnag~~~~~~~~~ 102 (244)
T d1yb1a_ 84 DVSILVNNAGVVYTSDLFA 102 (244)
T ss_dssp CCSEEEECCCCCCCCCCGG
T ss_pred CCceeEeeccccccccccc
Confidence 7999999987766555443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=93.16 E-value=0.05 Score=45.51 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=58.6
Q ss_pred CCeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CC
Q psy7093 140 PTRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~ 214 (322)
++++|=-|.++| .++..++++ +++|+.+|.+++.++.+.+. . .+++.++++|+.++...+.+.... ..
T Consensus 5 gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~~---~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARE---L--GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT---T--GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH---h--CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 367777776665 344444444 78999999999876654432 2 356899999996655433321110 12
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
++.|++|.|.-......+..+..+.
T Consensus 78 g~iDilVnnAg~~~~~~~~~~~~~~ 102 (254)
T d1hdca_ 78 GSVDGLVNNAGISTGMFLETESVER 102 (254)
T ss_dssp SCCCEEEECCCCCCCSCGGGSCHHH
T ss_pred CCccEEEecCccccccccccccccc
Confidence 5799999998766655555554443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.96 E-value=0.053 Score=42.47 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=59.2
Q ss_pred CCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+||=.| .|.|.+++.+|+.+ +.+++++.-+++-.+.++ ..|.. ..+...+- ...+.+.+......+
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~----~~Ga~--~vi~~~~~---~~~~~v~~~t~~~g~ 95 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLS----RLGVE--YVGDSRSV---DFADEILELTDGYGV 95 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHH----TTCCS--EEEETTCS---THHHHHHHHTTTCCE
T ss_pred CCEEEEECCCCCcccccchhhccc-cccceeeecccccccccc----ccccc--ccccCCcc---CHHHHHHHHhCCCCE
Confidence 36788765 56889999999885 578888888887776665 34543 11211111 001222111234579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+|+.... ...++.+.++|+++|.++.
T Consensus 96 d~v~d~~g---------------------------------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 96 DVVLNSLA---------------------------------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp EEEEECCC---------------------------------THHHHHHHHTEEEEEEEEE
T ss_pred EEEEeccc---------------------------------chHHHHHHHHhcCCCEEEE
Confidence 99997421 0356677899999999876
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=92.86 E-value=0.11 Score=42.95 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=59.2
Q ss_pred EcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCCeeEE
Q psy7093 146 IGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQKFDLV 220 (322)
Q Consensus 146 lg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~fDlI 220 (322)
+-.|++.++.++++.+ .+++|+..+. +++.++.+.+.++..+ .++.++..|+.++...+.+... ...++.|++
T Consensus 6 ITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiL 83 (244)
T d1edoa_ 6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGTIDVV 83 (244)
T ss_dssp ETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSCCSEE
T ss_pred EeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCcc
Confidence 3445555666666544 3688988765 7777777777776665 3588899999665543322110 123689999
Q ss_pred EEcCCCCCCCCCCCCChhh
Q psy7093 221 VSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v 239 (322)
|.|........+..+..+.
T Consensus 84 VnnAg~~~~~~~~~~~~~~ 102 (244)
T d1edoa_ 84 VNNAGITRDTLLIRMKKSQ 102 (244)
T ss_dssp EECCCCCCCCCGGGCCHHH
T ss_pred ccccccccccchhccchHH
Confidence 9998776666655555544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.81 E-value=0.1 Score=43.21 Aligned_cols=92 Identities=12% Similarity=0.071 Sum_probs=60.1
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=-|+++| .++..+++. +++|+.+|.+++.++.+.+.+ .++..++++|+.++...+.+.... ..+
T Consensus 7 K~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 79 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTAFG 79 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 66776676655 334444444 789999999998877665443 245888999996655433221110 135
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
+.|++|.|..+.....+..++.+.
T Consensus 80 ~idilinnAG~~~~~~~~~~~~~~ 103 (244)
T d1nffa_ 80 GLHVLVNNAGILNIGTIEDYALTE 103 (244)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHH
T ss_pred CCeEEEECCcccCCCchhhCCHHH
Confidence 789999999877766666665554
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.19 Score=41.41 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++++|=-|+++| ++.++++.+ .+++|+.+|.+++.++.+.+.. + .+..++.|+.++...+.+.. .-++.
T Consensus 7 GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~d~~~v~~~~~--~~g~i 77 (244)
T d1pr9a_ 7 GRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC---P---GIEPVCVDLGDWEATERALG--SVGPV 77 (244)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHT--TCCCC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHH--HhCCc
Confidence 367777776555 444444432 2789999999998876654332 1 37788899966554433322 23689
Q ss_pred eEEEEcCCCCCCCCCCCCChhh
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v 239 (322)
|++|.|........+..++.+.
T Consensus 78 DilVnnAg~~~~~~~~~~~~~~ 99 (244)
T d1pr9a_ 78 DLLVNNAAVALLQPFLEVTKEA 99 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHH
T ss_pred eEEEeccccccccchhhhhHHH
Confidence 9999998776655555555443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.71 E-value=0.045 Score=42.78 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=59.3
Q ss_pred CCeEEEEcCc--hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSG--TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~G--sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+||=.|+| .|.+++.+|+.. +++|++++.|++-.+.+++ +|.. .++. ..+++..+.+.+......+
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----lGa~---~vi~--~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----AGAW---QVIN--YREEDLVERLKEITGGKKV 98 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----HTCS---EEEE--TTTSCHHHHHHHHTTTCCE
T ss_pred CCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----cCCe---EEEE--CCCCCHHHHHHHHhCCCCe
Confidence 4678777544 678889999885 6899999999998888763 4543 2222 1111102222111134579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+|+..-. ...+..+...++++|.+++
T Consensus 99 d~v~d~~g---------------------------------~~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 99 RVVYDSVG---------------------------------RDTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp EEEEECSC---------------------------------GGGHHHHHHTEEEEEEEEE
T ss_pred EEEEeCcc---------------------------------HHHHHHHHHHHhcCCeeee
Confidence 98886321 0245667889999998765
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.70 E-value=0.078 Score=43.81 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=59.5
Q ss_pred EEEEcCchhHHHHHHHHhC--CCC-------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--
Q psy7093 143 MIEIGSGTGAITISLLKHF--PKL-------KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-- 211 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~--~~~-------~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-- 211 (322)
||=-|+++| ++.++++.+ .++ .|+.++.+++.++.+...+...+ .++.++.+|+.++...+.+...
T Consensus 4 vlITGas~G-IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (240)
T d2bd0a1 4 LLITGAGKG-IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIV 80 (240)
T ss_dssp EEEETTTSH-HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred EEEccCCCH-HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 344455444 555555433 133 38999999999988877776655 3588899999765543332111
Q ss_pred cCCCCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 212 LLEQKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 212 ~~~~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
-..+..|++|.|.-+.....+..+..+.
T Consensus 81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~ 108 (240)
T d2bd0a1 81 ERYGHIDCLVNNAGVGRFGALSDLTEED 108 (240)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHH
T ss_pred HHcCCcceeecccccccCCccccCCHHH
Confidence 1246799999998776666555555443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.68 E-value=0.1 Score=43.46 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=58.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=-|+++| ++.++++.+ .+++|+.+|.+.+.++.+.+.+ + .++.++..|+.++...+.+.... ..++
T Consensus 6 K~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 79 (256)
T d1k2wa_ 6 KTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDRWGS 79 (256)
T ss_dssp EEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 56666665544 444444432 2789999999998776665433 3 35888999996655443321110 1367
Q ss_pred eeEEEEcCCCCCCCCCCCCChhh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.|++|.|..+........+..+.
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~ 102 (256)
T d1k2wa_ 80 IDILVNNAALFDLAPIVEITRES 102 (256)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHH
T ss_pred ccEEEeecccccccccccCCHHH
Confidence 99999998877666655555443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.55 E-value=0.085 Score=40.60 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=32.9
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+|+=+|+| .|.+++.+++.. +.+|+++|.++..++.+++
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc
Confidence 3678878887 567778888886 4899999999998888763
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.38 E-value=0.15 Score=42.03 Aligned_cols=124 Identities=14% Similarity=0.037 Sum_probs=67.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|++ +.++.++|+.+ .+++|+.++.+.+.++...+ .+ ..++.++++|+.++...+.+.... ..++
T Consensus 6 K~alItGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~ 79 (241)
T d2a4ka1 6 KTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVA---AL--EAEAIAVVADVSDPKAVEAVFAEALEEFGR 79 (241)
T ss_dssp CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hc--CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 566666655 44555555443 37899999999987654433 33 356888999996544332221100 1267
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.|++|.|........+.+++.+....--.. .+.....+.+.+...++.++.+++
T Consensus 80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~-------n~~~~~~~~k~~~~~~~~~~~i~~ 133 (241)
T d2a4ka1 80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRV-------NLTGSFLVARKAGEVLEEGGSLVL 133 (241)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHH-------HHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ccEeccccccccccchhhhhcccccccccc-------ccccccccccccccccccccceee
Confidence 999999976555555444444332110000 011123445555666777776655
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.22 E-value=0.16 Score=42.57 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=58.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=-|++ +.++.++++.+ .+++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.++...+.+... ...+
T Consensus 6 K~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 84 (272)
T d1xkqa_ 6 KTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFG 84 (272)
T ss_dssp CEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 566666654 44444444432 2789999999999999988888766543 4689999999665543332111 0136
Q ss_pred CeeEEEEcCCCCCC
Q psy7093 216 KFDLVVSNPPYVPS 229 (322)
Q Consensus 216 ~fDlIv~NPPy~~~ 229 (322)
+.|++|.|.-....
T Consensus 85 ~iDilvnnAG~~~~ 98 (272)
T d1xkqa_ 85 KIDVLVNNAGAAIP 98 (272)
T ss_dssp CCCEEEECCCCCCC
T ss_pred CceEEEeCCcccCc
Confidence 79999999655443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.13 Score=42.78 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=57.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|=-|+++ .++.++++.+ .+++|+.+|.+.+.++.+...+....-..++.++.+|+.++...+.+.... ..++
T Consensus 4 KvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (254)
T d2gdza1 4 KVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR 82 (254)
T ss_dssp CEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 5666666554 4555555433 378999999999988877766644322346889999996655433221100 1367
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|.......
T Consensus 83 iDilVnnAg~~~~~ 96 (254)
T d2gdza1 83 LDILVNNAGVNNEK 96 (254)
T ss_dssp CCEEEECCCCCCSS
T ss_pred cCeecccccccccc
Confidence 99999997665443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.09 E-value=0.35 Score=37.00 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=60.9
Q ss_pred eEEEEcCch--hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGT--GAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~Gs--G~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+|+=+|||. |.++..+.+..+..+|+++|.+++.++.|+++ +..+ ....+. ... .....|+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~------~~~----~~~~~dl 65 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSI------AKV----EDFSPDF 65 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCG------GGG----GGTCCSE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhh------hhh----hcccccc
Confidence 567788873 33444454444457899999999999888753 3221 112222 111 1235788
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
|+...|- +.+..+++...++++++ .+++.++........++-
T Consensus 66 Iila~p~-----------------------------~~~~~vl~~l~~~~~~~-~ii~d~~s~k~~~~~~~~ 107 (171)
T d2g5ca2 66 VMLSSPV-----------------------------RTFREIAKKLSYILSED-ATVTDQGSVKGKLVYDLE 107 (171)
T ss_dssp EEECSCH-----------------------------HHHHHHHHHHHHHSCTT-CEEEECCSCCTHHHHHHH
T ss_pred ccccCCc-----------------------------hhhhhhhhhhhcccccc-ccccccccccHHHHHHHH
Confidence 8774431 11456778888888776 455678776655554443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.097 Score=43.50 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=56.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
++++|=-|+++| ++.++++.+ .+++|+.+|.+++.++...+.. .+..++.+|+.++...+.+.... ..+
T Consensus 6 GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 6 GKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp TCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence 366777776555 444444432 3789999999998877655432 23788899996655433321110 126
Q ss_pred CeeEEEEcCCCCC-CCCCCCCChh
Q psy7093 216 KFDLVVSNPPYVP-SLDIPKLEPE 238 (322)
Q Consensus 216 ~fDlIv~NPPy~~-~~~~~~l~~~ 238 (322)
+.|++|.|.-+.. ...+..++.+
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~~~ 102 (250)
T d1ydea1 79 RLDCVVNNAGHHPPPQRPEETSAQ 102 (250)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHH
T ss_pred CCCEEEecccccccccccccccHH
Confidence 7899999987543 3334444443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.89 E-value=0.7 Score=37.92 Aligned_cols=86 Identities=9% Similarity=0.080 Sum_probs=57.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-----
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP----- 210 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~----- 210 (322)
.+|.=+-.|++.++.++|+.+ .+++|+.++.+++.++.+.+.+...+...++.++.+|+.++...+.+..
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~~ 85 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVREL 85 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 456666666667777777654 4689999999999998888777655545578999999966543322211
Q ss_pred -CcCCCCeeEEEEcCCC
Q psy7093 211 -DLLEQKFDLVVSNPPY 226 (322)
Q Consensus 211 -~~~~~~fDlIv~NPPy 226 (322)
.......|+++.|--+
T Consensus 86 ~~~~~~~~~~lvnnag~ 102 (259)
T d1oaaa_ 86 PRPEGLQRLLLINNAAT 102 (259)
T ss_dssp CCCTTCCEEEEEECCCC
T ss_pred hhhccCceEEEEecccc
Confidence 0123467888888543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=91.77 E-value=0.12 Score=42.85 Aligned_cols=89 Identities=10% Similarity=0.149 Sum_probs=54.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=-|+ ++.++.++++.+ .+++|+.+|.+++..+.++. .+ ..+++.|+.++...+.+... -..++
T Consensus 6 K~alITGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 76 (248)
T d2d1ya1 6 KGVLVTGG-ARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYALGR 76 (248)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 56766664 444555555433 37899999999887665542 22 45678999665433322110 01367
Q ss_pred eeEEEEcCCCCCCCCCCCCChh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
.|++|.|.-......+..++.+
T Consensus 77 iDiLVnnAG~~~~~~~~~~~~e 98 (248)
T d2d1ya1 77 VDVLVNNAAIAAPGSALTVRLP 98 (248)
T ss_dssp CCEEEECCCCCCCBCTTTCCHH
T ss_pred CCeEEEeCcCCCCCChhhCCHH
Confidence 9999999876655555555544
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.24 Score=42.05 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=62.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccCCCcccccccCcC--c
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHN---VANQLQVFHAEIDSKGQVKNLQPD--L 212 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~~~~~~l~~~--~ 212 (322)
++++|=-|+++ .++.++++.+ .+++|+.+|.+++.++.+.+.+.... ...++.++.+|+.++...+.+... -
T Consensus 12 gKvalITGas~-GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 90 (297)
T d1yxma1 12 GQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD 90 (297)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence 36667666544 4555555433 37899999999998887776665421 234688999999665543332111 0
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
..++.|++|.|........+..+..+.
T Consensus 91 ~~G~iDiLVnnAg~~~~~~~~~~~~e~ 117 (297)
T d1yxma1 91 TFGKINFLVNNGGGQFLSPAEHISSKG 117 (297)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHH
T ss_pred HhCCeEEEEeeccccccCchhhhhhhh
Confidence 135799999998765555555554443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.73 E-value=0.11 Score=43.41 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=59.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNA-VMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~-~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=-| |++.++.++++.+ .+++|+.+|.+.+.+..+.+.+ +..+ .++.++++|+.++...+.+... -..+
T Consensus 10 K~alITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (260)
T d1h5qa_ 10 KTIIVTG-GNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDADLG 86 (260)
T ss_dssp EEEEEET-TTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5666666 4555555555443 3789999999887766555544 3344 3588899999665543332111 1246
Q ss_pred CeeEEEEcCCCCCCCCCCCCChh
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
+.|++|.|...........++.+
T Consensus 87 ~iDilVnnAg~~~~~~~~~~~~~ 109 (260)
T d1h5qa_ 87 PISGLIANAGVSVVKPATELTHE 109 (260)
T ss_dssp SEEEEEECCCCCCCSCGGGCCHH
T ss_pred CCcEecccccccccCCHHHhccc
Confidence 89999999877665555555444
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.44 E-value=0.13 Score=42.48 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|=-|. ++.++.++++.+ .+++|+.+|.++. +.+...++..+ .++.++.+|+.++...+.+.... ..++
T Consensus 6 KvalVTGa-s~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 6 KLAVITGG-ANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 56665554 455555555443 3789999998754 22333344444 45889999996655443321110 1367
Q ss_pred eeEEEEcCCCCCCCCCCCCChhh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.|++|.|.-+.....+..++.+.
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~ 103 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQ 103 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHH
T ss_pred CCEEEECCCCCCCCChHhCCHHH
Confidence 99999998776666555555544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.42 E-value=0.13 Score=42.49 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=56.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=-|+++| ++.++++.+ .+++|+.+|.+++.++.+.+.. +..++.+|+.++...+.+... -..++
T Consensus 6 K~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 6 KAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHLGR 77 (242)
T ss_dssp CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 56776666555 555555443 2789999999998877665422 256788999665543322110 01257
Q ss_pred eeEEEEcCCCCCCCCCCCCChh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
.|++|.|.-......+..++.+
T Consensus 78 iDilVnnAG~~~~~~~~~~~~~ 99 (242)
T d1ulsa_ 78 LDGVVHYAGITRDNFHWKMPLE 99 (242)
T ss_dssp CCEEEECCCCCCCCCGGGCCHH
T ss_pred ceEEEECCcccccCchhhCcch
Confidence 9999999776555554444444
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.39 E-value=0.14 Score=42.78 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=56.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=-| |++.++.++++.+ .+++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.++...+.+.... ..+
T Consensus 6 KvalVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 84 (264)
T d1spxa_ 6 KVAIITG-SSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG 84 (264)
T ss_dssp CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeC-cCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4455444 4555555555543 3789999999999999888888776543 46899999996655433321110 136
Q ss_pred CeeEEEEcCCC
Q psy7093 216 KFDLVVSNPPY 226 (322)
Q Consensus 216 ~fDlIv~NPPy 226 (322)
+.|++|.|.-.
T Consensus 85 ~iDilvnnAG~ 95 (264)
T d1spxa_ 85 KLDILVNNAGA 95 (264)
T ss_dssp CCCEEEECCC-
T ss_pred CCCEeeccccc
Confidence 79999998644
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=90.81 E-value=0.23 Score=41.40 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=59.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS-KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis-~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=-|.++| ++.++++.+ .+++|+.++.+ ++.++.+.+.++..+ .++.+++.|+.++...+.+... -..+
T Consensus 8 K~alITGas~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 84 (261)
T d1geea_ 8 KVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEFG 84 (261)
T ss_dssp CEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 55665555444 555555443 37899999986 456777776676665 3588899999665543332111 0135
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
+.|++|.|...........++.+.
T Consensus 85 ~iDiLVnnAG~~~~~~~~~~~~~~ 108 (261)
T d1geea_ 85 KLDVMINNAGLENPVSSHEMSLSD 108 (261)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHH
T ss_pred CCCEeeccceecCCcchhhcCHHH
Confidence 789999998766555555554443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.75 E-value=0.42 Score=39.14 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=56.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++++|=-|+++| ++.++++.+ .+++|+.+|.+++.++.+.+.. . .+..++.|+.+++..+.... .-++.
T Consensus 5 GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~-----~-~~~~~~~Dv~~~~~v~~~~~--~~g~i 75 (242)
T d1cyda_ 5 GLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----P-GIEPVCVDLGDWDATEKALG--GIGPV 75 (242)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----T-TCEEEECCTTCHHHHHHHHT--TCCCC
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----C-CCeEEEEeCCCHHHHHHHHH--HcCCC
Confidence 367776665554 555444432 3789999999988766554332 1 37788899966554333222 23689
Q ss_pred eEEEEcCCCCCCCCCCCCChh
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~ 238 (322)
|++|.|........+..+..+
T Consensus 76 DilVnnAg~~~~~~~~~~~~~ 96 (242)
T d1cyda_ 76 DLLVNNAALVIMQPFLEVTKE 96 (242)
T ss_dssp SEEEECCCCCCCBCGGGCCHH
T ss_pred eEEEECCccccchhHHHHHHH
Confidence 999999876555555555444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.53 E-value=0.15 Score=37.73 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=43.5
Q ss_pred CchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEE
Q psy7093 148 SGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222 (322)
Q Consensus 148 ~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~ 222 (322)
||.|.++..+++.+ .+..|+.+|.+++.++.+... .+ +.++.+|..++..+... .-...|.+++
T Consensus 6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~----~~vi~Gd~~~~~~l~~~----~i~~a~~vv~ 71 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDA----GIEDADMYIA 71 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHT----TTTTCSEEEE
T ss_pred ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh----hhhccCcccchhhhhhc----Chhhhhhhcc
Confidence 45577877777654 357999999999988766532 22 67889998554433332 2346788887
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.52 E-value=0.31 Score=40.95 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc--CcCC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP--DLLE 214 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~--~~~~ 214 (322)
+++++|=-|+++| ++.++++.+ .+++|+.+|.+...++.+.+.+.... ..++.++..|+.++...+.... ....
T Consensus 24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 101 (294)
T d1w6ua_ 24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA 101 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhc
Confidence 3466777666555 554444432 27899999999998877766654322 2358889999855443222110 0124
Q ss_pred CCeeEEEEcCCCCCCCCCCCC
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKL 235 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l 235 (322)
+..|++|.|.-+.........
T Consensus 102 g~iDilvnnAg~~~~~~~~~~ 122 (294)
T d1w6ua_ 102 GHPNIVINNAAGNFISPTERL 122 (294)
T ss_dssp CSCSEEEECCCCCCCSCGGGC
T ss_pred cccchhhhhhhhccccccccc
Confidence 678999999876655544333
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.46 E-value=0.27 Score=38.38 Aligned_cols=94 Identities=13% Similarity=0.186 Sum_probs=59.1
Q ss_pred CeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+||=-|. |.|.+++.+++.+ +++|+++--+++-.+.++ ..|... .+...+. ..........+.+|
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~----~lGa~~--vi~~~~~-----~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLR----VLGAKE--VLAREDV-----MAERIRPLDKQRWA 100 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHH----HTTCSE--EEECC--------------CCSCCEE
T ss_pred CEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHH----hcccce--eeecchh-----HHHHHHHhhccCcC
Confidence 67887774 5678999999986 789999998888777765 345432 2211221 11111112456899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+|+-+.. | ..+..+.++|++||.++. +|
T Consensus 101 ~vid~vg-------------------------g--------~~~~~~l~~l~~~Griv~-~G 128 (176)
T d1xa0a2 101 AAVDPVG-------------------------G--------RTLATVLSRMRYGGAVAV-SG 128 (176)
T ss_dssp EEEECST-------------------------T--------TTHHHHHHTEEEEEEEEE-CS
T ss_pred EEEEcCC-------------------------c--------hhHHHHHHHhCCCceEEE-ee
Confidence 8886421 0 246678899999999886 44
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.80 E-value=0.24 Score=37.80 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.|+|+ |.+++.+++. .+.+|+++|.++..++.+++
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH
T ss_pred CCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhh
Confidence 37888888875 5556666666 45799999999998888764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=88.73 E-value=0.41 Score=42.38 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=45.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMHNVAN---QLQVFH 196 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~---~i~~~~ 196 (322)
..++|+|+-.|..+..+++..++ .+|+++|.++...+..++|++.+...+ ++.++.
T Consensus 214 ~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 214 EKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 78999999999998887765443 689999999999999999998876432 455544
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.01 E-value=0.28 Score=40.26 Aligned_cols=84 Identities=13% Similarity=0.271 Sum_probs=54.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC----
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD---- 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~---- 211 (322)
++||=-| |++.|+.++|+.+ .+.+|+.++.+++.++.+++-.+. + .++.++..|+.++...+.+...
T Consensus 3 KtilITG-as~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dvs~~~~v~~~~~~i~~~ 78 (248)
T d1snya_ 3 NSILITG-CNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-H--SNIHILEIDLRNFDAYDKLVADIEGV 78 (248)
T ss_dssp SEEEESC-CSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-C--TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-C--CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence 5677444 5556777777543 467999999998877766543333 2 3599999999665543332111
Q ss_pred cCCCCeeEEEEcCCCCC
Q psy7093 212 LLEQKFDLVVSNPPYVP 228 (322)
Q Consensus 212 ~~~~~fDlIv~NPPy~~ 228 (322)
...++.|++|.|.-+..
T Consensus 79 ~~~~~iDiLvnNAg~~~ 95 (248)
T d1snya_ 79 TKDQGLNVLFNNAGIAP 95 (248)
T ss_dssp HGGGCCSEEEECCCCCC
T ss_pred hhcCCcceEEeeccccc
Confidence 12467999999976533
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.99 E-value=0.86 Score=39.62 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=42.8
Q ss_pred CCcccCchhHHHH-----HHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHH
Q psy7093 114 PVFIPRSETEELI-----DIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHF-------PKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 114 ~~~iprp~te~lv-----~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~-------~~~~v~~vDis~~al~~A~ 180 (322)
|.|+-.|+...+. .++........ ..+..|+|+|+|+|.++..++..+ ...+++.+|.|+..-+.-+
T Consensus 48 GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~ 127 (365)
T d1zkda1 48 GDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ 127 (365)
T ss_dssp --CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred CCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHH
Confidence 5666555553333 23333322221 123579999999999988776643 2357999999997665555
Q ss_pred HHHH
Q psy7093 181 QNAV 184 (322)
Q Consensus 181 ~n~~ 184 (322)
+++.
T Consensus 128 ~~l~ 131 (365)
T d1zkda1 128 TLLA 131 (365)
T ss_dssp HHST
T ss_pred HHhc
Confidence 5443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.81 E-value=0.27 Score=38.31 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=60.8
Q ss_pred CCeEEEEcCc--hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSG--TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~G--sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+||=.|++ .|..++.+++.. +++|+++.-+++..+.++. .+.. ..+...|- ...+..........+
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~----~Ga~--~vi~~~~~---~~~~~~~~~~~~~Gv 99 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTV---NSLEEALKKASPDGY 99 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----TTCS--EEEETTSC---SCHHHHHHHHCTTCE
T ss_pred CCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHh----hhhh--hhcccccc---cHHHHHHHHhhcCCC
Confidence 4788876664 568888888886 5799999999988777664 3433 11222221 001111111234579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+|+-.- | ...++.+.++|+++|.+++ +|
T Consensus 100 d~v~D~v-----------------------------G----~~~~~~~~~~l~~~G~~v~-~G 128 (182)
T d1v3va2 100 DCYFDNV-----------------------------G----GEFLNTVLSQMKDFGKIAI-CG 128 (182)
T ss_dssp EEEEESS-----------------------------C----HHHHHHHGGGEEEEEEEEE-CC
T ss_pred ceeEEec-----------------------------C----chhhhhhhhhccCCCeEEe-ec
Confidence 9988621 0 1467788999999999886 55
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.54 E-value=0.39 Score=37.31 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=36.1
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
++..|+=.|+| .|..++.+++.+...+|+++|.+++.++.|++.
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 34789999997 567778888887778999999999999998754
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.94 E-value=0.2 Score=41.42 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=71.0
Q ss_pred CCeEEEEcCch----h-HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--c
Q psy7093 140 PTRMIEIGSGT----G-AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--L 212 (322)
Q Consensus 140 ~~~iLDlg~Gs----G-~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~ 212 (322)
++++|=-|+++ | .++..++++ +++|+..+.++...+.+++.....+ +..+++.|+.++...+.+... .
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 82 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKE 82 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHHHH
Confidence 36788888643 3 344555555 7899999999877777766555443 367789999665443332110 0
Q ss_pred CCCCeeEEEEcCCCCCCC----CCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 213 LEQKFDLVVSNPPYVPSL----DIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~----~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
..++.|++|.|-.+.+.. .......+. |+-...+ .+...-.+.+.+..+++++|.++...
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~--~~~~~~v-----n~~~~~~~~~~~~~~~~~~G~Iv~is 146 (256)
T d1ulua_ 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQD--WLLALEV-----SAYSLVAVARRAEPLLREGGGIVTLT 146 (256)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHH--HHHHHHH-----HTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred hcCCceEEEeccccccccccccchhhhhhhh--hhHhhhh-----hHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 136799999886543211 111111111 1000000 01113355666777888889877643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.80 E-value=0.82 Score=35.02 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+||=.|. |.|.+++.+++.. +++|++++.+++..+.+++
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~ 70 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA 70 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH
T ss_pred CCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccc
Confidence 3478888773 4578888899986 5799999999887777653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.65 E-value=0.28 Score=35.89 Aligned_cols=94 Identities=11% Similarity=0.129 Sum_probs=62.5
Q ss_pred CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCC
Q psy7093 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 148 ~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~ 227 (322)
||.|.++..+++.+.+..++.+|.++...+.++ ..+ +.++.+|.+++..+... .-.+.+.+++..+
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~----~~~----~~~i~Gd~~~~~~L~~a----~i~~A~~vi~~~~-- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL----RSG----ANFVHGDPTRVSDLEKA----NVRGARAVIVNLE-- 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH----HTT----CEEEESCTTSHHHHHHT----TCTTCSEEEECCS--
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH----hcC----ccccccccCCHHHHHHh----hhhcCcEEEEecc--
Confidence 688999999999998888999999998776553 223 78899999655444332 2346777777432
Q ss_pred CCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 228 ~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+ . ....++-...+.+.|...++..+...
T Consensus 72 ---~-----d-------------------~~n~~~~~~~r~~~~~~~iia~~~~~ 99 (129)
T d2fy8a1 72 ---S-----D-------------------SETIHCILGIRKIDESVRIIAEAERY 99 (129)
T ss_dssp ---S-----H-------------------HHHHHHHHHHHHHCSSSCEEEECSSG
T ss_pred ---c-----h-------------------hhhHHHHHHHHHHCCCceEEEEEcCH
Confidence 0 0 01233444556678888887776543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=86.40 E-value=0.73 Score=36.00 Aligned_cols=78 Identities=6% Similarity=0.023 Sum_probs=49.1
Q ss_pred CCCeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 139 TPTRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 139 ~~~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
++++||=.|+++| .++..++++ +++|+.++.+++.++.+.+.+.... ++.+...|+.+....... -+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~-----~~ 91 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEA-----VK 91 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHH-----TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHH-----hc
Confidence 3478887775544 334444444 7899999999999988877765432 244556666332222211 24
Q ss_pred CeeEEEEcCCC
Q psy7093 216 KFDLVVSNPPY 226 (322)
Q Consensus 216 ~fDlIv~NPPy 226 (322)
..|++|.|.+.
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 68999999654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=86.16 E-value=0.47 Score=41.41 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=18.5
Q ss_pred HHHHHHHHhccCccCcEEEEEE
Q psy7093 258 IKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 258 ~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+..|++.-.+-|+|||.+++.+
T Consensus 188 ~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 188 HALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp HHHHHHHHHHHBCTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEE
Confidence 5678888889999999998855
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.69 E-value=0.57 Score=39.28 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=52.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe---CCHHHHHHHHHHHHHc-CCCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID---QSKHACDLTEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD---is~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
++|.=+-.||+.++.++|+.+ .+++++.++ .+.+..+...+-++.. ....++.++..|+.++.....+......
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 455556455556666665543 245544443 3322222222222222 2234689999999665544333222345
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChh
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
+..|+++.|.-.........++.+
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e 105 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGED 105 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHH
T ss_pred cchhhhhhcccccccccccchhHh
Confidence 789999999877666655555544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.35 E-value=0.86 Score=34.98 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=60.8
Q ss_pred CeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
..||=-| .|.|.+++.+|+.+ +++|+++.-+++-.+.+++ ++.. ..+...|. ..........+.+|
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~----lGad--~vi~~~~~-----~~~~~~~~~~~gvd 92 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----LGAS--EVISREDV-----YDGTLKALSKQQWQ 92 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----HTCS--EEEEHHHH-----CSSCCCSSCCCCEE
T ss_pred CEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHh----hccc--ceEeccch-----hchhhhcccCCCce
Confidence 4577655 45778999999986 5799999998877666653 4543 22222332 11111112346799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+|+-+- | -..+..+.+.|+++|.+++ +|.
T Consensus 93 ~vid~v-------------------------g--------g~~~~~~~~~l~~~G~iv~-~G~ 121 (167)
T d1tt7a2 93 GAVDPV-------------------------G--------GKQLASLLSKIQYGGSVAV-SGL 121 (167)
T ss_dssp EEEESC-------------------------C--------THHHHHHHTTEEEEEEEEE-CCC
T ss_pred EEEecC-------------------------c--------HHHHHHHHHHhccCceEEE-eec
Confidence 988631 1 1467789999999999876 543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.92 E-value=1.2 Score=36.68 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=56.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc--CcCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP--DLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~--~~~~~~ 216 (322)
+++|=-|+++| ++.++|+.+ .+++|+.++.+.+.++.+........ ...+.+...|..+......... ....+.
T Consensus 15 K~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~ 92 (269)
T d1xu9a_ 15 KKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLMGG 92 (269)
T ss_dssp CEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHhCC
Confidence 67777776666 444444432 27899999999999988876654433 2347777888733221111100 012357
Q ss_pred eeEEEEcCCCCCCCCCCCCCh
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEP 237 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~ 237 (322)
.|+++.|-...........+.
T Consensus 93 ~~~li~nag~~~~~~~~~~~~ 113 (269)
T d1xu9a_ 93 LDMLILNHITNTSLNLFHDDI 113 (269)
T ss_dssp CSEEEECCCCCCCCCCCCSCH
T ss_pred ccccccccccccccccccCCH
Confidence 899998876655544444433
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.89 E-value=5.1 Score=29.73 Aligned_cols=101 Identities=11% Similarity=0.156 Sum_probs=58.7
Q ss_pred eEEEEcCc--hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSG--TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~G--sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+|.=+|+| .+.++..+.+. +.+|+++|.+++.++.|++ .+.-+ ....+. +. -...|+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~------~~------~~~~Di 60 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDL------SL------LQTAKI 60 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTSCS---EEESCG------GG------GTTCSE
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH----hhccc---eeeeec------cc------cccccc
Confidence 35556666 23344444443 7899999999988777654 23221 111222 22 135688
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGI 293 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~ 293 (322)
|+.--|. .....++++....|+++-++ +.++.........+.+.
T Consensus 61 Iilavp~-----------------------------~~~~~vl~~l~~~l~~~~iv-~~~~s~~~~~~~~~~~~ 104 (165)
T d2f1ka2 61 IFLCTPI-----------------------------QLILPTLEKLIPHLSPTAIV-TDVASVKTAIAEPASQL 104 (165)
T ss_dssp EEECSCH-----------------------------HHHHHHHHHHGGGSCTTCEE-EECCSCCHHHHHHHHHH
T ss_pred ccccCcH-----------------------------hhhhhhhhhhhhhcccccce-eeccccchHHHHHHHHh
Confidence 8763331 12567888888888887654 56776666555554443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.14 E-value=1.6 Score=33.83 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=57.8
Q ss_pred CeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+||=.| .|.|.+++.+|+.++...|+++..+++...... +..+.. .++...- +...+.+... ....+|
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~---~~~gad---~vi~~~~--~~~~~~~~~~-~~~GvD 102 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT---SELGFD---AAVNYKT--GNVAEQLREA-CPGGVD 102 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH---HHSCCS---EEEETTS--SCHHHHHHHH-CTTCEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh---hcccce---EEeeccc--hhHHHHHHHH-hccCce
Confidence 5788766 578899999999987778888887766544332 233432 2222211 1101111111 235699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+|+-.- | ...++.+.++|+++|.++.
T Consensus 103 vv~D~v-----------------------------G----g~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 103 VYFDNV-----------------------------G----GDISNTVISQMNENSHIIL 128 (187)
T ss_dssp EEEESS-----------------------------C----HHHHHHHHTTEEEEEEEEE
T ss_pred EEEecC-----------------------------C----chhHHHHhhhccccccEEE
Confidence 998621 0 1457788999999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.80 E-value=0.78 Score=35.34 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=34.7
Q ss_pred CCCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+|+=+|||. |..++.+++.....+|+++|.++..++.|++
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 347899999974 5667777887777899999999999988864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=81.21 E-value=0.84 Score=34.12 Aligned_cols=72 Identities=8% Similarity=0.088 Sum_probs=43.1
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+|+=+|+ |.++..+++.+ .+..++.+|.+++......+.... ..+.++.+|.+++..++.. .-.+.|.
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a----~i~~a~~ 74 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA----GIDRCRA 74 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH----TTTTCSE
T ss_pred EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh----ccccCCE
Confidence 4555554 56665555543 257899999998754433333332 2388999999654443332 2346788
Q ss_pred EEEc
Q psy7093 220 VVSN 223 (322)
Q Consensus 220 Iv~N 223 (322)
|++-
T Consensus 75 vi~~ 78 (153)
T d1id1a_ 75 ILAL 78 (153)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8873
|